RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-39 3.13.0-91-generic #138-Ubuntu SMP Fri Jun 24 17:00:34 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.24. Syncing the system clock with the buildd NTP service... 1 Jul 02:51:54 ntpdate[1674]: adjust time server 10.211.37.1 offset -0.001986 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9931290', '/home/buildd/filecache-default/e4c0063eff90e17a3bbe5bc75217617f6b0962e3'] Unpacking chroot for build PACKAGEBUILD-9931290 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9931290'] Mounting chroot for build PACKAGEBUILD-9931290 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9931290', 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial main', 'deb http://ftpmaster.internal/ubuntu xenial main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu xenial-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu xenial-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-9931290 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9931290', 'amd64'] Updating debian chroot for build PACKAGEBUILD-9931290 Hit:1 http://ftpmaster.internal/ubuntu xenial InRelease Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial InRelease [17.5 kB] Get:3 http://ftpmaster.internal/ubuntu xenial-security InRelease [94.5 kB] Get:4 http://ftpmaster.internal/ubuntu xenial-updates InRelease [94.5 kB] Ign:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial InRelease Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 Packages [33.6 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main Translation-en [13.1 kB] Get:7 http://ftpmaster.internal/ubuntu xenial-security/main amd64 Packages [114 kB] Get:8 http://ftpmaster.internal/ubuntu xenial-security/main Translation-en [43.7 kB] Get:9 http://ftpmaster.internal/ubuntu xenial-security/restricted amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu xenial-security/restricted Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu xenial-security/universe amd64 Packages [29.6 kB] Get:12 http://ftpmaster.internal/ubuntu xenial-security/universe Translation-en [18.2 kB] Get:13 http://ftpmaster.internal/ubuntu xenial-security/multiverse amd64 Packages [1176 B] Get:14 http://ftpmaster.internal/ubuntu xenial-security/multiverse Translation-en [628 B] Get:15 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 Packages [240 kB] Get:16 http://ftpmaster.internal/ubuntu xenial-updates/main Translation-en [94.3 kB] Get:17 http://ftpmaster.internal/ubuntu xenial-updates/restricted amd64 Packages [64 B] Get:18 http://ftpmaster.internal/ubuntu xenial-updates/restricted Translation-en [64 B] Get:19 http://ftpmaster.internal/ubuntu xenial-updates/universe amd64 Packages [128 kB] Get:20 http://ftpmaster.internal/ubuntu xenial-updates/universe Translation-en [63.7 kB] Get:21 http://ftpmaster.internal/ubuntu xenial-updates/multiverse amd64 Packages [1176 B] Get:22 http://ftpmaster.internal/ubuntu xenial-updates/multiverse Translation-en [628 B] Fetched 989 kB in 0s (1267 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 1E9377A2BA9EF27F W: The repository 'http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial InRelease' is not signed. W: There is no public key available for the following key IDs: 1E9377A2BA9EF27F Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-transport-https base-files binutils bsdutils cpp-5 dpkg dpkg-dev g++-5 gcc-5 gcc-5-base grep init init-system-helpers libapt-pkg5.0 libasan2 libatomic1 libblkid1 libcc1-0 libcilkrts5 libdpkg-perl libfdisk1 libgcc-5-dev libgnutls30 libgomp1 libitm1 libldap-2.4-2 liblsan0 libmount1 libmpx0 libquadmath0 libsmartcols1 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev mount openssl systemd systemd-sysv util-linux 47 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 91.8 MB of archives. After this operation, 241 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libcc1-0 binutils libgomp1 libitm1 libatomic1 libasan2 liblsan0 libtsan0 libubsan0 libcilkrts5 libmpx0 libquadmath0 g++-5 libstdc++-5-dev gcc-5 libgcc-5-dev cpp-5 gcc-5-base libstdc++6 Authentication warning overridden. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libcc1-0 amd64 5.4.0-5ubuntu1~16.04 [38.8 kB] Get:2 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 base-files amd64 9.4ubuntu4.1 [68.4 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04 [2308 kB] Get:4 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 bsdutils amd64 1:2.27.1-6ubuntu3.1 [51.8 kB] Get:5 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 dpkg amd64 1.18.4ubuntu1.1 [2083 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libgomp1 amd64 5.4.0-5ubuntu1~16.04 [55.0 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libitm1 amd64 5.4.0-5ubuntu1~16.04 [27.4 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libatomic1 amd64 5.4.0-5ubuntu1~16.04 [8904 B] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libasan2 amd64 5.4.0-5ubuntu1~16.04 [264 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 liblsan0 amd64 5.4.0-5ubuntu1~16.04 [105 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libtsan0 amd64 5.4.0-5ubuntu1~16.04 [244 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libubsan0 amd64 5.4.0-5ubuntu1~16.04 [95.4 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libcilkrts5 amd64 5.4.0-5ubuntu1~16.04 [40.1 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libmpx0 amd64 5.4.0-5ubuntu1~16.04 [9766 B] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libquadmath0 amd64 5.4.0-5ubuntu1~16.04 [131 kB] Get:16 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 g++-5 amd64 5.4.0-5ubuntu1~16.04 [32.3 MB] Get:17 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 grep amd64 2.25-1~16.04.1 [153 kB] Get:18 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 init-system-helpers all 1.29ubuntu2 [32.2 kB] Get:19 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 init amd64 1.29ubuntu2 [4520 B] Get:20 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 util-linux amd64 2.27.1-6ubuntu3.1 [848 kB] Get:21 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 mount amd64 2.27.1-6ubuntu3.1 [121 kB] Get:22 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libapt-pkg5.0 amd64 1.2.12~ubuntu16.04.1 [696 kB] Get:23 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 apt amd64 1.2.12~ubuntu16.04.1 [1038 kB] Get:24 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libuuid1 amd64 2.27.1-6ubuntu3.1 [15.6 kB] Get:25 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libblkid1 amd64 2.27.1-6ubuntu3.1 [107 kB] Get:26 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libmount1 amd64 2.27.1-6ubuntu3.1 [114 kB] Get:27 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libsystemd0 amd64 229-4ubuntu6 [208 kB] Get:28 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 systemd amd64 229-4ubuntu6 [3642 kB] Get:29 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 systemd-sysv amd64 229-4ubuntu6 [15.2 kB] Get:30 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libfdisk1 amd64 2.27.1-6ubuntu3.1 [138 kB] Get:31 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libsmartcols1 amd64 2.27.1-6ubuntu3.1 [63.3 kB] Get:32 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libudev1 amd64 229-4ubuntu6 [57.9 kB] Get:33 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.1 [43.2 kB] Get:34 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.1 [547 kB] Get:35 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.1 [1122 kB] Get:36 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 apt-transport-https amd64 1.2.12~ubuntu16.04.1 [25.7 kB] Get:37 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.1 [161 kB] Get:38 http://ftpmaster.internal/ubuntu xenial-security/main amd64 openssl amd64 1.0.2g-1ubuntu4.1 [491 kB] Get:39 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.1 [584 kB] Get:40 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.1 [195 kB] Get:41 http://ftpmaster.internal/ubuntu xenial-security/main amd64 linux-libc-dev amd64 4.4.0-28.47 [842 kB] Get:42 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libstdc++-5-dev amd64 5.4.0-5ubuntu1~16.04 [1430 kB] Get:43 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 gcc-5 amd64 5.4.0-5ubuntu1~16.04 [8559 kB] Get:44 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libgcc-5-dev amd64 5.4.0-5ubuntu1~16.04 [2231 kB] Get:45 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 cpp-5 amd64 5.4.0-5ubuntu1~16.04 [30.0 MB] Get:46 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 gcc-5-base amd64 5.4.0-5ubuntu1~16.04 [16.6 kB] Get:47 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libstdc++6 amd64 5.4.0-5ubuntu1~16.04 [394 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 91.8 MB in 9s (9920 kB/s) (Reading database ... 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Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.1) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../apt-transport-https_1.2.12~ubuntu16.04.1_amd64.deb ... Unpacking apt-transport-https (1.2.12~ubuntu16.04.1) over (1.2.10ubuntu1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu3.1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.1) over (2.4.42+dfsg-2ubuntu3) ... Preparing to unpack .../openssl_1.0.2g-1ubuntu4.1_amd64.deb ... Unpacking openssl (1.0.2g-1ubuntu4.1) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu1.1_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu1.1) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu1.1_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu1.1) over (1.18.4ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.4.0-28.47_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.4.0-28.47) over (4.4.0-21.37) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcc1-0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up binutils (2.26.1-1ubuntu1~16.04) ... Setting up libgomp1:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libitm1:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libatomic1:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libasan2:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up liblsan0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libtsan0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libubsan0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libcilkrts5:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libmpx0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libquadmath0:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up cpp-5 (5.4.0-5ubuntu1~16.04) ... Setting up libgcc-5-dev:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up gcc-5 (5.4.0-5ubuntu1~16.04) ... Setting up libstdc++-5-dev:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up g++-5 (5.4.0-5ubuntu1~16.04) ... Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.1) ... Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.1) ... Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.1) ... Setting up apt-transport-https (1.2.12~ubuntu16.04.1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.1) ... Setting up openssl (1.0.2g-1ubuntu4.1) ... Setting up libdpkg-perl (1.18.4ubuntu1.1) ... Setting up dpkg-dev (1.18.4ubuntu1.1) ... Setting up linux-libc-dev:amd64 (4.4.0-28.47) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9931290', 'amd64', 'xenial', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial', '--purge=never', '--nolog', '-A', 'elmerfem_6.1.0.svn.5396.dfsg2-4ubuntu4.dsc'] Initiating build PACKAGEBUILD-9931290 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-91-generic #138-Ubuntu SMP Fri Jun 24 17:00:34 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-39.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ elmerfem 6.1.0.svn.5396.dfsg2-4ubuntu4 (amd64) 01 Jul 2016 02:52 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: elmerfem Version: 6.1.0.svn.5396.dfsg2-4ubuntu4 Source Version: 6.1.0.svn.5396.dfsg2-4ubuntu4 Distribution: xenial Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/elmerfem-jLdDe4/elmerfem-6.1.0.svn.5396.dfsg2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/elmerfem-jLdDe4' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9931290/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── elmerfem_6.1.0.svn.5396.dfsg2-4ubuntu4.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-6SaVn5/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ Packages [525 B] Fetched 2852 B in 0s (248 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-6SaVn5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas.so, liblapack-dev | liblapack-3.