RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher04 4.4.0-18-powerpc64-smp #34~14.04.1-Ubuntu SMP Thu Apr 7 18:53:24 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 16 Apr 03:15:06 ntpdate[16635]: adjust time server 10.211.37.1 offset -0.000054 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9431742', '/home/buildd/filecache-default/59b2027bd898a08257bdf6a14dda09a63b60b4fb'] Unpacking chroot for build PACKAGEBUILD-9431742 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9431742'] Mounting chroot for build PACKAGEBUILD-9431742 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9431742', 'deb http://ftpmaster.internal/ubuntu xenial main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu xenial-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu xenial-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-9431742 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9431742', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-9431742 Get:1 http://ftpmaster.internal xenial InRelease [247 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [82.2 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [82.2 kB] Get:4 http://ftpmaster.internal xenial/main powerpc Packages [1145 kB] Get:5 http://ftpmaster.internal xenial/restricted powerpc Packages [64 B] Get:6 http://ftpmaster.internal xenial/universe powerpc Packages [7313 kB] Get:7 http://ftpmaster.internal xenial/multiverse powerpc Packages [123 kB] Get:8 http://ftpmaster.internal xenial/main Translation-en [563 kB] Get:9 http://ftpmaster.internal xenial/multiverse Translation-en [107 kB] Get:10 http://ftpmaster.internal xenial/restricted Translation-en [2908 B] Get:11 http://ftpmaster.internal xenial/universe Translation-en [4358 kB] Get:12 http://ftpmaster.internal xenial-security/main powerpc Packages [28 B] Get:13 http://ftpmaster.internal xenial-security/restricted powerpc Packages [28 B] Get:14 http://ftpmaster.internal xenial-security/universe powerpc Packages [28 B] Get:15 http://ftpmaster.internal xenial-security/multiverse powerpc Packages [28 B] Get:16 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-security/multiverse Translation-en [28 B] Get:18 http://ftpmaster.internal xenial-security/restricted Translation-en [28 B] Get:19 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:20 http://ftpmaster.internal xenial-updates/main powerpc Packages [28 B] Get:21 http://ftpmaster.internal xenial-updates/restricted powerpc Packages [28 B] Get:22 http://ftpmaster.internal xenial-updates/universe powerpc Packages [28 B] Get:23 http://ftpmaster.internal xenial-updates/multiverse powerpc Packages [28 B] Get:24 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:25 http://ftpmaster.internal xenial-updates/multiverse Translation-en [28 B] Get:26 http://ftpmaster.internal xenial-updates/restricted Translation-en [28 B] Get:27 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Fetched 14.0 MB in 12s (1159 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libgnutls-deb0-28 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: gcc-6-base init-system-helpers libapt-pkg5.0 libgnutls30 libisl15 liblz4-1 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files base-passwd binutils bsdutils ca-certificates coreutils cpp cpp-5 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libacl1 libapparmor1 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libnettle6 libnih-dbus1 libnih1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libpng12-0 libreadline6 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base pkg-create-dbgsym pkgbinarymangler procps readline-common sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata udev util-linux 138 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. Need to get 65.1 MB of archives. After this operation, 15.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files powerpc 9.4ubuntu4 [63.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils powerpc 1:2.27.1-6ubuntu3 [51.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main coreutils powerpc 8.25-2ubuntu2 [1090 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main debianutils powerpc 4.7 [85.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main dpkg powerpc 1.18.4ubuntu1 [2058 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main dash powerpc 0.5.8-2.1ubuntu2 [106 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main diffutils powerpc 1:3.3-3 [148 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev powerpc 2.23-0ubuntu3 [1869 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin powerpc 2.23-0ubuntu3 [61.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev powerpc 4.4.0-18.34 [831 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libc6 powerpc 2.23-0ubuntu3 [2349 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin powerpc 2.23-0ubuntu3 [521 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main gcc-6-base powerpc 6-20160405-0ubuntu2 [14.3 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 powerpc 1:6-20160405-0ubuntu2 [27.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs powerpc 1.42.13-1ubuntu1 [187 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs powerpc 1.42.13-1ubuntu1 [753 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main findutils powerpc 4.6.0+git+20160126-2 [272 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main grep powerpc 2.24-1 [142 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main hostname powerpc 3.16ubuntu2 [11.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main init-system-helpers all 1.29ubuntu1 [32.1 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils powerpc 2.88dsf-59.3ubuntu2 [21.5 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main perl-modules-5.22 all 5.22.1-9 [2641 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libperl5.22 powerpc 5.22.1-9 [2771 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main perl powerpc 5.22.1-9 [237 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main perl-base powerpc 5.22.1-9 [1173 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main init powerpc 1.29ubuntu1 [4540 B] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main login powerpc 1:4.2-3.1ubuntu5 [302 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 powerpc 2.27.1-6ubuntu3 [58.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.5-1ubuntu2 [3884 B] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 powerpc 1:2.4.5-1ubuntu2 [34.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libpam0g powerpc 1.1.8-3.2ubuntu2 [52.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libpcre3 powerpc 2:8.38-3.1 [197 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 powerpc 2.4-3build2 [49.9 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 powerpc 2.27.1-6ubuntu3 [125 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 powerpc 6.0+20160213-1ubuntu1 [69.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 powerpc 6.0+20160213-1ubuntu1 [81.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 powerpc 6.0+20160213-1ubuntu1 [100 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.3ubuntu2 [18.2 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 powerpc 229-4ubuntu4 [188 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main util-linux powerpc 2.27.1-6ubuntu3 [781 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 powerpc 229-4ubuntu4 [54.2 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main udev powerpc 229-4ubuntu4 [958 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main systemd powerpc 229-4ubuntu4 [3323 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main initscripts powerpc 2.88dsf-59.3ubuntu2 [24.6 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libacl1 powerpc 2.2.52-3 [15.3 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libkmod2 powerpc 22-1ubuntu4 [37.5 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 powerpc 2:3.3.10-4ubuntu2 [30.1 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main procps powerpc 2:3.3.10-4ubuntu2 [212 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 powerpc 2.10.95-0ubuntu2 [29.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 powerpc 1:2.24-12 [12.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 powerpc 1.21-2ubuntu1 [33.3 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 powerpc 2.27.1-6ubuntu3 [101 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 powerpc 2.2.3-3ubuntu3 [34.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin powerpc 1:2.24-12 [19.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20160110 [13.5 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libpam-modules-bin powerpc 1.1.8-3.2ubuntu2 [33.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libpam-modules powerpc 1.1.8-3.2ubuntu2 [236 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main passwd powerpc 1:4.2-3.1ubuntu5 [732 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 powerpc 2.27.1-6ubuntu3 [16.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 powerpc 2.27.1-6ubuntu3 [99.6 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main mount powerpc 2.27.1-6ubuntu3 [115 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin powerpc 6.0+20160213-1ubuntu1 [129 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main sed powerpc 4.2.2-7 [135 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main tar powerpc 1.28-2.1 [192 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main liblz4-1 powerpc 0.0~r131-2 [33.2 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 powerpc 5.3.1-14ubuntu2 [51.0 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 powerpc 5.3.1-14ubuntu2 [7210 B] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 powerpc 5.3.1-14ubuntu2 [232 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 powerpc 5.3.1-14ubuntu2 [95.