RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed03 4.4.0-31-powerpc64-smp #50~14.04.1-Ubuntu SMP Wed Jul 13 01:32:29 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 25 Jul 16:35:35 ntpdate[23739]: adjust time server 10.211.37.1 offset 0.000451 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10203156', '/home/buildd/filecache-default/9f1060e2bab22ae2edac374e1f3ab0aa330b1d76'] Unpacking chroot for build PACKAGEBUILD-10203156 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10203156'] Mounting chroot for build PACKAGEBUILD-10203156 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10203156', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe'] Overriding sources.list in build-PACKAGEBUILD-10203156 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10203156', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-10203156 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc Packages [1143 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [570 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/universe powerpc Packages [7497 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4481 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety-security/main powerpc Packages [64 B] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/universe powerpc Packages [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-updates/main powerpc Packages [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/universe powerpc Packages [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Fetched 14.1 MB in 49s (283 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libpng16-16 libprocps6 The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp-5 debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers insserv libapt-pkg5.0 libasan2 libatomic1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libisl15 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma5 libmount1 libmpfr4 libncurses5 libncursesw5 libperl5.22 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 116 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 60.3 MB of archives. After this operation, 9583 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu yakkety/main powerpc base-files powerpc 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc debianutils powerpc 4.8 [84.9 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main powerpc bash powerpc 4.3-15ubuntu1 [524 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc bsdutils powerpc 1:2.28-5ubuntu2 [53.8 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc tar powerpc 1.29b-1 [205 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main powerpc dpkg powerpc 1.18.9ubuntu2 [2142 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main powerpc libc6-dev powerpc 2.23-1ubuntu1 [1866 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc libc-dev-bin powerpc 2.23-1ubuntu1 [61.9 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main powerpc linux-libc-dev powerpc 4.4.0-31.50 [825 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-6-base powerpc 6.1.1-10ubuntu11 [17.0 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgcc1 powerpc 1:6.1.1-10ubuntu11 [27.0 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main powerpc libc6 powerpc 2.23-1ubuntu1 [2287 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main powerpc e2fslibs powerpc 1.43.1-1 [153 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main powerpc e2fsprogs powerpc 1.43.1-1 [465 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main powerpc findutils powerpc 4.6.0+git+20160703-2 [275 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main powerpc grep powerpc 2.25-6 [144 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main powerpc hostname powerpc 3.18 [10.8 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main powerpc login powerpc 1:4.2-3.1ubuntu6 [301 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsmartcols1 powerpc 2.28-5ubuntu2 [59.2 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main powerpc libselinux1 powerpc 2.5-3 [58.7 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsepol1 powerpc 2.5-1 [180 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsemanage-common all 2.5-1 [6800 B] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsemanage1 powerpc 2.5-1 [68.4 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main powerpc bzip2 powerpc 1.0.6-8build1 [31.4 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main powerpc libbz2-1.0 powerpc 1.0.6-8build1 [31.4 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main powerpc passwd powerpc 1:4.2-3.1ubuntu6 [734 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main powerpc libuuid1 powerpc 2.28-5ubuntu2 [16.4 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main powerpc libblkid1 powerpc 2.28-5ubuntu2 [98.5 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfdisk1 powerpc 2.28-5ubuntu2 [124 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main powerpc perl-modules-5.22 all 5.22.2-2 [2632 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main powerpc libperl5.22 powerpc 5.22.2-2 [2785 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main powerpc perl powerpc 5.22.2-2 [237 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main powerpc perl-base powerpc 5.22.2-2 [1168 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main powerpc libdb5.3 powerpc 5.3.28-12 [581 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgdbm3 powerpc 1.8.3-14 [16.1 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main powerpc zlib1g powerpc 1:1.2.8.dfsg-2ubuntu5 [47.3 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main