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libparpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.5-dev, tcl8.5-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, libscotchmetis-dev, r-base-core, libpng-dev, dh-autoreconf, autotools-dev Merged Build-Conflicts: gcc-multilib, libatlas-base-dev, libatlas3-base, matlab-support Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 5), quilt, po-debconf, autoconf, automake, gfortran, libblas-dev | libblas.so, liblapack-dev | liblapack-3.so, mpi-default-dev, mpi-default-bin, libhypre-dev, libsuitesparse-dev, libarpack2-dev, libparpack2-dev, libmumps-scotch-dev, libreadline-dev, libncurses5-dev, libx11-dev, tk8.5-dev, tcl8.5-dev, libfreetype6-dev, libftgl-dev, libgl1-mesa-dev | libgl-dev, libglu1-mesa-dev | libglu-dev, libscotchmetis-dev, r-base-core, libpng-dev, dh-autoreconf, autotools-dev Filtered Build-Conflicts: gcc-multilib, libatlas-base-dev, libatlas3-base, matlab-support dpkg-deb: building package 'sbuild-build-depends-elmerfem-dummy' in '/«BUILDDIR»/resolver-moCD6Q/apt_archive/sbuild-build-depends-elmerfem-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ Sources [630 B] Get:5 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ Packages [901 B] Fetched 3650 B in 0s (278 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install elmerfem build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diffstat file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool-debian libamd2.4.1 libarchive-zip-perl libarpack2 libarpack2-dev libasprintf0v5 libblacs-mpi-dev libblacs-openmpi1 libblas-common libblas-dev libblas3 libbsd0 libbtf1.2.1 libcairo2 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6 libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcurl3 libcxsparse3.1.4 libdatrie1 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgfortran-5-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libharfbuzz0b libhwloc-dev libhwloc5 libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice6 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libklu1.3.3 liblapack-dev liblapack3 libldl2.2.1 libllvm3.8 libltdl-dev libltdl7 libmagic1 libmumps-4.10.0 libmumps-dev libmumps-scotch-4.10.0 libmumps-scotch-dev libncurses5-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.10 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparpack2 libparpack2-dev libpciaccess0 libpipeline1 libpixman-1-0 libpng12-dev libpthread-stubs0-dev libreadline-dev libreadline6-dev libscalapack-mpi-dev libscalapack-openmpi1 libscotch-5.1 libscotch-dev libscotchmetis-dev libsigsegv2 libsm6 libspqr2.0.2 libsuitesparse-dev libsuitesparseconfig4.4.6 libsuperlu-dev libsuperlu4 libtcl8.5 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtk8.6 libtool libumfpack5.7.1 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxml2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mpi-default-bin mpi-default-dev openmpi-bin openmpi-common pkg-config po-debconf quilt r-base-core tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev ucf unzip x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc libhwloc-contrib-plugins libtool-doc ncurses-doc opennmpi-doc pciutils readline-doc scalapack-doc libsuperlu-doc tcl8.6 tk8.6 gcj-jdk libxcb-doc libxext-doc less www-browser openmpi-checkpoint libmail-box-perl procmail graphviz default-mta | mail-transport-agent ess r-doc-info | r-doc-pdf r-mathlib r-base-html tcl-tclreadline tcl8.5-doc tk8.5-doc gvfs-bin Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libtxc-dxtn-s2tc0 | libtxc-dxtn0 libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins libx11-doc xml-core libmail-sendmail-perl less r-recommended r-base-dev r-doc-html xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diffstat file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool-debian libamd2.4.1 libarchive-zip-perl libarpack2 libarpack2-dev libasprintf0v5 libblacs-mpi-dev libblacs-openmpi1 libblas-common libblas-dev libblas3 libbsd0 libbtf1.2.1 libcairo2 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6 libcolamd2.9.1 libcroco3 libcsparse3.1.4 libcurl3 libcxsparse3.1.4 libdatrie1 libdrm-amdgpu1 libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libftgl-dev libftgl2 libgfortran-5-dev libgfortran3 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libharfbuzz0b libhwloc-dev libhwloc5 libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice6 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libklu1.3.3 liblapack-dev liblapack3 libldl2.2.1 libllvm3.8 libltdl-dev libltdl7 libmagic1 libmumps-4.10.0 libmumps-dev libmumps-scotch-4.10.0 libmumps-scotch-dev libncurses5-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.10 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparpack2 libparpack2-dev libpciaccess0 libpipeline1 libpixman-1-0 libpng12-dev libpthread-stubs0-dev libreadline-dev libreadline6-dev libscalapack-mpi-dev libscalapack-openmpi1 libscotch-5.1 libscotch-dev libscotchmetis-dev libsigsegv2 libsm6 libspqr2.0.2 libsuitesparse-dev libsuitesparseconfig4.4.6 libsuperlu-dev libsuperlu4 libtcl8.5 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtk8.6 libtool libumfpack5.7.1 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxml2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxss-dev libxss1 libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mpi-default-bin mpi-default-dev openmpi-bin openmpi-common pkg-config po-debconf quilt r-base-core sbuild-build-depends-elmerfem-dummy tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev ucf unzip x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After this operation, 576 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgfortran3 libgfortran-5-dev gfortran-5 sbuild-build-depends-elmerfem-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-moCD6Q/apt_archive ./ sbuild-build-depends-elmerfem-dummy 0.invalid.0 [1148 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libgfortran3 amd64 5.4.0-5ubuntu1~16.04 [259 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 libgfortran-5-dev amd64 5.4.0-5ubuntu1~16.04 [291 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu xenial/main amd64 gfortran-5 amd64 5.4.0-5ubuntu1~16.04 [31.0 MB] Get:10 http://ftpmaster.internal/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main amd64 fontconfig-config all 2.11.94-0ubuntu1 [49.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.2 [71.3 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2 [316 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1 [131 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main amd64 fontconfig amd64 2.11.94-0ubuntu1 [178 kB] Get:22 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm2 amd64 2.4.67-1ubuntu0.16.04.1 [28.1 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main amd64 libglapi-mesa amd64 11.2.0-1ubuntu2 [22.8 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main amd64 libx11-xcb1 amd64 2:1.6.3-1ubuntu2 [8956 B] Get:25 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-dri2-0 amd64 1.11.1-1ubuntu1 [6882 B] Get:26 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-dri3-0 amd64 1.11.1-1ubuntu1 [5218 B] Get:27 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-glx0 amd64 1.11.1-1ubuntu1 [20.9 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-present0 amd64 1.11.1-1ubuntu1 [5218 B] Get:29 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-sync1 amd64 1.11.1-1ubuntu1 [8324 B] Get:30 http://ftpmaster.internal/ubuntu xenial/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B] Get:31 http://ftpmaster.internal/ubuntu xenial/main amd64 libxfixes3 amd64 1:5.0.1-2 [11.1 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main amd64 libxshmfence1 amd64 1.2-1 [5042 B] Get:33 http://ftpmaster.internal/ubuntu xenial/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] Get:34 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm-amdgpu1 amd64 2.4.67-1ubuntu0.16.04.1 [16.4 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main amd64 libpciaccess0 amd64 0.13.4-1 [18.1 kB] Get:36 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm-intel1 amd64 2.4.67-1ubuntu0.16.04.1 [56.0 kB] Get:37 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm-nouveau2 amd64 2.4.67-1ubuntu0.16.04.1 [16.3 kB] Get:38 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm-radeon1 amd64 2.4.67-1ubuntu0.16.04.1 [21.5 kB] Get:39 http://ftpmaster.internal/ubuntu xenial/main amd64 libelf1 amd64 0.165-3ubuntu1 [42.5 kB] Get:40 http://ftpmaster.internal/ubuntu xenial/main amd64 libbsd0 amd64 0.8.2-1 [41.7 kB] Get:41 http://ftpmaster.internal/ubuntu xenial/main amd64 libedit2 amd64 3.1-20150325-1ubuntu2 [76.5 kB] Get:42 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libllvm3.8 amd64 1:3.8-2ubuntu3 [10.3 MB] Get:43 http://ftpmaster.internal/ubuntu xenial/main amd64 libgl1-mesa-dri amd64 11.2.0-1ubuntu2 [4655 kB] Get:44 http://ftpmaster.internal/ubuntu xenial/main amd64 libgl1-mesa-glx amd64 11.2.0-1ubuntu2 [127 kB] Get:45 http://ftpmaster.internal/ubuntu xenial/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:46 http://ftpmaster.internal/ubuntu xenial/universe amd64 libftgl2 amd64 2.1.3~rc5-4+nmu1 [49.8 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] Get:49 http://ftpmaster.internal/ubuntu xenial/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3 [111 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] Get:51 http://ftpmaster.internal/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:52 http://ftpmaster.internal/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] Get:53 http://ftpmaster.internal/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] Get:54 http://ftpmaster.internal/ubuntu xenial/universe amd64 libsuperlu4 amd64 4.3+dfsg-3 [158 kB] Get:55 http://ftpmaster.internal/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:56 http://ftpmaster.internal/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] Get:57 http://ftpmaster.internal/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:58 http://ftpmaster.internal/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] Get:59 http://ftpmaster.internal/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] Get:60 http://ftpmaster.internal/ubuntu xenial/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:61 http://ftpmaster.internal/ubuntu xenial/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:62 http://ftpmaster.internal/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:63 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:64 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.1-1~ubuntu16.04.1 [1118 kB] Get:65 http://ftpmaster.internal/ubuntu xenial/main amd64 libicu55 amd64 55.1-7 [7643 kB] Get:66 http://ftpmaster.internal/ubuntu xenial/main amd64 libnuma1 amd64 2.0.11-1ubuntu1 [21.0 kB] Get:67 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.1 [696 kB] Get:68 http://ftpmaster.internal/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:69 http://ftpmaster.internal/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] Get:70 http://ftpmaster.internal/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] Get:71 http://ftpmaster.internal/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:72 http://ftpmaster.internal/ubuntu xenial/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:73 http://ftpmaster.internal/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:74 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:75 http://ftpmaster.internal/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:76 http://ftpmaster.internal/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] Get:77 http://ftpmaster.internal/ubuntu xenial/main amd64 libarchive-zip-perl all 1.56-2 [84.1 kB] Get:78 http://ftpmaster.internal/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:79 http://ftpmaster.internal/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:80 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] Get:81 http://ftpmaster.internal/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] Get:82 http://ftpmaster.internal/ubuntu xenial/main amd64 libtool all 2.4.6-0.1 [193 kB] Get:83 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-autoreconf all 11 [15.8 kB] Get:84 http://ftpmaster.internal/ubuntu xenial/main amd64 diffstat amd64 1.61-1 [23.6 kB] Get:85 http://ftpmaster.internal/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] Get:86 http://ftpmaster.internal/ubuntu xenial/main amd64 libsuitesparseconfig4.4.6 amd64 1:4.4.6-1 [9322 B] Get:87 http://ftpmaster.internal/ubuntu xenial/main amd64 libamd2.4.1 amd64 1:4.4.6-1 [21.3 kB] Get:88 http://ftpmaster.internal/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] Get:89 http://ftpmaster.internal/ubuntu xenial/universe amd64 libarpack2 amd64 3.3.0-1build2 [88.2 kB] Get:90 http://ftpmaster.internal/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] Get:91 