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 powerpc 2:6.1.0+dfsg-2 [199 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 powerpc 0.16.1-1 [428 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 powerpc 3.1.4-1 [176 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 powerpc 5.3.1-14ubuntu2 [8086 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 powerpc 5.3.1-14ubuntu2 [8131 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 powerpc 5.3.1-14ubuntu2 [7414 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 powerpc 5.3.1-14ubuntu2 [40.7 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main binutils powerpc 2.26-8ubuntu2 [2232 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev powerpc 5.3.1-14ubuntu2 [1376 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev powerpc 5.3.1-14ubuntu2 [500 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base powerpc 5.3.1-14ubuntu2 [16.9 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 powerpc 5.3.1-14ubuntu2 [401 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 powerpc 1.2.10ubuntu1 [674 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main apt powerpc 1.2.10ubuntu1 [1022 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main gpgv powerpc 1.4.20-1ubuntu3 [146 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main readline-common all 6.3-8ubuntu2 [51.4 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libreadline6 powerpc 6.3-8ubuntu2 [97.7 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libusb-0.1-4 powerpc 2:0.1.12-28 [15.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main gnupg powerpc 1.4.20-1ubuntu3 [579 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 powerpc 0.198ubuntu1 [6314 B] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main base-passwd powerpc 3.5.39 [51.1 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20160213-1ubuntu1 [16.7 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv powerpc 229-4ubuntu4 [16.4 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 powerpc 1.10.6-1ubuntu3 [143 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libnih-dbus1 powerpc 1.0.3-4.3ubuntu1 [13.1 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libnih1 powerpc 1.0.3-4.3ubuntu1 [43.8 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 powerpc 1.42.13-1ubuntu1 [65.5 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 powerpc 2:1.02.110-1ubuntu9 [120 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 powerpc 1.6.5-2 [306 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libpam-runtime all 1.1.8-3.2ubuntu2 [37.8 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 powerpc 2.4-2 [155 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libss2 powerpc 1.42.13-1ubuntu1 [69.6 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support powerpc 2.23-0ubuntu3 [6824 B] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main tzdata all 2016c-1 [168 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 powerpc 3.2.1-4 [17.0 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libhogweed4 powerpc 3.2-1 [130 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main libnettle6 powerpc 3.2-1 [114 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 powerpc 1.32-3ubuntu1 [42.8 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 powerpc 0.23.2-3 [84.8 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 powerpc 4.7-3 [39.4 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls30 powerpc 3.4.10-4ubuntu1 [435 kB] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 powerpc 1.2.54-1ubuntu1 [110 kB] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 powerpc 3.11.0-1ubuntu1 [349 kB] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 powerpc 1.0.2g-1ubuntu4 [753 kB] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 powerpc 1.13.2+dfsg-5 [102 kB] Get:116 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 powerpc 1.13.2+dfsg-5 [239 kB] Get:117 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 powerpc 1.13.2+dfsg-5 [29.4 kB] Get:118 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 powerpc 1.13.2+dfsg-5 [81.6 kB] Get:119 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 powerpc 1.5.9-8ubuntu1 [9890 B] Get:120 http://ftpmaster.internal/ubuntu/ xenial/main libroken18-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [38.7 kB] Get:121 http://ftpmaster.internal/ubuntu/ xenial/main libasn1-8-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [129 kB] Get:122 http://ftpmaster.internal/ubuntu/ xenial/main libhcrypto4-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [80.2 kB] Get:123 http://ftpmaster.internal/ubuntu/ xenial/main libheimbase1-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [26.4 kB] Get:124 http://ftpmaster.internal/ubuntu/ xenial/main libwind0-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [47.1 kB] Get:125 http://ftpmaster.internal/ubuntu/ xenial/main libhx509-5-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [91.9 kB] Get:126 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-26-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [174 kB] Get:127 http://ftpmaster.internal/ubuntu/ xenial/main libheimntlm0-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [14.8 kB] Get:128 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi3-heimdal powerpc 1.7~git20150920+dfsg-4ubuntu1 [82.2 kB] Get:129 http://ftpmaster.internal/ubuntu/ xenial/main libsasl2-modules-db powerpc 2.1.26.dfsg1-14build1 [14.0 kB] Get:130 http://ftpmaster.internal/ubuntu/ xenial/main libsasl2-2 powerpc 2.1.26.dfsg1-14build1 [43.7 kB] Get:131 http://ftpmaster.internal/ubuntu/ xenial/main libldap-2.4-2 powerpc 2.4.42+dfsg-2ubuntu3 [141 kB] Get:132 http://ftpmaster.internal/ubuntu/ xenial/main librtmp1 powerpc 2.4+20151223.gitfa8646d-1build1 [49.6 kB] Get:133 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls powerpc 7.47.0-1ubuntu2 [166 kB] Get:134 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https powerpc 1.2.10ubuntu1 [25.5 kB] Get:135 http://ftpmaster.internal/ubuntu/ xenial/main openssl powerpc 1.0.2g-1ubuntu4 [466 kB] Get:136 http://ftpmaster.internal/ubuntu/ xenial/main ca-certificates all 20160104ubuntu1 [191 kB] Get:137 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp powerpc 1.20-1 [143 kB] Get:138 http://ftpmaster.internal/ubuntu/ xenial/main cpp powerpc 4:5.3.1-1ubuntu1 [27.6 kB] Get:139 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup powerpc 2:1.02.110-1ubuntu9 [52.4 kB] Get:140 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.4ubuntu1 [584 kB] Get:141 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.4ubuntu1 [195 kB] Get:142 http://ftpmaster.internal/ubuntu/ xenial/main make powerpc 4.1-6 [141 kB] Get:143 http://ftpmaster.internal/ubuntu/ xenial/main gcc powerpc 4:5.3.1-1ubuntu1 [5234 B] Get:144 http://ftpmaster.internal/ubuntu/ xenial/main g++ powerpc 4:5.3.1-1ubuntu1 [1508 B] Get:145 http://ftpmaster.internal/ubuntu/ xenial/main optipng powerpc 0.7.6-1 [81.0 kB] Get:146 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.72 [8898 B] Get:147 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 129 [43.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 65.1 MB in 1min 13s (889 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11511 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu4_powerpc.deb ... Unpacking base-files (9.4ubuntu4) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu4) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11513 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27.1-6ubuntu3_powerpc.deb ... Unpacking bsdutils (1:2.27.1-6ubuntu3) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27.1-6ubuntu3) ... (Reading database ... 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Preparing to unpack .../libc6_2.23-0ubuntu3_powerpc.deb ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Unpacking libc6:powerpc (2.23-0ubuntu3) over (2.21-0ubuntu4) ... Setting up libc6:powerpc (2.23-0ubuntu3) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11522 files and directories currently installed.) Preparing to unpack .../libc-bin_2.23-0ubuntu3_powerpc.deb ... Unpacking libc-bin (2.23-0ubuntu3) over (2.21-0ubuntu4) ... Setting up libc-bin (2.23-0ubuntu3) ... Selecting previously unselected package gcc-6-base:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11518 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6-20160405-0ubuntu2_powerpc.deb ... Unpacking gcc-6-base:powerpc (6-20160405-0ubuntu2) ... Setting up gcc-6-base:powerpc (6-20160405-0ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11525 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6-20160405-0ubuntu2_powerpc.deb ... Unpacking libgcc1:powerpc (1:6-20160405-0ubuntu2) over (1:5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:powerpc (1:6-20160405-0ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11525 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.13-1ubuntu1_powerpc.deb ... Unpacking e2fslibs:powerpc (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up e2fslibs:powerpc (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11525 files and directories currently installed.) Preparing to unpack .../grep_2.24-1_powerpc.deb ... Unpacking grep (2.24-1) over (2.21-2) ... Setting up grep (2.24-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11525 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.3ubuntu2_powerpc.deb ... Unpacking sysvinit-utils (2.88dsf-59.3ubuntu2) over (2.88dsf-59.2ubuntu2) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.29ubuntu1_all.deb ... Unpacking init-system-helpers (1.29ubuntu1) ... Replacing files in old package sysv-rc (2.88dsf-59.2ubuntu2) ... Setting up init-system-helpers (1.29ubuntu1) ... dpkg: perl-modules: dependency problems, but removing anyway as you requested: perl depends on perl-modules (>= 5.20.2-6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11533 files and directories currently installed.) Removing perl-modules (5.20.2-6) ... Purging configuration files for perl-modules (5.20.2-6) ... (Reading database ... 