powerpc insserv powerpc 1.14.0-5.3ubuntu1 [35.3 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main powerpc init-system-helpers all 1.39 [37.2 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main powerpc util-linux powerpc 2.28-5ubuntu2 [807 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main powerpc sysvinit-utils powerpc 2.88dsf-59.8git1 [17.9 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main powerpc mount powerpc 2.28-5ubuntu2 [117 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main powerpc ncurses-bin powerpc 6.0+20160625-1ubuntu1 [130 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main powerpc sed powerpc 4.2.2-7.1 [135 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main powerpc init powerpc 1.39 [5076 B] Get:45 http://ftpmaster.internal/ubuntu yakkety/main powerpc libc-bin powerpc 2.23-1ubuntu1 [517 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main powerpc ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main powerpc liblzma5 powerpc 5.1.1alpha+20120614-2.1ubuntu1 [80.8 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main powerpc libstdc++6 powerpc 6.1.1-10ubuntu11 [410 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main powerpc libapt-pkg5.0 powerpc 1.3~exp1 [682 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main powerpc ubuntu-keyring all 2016.05.13 [16.5 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main powerpc apt powerpc 1.3~exp1 [1025 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main powerpc debconf all 1.5.59ubuntu1 [136 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgpg-error0 powerpc 1.24-1 [33.0 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgcrypt20 powerpc 1.7.2-2 [345 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcap2 powerpc 1:2.25-1 [13.1 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main powerpc libudev1 powerpc 230-7 [53.9 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main powerpc libdevmapper1.02.1 powerpc 2:1.02.130-1ubuntu1 [133 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcryptsetup4 powerpc 2:1.7.2-0ubuntu1 [70.2 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main powerpc libidn11 powerpc 1.33-1 [43.1 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main powerpc libkmod2 powerpc 22-1.1ubuntu1 [37.6 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main powerpc libmount1 powerpc 2.28-5ubuntu2 [102 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main powerpc libseccomp2 powerpc 2.3.1-2ubuntu2 [34.8 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcap2-bin powerpc 1:2.25-1 [20.3 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsystemd0 powerpc 230-7 [189 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main powerpc systemd powerpc 230-7 [2011 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main powerpc systemd-sysv powerpc 230-7 [16.0 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcomerr2 powerpc 1.43.1-1 [9868 B] Get:68 http://ftpmaster.internal/ubuntu yakkety/main powerpc libdebconfclient0 powerpc 0.213ubuntu1 [6012 B] Get:69 http://ftpmaster.internal/ubuntu yakkety/main powerpc libncurses5 powerpc 6.0+20160625-1ubuntu1 [81.1 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtinfo5 powerpc 6.0+20160625-1ubuntu1 [70.1 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main powerpc libncursesw5 powerpc 6.0+20160625-1ubuntu1 [100 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main powerpc libss2 powerpc 1.43.1-1 [10.7 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main powerpc lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main powerpc multiarch-support powerpc 2.23-1ubuntu1 [6820 B] Get:75 http://ftpmaster.internal/ubuntu yakkety/main powerpc libusb-0.1-4 powerpc 2:0.1.12-30 [15.7 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main powerpc libprocps6 powerpc 2:3.3.12-1ubuntu2 [28.9 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main powerpc procps powerpc 2:3.3.12-1ubuntu2 [214 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main powerpc tzdata all 2016f-1 [169 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main powerpc dmsetup powerpc 2:1.02.130-1ubuntu1 [67.4 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main powerpc libslang2 powerpc 2.3.0-2.3ubuntu1 [365 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsqlite3-0 powerpc 3.13.0-1 [419 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main powerpc libssl1.0.0 powerpc 1.0.2g-1ubuntu5 [755 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgmp10 powerpc 2:6.1.1+dfsg-1 [198 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtasn1-6 powerpc 4.8-1 [39.3 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgnutls30 powerpc 3.4.14-1ubuntu1 [451 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgssapi-krb5-2 powerpc 1.14.2+dfsg-1ubuntu1 [103 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main powerpc libkrb5-3 powerpc 1.14.2+dfsg-1ubuntu1 [240 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main powerpc libkrb5support0 powerpc 1.14.2+dfsg-1ubuntu1 [30.1 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main powerpc libk5crypto3 powerpc 1.14.2+dfsg-1ubuntu1 [81.5 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsasl2-modules-db powerpc 2.1.26.dfsg1-15 [14.0 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsasl2-2 powerpc 2.1.26.dfsg1-15 [43.6 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main powerpc libldap-2.4-2 powerpc 2.4.42+dfsg-2ubuntu4 [141 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main powerpc librtmp1 powerpc 2.4+20151223.gitfa8646d.1-1 [49.7 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcurl3-gnutls