http://ftpmaster.internal/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] Get:92 http://ftpmaster.internal/ubuntu xenial/universe amd64 libarpack2-dev amd64 3.3.0-1build2 [94.7 kB] Get:93 http://ftpmaster.internal/ubuntu xenial/main amd64 libbtf1.2.1 amd64 1:4.4.6-1 [10.8 kB] Get:94 http://ftpmaster.internal/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] Get:95 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:96 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:97 http://ftpmaster.internal/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] Get:98 http://ftpmaster.internal/ubuntu xenial/main amd64 libcamd2.4.1 amd64 1:4.4.6-1 [20.0 kB] Get:99 http://ftpmaster.internal/ubuntu xenial/main amd64 libccolamd2.9.1 amd64 1:4.4.6-1 [21.5 kB] Get:100 http://ftpmaster.internal/ubuntu xenial/main amd64 libcolamd2.9.1 amd64 1:4.4.6-1 [15.7 kB] Get:101 http://ftpmaster.internal/ubuntu xenial/main amd64 libcholmod3.0.6 amd64 1:4.4.6-1 [293 kB] Get:102 http://ftpmaster.internal/ubuntu xenial/main amd64 libcsparse3.1.4 amd64 1:4.4.6-1 [26.3 kB] Get:103 http://ftpmaster.internal/ubuntu xenial/main amd64 libcurl3 amd64 7.47.0-1ubuntu2 [185 kB] Get:104 http://ftpmaster.internal/ubuntu xenial/main amd64 libcxsparse3.1.4 amd64 1:4.4.6-1 [62.8 kB] Get:105 http://ftpmaster.internal/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] Get:106 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdrm-dev amd64 2.4.67-1ubuntu0.16.04.1 [208 kB] Get:107 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.2 [115 kB] Get:108 http://ftpmaster.internal/ubuntu xenial/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4 [168 kB] Get:109 http://ftpmaster.internal/ubuntu xenial/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1 [184 kB] Get:110 http://ftpmaster.internal/ubuntu xenial/main amd64 libfreetype6-dev amd64 2.6.1-0.1ubuntu2 [956 kB] Get:111 http://ftpmaster.internal/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] Get:112 http://ftpmaster.internal/ubuntu xenial/main amd64 libfontconfig1-dev amd64 2.11.94-0ubuntu1 [658 kB] Get:113 http://ftpmaster.internal/ubuntu xenial/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:114 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-core-dev all 7.0.28-2ubuntu1 [254 kB] Get:115 http://ftpmaster.internal/ubuntu xenial/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] Get:116 http://ftpmaster.internal/ubuntu xenial/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB] Get:117 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-input-dev all 2.3.1-1 [118 kB] Get:118 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB] Get:119 http://ftpmaster.internal/ubuntu xenial/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] Get:120 http://ftpmaster.internal/ubuntu xenial/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B] Get:121 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB] Get:122 http://ftpmaster.internal/ubuntu xenial/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu2 [642 kB] Get:123 http://ftpmaster.internal/ubuntu xenial/main amd64 mesa-common-dev amd64 11.2.0-1ubuntu2 [460 kB] Get:124 http://ftpmaster.internal/ubuntu xenial/main amd64 libx11-xcb-dev amd64 2:1.6.3-1ubuntu2 [9730 B] Get:125 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-dri3-dev amd64 1.11.1-1ubuntu1 [5752 B] Get:126 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-randr0 amd64 1.11.1-1ubuntu1 [14.4 kB] Get:127 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-render0-dev amd64 1.11.1-1ubuntu1 [15.3 kB] Get:128 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-randr0-dev amd64 1.11.1-1ubuntu1 [18.2 kB] Get:129 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-xfixes0 amd64 1.11.1-1ubuntu1 [8840 B] Get:130 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-shape0 amd64 1.11.1-1ubuntu1 [5756 B] Get:131 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-shape0-dev amd64 1.11.1-1ubuntu1 [6900 B] Get:132 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-xfixes0-dev amd64 1.11.1-1ubuntu1 [11.2 kB] Get:133 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-sync-dev amd64 1.11.1-1ubuntu1 [10.1 kB] Get:134 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-present-dev amd64 1.11.1-1ubuntu1 [6618 B] Get:135 http://ftpmaster.internal/ubuntu xenial/main amd64 libxshmfence-dev amd64 1.2-1 [3676 B] Get:136 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-dri2-0-dev amd64 1.11.1-1ubuntu1 [8384 B] Get:137 http://ftpmaster.internal/ubuntu xenial/main amd64 libxcb-glx0-dev amd64 1.11.1-1ubuntu1 [26.9 kB] Get:138 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] Get:139 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB] Get:140 http://ftpmaster.internal/ubuntu xenial/main amd64 libxfixes-dev amd64 1:5.0.1-2 [10.9 kB] Get:141 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-damage-dev all 1:1.2.1-2 [8286 B] Get:142 http://ftpmaster.internal/ubuntu xenial/main amd64 libxdamage-dev amd64 1:1.1.4-2 [5028 B] Get:143 http://ftpmaster.internal/ubuntu xenial/main amd64 libxext-dev amd64 2:1.3.3-1 [82.1 kB] Get:144 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6116 B] Get:145 http://ftpmaster.internal/ubuntu xenial/main amd64 libxxf86vm-dev amd64 1:1.1.4-1 [13.3 kB] Get:146 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-dri2-dev all 2.8-2 [12.6 kB] Get:147 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-gl-dev all 1.4.17-1 [17.9 kB] Get:148 http://ftpmaster.internal/ubuntu xenial/main amd64 libgl1-mesa-dev amd64 11.2.0-1ubuntu2 [4410 B] Get:149 http://ftpmaster.internal/ubuntu xenial/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB] Get:150 http://ftpmaster.internal/ubuntu xenial/universe amd64 libftgl-dev amd64 2.1.3~rc5-4+nmu1 [751 kB] Get:151 http://ftpmaster.internal/ubuntu xenial/main amd64 libgraphite2-3 amd64 1.3.6-1ubuntu1 [70.8 kB] Get:152 http://ftpmaster.internal/ubuntu xenial/main amd64 libharfbuzz0b amd64 1.0.1-1build2 [140 kB] Get:153 http://ftpmaster.internal/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:154 http://ftpmaster.internal/ubuntu xenial/main amd64 libklu1.3.3 amd64 1:4.4.6-1 [71.5 kB] Get:155 http://ftpmaster.internal/ubuntu xenial/main amd64 libldl2.2.1 amd64 1:4.4.6-1 [10.6 kB] Get:156 http://ftpmaster.internal/ubuntu xenial/main amd64 libltdl7 amd64 2.4.6-0.1 [38.3 kB] Get:157 http://ftpmaster.internal/ubuntu xenial/main amd64 libltdl-dev amd64 2.4.6-0.1 [162 kB] Get:158 http://ftpmaster.internal/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] Get:159 http://ftpmaster.internal/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] Get:160 http://ftpmaster.internal/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] Get:161 http://ftpmaster.internal/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] Get:162 http://ftpmaster.internal/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] Get:163 http://ftpmaster.internal/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] Get:164 http://ftpmaster.internal/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] Get:165 http://ftpmaster.internal/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] Get:166 http://ftpmaster.internal/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] Get:167 http://ftpmaster.internal/ubuntu xenial/universe amd64 libparpack2 amd64 3.3.0-1build2 [83.3 kB] Get:168 http://ftpmaster.internal/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] Get:169 http://ftpmaster.internal/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] Get:170 http://ftpmaster.internal/ubuntu xenial/main amd64 libspqr2.0.2 amd64 1:4.4.6-1 [63.6 kB] Get:171 http://ftpmaster.internal/ubuntu xenial/main amd64 libumfpack5.7.1 amd64 1:4.4.6-1 [223 kB] Get:172 http://ftpmaster.internal/ubuntu xenial/main amd64 libsuitesparse-dev amd64 1:4.4.6-1 [899 kB] Get:173 http://ftpmaster.internal/ubuntu xenial/universe amd64 libsuperlu-dev amd64 4.3+dfsg-3 [174 kB] Get:174 http://ftpmaster.internal/ubuntu xenial/universe amd64 libtcl8.5 amd64 8.5.19-1 [696 kB] Get:175 http://ftpmaster.internal/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] Get:176 http://ftpmaster.internal/ubuntu xenial/main amd64 libtiff5 amd64 4.0.6-1 [144 kB] Get:177 http://ftpmaster.internal/ubuntu xenial/universe amd64 libtk8.5 amd64 8.5.19-1ubuntu1 [655 kB] Get:178 http://ftpmaster.internal/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] Get:179 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:180 http://ftpmaster.internal/ubuntu xenial/main amd64 libxrender-dev amd64 1:0.9.9-0ubuntu1 [24.5 kB] Get:181 http://ftpmaster.internal/ubuntu xenial/main amd64 libxft-dev amd64 2.3.2-1 [45.7 kB] Get:182 http://ftpmaster.internal/ubuntu xenial/main amd64 x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:183 http://ftpmaster.internal/ubuntu xenial/main amd64 libxss-dev amd64 1:1.2.2-1 [12.7 kB] Get:184 http://ftpmaster.internal/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] Get:185 http://ftpmaster.internal/ubuntu xenial/universe amd64 libhwloc5 amd64 1.11.2-3 [99.5 kB] Get:186 http://ftpmaster.internal/ubuntu xenial/main amd64 libibverbs1 amd64 1.1.8-1.1ubuntu2 [25.0 kB] Get:187 http://ftpmaster.internal/ubuntu xenial/universe amd64 libopenmpi1.10 amd64 1.10.2-8ubuntu1 [2025 kB] Get:188 http://ftpmaster.internal/ubuntu xenial/universe amd64 openmpi-common all 1.10.2-8ubuntu1 [129 kB] Get:189 http://ftpmaster.internal/ubuntu xenial/universe amd64 openmpi-bin amd64 1.10.2-8ubuntu1 [100 kB] Get:190 http://ftpmaster.internal/ubuntu xenial/universe amd64 quilt all 0.63-3 [272 kB] Get:191 http://ftpmaster.internal/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] Get:192 http://ftpmaster.internal/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] Get:193 http://ftpmaster.internal/ubuntu xenial/main amd64 xdg-utils all 1.1.1-1ubuntu1 [59.9 kB] Get:194 http://ftpmaster.internal/ubuntu xenial/universe amd64 r-base-core amd64 3.2.3-4 [20.4 MB] Get:195 http://ftpmaster.internal/ubuntu xenial/universe amd64 tcl8.5 amd64 8.5.19-1 [14.0 kB] Get:196 http://ftpmaster.internal/ubuntu xenial/universe amd64 tcl8.5-dev amd64 8.5.19-1 [672 kB] Get:197 http://ftpmaster.internal/ubuntu xenial/universe amd64 tk8.5 amd64 8.5.19-1ubuntu1 [12.1 kB] Get:198 http://ftpmaster.internal/ubuntu xenial/universe amd64 tk8.5-dev amd64 8.5.19-1ubuntu1 [662 kB] Get:199 http://ftpmaster.internal/ubuntu xenial/universe amd64 mpi-default-bin amd64 1.4 [3370 B] Get:200 http://ftpmaster.internal/ubuntu xenial/universe amd64 libblacs-openmpi1 amd64 1.1-33.3 [55.0 kB] Get:201 http://ftpmaster.internal/ubuntu xenial/main amd64 libibverbs-dev amd64 1.1.8-1.1ubuntu2 [77.6 kB] Get:202 http://ftpmaster.internal/ubuntu xenial/main amd64 libnuma-dev amd64 2.0.11-1ubuntu1 [31.7 kB] Get:203 http://ftpmaster.internal/ubuntu xenial/universe amd64 libhwloc-dev amd64 1.11.2-3 [155 kB] Get:204 http://ftpmaster.internal/ubuntu xenial/universe amd64 libopenmpi-dev amd64 1.10.2-8ubuntu1 [537 kB] Get:205 http://ftpmaster.internal/ubuntu xenial/universe amd64 mpi-default-dev amd64 1.4 [4154 B] Get:206 http://ftpmaster.internal/ubuntu xenial/universe amd64 libblacs-mpi-dev amd64 1.1-33.3 [48.8 kB] Get:207 http://ftpmaster.internal/ubuntu xenial/universe amd64 libhypre-2.8.0b amd64 2.8.0b-3 [1375 kB] Get:208 http://ftpmaster.internal/ubuntu xenial/universe amd64 libhypre-dev all 2.8.0b-3 [121 kB] Get:209 http://ftpmaster.internal/ubuntu xenial/universe amd64 libscalapack-openmpi1 amd64 1.8.0-12.3 [2242 kB] Get:210 http://ftpmaster.internal/ubuntu xenial/universe amd64 libmumps-4.10.0 amd64 4.10.0.dfsg-4 [880 kB] Get:211 http://ftpmaster.internal/ubuntu xenial/universe amd64 libscalapack-mpi-dev amd64 1.8.0-12.3 [2167 kB] Get:212 http://ftpmaster.internal/ubuntu xenial/universe amd64 libmumps-dev amd64 4.10.0.dfsg-4 [801 kB] Get:213 http://ftpmaster.internal/ubuntu xenial/universe amd64 libscotch-5.1 amd64 5.1.12b.dfsg-2build4 [301 kB] Get:214 http://ftpmaster.internal/ubuntu xenial/universe amd64 libmumps-scotch-4.10.0 amd64 4.10.0.dfsg-4 [893 kB] Get:215 http://ftpmaster.internal/ubuntu xenial/universe amd64 libmumps-scotch-dev amd64 4.10.0.dfsg-4 [801 kB] Get:216 http://ftpmaster.internal/ubuntu xenial/universe amd64 libparpack2-dev amd64 3.3.0-1build2 [90.5 kB] Get:217 http://ftpmaster.internal/ubuntu xenial/universe amd64 libscotch-dev amd64 5.1.12b.dfsg-2build4 [1181 kB] Get:218 http://ftpmaster.internal/ubuntu xenial/universe amd64 libscotchmetis-dev amd64 5.1.12b.dfsg-2build4 [9670 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 121 MB in 16s (7149 kB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... Unpacking libx11-data (2:1.6.3-1ubuntu2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-7_amd64.