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Unpacking libperl5.22:powerpc (5.22.1-9) ... Preparing to unpack .../perl-base_5.22.1-9_powerpc.deb ... Unpacking perl-base (5.22.1-9) over (5.20.2-6) ... Setting up perl-base (5.22.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../init_1.29ubuntu1_powerpc.deb ... Unpacking init (1.29ubuntu1) over (1.23ubuntu3) ... Setting up init (1.29ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.4.5-1ubuntu2_all.deb ... Unpacking libaudit-common (1:2.4.5-1ubuntu2) over (1:2.4.2-1ubuntu1) ... Setting up libaudit-common (1:2.4.5-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4.5-1ubuntu2_powerpc.deb ... Unpacking libaudit1:powerpc (1:2.4.5-1ubuntu2) over (1:2.4.2-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libaudit1:powerpc (1:2.4.5-1ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../debconf_1.5.58ubuntu1_all.deb ... Unpacking debconf (1.5.58ubuntu1) over (1.5.57ubuntu1) ... Setting up debconf (1.5.58ubuntu1) ... Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.2ubuntu2_powerpc.deb ... Unpacking libpam0g:powerpc (1.1.8-3.2ubuntu2) over (1.1.8-3.1ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpam0g:powerpc (1.1.8-3.2ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.38-3.1_powerpc.deb ... Unpacking libpcre3:powerpc (2:8.38-3.1) over (2:8.35-7.1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpcre3:powerpc (2:8.38-3.1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3build2_powerpc.deb ... Unpacking libselinux1:powerpc (2.4-3build2) over (2.3-2build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libselinux1:powerpc (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.27.1-6ubuntu3_powerpc.deb ... Unpacking libfdisk1:powerpc (2.27.1-6ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:powerpc (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20160213-1ubuntu1_powerpc.deb ... Unpacking libtinfo5:powerpc (6.0+20160213-1ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libtinfo5:powerpc (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160213-1ubuntu1_powerpc.deb ... Unpacking libncurses5:powerpc (6.0+20160213-1ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libncurses5:powerpc (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160213-1ubuntu1_powerpc.deb ... Unpacking libncursesw5:powerpc (6.0+20160213-1ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libncursesw5:powerpc (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.3ubuntu2_all.deb ... Unpacking sysv-rc (2.88dsf-59.3ubuntu2) over (2.88dsf-59.2ubuntu2) ... Setting up sysvinit-utils (2.88dsf-59.3ubuntu2) ... Setting up sysv-rc (2.88dsf-59.3ubuntu2) ... Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... 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Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/X11/xinit/xinitrc.d/50-systemd-user.sh ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12123 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.3ubuntu2_powerpc.deb ... Unpacking initscripts (2.88dsf-59.3ubuntu2) over (2.88dsf-59.2ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... Setting up initscripts (2.88dsf-59.3ubuntu2) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/default/rcS ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... 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Preparing to unpack .../libapparmor1_2.10.95-0ubuntu2_powerpc.deb ... Unpacking libapparmor1:powerpc (2.10.95-0ubuntu2) over (2.10-0ubuntu6) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libapparmor1:powerpc (2.10.95-0ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.24-12_powerpc.deb ... Unpacking libcap2:powerpc (1:2.24-12) over (1:2.24-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcap2:powerpc (1:2.24-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.21-2ubuntu1_powerpc.deb ... Unpacking libgpg-error0:powerpc (1.21-2ubuntu1) over (1.19-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgpg-error0:powerpc (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../libmount1_2.27.1-6ubuntu3_powerpc.deb ... Unpacking libmount1:powerpc (2.27.1-6ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libmount1:powerpc (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.2.3-3ubuntu3_powerpc.deb ... Unpacking libseccomp2:powerpc (2.2.3-3ubuntu3) over (2.2.3-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libseccomp2:powerpc (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-12_powerpc.deb ... Unpacking libcap2-bin (1:2.24-12) over (1:2.24-9) ... Setting up libcap2-bin (1:2.24-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12132 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110_all.deb ... Unpacking lsb-base (9.20160110) over (4.1+Debian11ubuntu8) ... Setting up lsb-base (9.20160110) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12134 files and directories currently installed.) Preparing to unpack .../libblkid1_2.27.1-6ubuntu3_powerpc.deb ... Unpacking libblkid1:powerpc (2.27.1-6ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libblkid1:powerpc (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12134 files and directories currently installed.) Preparing to unpack .../mount_2.27.1-6ubuntu3_powerpc.deb ... Unpacking mount (2.27.1-6ubuntu3) over (2.26.2-6ubuntu3) ... Setting up mount (2.27.1-6ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12134 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160213-1ubuntu1_powerpc.deb ... Unpacking ncurses-bin (6.0+20160213-1ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-bin (6.0+20160213-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12130 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7_powerpc.deb ... Unpacking sed (4.2.2-7) over (4.2.2-6.1) ... Setting up sed (4.2.2-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12130 files and directories currently installed.) Preparing to unpack .../tar_1.28-2.1_powerpc.deb ... Unpacking tar (1.28-2.1) over (1.27.1-2) ... Setting up tar (1.28-2.1) ... Selecting previously unselected package liblz4-1:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12130 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2_powerpc.deb ... Unpacking liblz4-1:powerpc (0.0~r131-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up liblz4-1:powerpc (0.0~r131-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12135 files and directories currently installed.) Preparing to unpack .../libgomp1_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libgomp1:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libatomic1_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libatomic1:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libasan2_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libasan2:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libubsan0_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libubsan0:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_powerpc.deb ... Unpacking libgmp10:powerpc (2:6.1.0+dfsg-2) over (2:6.0.0+dfsg-7) ... Selecting previously unselected package libisl15:powerpc. Preparing to unpack .../libisl15_0.16.1-1_powerpc.deb ... Unpacking libisl15:powerpc (0.16.1-1) ... Preparing to unpack .../libmpfr4_3.1.4-1_powerpc.deb ... Unpacking libmpfr4:powerpc (3.1.4-1) over (3.1.3-1) ... Preparing to unpack .../g++-5_5.3.1-14ubuntu2_powerpc.deb ... Unpacking g++-5 (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5_5.3.1-14ubuntu2_powerpc.deb ... Unpacking gcc-5 (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../cpp-5_5.3.1-14ubuntu2_powerpc.deb ... Unpacking cpp-5 (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libcc1-0_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libcc1-0:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../binutils_2.26-8ubuntu2_powerpc.deb ... Unpacking binutils (2.26-8ubuntu2) over (2.25.1-6ubuntu1) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libstdc++-5-dev:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libgcc-5-dev:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5-base_5.3.1-14ubuntu2_powerpc.deb ... Unpacking gcc-5-base:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up gcc-5-base:powerpc (5.3.1-14ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12107 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.3.1-14ubuntu2_powerpc.deb ... Unpacking libstdc++6:powerpc (5.3.1-14ubuntu2) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libstdc++6:powerpc (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12151 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.20-1ubuntu3_powerpc.deb ... Unpacking gpgv (1.4.20-1ubuntu3) over (1.4.18-7ubuntu1) ... Setting up gpgv (1.4.20-1ubuntu3) ... (Reading database ... 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Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.110-1ubuntu9_powerpc.deb ... Unpacking libdevmapper1.02.1:powerpc (2:1.02.110-1ubuntu9) over (2:1.02.99-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.110-1ubuntu9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12150 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.5-2_powerpc.deb ... Unpacking libgcrypt20:powerpc (1.6.5-2) over (1.6.3-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcrypt20:powerpc (1.6.5-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12150 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-3.2ubuntu2_all.deb ... 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Preparing to unpack .../dmsetup_2%3a1.02.110-1ubuntu9_powerpc.deb ... Unpacking dmsetup (2:1.02.110-1ubuntu9) over (2:1.02.99-1ubuntu1) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../make_4.1-6_powerpc.deb ... Unpacking make (4.1-6) over (4.0-8.2) ... Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_powerpc.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.3.1-1ubuntu1) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.3.1-1ubuntu1_powerpc.deb ... Unpacking g++ (4:5.3.1-1ubuntu1) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../optipng_0.7.6-1_powerpc.deb ... Unpacking optipng (0.7.6-1) over (0.7.5-1) ... Preparing to unpack .../pkg-create-dbgsym_0.72_all.deb ... Unpacking pkg-create-dbgsym (0.72) over (0.69) ... Preparing to unpack .../pkgbinarymangler_129_all.deb ... Unpacking pkgbinarymangler (129) over (122) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libc-dev-bin (2.23-0ubuntu3) ... Setting up linux-libc-dev:powerpc (4.4.0-18.34) ... Setting up libc6-dev:powerpc (2.23-0ubuntu3) ... Setting up perl-modules-5.22 (5.22.1-9) ... Setting up libperl5.22:powerpc (5.22.1-9) ... Setting up perl (5.22.1-9) ... Setting up libprocps4:powerpc (2:3.3.10-4ubuntu2) ... Setting up procps (2:3.3.10-4ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (229-4ubuntu4) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up libgomp1:powerpc (5.3.1-14ubuntu2) ... Setting up libatomic1:powerpc (5.3.1-14ubuntu2) ... Setting up libasan2:powerpc (5.3.1-14ubuntu2) ... Setting up libubsan0:powerpc (5.3.1-14ubuntu2) ... Setting up libgmp10:powerpc (2:6.1.0+dfsg-2) ... Setting up libisl15:powerpc (0.16.1-1) ... Setting up libmpfr4:powerpc (3.1.4-1) ... Setting up cpp-5 (5.3.1-14ubuntu2) ... Setting up libcc1-0:powerpc (5.3.1-14ubuntu2) ... Setting up binutils (2.26-8ubuntu2) ... Setting up libgcc-5-dev:powerpc (5.3.1-14ubuntu2) ... Setting up gcc-5 (5.3.1-14ubuntu2) ... Setting up libstdc++-5-dev:powerpc (5.3.1-14ubuntu2) ... Setting up g++-5 (5.3.1-14ubuntu2) ... Setting up apt (1.2.10ubuntu1) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Removing obsolete conffile /etc/apt/apt.conf.d/20changelog ... Removing obsolete conffile /etc/cron.daily/apt ... Setting up libdbus-1-3:powerpc (1.10.6-1ubuntu3) ... Setting up libnih1:powerpc (1.0.3-4.3ubuntu1) ... Setting up libnih-dbus1:powerpc (1.0.3-4.3ubuntu1) ... Setting up libffi6:powerpc (3.2.1-4) ... Setting up libnettle6:powerpc (3.2-1) ... Setting up libhogweed4:powerpc (3.2-1) ... Setting up libidn11:powerpc (1.32-3ubuntu1) ... Setting up libp11-kit0:powerpc (0.23.2-3) ... Setting up libtasn1-6:powerpc (4.7-3) ... Setting up libgnutls30:powerpc (3.4.10-4ubuntu1) ... Setting up libpng12-0:powerpc (1.2.54-1ubuntu1) ... Setting up libsqlite3-0:powerpc (3.11.0-1ubuntu1) ... Setting up libssl1.0.0:powerpc (1.0.2g-1ubuntu4) ... Setting up libkrb5support0:powerpc (1.13.2+dfsg-5) ... Setting up libk5crypto3:powerpc (1.13.2+dfsg-5) ... Setting up libkeyutils1:powerpc (1.5.9-8ubuntu1) ... Setting up libkrb5-3:powerpc (1.13.2+dfsg-5) ... Setting up libgssapi-krb5-2:powerpc (1.13.2+dfsg-5) ... Setting up libroken18-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libasn1-8-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libhcrypto4-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libheimbase1-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libwind0-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libhx509-5-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libkrb5-26-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libheimntlm0-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libgssapi3-heimdal:powerpc (1.7~git20150920+dfsg-4ubuntu1) ... Setting up libsasl2-modules-db:powerpc (2.1.26.dfsg1-14build1) ... Setting up libsasl2-2:powerpc (2.1.26.dfsg1-14build1) ... Setting up libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu3) ... Setting up librtmp1:powerpc (2.4+20151223.gitfa8646d-1build1) ... Setting up libcurl3-gnutls:powerpc (7.47.0-1ubuntu2) ... Setting up apt-transport-https (1.2.10ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu4) ... Setting up ca-certificates (20160104ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.3.1-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu9) ... Setting up libdpkg-perl (1.18.4ubuntu1) ... Setting up make (4.1-6) ... Setting up dpkg-dev (1.18.4ubuntu1) ... Setting up gcc (4:5.3.1-1ubuntu1) ... Setting up g++ (4:5.3.1-1ubuntu1) ... Setting up optipng (0.7.6-1) ... Setting up pkg-create-dbgsym (0.72) ... Setting up pkgbinarymangler (129) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-4ubuntu4) ... Processing triggers for ca-certificates (20160104ubuntu1) ... Updating certificates in /etc/ssl/certs... 6 added, 20 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9431742', 'powerpc', 'xenial', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=xenial', '--purge=never', '--nolog', 'bcftools_1.2-2.dsc'] Initiating build PACKAGEBUILD-9431742 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 4.4.0-18-powerpc64-smp #34~14.04.1-Ubuntu SMP Thu Apr 7 18:53:24 UTC 2016 ppc sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on fisher04.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bcftools 1.2-2 (powerpc) 16 Apr 2016 03:17 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bcftools Version: 1.2-2 Source Version: 1.2-2 Distribution: xenial Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/bcftools-8tNZyl/bcftools-1.2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/bcftools-8tNZyl' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9431742/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── bcftools_1.2-2.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-8fDOmT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ Packages [528 B] Fetched 2855 B in 0s (210 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libgnutls-deb0-28 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-8fDOmT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12149 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev, libhts-dev (>= 1.2.1), libgsl-dev, tabix, libio-pty-perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev, libhts-dev (>= 1.2.1), libgsl-dev, tabix, libio-pty-perl dpkg-deb: building package 'sbuild-build-depends-bcftools-dummy' in '/«BUILDDIR»/resolver-rlIMex/apt_archive/sbuild-build-depends-bcftools-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ Sources [452 B] Get:5 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ Packages [719 B] Fetched 3290 B in 0s (263 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bcftools build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libgnutls-deb0-28 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl2 libhts-dev libhts1 libicu55 libio-pty-perl libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf tabix zlib1g-dev Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc autopoint groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl2 libhts-dev libhts1 libicu55 libio-pty-perl libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bcftools-dummy tabix zlib1g-dev 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 16.5 MB of archives. After this operation, 71.3 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-bcftools-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-rlIMex/apt_archive ./ sbuild-build-depends-bcftools-dummy 0.invalid.0 [968 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main powerpc groff-base powerpc 1.22.3-7 [1201 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main powerpc bsdmainutils powerpc 9.0.6ubuntu3 [172 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main powerpc libmagic1 powerpc 1:5.25-2ubuntu1 [214 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main powerpc file powerpc 1:5.25-2ubuntu1 [21.1 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main powerpc libasprintf0v5 powerpc 0.19.7-2ubuntu3 [6592 B] Get:10 http://ftpmaster.internal/ubuntu xenial/main powerpc gettext-base powerpc 0.19.7-2ubuntu3 [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main powerpc libglib2.0-0 powerpc 2.48.0-1ubuntu4 [964 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main powerpc libicu55 powerpc 55.1-7 [7454 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main powerpc libxml2 powerpc 2.9.3+dfsg1-1 [573 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main powerpc autotools-dev all 20150820.1 [39.8 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main powerpc libcroco3 powerpc 0.6.11-1 [69.3 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main powerpc gettext powerpc 0.19.7-2ubuntu3 [1013 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main powerpc po-debconf all 1.0.19 [234 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main powerpc libarchive-zip-perl all 1.56-2 [84.1 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main powerpc libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main powerpc dh-strip-nondeterminism all 0.015-1 [4864 B] Get:23 http://ftpmaster.internal/ubuntu xenial/main powerpc debhelper all 9.20160115ubuntu3 [739 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main powerpc libgsl2 powerpc 2.1+dfsg-2 [780 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main powerpc libgsl-dev powerpc 2.1+dfsg-2 [882 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/universe powerpc libhts1 powerpc 1.2.1-2ubuntu1 [208 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/universe powerpc libhts-dev powerpc 1.2.1-2ubuntu1 [261 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main powerpc libio-pty-perl powerpc 1:1.08-1.1build1 [30.0 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/universe powerpc tabix powerpc 1.2.1-2ubuntu1 [198 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main powerpc zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu4 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.5 MB in 28s (571 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12149 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_powerpc.