powerpc 7.47.0-1ubuntu3 [166 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main powerpc apt-transport-https powerpc 1.3~exp1 [25.9 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpng16-16 powerpc 1.6.23-1 [163 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main powerpc openssl powerpc 1.0.2g-1ubuntu5 [465 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main powerpc binutils powerpc 2.26.1-1ubuntu2 [2233 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgomp1 powerpc 6.1.1-10ubuntu11 [69.5 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main powerpc libatomic1 powerpc 6.1.1-10ubuntu11 [7428 B] Get:101 http://ftpmaster.internal/ubuntu yakkety/main powerpc libasan2 powerpc 5.4.0-6ubuntu1 [228 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main powerpc libubsan0 powerpc 6.1.1-10ubuntu11 [104 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main powerpc g++-5 powerpc 5.4.0-6ubuntu1 [8132 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-5 powerpc 5.4.0-6ubuntu1 [8178 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety/main powerpc libstdc++-5-dev powerpc 5.4.0-6ubuntu1 [1376 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgcc-5-dev powerpc 5.4.0-6ubuntu1 [494 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcc1-0 powerpc 6.1.1-10ubuntu11 [30.1 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main powerpc cpp-5 powerpc 5.4.0-6ubuntu1 [7464 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-5-base powerpc 5.4.0-6ubuntu1 [16.7 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main powerpc libisl15 powerpc 0.17.1-1 [441 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main powerpc libmpfr4 powerpc 3.1.4-2 [176 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main powerpc dpkg-dev all 1.18.9ubuntu2 [641 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main powerpc libdpkg-perl all 1.18.9ubuntu2 [203 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main powerpc xz-utils powerpc 5.1.1alpha+20120614-2.1ubuntu1 [79.5 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main powerpc make powerpc 4.1-9 [141 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main powerpc optipng powerpc 0.7.6-1build1 [80.2 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main powerpc pkgbinarymangler all 130 [43.2 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main powerpc policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 60.3 MB in 1min 9s (871 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu2_powerpc.deb ... Unpacking base-files (9.6ubuntu2) over (9.6ubuntu1) ... Setting up base-files (9.6ubuntu2) ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:powerpc (1:6.1.1-10ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11973 files and directories currently installed.) Preparing to unpack .../libc6_2.23-1ubuntu1_powerpc.deb ... Unpacking libc6:powerpc (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc6:powerpc (2.23-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11973 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.1-1_powerpc.deb ... Unpacking e2fslibs:powerpc (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up e2fslibs:powerpc (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_powerpc.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../libblkid1_2.28-5ubuntu2_powerpc.deb ... Unpacking libblkid1:powerpc (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libblkid1:powerpc (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28-5ubuntu2_powerpc.deb ... Unpacking libfdisk1:powerpc (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:powerpc (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../perl_5.22.2-2_powerpc.deb ... Unpacking perl (5.22.2-2) over (5.22.1-9) ... Preparing to unpack .../perl-modules-5.22_5.22.2-2_all.deb ... Unpacking perl-modules-5.22 (5.22.2-2) over (5.22.1-9) ... Preparing to unpack .../libperl5.22_5.22.2-2_powerpc.deb ... Unpacking libperl5.22:powerpc (5.22.2-2) over (5.22.1-9) ... Preparing to unpack .../perl-base_5.22.2-2_powerpc.deb ... Unpacking perl-base (5.22.2-2) over (5.22.1-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-base (5.22.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12_powerpc.deb ... Unpacking libdb5.3:powerpc (5.3.28-12) over (5.3.28-11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdb5.3:powerpc (5.3.28-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_powerpc.deb ... Unpacking libgdbm3:powerpc (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_powerpc.deb ... Unpacking zlib1g:powerpc (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:powerpc (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11959 files and directories currently installed.) Preparing to unpack .../insserv_1.14.0-5.3ubuntu1_powerpc.deb ... Unpacking insserv (1.14.0-5.3ubuntu1) over (1.14.0-5ubuntu3) ... Setting up insserv (1.14.0-5.3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11960 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.39_all.deb ... Unpacking init-system-helpers (1.39) over (1.29ubuntu1) ... Setting up init-system-helpers (1.39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11962 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.8git1_powerpc.deb ... Unpacking sysvinit-utils (2.88dsf-59.8git1) over (2.88dsf-59.3ubuntu2) ... Replacing files in old package initscripts (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28-5ubuntu2_powerpc.deb ... Unpacking util-linux (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28-5ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11965 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_powerpc.