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ... Unpacking fonts-dejavu-core (2.35-1) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.94-0ubuntu1_all.deb ... Unpacking fontconfig-config (2.11.94-0ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.2_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.6.1-0.1ubuntu2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.1-0.1ubuntu2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.94-0ubuntu1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.94-0ubuntu1_amd64.deb ... Unpacking fontconfig (2.11.94-0ubuntu1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.67-1ubuntu0.16.04.1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.67-1ubuntu0.16.04.1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../libglapi-mesa_11.2.0-1ubuntu2_amd64.deb ... Unpacking libglapi-mesa:amd64 (11.2.0-1ubuntu2) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../libx11-xcb1_2%3a1.6.3-1ubuntu2_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.3-1ubuntu2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../libxcb-dri2-0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../libxcb-dri3-0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../libxcb-glx0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../libxcb-present0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../libxcb-sync1_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../libxdamage1_1%3a1.1.4-2_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../libxfixes3_1%3a5.0.1-2_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.1-2) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../libxshmfence1_1.2-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.2-1) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../libxxf86vm1_1%3a1.1.4-1_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../libdrm-amdgpu1_2.4.67-1ubuntu0.16.04.1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.67-1ubuntu0.16.04.1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../libpciaccess0_0.13.4-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../libdrm-intel1_2.4.67-1ubuntu0.16.04.1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.67-1ubuntu0.16.04.1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../libdrm-nouveau2_2.4.67-1ubuntu0.16.04.1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.67-1ubuntu0.16.04.1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../libdrm-radeon1_2.4.67-1ubuntu0.16.04.1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.67-1ubuntu0.16.04.1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../libelf1_0.165-3ubuntu1_amd64.deb ... Unpacking libelf1:amd64 (0.165-3ubuntu1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.8.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.2-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20150325-1ubuntu2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1ubuntu2) ... Selecting previously unselected package libllvm3.8:amd64. Preparing to unpack .../libllvm3.8_1%3a3.8-2ubuntu3_amd64.deb ... Unpacking libllvm3.8:amd64 (1:3.8-2ubuntu3) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../libgl1-mesa-dri_11.2.0-1ubuntu2_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (11.2.0-1ubuntu2) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Preparing to unpack .../libgl1-mesa-glx_11.2.0-1ubuntu2_amd64.deb ... Unpacking libgl1-mesa-glx:amd64 (11.2.0-1ubuntu2) ... Selecting previously unselected package libglu1-mesa:amd64. Preparing to unpack .../libglu1-mesa_9.0.0-2.1_amd64.deb ... Unpacking libglu1-mesa:amd64 (9.0.0-2.1) ... Selecting previously unselected package libftgl2:amd64. Preparing to unpack .../libftgl2_2.1.3~rc5-4+nmu1_amd64.deb ... Unpacking libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Selecting previously unselected package x11-common. 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Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0036) ... Setting up fontconfig-config (2.11.94-0ubuntu1) ... Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.2) ... Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Setting up fontconfig (2.11.94-0ubuntu1) ... Regenerating fonts cache... done. Setting up libdrm2:amd64 (2.4.67-1ubuntu0.16.04.1) ... Setting up libglapi-mesa:amd64 (11.2.0-1ubuntu2) ... 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Setting up libgl1-mesa-dri:amd64 (11.2.0-1ubuntu2) ... Setting up libgl1-mesa-glx:amd64 (11.2.0-1ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Setting up x11-common (1:7.7+13ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libblas-common (3.6.0-2ubuntu2) ... 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Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up diffstat (1.61-1) ... Setting up libgfortran3:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up libgfortran-5-dev:amd64 (5.4.0-5ubuntu1~16.04) ... Setting up gfortran-5 (5.4.0-5ubuntu1~16.04) ... Setting up gfortran (4:5.3.1-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libsuitesparseconfig4.4.6:amd64 (1:4.4.6-1) ... Setting up libamd2.4.1:amd64 (1:4.4.6-1) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libarpack2 (3.3.0-1build2) ... Setting up libblas-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up liblapack-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libarpack2-dev (3.3.0-1build2) ... Setting up libbtf1.2.1:amd64 (1:4.4.6-1) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libcairo2:amd64 (1.14.6-1) ... Setting up libcamd2.4.1:amd64 (1:4.4.6-1) ... Setting up libccolamd2.9.1:amd64 (1:4.4.6-1) ... Setting up libcolamd2.9.1:amd64 (1:4.4.6-1) ... Setting up libcholmod3.0.6:amd64 (1:4.4.6-1) ... Setting up libcsparse3.1.4:amd64 (1:4.4.6-1) ... Setting up libcurl3:amd64 (7.47.0-1ubuntu2) ... Setting up libcxsparse3.1.4:amd64 (1:4.4.6-1) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libdrm-dev:amd64 (2.4.67-1ubuntu0.16.04.1) ... Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1) ... Setting up libfreetype6-dev:amd64 (2.6.1-0.1ubuntu2) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libfontconfig1-dev:amd64 (2.11.94-0ubuntu1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.28-2ubuntu1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ... Setting up x11proto-input-dev (2.3.1-1) ... Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu2) ... Setting up mesa-common-dev:amd64 (11.2.0-1ubuntu2) ... Setting up libx11-xcb-dev:amd64 (2:1.6.3-1ubuntu2) ... Setting up libxcb-dri3-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-randr0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-render0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-randr0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-xfixes0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-shape0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-shape0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-xfixes0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-sync-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-present-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxshmfence-dev:amd64 (1.2-1) ... Setting up libxcb-dri2-0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-glx0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up x11proto-fixes-dev (1:5.0-2ubuntu2) ... Setting up libxfixes-dev:amd64 (1:5.0.1-2) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxdamage-dev:amd64 (1:1.1.4-2) ... Setting up libxext-dev:amd64 (2:1.3.3-1) ... Setting up x11proto-xf86vidmode-dev (2.3.1-2) ... Setting up libxxf86vm-dev:amd64 (1:1.1.4-1) ... Setting up x11proto-dri2-dev (2.8-2) ... Setting up x11proto-gl-dev (1.4.17-1) ... Setting up libgl1-mesa-dev:amd64 (11.2.0-1ubuntu2) ... Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1) ... Setting up libftgl-dev (2.1.3~rc5-4+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.6-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (1.0.1-1build2) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libklu1.3.3:amd64 (1:4.4.6-1) ... Setting up libldl2.2.1:amd64 (1:4.4.6-1) ... Setting up libltdl7:amd64 (2.4.6-0.1) ... Setting up libltdl-dev:amd64 (2.4.6-0.1) ... Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libthai-data (0.1.24-2) ... Setting up libthai0:amd64 (0.1.24-2) ... Setting up libpango-1.0-0:amd64 (1.38.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libparpack2 (3.3.0-1build2) ... Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... Setting up libspqr2.0.2:amd64 (1:4.4.6-1) ... Setting up libumfpack5.7.1:amd64 (1:4.4.6-1) ... Setting up libsuitesparse-dev:amd64 (1:4.4.6-1) ... Setting up libsuperlu-dev:amd64 (4.3+dfsg-3) ... Setting up libtcl8.5:amd64 (8.5.19-1) ... Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... Setting up libtiff5:amd64 (4.0.6-1) ... Setting up libtk8.5:amd64 (8.5.19-1ubuntu1) ... Setting up libtk8.6:amd64 (8.6.5-1) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:amd64 (1:0.9.9-0ubuntu1) ... Setting up libxft-dev (2.3.2-1) ... Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libxss-dev:amd64 (1:1.2.2-1) ... Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... Setting up libhwloc5:amd64 (1.11.2-3) ... Setting up libibverbs1 (1.1.8-1.1ubuntu2) ... Setting up libopenmpi1.10 (1.10.2-8ubuntu1) ... Setting up openmpi-common (1.10.2-8ubuntu1) ... Setting up openmpi-bin (1.10.2-8ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up quilt (0.63-3) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20ubuntu1) ... Setting up xdg-utils (1.1.1-1ubuntu1) ... Setting up r-base-core (3.2.3-4) ... Creating config file /etc/R/Renviron with new version Setting up tcl8.5 (8.5.19-1) ... Setting up tcl8.5-dev:amd64 (8.5.19-1) ... Setting up tk8.5 (8.5.19-1ubuntu1) ... Setting up tk8.5-dev:amd64 (8.5.19-1ubuntu1) ... Setting up mpi-default-bin (1.4) ... Setting up libblacs-openmpi1 (1.1-33.3) ... Setting up libibverbs-dev (1.1.8-1.1ubuntu2) ... Setting up libnuma-dev:amd64 (2.0.11-1ubuntu1) ... Setting up libhwloc-dev:amd64 (1.11.2-3) ... Setting up libopenmpi-dev (1.10.2-8ubuntu1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.4) ... Setting up libblacs-mpi-dev (1.1-33.3) ... Setting up libhypre-2.8.0b (2.8.0b-3) ... Setting up libhypre-dev (2.8.0b-3) ... Setting up libscalapack-openmpi1 (1.8.0-12.3) ... Setting up libmumps-4.10.0 (4.10.0.dfsg-4) ... Setting up libscalapack-mpi-dev (1.8.0-12.3) ... Setting up libmumps-dev (4.10.0.dfsg-4) ... Setting up libscotch-5.1 (5.1.12b.dfsg-2build4) ... Setting up libmumps-scotch-4.10.0 (4.10.0.dfsg-4) ... Setting up libmumps-scotch-dev (4.10.0.dfsg-4) ... Setting up libparpack2-dev (3.3.0-1build2) ... Setting up libscotch-dev (5.1.12b.dfsg-2build4) ... Setting up libscotchmetis-dev (5.1.12b.dfsg-2build4) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up dh-autoreconf (11) ... Setting up sbuild-build-depends-elmerfem-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.015-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-4ubuntu6) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-91-generic amd64 (x86_64) Toolchain package versions: binutils_2.26.1-1ubuntu1~16.04 dpkg-dev_1.18.4ubuntu1.1 g++-5_5.4.0-5ubuntu1~16.04 gcc-5_5.4.0-5ubuntu1~16.04 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.4.0-5ubuntu1~16.04 libstdc++6_5.4.0-5ubuntu1~16.04 linux-libc-dev_4.4.0-28.47 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.12~ubuntu16.04.1 apt-transport-https_1.2.12~ubuntu16.04.1 autoconf_2.69-9 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.4ubuntu4.1 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.26.1-1ubuntu1~16.04 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3.1 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 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libreadline6_6.3-8ubuntu2 libreadline6-dev_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libscalapack-mpi-dev_1.8.0-12.3 libscalapack-openmpi1_1.8.0-12.3 libscotch-5.1_5.1.12b.dfsg-2build4 libscotch-dev_5.1.12b.dfsg-2build4 libscotchmetis-dev_5.1.12b.dfsg-2build4 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.3-1build3 libsemanage1_2.3-1build3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-6ubuntu3.1 libspqr2.0.2_1:4.4.6-1 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4.1 libstdc++-5-dev_5.4.0-5ubuntu1~16.04 libstdc++6_5.4.0-5ubuntu1~16.04 libsuitesparse-dev_1:4.4.6-1 libsuitesparseconfig4.4.6_1:4.4.6-1 libsuperlu-dev_4.3+dfsg-3 libsuperlu4_4.3+dfsg-3 libsystemd0_229-4ubuntu6 libtasn1-6_4.7-3ubuntu0.16.04.1 libtcl8.5_8.5.19-1 libtcl8.6_8.6.5+dfsg-2 libthai-data_0.1.24-2 libthai0_0.1.24-2 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160213-1ubuntu1 