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_powerpc.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.4.1-2_powerpc.deb ... Unpacking libpipeline1:powerpc (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_powerpc.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:powerpc. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_powerpc.deb ... Unpacking libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:powerpc. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:powerpc. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_powerpc.deb ... Unpacking libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_powerpc.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:powerpc. Preparing to unpack .../libglib2.0-0_2.48.0-1ubuntu4_powerpc.deb ... Unpacking libglib2.0-0:powerpc (2.48.0-1ubuntu4) ... Selecting previously unselected package libicu55:powerpc. Preparing to unpack .../libicu55_55.1-7_powerpc.deb ... Unpacking libicu55:powerpc (55.1-7) ... Selecting previously unselected package libxml2:powerpc. Preparing to unpack .../libxml2_2.9.3+dfsg1-1_powerpc.deb ... Unpacking libxml2:powerpc (2.9.3+dfsg1-1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20150820.1_all.deb ... Unpacking autotools-dev (20150820.1) ... Selecting previously unselected package libcroco3:powerpc. Preparing to unpack .../libcroco3_0.6.11-1_powerpc.deb ... Unpacking libcroco3:powerpc (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.7-2ubuntu3_powerpc.deb ... Unpacking gettext (0.19.7-2ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ... Unpacking libarchive-zip-perl (1.56-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.015-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.015-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.015-1_all.deb ... Unpacking dh-strip-nondeterminism (0.015-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160115ubuntu3_all.deb ... Unpacking debhelper (9.20160115ubuntu3) ... Selecting previously unselected package libgsl2:powerpc. Preparing to unpack .../libgsl2_2.1+dfsg-2_powerpc.deb ... Unpacking libgsl2:powerpc (2.1+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../libgsl-dev_2.1+dfsg-2_powerpc.deb ... Unpacking libgsl-dev (2.1+dfsg-2) ... Selecting previously unselected package libhts1:powerpc. Preparing to unpack .../libhts1_1.2.1-2ubuntu1_powerpc.deb ... Unpacking libhts1:powerpc (1.2.1-2ubuntu1) ... Selecting previously unselected package libhts-dev:powerpc. Preparing to unpack .../libhts-dev_1.2.1-2ubuntu1_powerpc.deb ... Unpacking libhts-dev:powerpc (1.2.1-2ubuntu1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../libio-pty-perl_1%3a1.08-1.1build1_powerpc.deb ... Unpacking libio-pty-perl (1:1.08-1.1build1) ... Selecting previously unselected package tabix. Preparing to unpack .../tabix_1.2.1-2ubuntu1_powerpc.deb ... Unpacking tabix (1.2.1-2ubuntu1) ... Selecting previously unselected package zlib1g-dev:powerpc. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4_powerpc.deb ... Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Selecting previously unselected package sbuild-build-depends-bcftools-dummy. Preparing to unpack .../sbuild-build-depends-bcftools-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-bcftools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up libmagic1:powerpc (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:powerpc (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu55:powerpc (55.1-7) ... Setting up libxml2:powerpc (2.9.3+dfsg1-1) ... Setting up autotools-dev (20150820.1) ... Setting up libcroco3:powerpc (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libgsl2:powerpc (2.1+dfsg-2) ... Setting up libgsl-dev (2.1+dfsg-2) ... Setting up libhts1:powerpc (1.2.1-2ubuntu1) ... Setting up libhts-dev:powerpc (1.2.1-2ubuntu1) ... Setting up libio-pty-perl (1:1.08-1.1build1) ... Setting up tabix (1.2.1-2ubuntu1) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up sbuild-build-depends-bcftools-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.015-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.4.0-18-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.26-8ubuntu2 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-14ubuntu2 gcc-5_5.3.1-14ubuntu2 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-14ubuntu2 libstdc++6_5.3.1-14ubuntu2 linux-libc-dev_4.4.0-18.34 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.10ubuntu1 apt-transport-https_1.2.10ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu4 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.26-8ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-14ubuntu2 dash_0.5.8-2.1ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20160115ubuntu3 debianutils_4.7 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu9 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-14ubuntu2 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-14ubuntu2 gcc-5-base_5.3.1-14ubuntu2 gcc-6-base_6-20160405-0ubuntu2 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.24-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.29ubuntu1 init-system-helpers_1.29ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.2.10ubuntu1 libarchive-zip-perl_1.56-2 libasan2_5.3.1-14ubuntu2 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_5.3.1-14ubuntu2 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-14ubuntu2 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu3 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu9 libdpkg-perl_1.18.4ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgcc-5-dev_5.3.1-14ubuntu2 libgcc1_1:6-20160405-0ubuntu2 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.15-5ubuntu2 libgnutls30_3.4.10-4ubuntu1 libgomp1_5.3.1-14ubuntu2 libgpg-error0_1.21-2ubuntu1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhts-dev_1.2.1-2ubuntu1 libhts1_1.2.1-2ubuntu1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu55_55.1-7 libidn11_1.32-3ubuntu1 libio-pty-perl_1:1.08-1.1build1 libisl13_0.14-2 libisl15_0.16.1-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libnih-dbus1_1.0.3-4.3ubuntu1 libnih1_1.0.3-4.3ubuntu1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-14ubuntu2 libstdc++6_5.3.1-14ubuntu2 libsystemd0_229-4ubuntu4 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libubsan0_5.3.1-14ubuntu2 libudev1_229-4ubuntu4 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_4.4.0-18.34 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 make_4.1-6 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-bcftools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 systemd_229-4ubuntu4 systemd-sysv_229-4ubuntu4 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.3ubuntu2 tabix_1.2.1-2ubuntu1 tar_1.28-2.1 tzdata_2016c-1 ubuntu-keyring_2012.05.19 udev_229-4ubuntu4 util-linux_2.27.1-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sat Jan 23 02:54:32 2016 UTC using RSA key ID AFE826FB gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bcftools_1.2-2.dsc dpkg-source: info: extracting bcftools in bcftools-1.2 dpkg-source: info: unpacking bcftools_1.2.orig.tar.gz dpkg-source: info: unpacking bcftools_1.2-2.debian.tar.xz dpkg-source: info: applying improve-plugin-support.patch dpkg-source: info: applying external-libs.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying tests-pluginpath.patch dpkg-source: info: applying spelling.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package bcftools dpkg-buildpackage: source version 1.2-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build bcftools-1.2 dpkg-buildpackage: host architecture powerpc fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel make -j8 distclean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f test/*.o test/*~ test/test-rbuf rm -f plugins/*.so plugins/*.P plugins/*.dSYM rm -f gmon.out *.o *~ bcftools version.h plugins/*.so plugins/*.P rm -rf *.dSYM plugins/*.dSYM test/*.dSYM rm -f TAGS make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_auto_configure -a -O--parallel dh_auto_build -a -O--parallel make -j8 make[1]: Entering directory '/«PKGBUILDDIR»' echo '#define BCFTOOLS_VERSION "1.2"' > version.h cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfindex.c -o vcfindex.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include tabix.c -o tabix.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfstats.c -o vcfstats.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfisec.c -o vcfisec.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfmerge.c -o vcfmerge.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfquery.c -o vcfquery.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcffilter.c -o vcffilter.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include filter.c -o filter.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfsom.c -o vcfsom.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfnorm.c -o vcfnorm.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfgtcheck.c -o vcfgtcheck.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfview.c -o vcfview.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfannotate.c -o vcfannotate.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfroh.c -o vcfroh.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfconcat.c -o vcfconcat.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfcall.c -o vcfcall.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include mcall.c -o mcall.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcmp.c -o vcmp.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include gvcf.c -o gvcf.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include reheader.c -o reheader.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include convert.c -o convert.