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11968 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160625-1ubuntu1_powerpc.deb ... Unpacking ncurses-bin (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7.1_powerpc.deb ... Unpacking sed (4.2.2-7.1) over (4.2.2-7) ... Setting up sed (4.2.2-7.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../archives/init_1.39_powerpc.deb ... Unpacking init (1.39) over (1.29ubuntu1) ... Setting up init (1.39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libc-bin_2.23-1ubuntu1_powerpc.deb ... Unpacking libc-bin (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc-bin (2.23-1ubuntu1) ... Updating /etc/nsswitch.conf to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20160625-1ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-base (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_powerpc.deb ... Unpacking liblzma5:powerpc (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up liblzma5:powerpc (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-10ubuntu11_powerpc.deb ... Unpacking libstdc++6:powerpc (6.1.1-10ubuntu11) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libstdc++6:powerpc (6.1.1-10ubuntu11) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2_powerpc.deb ... Unpacking libgcrypt20:powerpc (1.7.2-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgcrypt20:powerpc (1.7.2-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_powerpc.deb ... Unpacking libcap2:powerpc (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcap2:powerpc (1:2.25-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libudev1_230-7_powerpc.deb ... Unpacking libudev1:powerpc (230-7) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libudev1:powerpc (230-7) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_powerpc.deb ... Unpacking libdevmapper1.02.1:powerpc (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_powerpc.deb ... Unpacking libcryptsetup4:powerpc (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcryptsetup4:powerpc (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_powerpc.deb ... Unpacking libidn11:powerpc (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libidn11:powerpc (1.33-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_powerpc.deb ... Unpacking libkmod2:powerpc (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libkmod2:powerpc (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_powerpc.deb ... Unpacking libmount1:powerpc (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libmount1:powerpc (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_powerpc.deb ... Unpacking libseccomp2:powerpc (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libseccomp2:powerpc (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11967 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_powerpc.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11968 files and directories currently installed.) Preparing to unpack .../libsystemd0_230-7_powerpc.deb ... Unpacking libsystemd0:powerpc (230-7) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libsystemd0:powerpc (230-7) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11968 files and directories currently installed.) Preparing to unpack .../systemd_230-7_powerpc.deb ... Unpacking systemd (230-7) over (229-4ubuntu4) ... Setting up systemd (230-7) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../systemd-sysv_230-7_powerpc.deb ... Unpacking systemd-sysv (230-7) over (229-4ubuntu4) ... Setting up systemd-sysv (230-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.1-1_powerpc.deb ... Unpacking libcomerr2:powerpc (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcomerr2:powerpc (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.213ubuntu1_powerpc.deb ... Unpacking libdebconfclient0:powerpc (0.213ubuntu1) over (0.198ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdebconfclient0:powerpc (0.213ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160625-1ubuntu1_powerpc.deb ... Unpacking libncurses5:powerpc (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20160625-1ubuntu1_powerpc.deb ... Unpacking libtinfo5:powerpc (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libtinfo5:powerpc (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160625-1ubuntu1_powerpc.deb ... Unpacking libncursesw5:powerpc (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libncursesw5:powerpc (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_powerpc.deb ... Unpacking libss2:powerpc (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libss2:powerpc (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu5_all.deb ... Unpacking lsb-base (9.20160110ubuntu5) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.23-1ubuntu1_powerpc.deb ... Unpacking multiarch-support (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up multiarch-support (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_powerpc.deb ... Unpacking libusb-0.1-4:powerpc (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libusb-0.1-4:powerpc (2:0.1.12-30) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Selecting previously unselected package libprocps6:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-1ubuntu2_powerpc.deb ... Unpacking libprocps6:powerpc (2:3.3.12-1ubuntu2) ... Preparing to unpack .../procps_2%3a3.3.12-1ubuntu2_powerpc.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-1ubuntu2) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016f-1_all.deb ... 