libtinfo5_6.0+20160213-1ubuntu1 libtk8.5_8.5.19-1ubuntu1 libtk8.6_8.6.5-1 libtool_2.4.6-0.1 libtsan0_5.4.0-5ubuntu1~16.04 libubsan0_5.4.0-5ubuntu1~16.04 libudev1_229-4ubuntu6 libumfpack5.7.1_1:4.4.6-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3.1 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libx11-dev_2:1.6.3-1ubuntu2 libx11-xcb-dev_2:1.6.3-1ubuntu2 libx11-xcb1_2:1.6.3-1ubuntu2 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.11.1-1ubuntu1 libxcb-dri2-0-dev_1.11.1-1ubuntu1 libxcb-dri3-0_1.11.1-1ubuntu1 libxcb-dri3-dev_1.11.1-1ubuntu1 libxcb-glx0_1.11.1-1ubuntu1 libxcb-glx0-dev_1.11.1-1ubuntu1 libxcb-present-dev_1.11.1-1ubuntu1 libxcb-present0_1.11.1-1ubuntu1 libxcb-randr0_1.11.1-1ubuntu1 libxcb-randr0-dev_1.11.1-1ubuntu1 libxcb-render0_1.11.1-1ubuntu1 libxcb-render0-dev_1.11.1-1ubuntu1 libxcb-shape0_1.11.1-1ubuntu1 libxcb-shape0-dev_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb-sync-dev_1.11.1-1ubuntu1 libxcb-sync1_1.11.1-1ubuntu1 libxcb-xfixes0_1.11.1-1ubuntu1 libxcb-xfixes0-dev_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcb1-dev_1.11.1-1ubuntu1 libxdamage-dev_1:1.1.4-2 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1.1 libxdmcp6_1:1.1.2-1.1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.1-2 libxfixes3_1:5.0.1-2 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxml2_2.9.3+dfsg1-1ubuntu0.1 libxrender-dev_1:0.9.9-0ubuntu1 libxrender1_1:0.9.9-0ubuntu1 libxshmfence-dev_1.2-1 libxshmfence1_1.2-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-0ubuntu1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 linux-libc-dev_4.4.0-28.47 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-6 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mesa-common-dev_11.2.0-1ubuntu2 mount_2.27.1-6ubuntu3.1 mpi-default-bin_1.4 mpi-default-dev_1.4 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openmpi-bin_1.10.2-8ubuntu1 openmpi-common_1.10.2-8ubuntu1 openssl_1.0.2g-1ubuntu4.1 optipng_0.7.6-1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu2 quilt_0.63-3 r-base-core_3.2.3-4 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-elmerfem-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 systemd_229-4ubuntu6 systemd-sysv_229-4ubuntu6 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.3ubuntu2 tar_1.28-2.1 tcl8.5_8.5.19-1 tcl8.5-dev_8.5.19-1 tk8.5_8.5.19-1ubuntu1 tk8.5-dev_8.5.19-1ubuntu1 tzdata_2016d-0ubuntu0.16.04 ubuntu-keyring_2012.05.19 ucf_3.0036 unzip_6.0-20ubuntu1 util-linux_2.27.1-6ubuntu3.1 x11-common_1:7.7+13ubuntu3 x11proto-core-dev_7.0.28-2ubuntu1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2ubuntu2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.7-0ubuntu1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xdg-utils_1.1.1-1ubuntu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue Dec 1 11:32:47 2015 UTC using RSA key ID 669CE1C2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./elmerfem_6.1.0.svn.5396.dfsg2-4ubuntu4.dsc dpkg-source: info: extracting elmerfem in elmerfem-6.1.0.svn.5396.dfsg2 dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg2.orig.tar.gz dpkg-source: info: unpacking elmerfem_6.1.0.svn.5396.dfsg2-4ubuntu4.debian.tar.xz dpkg-source: info: applying banish-rpath.patch dpkg-source: info: applying no-metis-partmesh.patch dpkg-source: info: applying elmer-revision.patch dpkg-source: info: applying add-NAMESPACE-for-elmerparam-R-module.patch dpkg-source: info: applying undef-vector.patch dpkg-source: info: applying fix-decls.diff Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package elmerfem dpkg-buildpackage: source version 6.1.0.svn.5396.dfsg2-4ubuntu4 dpkg-buildpackage: source distribution xenial dpkg-source --before-build elmerfem-6.1.0.svn.5396.dfsg2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi dh_testdir for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ if [ -e $elmermodule/Makefile ]; then \ echo; echo CLEANING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule maintainer-clean; \ fi; \ done for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do rm -f $missingfile; done for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in; do \ if [ -e $backupfile.bak ]; then \ mv -f $backupfile.bak $backupfile; \ fi; \ done rm -rf elmergrid/src/metis post/src/fonts/TrueType rm -f stamp-* if [ -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt pop -a && rm -rf .pc; \ fi Removing patch debian/patches/fix-decls.diff Restoring matc/src/main.c Removing patch debian/patches/undef-vector.patch Restoring fem/configure.in Removing patch debian/patches/add-NAMESPACE-for-elmerparam-R-module.patch Removing elmerparam/src/R/elmerparam/NAMESPACE Removing patch debian/patches/elmer-revision.patch Restoring fem/acx_elmer.m4 Removing patch debian/patches/no-metis-partmesh.patch Restoring elmergrid/src/femelmer.c Removing patch debian/patches/banish-rpath.patch Restoring fem/src/Makefile.am No patches applied rm -f eio/aclocal.m4 rm -f hutiter/aclocal.m4 dh_autotools-dev_restoreconfig dh_autoreconf_clean dh_clean debian/rules build if [ ! -d .pc ]; then \ QUILT_PATCHES=debian/patches quilt push -a; \ fi Applying patch debian/patches/banish-rpath.patch patching file fem/src/Makefile.am Applying patch debian/patches/no-metis-partmesh.patch patching file elmergrid/src/femelmer.c Applying patch debian/patches/elmer-revision.patch patching file fem/acx_elmer.m4 Applying patch debian/patches/add-NAMESPACE-for-elmerparam-R-module.patch patching file elmerparam/src/R/elmerparam/NAMESPACE Applying patch debian/patches/undef-vector.patch patching file fem/configure.in Applying patch debian/patches/fix-decls.diff patching file matc/src/main.c Now at patch debian/patches/fix-decls.diff dh_testdir for backupfile in eio/Makefile.in eio/configure eio/include/Makefile.in eio/src/Makefile.in elmergrid/Makefile.in elmergrid/aclocal.m4 elmergrid/configure elmergrid/src/Makefile.in elmerparam/Makefile.in elmerparam/aclocal.m4 elmerparam/config.h.in elmerparam/configure elmerparam/src/Makefile.in elmerparam/src/R/Makefile elmerparam/src/R/elmerparam/src/Makevars elmerparam/src/matlab/Makefile elmerparam/test/Makefile.in fem/Makefile.in fem/aclocal.m4 fem/config.h fem/configure fem/stamp-h1 fem/src/Makefile.in fem/src/binio/Makefile.in fem/src/binio/test/Makefile.in fem/src/view3d/Makefile.in fem/src/viewaxis/Makefile.in fem/tests/Makefile.in fem/tests/runtests front/Makefile.in front/aclocal.m4 front/configure front/include/Makefile.in front/src/Makefile.in front/src/tcl/ecif_tcl_mainScript.tcl hutiter/Makefile.in hutiter/configure hutiter/examples/Makefile.in hutiter/examples/ex1/Makefile.in hutiter/include/Makefile.in hutiter/src/Makefile.in matc/Makefile.in matc/aclocal.m4 matc/configure matc/src/Makefile.in meshgen2d/Makefile.in meshgen2d/aclocal.m4 meshgen2d/configure meshgen2d/src/Makefile.in meshgen2d/src/include/Makefile.in post/Makefile.in post/aclocal.m4 post/configure post/src/Makefile.in post/src/camera/Makefile.in post/src/elements/Makefile.in post/src/glaux/Makefile.in post/src/graphics/Makefile.in post/src/modules/Makefile.in post/src/objects/Makefile.in post/src/sico2elmer/Makefile.in post/src/tcl/Makefile.in post/src/tk/Makefile.in post/src/visuals/Makefile.in; do \ cp -a $backupfile $backupfile.bak; \ done dh_autotools-dev_updateconfig mkdir elmergrid/src/metis install -d post/src/fonts/TrueType for missingfile in eio/NEWS eio/README eio/AUTHORS eio/ChangeLog matc/NEWS matc/README matc/AUTHORS matc/ChangeLog matc/COPYING meshgen2d/NEWS meshgen2d/README meshgen2d/AUTHORS meshgen2d/ChangeLog meshgen2d/COPYING meshgen2d/INSTALL fem/NEWS fem/AUTHORS fem/ChangeLog fem/COPYING fem/INSTALL front/NEWS front/README front/AUTHORS front/COPYING front/INSTALL elmergrid/NEWS elmergrid/README elmergrid/AUTHORS elmergrid/ChangeLog elmergrid/COPYING elmergrid/INSTALL elmergrid/src/metis/Makefile.am post/NEWS post/AUTHORS post/ChangeLog post/COPYING post/INSTALL; do touch $missingfile; done dh_autoreconf aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:30: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1136: ACX_FC_CHAR_MANGLING is expanded from... configure.in:30: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1346: ACX_SHLIB_STUFF is expanded from... configure.in:32: the top level configure.in:9: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:9: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:11: installing './compile' src/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:11: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:13: installing './compile' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:21: warning: AC_CACHE_VAL(modsearch_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:28: ee_FC_MODSEARCH_OPT is expanded from... configure.in:21: the top level configure.in:23: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:1: ee_FC_MODFILE is expanded from... configure.in:23: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:25: warning: AC_CACHE_VAL(iargc_decl, ...): suspicious presence of an AC_SUBST in the second argument, where no actions should be taken ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:88: ee_IARGC_DECL is expanded from... configure.in:25: the top level configure.in:45: warning: AC_CACHE_VAL(mex_ext, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acinclude.m4:66: ee_MEXEXT is expanded from... configure.in:45: the top level configure.in:7: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:7: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:18: installing './compile' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' parallel-tests: installing './test-driver' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:62: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:62: the top level configure.in:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:8: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:13: installing './compile' src/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:6: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:14: installing './compile' src/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:47: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1347: ACX_FC_CHAR_MANGLING is expanded from... configure.in:47: the top level configure.in:54: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1578: ACX_SHLIB_STUFF is expanded from... configure.in:54: the top level configure.in:101: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_blas.m4:33: ACX_BLAS is expanded from... configure.in:101: the top level configure.in:102: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_lapack.m4:31: ACX_LAPACK is expanded from... configure.in:102: the top level configure.in:103: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:131: ACX_HUTI is expanded from... configure.in:103: the top level configure.in:104: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:238: ACX_EIOF is expanded from... configure.in:104: the top level configure.in:105: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:411: ACX_ARPACK is expanded from... configure.in:105: the top level configure.in:107: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:633: ACX_HYPRE is expanded from... configure.in:107: the top level configure.in:108: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:714: ACX_MUMPS is expanded from... configure.in:108: the top level configure.in:109: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:553: ACX_UMFPACK is expanded from... configure.in:109: the top level configure.in:150: warning: AC_CACHE_VAL(modfilename, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2105: ACX_FC_MODFILE is expanded from... configure.in:150: the top level configure.in:152: warning: AC_CACHE_VAL(modput_opt, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2042: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2063: AC_CACHE_CHECK is expanded from... acx_elmer.m4:2134: ACX_FC_PUT_MODULE_FLAG is expanded from... configure.in:152: the top level configure.in:9: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:9: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:13: installing './compile' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' parallel-tests: installing './test-driver' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:7: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:7: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:10: installing './compile' src/Makefile.am:76: warning: '%'-style pattern rules are a GNU make extension src/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:6: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:8: installing './compile' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... acx_elmer.m4:1142: ACX_FC_CHAR_MANGLING is expanded from... configure.in:32: the top level configure.in:73: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... acx_elmer.m4:1352: ACX_SHLIB_STUFF is expanded from... configure.in:73: the top level configure.in:10: installing './compile' src/Makefile.am:48: warning: '%'-style pattern rules are a GNU make extension automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' src/camera/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') set -e; for elmermodule in eio matc elmerparam hutiter meshgen2d fem front elmergrid post; do \ echo; echo CONFIGURING ELMER MODULE $elmermodule; echo; \ (cd $elmermodule && \ # autoconf && \ LIBS="-L/«PKGBUILDDIR»/debian/tmp/usr/lib" \ CPPFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2" \ FCPPFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include" \ CFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC" \ CXXFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC" \ FCFLAGS=" -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC" \ ./configure --prefix=/usr --with-metis=/usr \ --with-mpi-dir=/usr --with-mpi-inc-dir=/usr/include/mpi \ --with-blas=-lblas --with-lapack=-llapack \ --with-mumps=dmumps_scotch); \ echo; echo BUILDING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule; \ echo; echo INSTALLING ELMER MODULE $elmermodule; echo; \ make -C $elmermodule install DESTDIR=/«PKGBUILDDIR»/debian/tmp; \ done CONFIGURING ELMER MODULE eio configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for dummy main to link with Fortran libraries... (cached) none checking whether we are using the Microsoft C compiler... no checking for Fortran char* mangling scheme... char_ptr checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for ANSI C header files... (cached) yes checking whether we are using the Microsoft C compiler... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE eio make[1]: Entering directory '/«PKGBUILDDIR»/eio' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»/eio' Making all in include make[3]: Entering directory '/«PKGBUILDDIR»/eio/include' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/eio/include' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/eio/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOConstraintAgent.o -MD -MP -MF .deps/EIOConstraintAgent.Tpo -c -o EIOConstraintAgent.o EIOConstraintAgent.cpp EIOConstraintAgent.cpp:35:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOConstraintAgent.cpp:35:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOConstraintAgent.Tpo .deps/EIOConstraintAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIODualMeshAgent.o -MD -MP -MF .deps/EIODualMeshAgent.Tpo -c -o EIODualMeshAgent.o EIODualMeshAgent.cpp EIODualMeshAgent.cpp:33:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIODualMeshAgent.cpp:33:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIODualMeshAgent.Tpo .deps/EIODualMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOGeometryAgent.o -MD -MP -MF .deps/EIOGeometryAgent.Tpo -c -o EIOGeometryAgent.o EIOGeometryAgent.cpp EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOGeometryAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOGeometryAgent.Tpo .deps/EIOGeometryAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOMeshAgent.o -MD -MP -MF .deps/EIOMeshAgent.Tpo -c -o EIOMeshAgent.o EIOMeshAgent.cpp EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:77:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOMeshAgent.cpp:84:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOMeshAgent.Tpo .deps/EIOMeshAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelDataAgent.o -MD -MP -MF .deps/EIOModelDataAgent.Tpo -c -o EIOModelDataAgent.o EIOModelDataAgent.cpp EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOModelDataAgent.cpp:111:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOModelDataAgent.Tpo .deps/EIOModelDataAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOModelManager.o -MD -MP -MF .deps/EIOModelManager.Tpo -c -o EIOModelManager.o EIOModelManager.cpp mv -f .deps/EIOModelManager.Tpo .deps/EIOModelManager.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOPartWriter.o -MD -MP -MF .deps/EIOPartWriter.Tpo -c -o EIOPartWriter.o EIOPartWriter.cpp EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOPartWriter.cpp:37:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOPartWriter.Tpo .deps/EIOPartWriter.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT EIOSolverAgent.o -MD -MP -MF .deps/EIOSolverAgent.Tpo -c -o EIOSolverAgent.o EIOSolverAgent.cpp EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] }; ^ EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] EIOSolverAgent.cpp:36:1: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] mv -f .deps/EIOSolverAgent.Tpo .deps/EIOSolverAgent.Po g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_c.o -MD -MP -MF .deps/eio_api_c.Tpo -c -o eio_api_c.o eio_api_c.cpp mv -f .deps/eio_api_c.Tpo .deps/eio_api_c.Po rm -f libeioc.a ar cru libeioc.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_c.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libeioc.a g++ -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -m64 -fPIC -MT eio_api_f.o -MD -MP -MF .deps/eio_api_f.Tpo -c -o eio_api_f.o eio_api_f.cpp mv -f .deps/eio_api_f.Tpo .deps/eio_api_f.Po rm -f libeiof.a ar cru libeiof.a EIOConstraintAgent.o EIODualMeshAgent.o EIOGeometryAgent.o EIOMeshAgent.o EIOModelDataAgent.o EIOModelManager.o EIOPartWriter.o EIOSolverAgent.o eio_api_f.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libeiof.a make[3]: Leaving directory '/«PKGBUILDDIR»/eio/src' make[3]: Entering directory '/«PKGBUILDDIR»/eio' make[3]: Leaving directory '/«PKGBUILDDIR»/eio' make[2]: Leaving directory '/«PKGBUILDDIR»/eio' make[1]: Leaving directory '/«PKGBUILDDIR»/eio' INSTALLING ELMER MODULE eio make[1]: Entering directory '/«PKGBUILDDIR»/eio' Making install in include make[2]: Entering directory '/«PKGBUILDDIR»/eio/include' make[3]: Entering directory '/«PKGBUILDDIR»/eio/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 eio_api.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[3]: Leaving directory '/«PKGBUILDDIR»/eio/include' make[2]: Leaving directory '/«PKGBUILDDIR»/eio/include' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/eio/src' make[3]: Entering directory '/«PKGBUILDDIR»/eio/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libeioc.a libeiof.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libeioc.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libeiof.a ) make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/eio/src' make[2]: Leaving directory '/«PKGBUILDDIR»/eio/src' make[2]: Entering directory '/«PKGBUILDDIR»/eio' make[3]: Entering directory '/«PKGBUILDDIR»/eio' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/eio' make[2]: Leaving directory '/«PKGBUILDDIR»/eio' make[1]: Leaving directory '/«PKGBUILDDIR»/eio' CONFIGURING ELMER MODULE matc configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for default compilation flags... optimized checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for ranlib... ranlib checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking for main in -lm... yes checking for main in -lcurses... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for tputs in -lncurses... yes checking for rl_set_keyboard_input_timeout in -lreadline... yes checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether to enable maintainer-specific portions of Makefiles... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE matc make[1]: Entering directory '/«PKGBUILDDIR»/matc' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»/matc' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/matc/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT c3d.o -MD -MP -MF .deps/c3d.Tpo -c -o c3d.o c3d.c mv -f .deps/c3d.Tpo .deps/c3d.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT clip.o -MD -MP -MF .deps/clip.Tpo -c -o clip.o clip.c mv -f .deps/clip.Tpo .deps/clip.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT dri_ps.o -MD -MP -MF .deps/dri_ps.Tpo -c -o dri_ps.o dri_ps.c mv -f .deps/dri_ps.Tpo .deps/dri_ps.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eig.o -MD -MP -MF .deps/eig.Tpo -c -o eig.o eig.c mv -f .deps/eig.Tpo .deps/eig.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT error.o -MD -MP -MF .deps/error.Tpo -c -o error.o error.c mv -f .deps/error.Tpo .deps/error.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.c mv -f .deps/eval.Tpo .deps/eval.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT files.o -MD -MP -MF .deps/files.Tpo -c -o files.o files.c mv -f .deps/files.Tpo .deps/files.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT funcs.o -MD -MP -MF .deps/funcs.Tpo -c -o funcs.o funcs.c mv -f .deps/funcs.Tpo .deps/funcs.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra.o -MD -MP -MF .deps/gra.Tpo -c -o gra.o gra.c mv -f .deps/gra.Tpo .deps/gra.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT gra_com.o -MD -MP -MF .deps/gra_com.Tpo -c -o gra_com.o gra_com.c mv -f .deps/gra_com.Tpo .deps/gra_com.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT jacobi.o -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.o jacobi.c mv -f .deps/jacobi.Tpo .deps/jacobi.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lists.o -MD -MP -MF .deps/lists.Tpo -c -o lists.o lists.c mv -f .deps/lists.Tpo .deps/lists.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT lu.o -MD -MP -MF .deps/lu.Tpo -c -o lu.o lu.c mv -f .deps/lu.Tpo .deps/lu.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matc.o -MD -MP -MF .deps/matc.Tpo -c -o matc.o matc.c matc.c: In function ‘dogets’: matc.c:406:8: warning: implicit declaration of function ‘isatty’ [-Wimplicit-function-declaration] if (isatty(fileno(math_in)) && isatty(fileno(math_out))) ^ mv -f .deps/matc.Tpo .deps/matc.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT matrix.o -MD -MP -MF .deps/matrix.Tpo -c -o matrix.o matrix.c matrix.c: In function ‘mtr_rand’: matrix.c:189:25: warning: implicit declaration of function ‘time’ [-Wimplicit-function-declaration] if (seed == 0) seed = time(NULL); ^ mv -f .deps/matrix.Tpo .deps/matrix.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT oper.o -MD -MP -MF .deps/oper.Tpo -c -o oper.o oper.c mv -f .deps/oper.Tpo .deps/oper.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT optim.o -MD -MP -MF .deps/optim.Tpo -c -o optim.o optim.c mv -f .deps/optim.Tpo .deps/optim.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o parser.c mv -f .deps/parser.Tpo .deps/parser.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT str.o -MD -MP -MF .deps/str.Tpo -c -o str.o str.c str.c: In function ‘str_sprintf’: str.c:85:5: warning: format not a string literal and no format arguments [-Wformat-security] sprintf(str_pstr, fmt); ^ mv -f .deps/str.Tpo .deps/str.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT urand.o -MD -MP -MF .deps/urand.Tpo -c -o urand.o urand.c mv -f .deps/urand.Tpo .deps/urand.Po gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT variable.o -MD -MP -MF .deps/variable.Tpo -c -o variable.o variable.c mv -f .deps/variable.Tpo .deps/variable.Po rm -f libmatc.a ar cru libmatc.a c3d.o clip.o dri_ps.o eig.o error.o eval.o files.o funcs.o gra.o gra_com.o jacobi.o lists.o lu.o matc.o matrix.o oper.o optim.o parser.o str.o urand.o variable.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmatc.a gcc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c main.c: In function ‘main’: main.c:25:9: warning: implicit declaration of function ‘mtc_init’ [-Wimplicit-function-declaration] (void)mtc_init( stdin, stdout, stderr ); ^ mv -f .deps/main.Tpo .deps/main.Po gcc -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -o matc main.o libmatc.a -lreadline -lncurses -lcurses -lm -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[3]: Leaving directory '/«PKGBUILDDIR»/matc/src' make[3]: Entering directory '/«PKGBUILDDIR»/matc' make[3]: Leaving directory '/«PKGBUILDDIR»/matc' make[2]: Leaving directory '/«PKGBUILDDIR»/matc' make[1]: Leaving directory '/«PKGBUILDDIR»/matc' INSTALLING ELMER MODULE matc make[1]: Entering directory '/«PKGBUILDDIR»/matc' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/matc/src' make[3]: Entering directory '/«PKGBUILDDIR»/matc/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c matc '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libmatc.