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfconvert.c -o vcfconvert.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include tsv2vcf.c -o tsv2vcf.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfcnv.c -o vcfcnv.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include HMM.c -o HMM.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include vcfplugin.c -o vcfplugin.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include consensus.c -o consensus.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include ploidy.c -o ploidy.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include version.c -o version.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include ccall.c -o ccall.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include em.c -o em.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include prob1.c -o prob1.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include kmin.c -o kmin.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include polysomy.c -o polysomy.o cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include test/test-rbuf.c -o test/test-rbuf.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/tag2tag.so version.c plugins/tag2tag.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -o plugins/fixploidy.so ploidy.c version.c plugins/fixploidy.c -lhts -Wl,-Bsymbolic-functions -Wl,-z,relro cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/frameshifts.so version.c plugins/frameshifts.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -o plugins/vcf2sex.so ploidy.c version.c plugins/vcf2sex.c -lhts -Wl,-Bsymbolic-functions -Wl,-z,relro cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/counts.so version.c plugins/counts.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/missing2ref.so version.c plugins/missing2ref.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/dosage.so version.c plugins/dosage.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include -fPIC -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -I. -I/usr/include main.c -o main.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -o test/test-rbuf -lm -ldl test/test-rbuf.o cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o HMM.o vcfplugin.o consensus.o ploidy.o version.o ccall.o em.o prob1.o kmin.o polysomy.o -lpthread -lz -lm -ldl -lhts -lgsl -lgslcblas -Wl,-Bsymbolic-functions -Wl,-z,relro make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -a -O--parallel make -j8 test make[1]: Entering directory '/«PKGBUILDDIR»' ./test/test.pl --exec bgzip=/usr/bin/bgzip --exec tabix=/usr/bin/tabix test_usage: bcftools .. ok test_usage_subcommand: bcftools index .. ok test_usage_subcommand: bcftools annotate .. ok test_usage_subcommand: bcftools concat .. ok test_usage_subcommand: bcftools convert .. ok test_usage_subcommand: bcftools isec .. ok test_usage_subcommand: bcftools merge .. ok test_usage_subcommand: bcftools norm .. ok test_usage_subcommand: bcftools plugin .. ok test_usage_subcommand: bcftools query .. ok test_usage_subcommand: bcftools reheader .. ok test_usage_subcommand: bcftools view .. ok test_usage_subcommand: bcftools call .. ok test_usage_subcommand: bcftools consensus .. ok test_usage_subcommand: bcftools filter .. ok test_usage_subcommand: bcftools gtcheck .. ok test_usage_subcommand: bcftools roh .. ok test_usage_subcommand: bcftools stats .. ok test_tabix: /usr/bin/tabix /tmp/tL2FYX_V3n/merge.a.vcf.gz 2:3199812-3199812 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/merge.a.bcf 2:3199812-3199812 The outputs differ: /«PKGBUILDDIR»/test/tabix.2.3199812.out /«PKGBUILDDIR»/test/tabix.2.3199812.out.new .. failed ... test_tabix: /usr/bin/tabix /tmp/tL2FYX_V3n/merge.a.vcf.gz 1:3000151-3000151 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/merge.a.bcf 1:3000151-3000151 The outputs differ: /«PKGBUILDDIR»/test/tabix.1.3000151.out /«PKGBUILDDIR»/test/tabix.1.3000151.out.new .. failed ... test_tabix: /usr/bin/tabix /tmp/tL2FYX_V3n/large_chrom_tbi_limit.vcf.gz chr11:1-536870912 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/large_chrom_tbi_limit.bcf chr11:1-536870912 .. ok test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/large_chrom_csi_limit.vcf.gz chr20:1-2147483647 The outputs differ: /«PKGBUILDDIR»/test/large_chrom_csi_limit.20.1.2147483647.out /«PKGBUILDDIR»/test/large_chrom_csi_limit.20.1.2147483647.out.new .. failed ... test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/large_chrom_csi_limit.bcf chr20:1-2147483647 .. ok test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/large_chrom_csi_limit.vcf.gz chr20 The outputs differ: /«PKGBUILDDIR»/test/large_chrom.20.1.2147483647.out /«PKGBUILDDIR»/test/large_chrom.20.1.2147483647.out.new .. failed ... test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/tL2FYX_V3n/large_chrom_csi_limit.bcf chr20 .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/idx.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/idx.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/idx.out /«PKGBUILDDIR»/test/idx.out.new .. failed ... test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/idx.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/idx.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/idx_count.out /«PKGBUILDDIR»/test/idx_count.out.new .. failed ... test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/idx.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/idx_count.out /«PKGBUILDDIR»/test/idx_count.out.new .. failed ... test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/idx.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/tL2FYX_V3n/empty.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/tL2FYX_V3n/empty.bcf .. ok test_vcf_check: /«PKGBUILDDIR»/bcftools stats -s - /tmp/tL2FYX_V3n/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' .. ok test_vcf_check: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' .. ok test_vcf_stats: /«PKGBUILDDIR»/bcftools stats -s - /tmp/tL2FYX_V3n/stats.a.vcf.gz /tmp/tL2FYX_V3n/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID ' .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -i"STRLEN(REF)==2" /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -c both /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -c both /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -c any /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -c any /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -C -c any /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -C -c any /tmp/tL2FYX_V3n/isec.a.vcf.gz /tmp/tL2FYX_V3n/isec.b.vcf.gz Note: -w option not given, printing list of sites... .. ok test_vcf_isec2: /«PKGBUILDDIR»/bcftools isec -T /tmp/tL2FYX_V3n/isec.tab.gz /tmp/tL2FYX_V3n/isec.a.vcf.gz 2>/dev/null | grep -v ^##bcftools_ .. ok test_vcf_isec2: /«PKGBUILDDIR»/bcftools isec -Ob -T /tmp/tL2FYX_V3n/isec.tab.gz /tmp/tL2FYX_V3n/isec.a.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples /tmp/tL2FYX_V3n/merge.a.vcf.gz /tmp/tL2FYX_V3n/merge.b.vcf.gz /tmp/tL2FYX_V3n/merge.c.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples /tmp/tL2FYX_V3n/merge.a.vcf.gz /tmp/tL2FYX_V3n/merge.b.vcf.gz /tmp/tL2FYX_V3n/merge.c.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples -m none /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m none /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples -m both /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m both /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples -m all /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m all /tmp/tL2FYX_V3n/merge.2.a.vcf.gz /tmp/tL2FYX_V3n/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples -i TR:sum,TA:sum,TG:sum /tmp/tL2FYX_V3n/merge.3.a.vcf.gz /tmp/tL2FYX_V3n/merge.3.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/tL2FYX_V3n/merge.3.a.vcf.gz /tmp/tL2FYX_V3n/merge.3.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --force-samples -m id /tmp/tL2FYX_V3n/merge.4.a.vcf.gz /tmp/tL2FYX_V3n/merge.4.b.vcf.gz | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/merge.4.out /«PKGBUILDDIR»/test/merge.4.out.new .. failed ... test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m id /tmp/tL2FYX_V3n/merge.4.a.vcf.gz /tmp/tL2FYX_V3n/merge.4.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/merge.4.out /«PKGBUILDDIR»/test/merge.4.out.new .. failed ... test_vcf_query: /«PKGBUILDDIR»/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XRI\n' -i'XRI[*]>1111' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[3]!~"H"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[3]!~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"HI,JK"' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"HI,JK"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT~"CT"' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT~"CT"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[0]))=10' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[0]))=10' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/tL2FYX_V3n/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/tL2FYX_V3n/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/tL2FYX_V3n/view.vectors.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT ="1"' /tmp/tL2FYX_V3n/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT ="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT!="1"' /tmp/tL2FYX_V3n/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT!="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT ="1"' /tmp/tL2FYX_V3n/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT ="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT!="1"' /tmp/tL2FYX_V3n/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT!="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/tL2FYX_V3n/query.2.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/query.2.