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Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-2) ... Setting up libgdbm3:powerpc (1.8.3-14) ... Setting up libperl5.22:powerpc (5.22.2-2) ... Setting up perl (5.22.2-2) ... Setting up sysvinit-utils (2.88dsf-59.8git1) ... Setting up libncurses5:powerpc (6.0+20160625-1ubuntu1) ... Setting up libprocps6:powerpc (2:3.3.12-1ubuntu2) ... Setting up procps (2:3.3.12-1ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 25 20:37:59 UTC 2016. Universal Time is now: Mon Jul 25 20:37:59 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.130-1ubuntu1) ... Setting up libslang2:powerpc (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:powerpc (3.13.0-1) ... Setting up libssl1.0.0:powerpc (1.0.2g-1ubuntu5) ... Setting up libgmp10:powerpc (2:6.1.1+dfsg-1) ... Setting up libtasn1-6:powerpc (4.8-1) ... Setting up libgnutls30:powerpc (3.4.14-1ubuntu1) ... Setting up libkrb5support0:powerpc (1.14.2+dfsg-1ubuntu1) ... Setting up libk5crypto3:powerpc (1.14.2+dfsg-1ubuntu1) ... Setting up libkrb5-3:powerpc (1.14.2+dfsg-1ubuntu1) ... Setting up libgssapi-krb5-2:powerpc (1.14.2+dfsg-1ubuntu1) ... Setting up libsasl2-modules-db:powerpc (2.1.26.dfsg1-15) ... Setting up libsasl2-2:powerpc (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu4) ... Setting up librtmp1:powerpc (2.4+20151223.gitfa8646d.1-1) ... Setting up libcurl3-gnutls:powerpc (7.47.0-1ubuntu3) ... Setting up apt-transport-https (1.3~exp1) ... Setting up libpng16-16:powerpc (1.6.23-1) ... Setting up openssl (1.0.2g-1ubuntu5) ... Setting up binutils (2.26.1-1ubuntu2) ... Setting up libgomp1:powerpc (6.1.1-10ubuntu11) ... Setting up libatomic1:powerpc (6.1.1-10ubuntu11) ... Setting up gcc-5-base:powerpc (5.4.0-6ubuntu1) ... Setting up libasan2:powerpc (5.4.0-6ubuntu1) ... Setting up libubsan0:powerpc (6.1.1-10ubuntu11) ... Setting up libisl15:powerpc (0.17.1-1) ... Setting up libmpfr4:powerpc (3.1.4-2) ... Setting up cpp-5 (5.4.0-6ubuntu1) ... Setting up libcc1-0:powerpc (6.1.1-10ubuntu11) ... Setting up libgcc-5-dev:powerpc (5.4.0-6ubuntu1) ... Setting up gcc-5 (5.4.0-6ubuntu1) ... Setting up libstdc++-5-dev:powerpc (5.4.0-6ubuntu1) ... Setting up g++-5 (5.4.0-6ubuntu1) ... Setting up libdpkg-perl (1.18.9ubuntu2) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.9ubuntu2) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (230-7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10203156', 'powerpc', 'yakkety', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=yakkety', '--purge=never', '--nolog', 'bcftools_1.3.1-1.dsc'] Initiating build PACKAGEBUILD-10203156 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 4.4.0-31-powerpc64-smp #50~14.04.1-Ubuntu SMP Wed Jul 13 01:32:29 UTC 2016 ppc sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on denneed03.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ bcftools 1.3.1-1 (powerpc) 25 Jul 2016 16:38 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: bcftools Version: 1.3.1-1 Source Version: 1.3.1-1 Distribution: yakkety Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/bcftools-Lbt5f7/bcftools-1.3.1' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/bcftools-Lbt5f7' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10203156/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── bcftools_1.3.1-1.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-DZstPT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ Packages [529 B] Fetched 2856 B in 0s (213 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-DZstPT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12006 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev, libhts-dev (>= 1.3.1), libgsl-dev, tabix, libio-pty-perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev, libhts-dev (>= 1.3.1), libgsl-dev, tabix, libio-pty-perl dpkg-deb: building package 'sbuild-build-depends-bcftools-dummy' in '/«BUILDDIR»/resolver-TrqEHW/apt_archive/sbuild-build-depends-bcftools-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ Sources [452 B] Get:5 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ Packages [718 B] Fetched 3289 B in 0s (263 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install bcftools build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl2 libhts-dev libhts1 libicu57 libio-pty-perl libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf tabix zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl2 libhts-dev libhts1 libicu57 libio-pty-perl libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-bcftools-dummy tabix zlib1g-dev 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After this operation, 76.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-bcftools-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-TrqEHW/apt_archive ./ sbuild-build-depends-bcftools-dummy 0.invalid.0 [964 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc groff-base powerpc 1.22.3-8 [1194 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main powerpc bsdmainutils powerpc 9.0.6ubuntu3 [172 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main powerpc libmagic1 powerpc 1:5.25-2ubuntu1 [214 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc file powerpc 1:5.25-2ubuntu1 [21.1 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main powerpc libasprintf0v5 powerpc 0.19.7-2ubuntu3 [6592 B] Get:10 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext-base powerpc 0.19.7-2ubuntu3 [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main powerpc libglib2.0-0 powerpc 2.49.2-2 [969 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main powerpc libicu57 powerpc 57.1-1 [7481 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxml2 powerpc 2.9.3+dfsg1-1.2 [573 