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libmatc.a ) /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/elmer' /usr/bin/install -c -m 644 elmer/matc.h elmer/fnames.h elmer/gra.h '/«PKGBUILDDIR»/debian/tmp/usr/include/elmer' make[3]: Leaving directory '/«PKGBUILDDIR»/matc/src' make[2]: Leaving directory '/«PKGBUILDDIR»/matc/src' make[2]: Entering directory '/«PKGBUILDDIR»/matc' make[3]: Entering directory '/«PKGBUILDDIR»/matc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/matc' make[2]: Leaving directory '/«PKGBUILDDIR»/matc' make[1]: Leaving directory '/«PKGBUILDDIR»/matc' CONFIGURING ELMER MODULE elmerparam configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for ranlib... ranlib checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for xlf90... no checking for pathf90... no checking for ifort... no checking for f95... f95 checking whether we are using the GNU Fortran compiler... yes checking whether f95 accepts -g... yes checking how to get verbose linking output from f95... -v checking for Fortran libraries of f95... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for option needed by f95 to find non-local *.mod-files... -I checking for *.mod-file naming convention... modulename.mod checking for iargc() declaration needed in Fortran code... !none iargc_decl = !none ./configure: line 4613: ACX_CHECK_B64FLAGS: command not found checking for R... yes checking for matlab... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/iargc_decl.inc config.status: creating src/R/elmerparam/src/Makevars config.status: creating src/R/Makefile config.status: creating src/matlab/Makefile config.status: creating test/Makefile config.status: creating test/make.inc config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE elmerparam make[1]: Entering directory '/«PKGBUILDDIR»/elmerparam' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»/elmerparam' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam/src' Making all in . make[4]: Entering directory '/«PKGBUILDDIR»/elmerparam/src' cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT elmerparam.o -MD -MP -MF .deps/elmerparam.Tpo -c -o elmerparam.o elmerparam.c mv -f .deps/elmerparam.Tpo .deps/elmerparam.Po cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT modelline.o -MD -MP -MF .deps/modelline.Tpo -c -o modelline.o modelline.c mv -f .deps/modelline.Tpo .deps/modelline.Po cc -DHAVE_CONFIG_H -I. -I.. -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -MT dynarray.o -MD -MP -MF .deps/dynarray.Tpo -c -o dynarray.o dynarray.c mv -f .deps/dynarray.Tpo .deps/dynarray.Po rm -f libelmerparam.a ar cru libelmerparam.a elmerparam.o modelline.o dynarray.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libelmerparam.a f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -c -o elmerparamf.o elmerparamf.f90 rm -f libelmerparamf.a ar cru libelmerparamf.a elmerparamf.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libelmerparamf.a f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -c -o ElmerParam.o ElmerParam.f90 f95 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -o ElmerParam ElmerParam.o libelmerparamf.a libelmerparam.a -L/usr/lib -lmatc -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[4]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src' Making all in R make[4]: Entering directory '/«PKGBUILDDIR»/elmerparam/src/R' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src/R' make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src' Making all in test make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam/test' make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam' make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam' make[2]: Leaving directory '/«PKGBUILDDIR»/elmerparam' make[1]: Leaving directory '/«PKGBUILDDIR»/elmerparam' INSTALLING ELMER MODULE elmerparam make[1]: Entering directory '/«PKGBUILDDIR»/elmerparam' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/elmerparam/src' Making install in . make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam/src' make[4]: Entering directory '/«PKGBUILDDIR»/elmerparam/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c ElmerParam '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c elmerparam.mod /«PKGBUILDDIR»/debian/tmp/usr/include /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libelmerparam.a libelmerparamf.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libelmerparam.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libelmerparamf.a ) /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 elmerparam.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[4]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src' make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src' Making install in R make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam/src/R' R CMD build elmerparam * checking for file ‘elmerparam/DESCRIPTION’ ... OK * preparing ‘elmerparam’: * checking DESCRIPTION meta-information ... OK * cleaning src Warning: /tmp/RtmpULToiU/Rbuild4ad442e86f9f/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building ‘elmerparam_1.0.tar.gz’ test -z "/«PKGBUILDDIR»/debian/tmp/usr/lib/R" || mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/lib/R R CMD INSTALL -l /«PKGBUILDDIR»/debian/tmp/usr/lib/R elmerparam * installing *source* package ‘elmerparam’ ... ** libs make[4]: Entering directory '/«PKGBUILDDIR»/elmerparam/src/R/elmerparam/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/«PKGBUILDDIR»/debian/tmp/usr/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c elmerparam_rwrapper.c -o elmerparam_rwrapper.o elmerparam_rwrapper.c: In function ‘elmerparam_rwrapper’: elmerparam_rwrapper.c:55:8: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] tagp = CHAR(tag); ^ gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o elmerparam.so elmerparam_rwrapper.o -L/usr/lib -L/«PKGBUILDDIR»/debian/tmp/usr/lib -lelmerparam -lmatc -L/usr/lib/R/lib -lR make[4]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src/R/elmerparam/src' installing to /«PKGBUILDDIR»/debian/tmp/usr/lib/R/elmerparam/libs ** R ** preparing package for lazy loading ** help Warning: /«PKGBUILDDIR»/elmerparam/src/R/elmerparam/man/elmer-package.Rd:33: All text must be in a section Warning: /«PKGBUILDDIR»/elmerparam/src/R/elmerparam/man/elmerparam.Rd:29: unexpected section header '\section' *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (elmerparam) make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src/R' make[2]: Leaving directory '/«PKGBUILDDIR»/elmerparam/src' Making install in test make[2]: Entering directory '/«PKGBUILDDIR»/elmerparam/test' make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam/test' make[2]: Leaving directory '/«PKGBUILDDIR»/elmerparam/test' make[2]: Entering directory '/«PKGBUILDDIR»/elmerparam' make[3]: Entering directory '/«PKGBUILDDIR»/elmerparam' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/elmerparam' make[2]: Leaving directory '/«PKGBUILDDIR»/elmerparam' make[1]: Leaving directory '/«PKGBUILDDIR»/elmerparam' CONFIGURING ELMER MODULE hutiter configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for default compilation flags... optimized checking for xlc... no checking for pathcc... no checking for icc... no checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether we are using the Microsoft C compiler... no checking for e_wsfe in -lg2c... no checking for saxpy_ in -lblas... checking for in ... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating examples/Makefile config.status: creating examples/ex1/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-lapack, --with-mumps BUILDING ELMER MODULE hutiter make[1]: Entering directory '/«PKGBUILDDIR»/hutiter' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»/hutiter' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/src' gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_C.o huti_aux_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_D.o huti_aux_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_S.o huti_aux_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_aux_Z.o huti_aux_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_C.o huti_bicgstab_2_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_D.o huti_bicgstab_2_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_S.o huti_bicgstab_2_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_2_Z.o huti_bicgstab_2_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_C.o huti_bicgstab_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_D.o huti_bicgstab_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_S.o huti_bicgstab_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_bicgstab_Z.o huti_bicgstab_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_C.o huti_cg_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_D.o huti_cg_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_C.o huti_cgs_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_D.o huti_cgs_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_S.o huti_cg_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_S.o huti_cgs_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cgs_Z.o huti_cgs_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_cg_Z.o huti_cg_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_C.o huti_gmres_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_D.o huti_gmres_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_S.o huti_gmres_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_gmres_Z.o huti_gmres_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_C.o huti_qmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_D.o huti_qmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_S.o huti_qmr_S.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_qmr_Z.o huti_qmr_Z.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_C.o huti_tfqmr_C.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_D.o huti_tfqmr_D.F90 gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_S.o huti_tfqmr_S.F90 cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_main.o -MD -MP -MF .deps/huti_main.Tpo -c -o huti_main.o huti_main.c mv -f .deps/huti_main.Tpo .deps/huti_main.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_C.o -MD -MP -MF .deps/huti_sfe_c_C.Tpo -c -o huti_sfe_c_C.o huti_sfe_c_C.c huti_sfe_c_C.c: In function ‘huti_c_cg_’: huti_sfe_c_C.c:124:3: warning: implicit declaration of function ‘HUTI_Init’ [-Wimplicit-function-declaration] HUTI_Init(); ^ mv -f .deps/huti_sfe_c_C.Tpo .deps/huti_sfe_c_C.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_D.o -MD -MP -MF .deps/huti_sfe_c_D.Tpo -c -o huti_sfe_c_D.o huti_sfe_c_D.c huti_sfe_c_D.c: In function ‘huti_d_cg_’: huti_sfe_c_D.c:124:3: warning: implicit declaration of function ‘HUTI_Init’ [-Wimplicit-function-declaration] HUTI_Init(); ^ mv -f .deps/huti_sfe_c_D.Tpo .deps/huti_sfe_c_D.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_S.o -MD -MP -MF .deps/huti_sfe_c_S.Tpo -c -o huti_sfe_c_S.o huti_sfe_c_S.c huti_sfe_c_S.c: In function ‘huti_s_cg_’: huti_sfe_c_S.c:124:3: warning: implicit declaration of function ‘HUTI_Init’ [-Wimplicit-function-declaration] HUTI_Init(); ^ mv -f .deps/huti_sfe_c_S.Tpo .deps/huti_sfe_c_S.Po cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I/usr/include -MT huti_sfe_c_Z.o -MD -MP -MF .deps/huti_sfe_c_Z.Tpo -c -o huti_sfe_c_Z.o huti_sfe_c_Z.c huti_sfe_c_Z.c: In function ‘huti_z_cg_’: huti_sfe_c_Z.c:125:3: warning: implicit declaration of function ‘HUTI_Init’ [-Wimplicit-function-declaration] HUTI_Init(); ^ mv -f .deps/huti_sfe_c_Z.Tpo .deps/huti_sfe_c_Z.Po gfortran -DHAVE_CONFIG_H -I. -I.. -I../include -I../include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -fPIC -m64 -fPIC -I. -I/usr/include -c -o huti_tfqmr_Z.o huti_tfqmr_Z.F90 rm -f libhuti.a ar cru libhuti.a huti_aux_C.o huti_aux_D.o huti_aux_S.o huti_aux_Z.o huti_bicgstab_2_C.o huti_bicgstab_2_D.o huti_bicgstab_2_S.o huti_bicgstab_2_Z.o huti_bicgstab_C.o huti_bicgstab_D.o huti_bicgstab_S.o huti_bicgstab_Z.o huti_cg_C.o huti_cg_D.o huti_cgs_C.o huti_cgs_D.o huti_cg_S.o huti_cgs_S.o huti_cgs_Z.o huti_cg_Z.o huti_gmres_C.o huti_gmres_D.o huti_gmres_S.o huti_gmres_Z.o huti_qmr_C.o huti_qmr_D.o huti_qmr_S.o huti_qmr_Z.o huti_tfqmr_C.o huti_tfqmr_D.o huti_tfqmr_S.o huti_main.o huti_sfe_c_C.o huti_sfe_c_D.o huti_sfe_c_S.o huti_sfe_c_Z.o huti_tfqmr_Z.