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -f /«PKGBUILDDIR»/test/norm.fa /tmp/tL2FYX_V3n/norm.vcf.gz | grep -v ^##bcftools_ Lines total/modified/skipped: 21/13/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -f /«PKGBUILDDIR»/test/norm.fa /tmp/tL2FYX_V3n/norm.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ Lines total/modified/skipped: 21/13/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -m- /tmp/tL2FYX_V3n/norm.split.vcf.gz | grep -v ^##bcftools_ Lines total/modified/skipped: 18/0/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m- /tmp/tL2FYX_V3n/norm.split.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ Lines total/modified/skipped: 18/0/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -m+ /tmp/tL2FYX_V3n/norm.merge.vcf.gz | grep -v ^##bcftools_ Lines total/modified/skipped: 26/0/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ /tmp/tL2FYX_V3n/norm.merge.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ Lines total/modified/skipped: 26/0/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -m+ -s /tmp/tL2FYX_V3n/norm.merge.vcf.gz | grep -v ^##bcftools_ Lines total/modified/skipped: 26/0/0 .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ -s /tmp/tL2FYX_V3n/norm.merge.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ Lines total/modified/skipped: 26/0/0 .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -aUc1 -C1 -s NA00002 -v snps /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -f PASS -Xks NA00003 /tmp/tL2FYX_V3n/view.vcf.gz -r20,Y | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -f PASS -Xks NA00003 /tmp/tL2FYX_V3n/view.vcf.gz -r20,Y | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -xs NA00003 /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -xs NA00003 /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -p /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -p /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -P /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -P /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -hm2 -M2 -q0.3 -Q0.7 /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Hu /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -GVsnps /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -GVsnps /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -ne 'INDEL=1 || PV4[0]<0.006' /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -s ^NA00003 /tmp/tL2FYX_V3n/view.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -s ^NA00003 /tmp/tL2FYX_V3n/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view /tmp/tL2FYX_V3n/view.omitgenotypes.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/view.omitgenotypes.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -asA /tmp/tL2FYX_V3n/view.vectors.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -asA /tmp/tL2FYX_V3n/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -asB /tmp/tL2FYX_V3n/view.vectors.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -asB /tmp/tL2FYX_V3n/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -i'FMT/FGS[0]="AAAAAA"' /tmp/tL2FYX_V3n/view.filter.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -i'FMT/FGS[2]="C"' /tmp/tL2FYX_V3n/view.filter.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -i'FMT/FGS[4]="EE"' /tmp/tL2FYX_V3n/view.filter.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -i'FMT/FRS[1]="BB"' /tmp/tL2FYX_V3n/view.filter.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -i'TXT0="text"' /tmp/tL2FYX_V3n/view.filter.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -T /«PKGBUILDDIR»/test/view.chrs.tab /tmp/tL2FYX_V3n/view.chrs.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -T /«PKGBUILDDIR»/test/view.chrs.tab /tmp/tL2FYX_V3n/view.chrs.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'TXT0="text"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'TXT0="text"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FRS[1]="BB"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FRS[1]="BB"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[0]="AAAAAA"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[0]="AAAAAA"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[1]="BBB"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[1]="BBB"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[4]="EE"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[4]="EE"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/STR="XX"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/STR="XX"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -C5:nonmajor /tmp/tL2FYX_V3n/view.minmaxac.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -c6:nonmajor /tmp/tL2FYX_V3n/view.minmaxac.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -H -q0.3:major /tmp/tL2FYX_V3n/view.minmaxac.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -mv /«PKGBUILDDIR»/test/mpileup.vcf | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mv /«PKGBUILDDIR»/test/mpileup.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -mvg0 /«PKGBUILDDIR»/test/mpileup.vcf | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mvg0 /«PKGBUILDDIR»/test/mpileup.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call_cAls: /«PKGBUILDDIR»/bcftools call -mA -C alleles -T /tmp/tL2FYX_V3n/mpileup.tab.gz /«PKGBUILDDIR»/test/mpileup.vcf | grep -v ^##bcftools_ .. ok test_vcf_call_cAls: /«PKGBUILDDIR»/bcftools call -Ob -mA -C alleles -T /tmp/tL2FYX_V3n/mpileup.tab.gz /«PKGBUILDDIR»/test/mpileup.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -mx -g2 -G2 /«PKGBUILDDIR»/test/filter.1.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -mx -g2 -G2 /«PKGBUILDDIR»/test/filter.1.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /«PKGBUILDDIR»/test/filter.2.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /«PKGBUILDDIR»/test/regions.tab /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /«PKGBUILDDIR»/test/regions.tab .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /«PKGBUILDDIR»/test/regions.tab /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.tab.gz /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.tab.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/tL2FYX_V3n/regions.tab.gz /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.bed /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.bed .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/tL2FYX_V3n/regions.bed /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.bed.gz /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/tL2FYX_V3n/regions.bed.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/tL2FYX_V3n/regions.bed.gz /tmp/tL2FYX_V3n/regions.vcf.gz .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annotate.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annotate.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annotate2.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,FROM,TO,T_STR /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annotate2.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,FROM,TO,T_STR /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/tL2FYX_V3n/annotate.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/tL2FYX_V3n/annotate.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/tL2FYX_V3n/annotate2.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ 2 sample(s) in common .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/tL2FYX_V3n/annotate2.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ 2 sample(s) in common .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/tL2FYX_V3n/annotate2.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/tL2FYX_V3n/annotate2.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /«PKGBUILDDIR»/test/annotate3.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /«PKGBUILDDIR»/test/annotate3.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -x FORMAT /«PKGBUILDDIR»/test/annotate3.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -x FORMAT /«PKGBUILDDIR»/test/annotate3.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annots4.vcf.gz -c +INFO /tmp/tL2FYX_V3n/annotate4.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annots4.vcf.gz -c +INFO /tmp/tL2FYX_V3n/annotate4.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/tL2FYX_V3n/annots4.tab.gz -h /«PKGBUILDDIR»/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /«PKGBUILDDIR»/test/annotate4.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/tL2FYX_V3n/annots4.tab.gz -h /«PKGBUILDDIR»/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /«PKGBUILDDIR»/test/annotate4.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat /tmp/tL2FYX_V3n/concat.1.a.vcf.gz /tmp/tL2FYX_V3n/concat.1.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob /tmp/tL2FYX_V3n/concat.1.a.vcf.gz /tmp/tL2FYX_V3n/concat.1.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat /tmp/tL2FYX_V3n/concat.1.a.bcf /tmp/tL2FYX_V3n/concat.1.b.bcf | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob /tmp/tL2FYX_V3n/concat.1.a.bcf /tmp/tL2FYX_V3n/concat.1.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -a /tmp/tL2FYX_V3n/concat.2.a.vcf.gz /tmp/tL2FYX_V3n/concat.2.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -a /tmp/tL2FYX_V3n/concat.2.a.vcf.gz /tmp/tL2FYX_V3n/concat.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -a /tmp/tL2FYX_V3n/concat.2.a.bcf /tmp/tL2FYX_V3n/concat.2.b.bcf | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.2.bcf.out /«PKGBUILDDIR»/test/concat.2.bcf.out.new .. failed ... test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -a /tmp/tL2FYX_V3n/concat.2.a.bcf /tmp/tL2FYX_V3n/concat.2.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.2.bcf.out /«PKGBUILDDIR»/test/concat.2.bcf.out.new .. failed ... test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -aD /tmp/tL2FYX_V3n/concat.2.a.vcf.gz /tmp/tL2FYX_V3n/concat.2.b.