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsigsegv2 powerpc 2.10-5 [13.6 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main powerpc autoconf all 2.69-9 [321 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main powerpc autotools-dev all 20150820.1 [39.8 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main powerpc automake all 1:1.15-4ubuntu1 [510 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main powerpc autopoint all 0.19.7-2ubuntu3 [406 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcroco3 powerpc 0.6.11-1 [69.3 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext powerpc 0.19.7-2ubuntu3 [1013 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc po-debconf all 1.0.19 [234 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main powerpc libarchive-zip-perl all 1.57-1 [84.0 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfile-stripnondeterminism-perl all 0.022-1 [11.7 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-strip-nondeterminism all 0.022-1 [4856 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtool all 2.4.6-0.1 [193 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-autoreconf all 12 [15.8 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main powerpc debhelper all 9.20160709ubuntu1 [707 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgsl2 powerpc 2.1+dfsg-2 [780 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgsl-dev powerpc 2.1+dfsg-2 [882 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/universe powerpc libhts1 powerpc 1.3.1-1ubuntu1 [232 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/universe powerpc libhts-dev powerpc 1.3.1-1ubuntu1 [294 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main powerpc libio-pty-perl powerpc 1:1.08-1.1build1 [30.0 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/universe powerpc tabix powerpc 1.3.1-1ubuntu1 [222 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main powerpc zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu5 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.3 MB in 19s (958 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12006 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-8_powerpc.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_powerpc.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.4.1-2_powerpc.deb ... Unpacking libpipeline1:powerpc (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_powerpc.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:powerpc. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_powerpc.deb ... Unpacking libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:powerpc. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:powerpc. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_powerpc.deb ... Unpacking libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. 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Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ... Unpacking libarchive-zip-perl (1.57-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.022-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.022-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.022-1_all.deb ... Unpacking dh-strip-nondeterminism (0.022-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-0.1_all.deb ... Unpacking libtool (2.4.6-0.1) ... 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Selecting previously unselected package libio-pty-perl. Preparing to unpack .../libio-pty-perl_1%3a1.08-1.1build1_powerpc.deb ... Unpacking libio-pty-perl (1:1.08-1.1build1) ... Selecting previously unselected package tabix. Preparing to unpack .../tabix_1.3.1-1ubuntu1_powerpc.deb ... Unpacking tabix (1.3.1-1ubuntu1) ... Selecting previously unselected package zlib1g-dev:powerpc. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_powerpc.deb ... Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package sbuild-build-depends-bcftools-dummy. Preparing to unpack .../sbuild-build-depends-bcftools-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-bcftools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up groff-base (1.22.3-8) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up libmagic1:powerpc (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:powerpc (2.49.2-2) ... No schema files found: doing nothing. Setting up libicu57:powerpc (57.1-1) ... Setting up libxml2:powerpc (2.9.3+dfsg1-1.2) ... Setting up libsigsegv2:powerpc (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:powerpc (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.022-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libgsl2:powerpc (2.1+dfsg-2) ... Setting up libgsl-dev (2.1+dfsg-2) ... Setting up libhts1:powerpc (1.3.1-1ubuntu1) ... Setting up libhts-dev:powerpc (1.3.1-1ubuntu1) ... Setting up libio-pty-perl (1:1.08-1.1build1) ... Setting up tabix (1.3.1-1ubuntu1) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu5) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up sbuild-build-depends-bcftools-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.022-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.4.0-31-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.26.1-1ubuntu2 dpkg-dev_1.18.9ubuntu2 g++-5_5.4.0-6ubuntu1 gcc-5_5.4.0-6ubuntu1 libc6-dev_2.23-1ubuntu1 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++6_6.1.1-10ubuntu11 linux-libc-dev_4.4.0-31.50 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp1 apt-transport-https_1.3~exp1 autoconf_2.69-9 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.4.0-6ubuntu1 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.9ubuntu2 dpkg-dev_1.18.9ubuntu2 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:5.3.1-1ubuntu1 