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libhuti.a make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/src' Making all in include make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/include' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/include' Making all in examples make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/examples' Making all in ex1 make[4]: Entering directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Entering directory '/«PKGBUILDDIR»/hutiter/examples' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples' make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples' make[3]: Entering directory '/«PKGBUILDDIR»/hutiter' make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter' make[2]: Leaving directory '/«PKGBUILDDIR»/hutiter' make[1]: Leaving directory '/«PKGBUILDDIR»/hutiter' INSTALLING ELMER MODULE hutiter make[1]: Entering directory '/«PKGBUILDDIR»/hutiter' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/hutiter/src' make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib' /usr/bin/install -c -m 644 libhuti.a '/«PKGBUILDDIR»/debian/tmp/usr/lib' ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib' && ranlib libhuti.a ) make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/src' make[2]: Leaving directory '/«PKGBUILDDIR»/hutiter/src' Making install in include make[2]: Entering directory '/«PKGBUILDDIR»/hutiter/include' make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include' /usr/bin/install -c -m 644 huti_defs.h huti_fdefs.h '/«PKGBUILDDIR»/debian/tmp/usr/include' make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/include' make[2]: Leaving directory '/«PKGBUILDDIR»/hutiter/include' Making install in examples make[2]: Entering directory '/«PKGBUILDDIR»/hutiter/examples' Making install in ex1 make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Entering directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples/ex1' make[3]: Entering directory '/«PKGBUILDDIR»/hutiter/examples' make[4]: Entering directory '/«PKGBUILDDIR»/hutiter/examples' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples' make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples' make[2]: Leaving directory '/«PKGBUILDDIR»/hutiter/examples' make[2]: Entering directory '/«PKGBUILDDIR»/hutiter' make[3]: Entering directory '/«PKGBUILDDIR»/hutiter' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/hutiter' make[2]: Leaving directory '/«PKGBUILDDIR»/hutiter' make[1]: Leaving directory '/«PKGBUILDDIR»/hutiter' CONFIGURING ELMER MODULE meshgen2d configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for default compilation flags... optimized checking for answer to meaning of life... 42 checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for main in -lstdc++... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether to enable maintainer-specific portions of Makefiles... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/include/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --with-metis, --with-mpi-dir, --with-mpi-inc-dir, --with-blas, --with-lapack, --with-mumps BUILDING ELMER MODULE meshgen2d make[1]: Entering directory '/«PKGBUILDDIR»/meshgen2d' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»/meshgen2d' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src' Making all in include make[4]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src' g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGGridMesh.o -MD -MP -MF .deps/BGGridMesh.Tpo -c -o BGGridMesh.o BGGridMesh.cpp mv -f .deps/BGGridMesh.Tpo .deps/BGGridMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGTriangleMesh.o -MD -MP -MF .deps/BGTriangleMesh.Tpo -c -o BGTriangleMesh.o BGTriangleMesh.cpp mv -f .deps/BGTriangleMesh.Tpo .deps/BGTriangleMesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BGVertex.o -MD -MP -MF .deps/BGVertex.Tpo -c -o BGVertex.o BGVertex.cpp mv -f .deps/BGVertex.Tpo .deps/BGVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Body.o -MD -MP -MF .deps/Body.Tpo -c -o Body.o Body.cpp mv -f .deps/Body.Tpo .deps/Body.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryElement.o -MD -MP -MF .deps/BoundaryElement.Tpo -c -o BoundaryElement.o BoundaryElement.cpp mv -f .deps/BoundaryElement.Tpo .deps/BoundaryElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT BoundaryLayer.o -MD -MP -MF .deps/BoundaryLayer.Tpo -c -o BoundaryLayer.o BoundaryLayer.cpp mv -f .deps/BoundaryLayer.Tpo .deps/BoundaryLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Connect.o -MD -MP -MF .deps/Connect.Tpo -c -o Connect.o Connect.cpp mv -f .deps/Connect.Tpo .deps/Connect.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Element.o -MD -MP -MF .deps/Element.Tpo -c -o Element.o Element.cpp mv -f .deps/Element.Tpo .deps/Element.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT GeometryEdge.o -MD -MP -MF .deps/GeometryEdge.Tpo -c -o GeometryEdge.o GeometryEdge.cpp mv -f .deps/GeometryEdge.Tpo .deps/GeometryEdge.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp mv -f .deps/main.Tpo .deps/main.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Mesh.o -MD -MP -MF .deps/Mesh.Tpo -c -o Mesh.o Mesh.cpp mv -f .deps/Mesh.Tpo .deps/Mesh.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshNode.o -MD -MP -MF .deps/MeshNode.Tpo -c -o MeshNode.o MeshNode.cpp mv -f .deps/MeshNode.Tpo .deps/MeshNode.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT MeshParser.o -MD -MP -MF .deps/MeshParser.Tpo -c -o MeshParser.o MeshParser.cpp mv -f .deps/MeshParser.Tpo .deps/MeshParser.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o Node.cpp mv -f .deps/Node.Tpo .deps/Node.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT PQ.o -MD -MP -MF .deps/PQ.Tpo -c -o PQ.o PQ.cpp mv -f .deps/PQ.Tpo .deps/PQ.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadElement.o -MD -MP -MF .deps/QuadElement.Tpo -c -o QuadElement.o QuadElement.cpp mv -f .deps/QuadElement.Tpo .deps/QuadElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT QuadLayer.o -MD -MP -MF .deps/QuadLayer.Tpo -c -o QuadLayer.o QuadLayer.cpp mv -f .deps/QuadLayer.Tpo .deps/QuadLayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSMFVoronoiSegment.o -MD -MP -MF .deps/SSMFVoronoiSegment.Tpo -c -o SSMFVoronoiSegment.o SSMFVoronoiSegment.cpp mv -f .deps/SSMFVoronoiSegment.Tpo .deps/SSMFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT SSSFVoronoiSegment.o -MD -MP -MF .deps/SSSFVoronoiSegment.Tpo -c -o SSSFVoronoiSegment.o SSSFVoronoiSegment.cpp mv -f .deps/SSSFVoronoiSegment.Tpo .deps/SSSFVoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleElement.o -MD -MP -MF .deps/TriangleElement.Tpo -c -o TriangleElement.o TriangleElement.cpp mv -f .deps/TriangleElement.Tpo .deps/TriangleElement.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT TriangleNELayer.o -MD -MP -MF .deps/TriangleNELayer.Tpo -c -o TriangleNELayer.o TriangleNELayer.cpp mv -f .deps/TriangleNELayer.Tpo .deps/TriangleNELayer.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT Vertex.o -MD -MP -MF .deps/Vertex.Tpo -c -o Vertex.o Vertex.cpp mv -f .deps/Vertex.Tpo .deps/Vertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiSegment.o -MD -MP -MF .deps/VoronoiSegment.Tpo -c -o VoronoiSegment.o VoronoiSegment.cpp mv -f .deps/VoronoiSegment.Tpo .deps/VoronoiSegment.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VoronoiVertex.o -MD -MP -MF .deps/VoronoiVertex.Tpo -c -o VoronoiVertex.o VoronoiVertex.cpp mv -f .deps/VoronoiVertex.Tpo .deps/VoronoiVertex.Po g++ -DHAVE_CONFIG_H -I. -I.. -I./include -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -MT VSVertex.o -MD -MP -MF .deps/VSVertex.Tpo -c -o VSVertex.o VSVertex.cpp mv -f .deps/VSVertex.Tpo .deps/VSVertex.Po g++ -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o ElmerMesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/«PKGBUILDDIR»/debian/tmp/usr/lib g++ -I/«PKGBUILDDIR»/debian/tmp/usr/include -I/usr/include/freetype2 -fPIC -o Mesh2D BGGridMesh.o BGTriangleMesh.o BGVertex.o Body.o BoundaryElement.o BoundaryLayer.o Connect.o Element.o GeometryEdge.o main.o Mesh.o MeshNode.o MeshParser.o Node.o PQ.o QuadElement.o QuadLayer.o SSMFVoronoiSegment.o SSSFVoronoiSegment.o TriangleElement.o TriangleNELayer.o Vertex.o VoronoiSegment.o VoronoiVertex.o VSVertex.o -lstdc++ -L/«PKGBUILDDIR»/debian/tmp/usr/lib make[4]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src' make[3]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src' make[3]: Entering directory '/«PKGBUILDDIR»/meshgen2d' make[3]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' make[2]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' make[1]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' INSTALLING ELMER MODULE meshgen2d make[1]: Entering directory '/«PKGBUILDDIR»/meshgen2d' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src' Making install in include make[3]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[3]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src/include' make[3]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src' make[4]: Entering directory '/«PKGBUILDDIR»/meshgen2d/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c ElmerMesh2D Mesh2D '/«PKGBUILDDIR»/debian/tmp/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src' make[3]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src' make[2]: Leaving directory '/«PKGBUILDDIR»/meshgen2d/src' make[2]: Entering directory '/«PKGBUILDDIR»/meshgen2d' make[3]: Entering directory '/«PKGBUILDDIR»/meshgen2d' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' make[2]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' make[1]: Leaving directory '/«PKGBUILDDIR»/meshgen2d' CONFIGURING ELMER MODULE fem configure: WARNING: unrecognized options: --with-metis checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ftello... yes checking for fseeko... yes checking for answer to meaning of life... 42 checking for default compilation flags... optimized checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking for xlC... no checking for pathCC... no checking for icc... no checking for CC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ranlib... ranlib checking for ar... ar checking for ar flags... cru checking whether we are using the Microsoft C compiler... no checking for /lib/cpp... yes checking for C++ linker flags... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lgcc_s -lgcc_s checking how to run the C preprocessor... /lib/cpp checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for 64 bit compilation flags... let's see what happens checking for 64 bit CFLAGS... -m64 -fPIC checking for 64 bit FCFLAGS... -m64 -fPIC checking for 64 bit CXXFLAGS... -m64 -fPIC checking for 64 bit FFLAGS... -m64 -fPIC checking size of void*... 8 checking to see if we got 64 bits... oh yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/«PKGBUILDDIR»/debian/tmp/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for Fortran char* mangling scheme... char_ptr checking if fortran implements CONTIGUOUS attribute... yes checking for fortran intrinsic etime... found checking for fortran intrinsic flush... found checking for shl_load in -ldld... no checking for shl_load... no checking for shl_findsym... no checking for dlopen in -ldl... yes checking for dlopen... yes checking for dlsym... yes checking for dlerror... yes checking for dlclose... yes checking for mpi-directory... /usr checking for mpi-lib-directory... /usr/lib checking for mpi-inc-directory... /usr/include/mpi checking for mpi-library... checking for mpi-include... checking for compilation of an MPI program... seems ok checking for mpf90... no checking for mpxlf90... no checking for saxpy_ in -lblas... checking for in ... yes checking for cheev_ in -llapack... yes checking for huti_d_gmres_ in -lhuti... yes checking for eio_init_ in -leiof... yes checking for dseupd_ in -larpack... yes checking for pdneupd_ in -lparpack... no configure: WARNING: No parallel arpack found. checking for HYPRE_IJMatrixCreate in -lHYPRE_IJ_mv... yes checking for dmumps_ in -ldmumps_scotch... yes checking for umfpack_di_defaults in -lumfpack... yes checking for mtc_init in -lmatc... yes checking for main in -lm... yes configure: error: The MPI version needs parpack. Disabling MPI. debian/rules:91: recipe for target 'stamp-build' failed make: *** [stamp-build] Error 1 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160701-0255 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 122900 Build-Time: 106 Distribution: xenial Fail-Stage: build Host Architecture: amd64 Install-Time: 67 Job: elmerfem_6.1.0.svn.5396.dfsg2-4ubuntu4.dsc Machine Architecture: amd64 Package: elmerfem Package-Time: 176 Source-Version: 6.1.0.svn.5396.dfsg2-4ubuntu4 Space: 122900 Status: attempted Version: 6.1.0.svn.5396.dfsg2-4ubuntu4 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160701-0255 Build needed 00:02:56, 122900k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9931290'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9931290/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9931290'] Unmounting chroot for build PACKAGEBUILD-9931290... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9931290'] Removing build PACKAGEBUILD-9931290