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -aD /tmp/tL2FYX_V3n/concat.2.a.vcf.gz /tmp/tL2FYX_V3n/concat.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -aD /tmp/tL2FYX_V3n/concat.2.a.bcf /tmp/tL2FYX_V3n/concat.2.b.bcf | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.4.bcf.out /«PKGBUILDDIR»/test/concat.4.bcf.out.new .. failed ... test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -aD /tmp/tL2FYX_V3n/concat.2.a.bcf /tmp/tL2FYX_V3n/concat.2.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.4.bcf.out /«PKGBUILDDIR»/test/concat.4.bcf.out.new .. failed ... test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -l /tmp/tL2FYX_V3n/concat.3.a.vcf.gz /tmp/tL2FYX_V3n/concat.3.b.vcf.gz /tmp/tL2FYX_V3n/concat.3.0.vcf.gz /tmp/tL2FYX_V3n/concat.3.c.vcf.gz /tmp/tL2FYX_V3n/concat.3.d.vcf.gz /tmp/tL2FYX_V3n/concat.3.e.vcf.gz /tmp/tL2FYX_V3n/concat.3.f.vcf.gz | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -l /tmp/tL2FYX_V3n/concat.3.a.vcf.gz /tmp/tL2FYX_V3n/concat.3.b.vcf.gz /tmp/tL2FYX_V3n/concat.3.0.vcf.gz /tmp/tL2FYX_V3n/concat.3.c.vcf.gz /tmp/tL2FYX_V3n/concat.3.d.vcf.gz /tmp/tL2FYX_V3n/concat.3.e.vcf.gz /tmp/tL2FYX_V3n/concat.3.f.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -l /tmp/tL2FYX_V3n/concat.3.a.bcf /tmp/tL2FYX_V3n/concat.3.b.bcf /tmp/tL2FYX_V3n/concat.3.0.bcf /tmp/tL2FYX_V3n/concat.3.c.bcf /tmp/tL2FYX_V3n/concat.3.d.bcf /tmp/tL2FYX_V3n/concat.3.e.bcf /tmp/tL2FYX_V3n/concat.3.f.bcf | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.3.bcf.out /«PKGBUILDDIR»/test/concat.3.bcf.out.new .. failed ... test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -l /tmp/tL2FYX_V3n/concat.3.a.bcf /tmp/tL2FYX_V3n/concat.3.b.bcf /tmp/tL2FYX_V3n/concat.3.0.bcf /tmp/tL2FYX_V3n/concat.3.c.bcf /tmp/tL2FYX_V3n/concat.3.d.bcf /tmp/tL2FYX_V3n/concat.3.e.bcf /tmp/tL2FYX_V3n/concat.3.f.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/concat.3.bcf.out /«PKGBUILDDIR»/test/concat.3.bcf.out.new .. failed ... test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: cat /tmp/tL2FYX_V3n/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/tL2FYX_V3n/rename.map -Ov /tmp/tL2FYX_V3n/annotate.bcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/tL2FYX_V3n/rename.map -Ob /tmp/tL2FYX_V3n/annotate.bcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/tL2FYX_V3n/rename.map -Ov /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/tL2FYX_V3n/rename.map -Ob /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. /tmp/tL2FYX_V3n/convert.vcf.gz Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0/0 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0/0 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- /tmp/tL2FYX_V3n/convert.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --tag PL /tmp/tL2FYX_V3n/convert.vcf.gz Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0/0 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --tag PL Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0/0 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --tag PL /tmp/tL2FYX_V3n/convert.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --tag PL Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --vcf-ids /tmp/tL2FYX_V3n/check.vcf.gz Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --vcf-ids Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --vcf-ids /tmp/tL2FYX_V3n/check.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --vcf-ids Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --chrom /tmp/tL2FYX_V3n/check.vcf.gz Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --chrom Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --chrom /tmp/tL2FYX_V3n/check.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --chrom Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --chrom --vcf-ids /tmp/tL2FYX_V3n/check.vcf.gz Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --chrom --vcf-ids Gen file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 8 records skipped: 0/6/0/2 no-ALT/non-biallelic/filtered/duplicated .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --chrom --vcf-ids /tmp/tL2FYX_V3n/check.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --chrom --vcf-ids Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h -,.,. /tmp/tL2FYX_V3n/convert.vcf.gz Haps file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h -,.,. Haps file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h .,-,. /tmp/tL2FYX_V3n/convert.vcf.gz Legend file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h .,-,. Legend file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h .,.,- /tmp/tL2FYX_V3n/convert.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h .,.,- Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert --hapsample -,. /tmp/tL2FYX_V3n/convert.vcf.gz Haps file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert --hapsample -,. Haps file: - Warning: non-biallelic records are skipped. Consider splitting multi-allelic records into biallelic records using 'bcftools norm -m-'. 1 records skipped: 0/1/0 no-ALT/non-biallelic/filtered .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert --hapsample .,- /tmp/tL2FYX_V3n/convert.vcf.gz Sample file: - .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert --hapsample .,- Sample file: - .. ok test_vcf_convert_gvcf: /«PKGBUILDDIR»/bcftools convert --gvcf2vcf /tmp/tL2FYX_V3n/convert.gvcf.vcf.gz | grep -v ^##bcftools .. ok test_vcf_convert_gvcf: /«PKGBUILDDIR»/bcftools view -Ob /tmp/tL2FYX_V3n/convert.gvcf.vcf.gz | /«PKGBUILDDIR»/bcftools convert --gvcf2vcf | grep -v ^##bcftools .. ok test_vcf_convert_tsv2vcf: /«PKGBUILDDIR»/bcftools convert -c ID,CHROM,POS,AA -s SAMPLE1 -f /«PKGBUILDDIR»/test/23andme.fa --tsv2vcf /«PKGBUILDDIR»/test/convert.23andme | grep -v ^##bcftools_ Rows total: 27 Rows skipped: 0 Missing GTs: 1 Hom RR: 14 Het RA: 7 Hom AA: 5 Het AA: 0 .. ok test_vcf_convert_tsv2vcf: /«PKGBUILDDIR»/bcftools convert -Ou -c ID,CHROM,POS,AA -s SAMPLE1 -f /«PKGBUILDDIR»/test/23andme.fa --tsv2vcf /«PKGBUILDDIR»/test/convert.23andme | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ Rows total: 27 Rows skipped: 0 Missing GTs: 1 Hom RR: 14 Het RA: 7 Hom AA: 5 Het AA: 0 .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -m /«PKGBUILDDIR»/test/consensus.tab About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa Non-zero status 1 .. failed ... test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/tL2FYX_V3n/consensus.1.chain.new > /dev/null; cat /tmp/tL2FYX_V3n/consensus.1.chain.new About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa cat: /tmp/tL2FYX_V3n/consensus.1.chain.new: No such file or directory Non-zero status 1 .. failed ... test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -m /«PKGBUILDDIR»/test/consensus.tab About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa Non-zero status 1 .. failed ... test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/tL2FYX_V3n/consensus.2.chain.new > /dev/null; cat /tmp/tL2FYX_V3n/consensus.2.chain.new About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa cat: /tmp/tL2FYX_V3n/consensus.2.chain.new: No such file or directory Non-zero status 1 .. failed ... test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -i -m /«PKGBUILDDIR»/test/consensus.tab About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa Non-zero status 1 .. failed ... test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -i -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/tL2FYX_V3n/consensus.3.chain.new > /dev/null; cat /tmp/tL2FYX_V3n/consensus.3.chain.new About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa cat: /tmp/tL2FYX_V3n/consensus.3.chain.new: No such file or directory Non-zero status 1 .. failed ... test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa Non-zero status 1 .. failed ... test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/tL2FYX_V3n/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -c /tmp/tL2FYX_V3n/consensus.4.chain.new > /dev/null; cat /tmp/tL2FYX_V3n/consensus.4.chain.new About: Create consensus sequence by applying VCF variants to a reference fasta file. Usage: bcftools consensus [OPTIONS] Options: -f, --fasta-ref reference sequence in fasta format -H, --haplotype <1|2> apply variants for the given haplotype -i, --iupac-codes output variants in the form of IUPAC ambiguity codes -m, --mask replace regions with N -o, --output write output to a file [standard output] -c, --chain write a chain file for liftover -s, --sample apply variants of the given sample Examples: # Get the consensus for one region. The fasta header lines are then expected # in the form ">chr:from-to". samtools faidx ref.fa 8:11870-11890 | bcftools consensus in.vcf.gz > out.fa cat: /tmp/tL2FYX_V3n/consensus.4.chain.new: No such file or directory Non-zero status 1 .. failed ... Number of tests: total .. 316 passed .. 293 failed .. 23 Makefile:93: recipe for target 'test' failed make[1]: *** [test] Error 1 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test: make -j8 test returned exit code 2 debian/rules:15: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160416-0318 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: powerpc Build-Space: 8608 Build-Time: 10 Distribution: xenial Fail-Stage: build Host Architecture: powerpc Install-Time: 37 Job: bcftools_1.2-2.dsc Machine Architecture: powerpc Package: bcftools Package-Time: 48 Source-Version: 1.2-2 Space: 8608 Status: attempted Version: 1.2-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160416-0318 Build needed 00:00:48, 8608k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9431742'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9431742/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9431742'] Unmounting chroot for build PACKAGEBUILD-9431742... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9431742'] Removing build PACKAGEBUILD-9431742