g++-5_5.4.0-6ubuntu1 gcc_4:5.3.1-1ubuntu1 gcc-5_5.4.0-6ubuntu1 gcc-5-base_5.4.0-6ubuntu1 gcc-6-base_6.1.1-10ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.39 init-system-helpers_1.39 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5.3ubuntu1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.3~exp1 libarchive-zip-perl_1.57-1 libasan2_5.4.0-6ubuntu1 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-10ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.28-5ubuntu2 libbz2-1.0_1.0.6-8build1 libc-bin_2.23-1ubuntu1 libc-dev-bin_2.23-1ubuntu1 libc6_2.23-1ubuntu1 libc6-dev_2.23-1ubuntu1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-10ubuntu11 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.47.0-1ubuntu3 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.9ubuntu2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libgcc-5-dev_5.4.0-6ubuntu1 libgcc1_1:6.1.1-10ubuntu11 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.14-1ubuntu1 libgomp1_6.1.1-10ubuntu11 libgpg-error0_1.24-1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhts-dev_1.3.1-1ubuntu1 libhts1_1.3.1-1ubuntu1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-1 libidn11_1.33-1 libio-pty-perl_1:1.08-1.1build1 libisl15_0.17.1-1 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.25-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-2 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.23-1 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu5 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++6_6.1.1-10ubuntu11 libsystemd0_230-7 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-10ubuntu11 libudev1_230-7 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_4.4.0-31.50 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu2 multiarch-support_2.23-1ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu5 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-bcftools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_230-7 systemd-sysv_230-7 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tabix_1.3.1-1ubuntu1 tar_1.29b-1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue Apr 26 05:26:43 2016 UTC using RSA key ID AFE826FB gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bcftools_1.3.1-1.dsc dpkg-source: info: extracting bcftools in bcftools-1.3.1 dpkg-source: info: unpacking bcftools_1.3.1.orig.tar.gz dpkg-source: info: unpacking bcftools_1.3.1-1.debian.tar.xz dpkg-source: info: applying external-libs.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying tests-pluginpath.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package bcftools dpkg-buildpackage: info: source version 1.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build bcftools-1.3.1 dpkg-buildpackage: info: host architecture powerpc fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel make -j8 distclean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f test/*.o test/*~ test/test-rbuf rm -f plugins/*.so plugins/*.P rm -rf plugins/*.dSYM rm -f gmon.out *.o *~ bcftools version.h plugins/*.so plugins/*.P rm -rf *.dSYM plugins/*.dSYM test/*.dSYM rm -f TAGS make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_auto_configure -a -O--parallel dh_auto_build -a -O--parallel make -j8 make[1]: Entering directory '/«PKGBUILDDIR»' echo '#define BCFTOOLS_VERSION "1.3.1"' > version.h cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfindex.o vcfindex.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfstats.o vcfstats.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfisec.o vcfisec.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfmerge.o vcfmerge.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfquery.o vcfquery.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcffilter.o vcffilter.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filter.o filter.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfsom.o vcfsom.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfnorm.o vcfnorm.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfgtcheck.o vcfgtcheck.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfview.o vcfview.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfannotate.o vcfannotate.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfroh.o vcfroh.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfconcat.o vcfconcat.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfcall.o vcfcall.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcall.o mcall.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcmp.o vcmp.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gvcf.o gvcf.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reheader.o reheader.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convert.o convert.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfconvert.o vcfconvert.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tsv2vcf.o tsv2vcf.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfcnv.o vcfcnv.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o HMM.o HMM.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfplugin.o vcfplugin.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus.o consensus.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ploidy.o ploidy.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o version.o version.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ccall.o ccall.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o em.o em.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prob1.o prob1.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmin.o kmin.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o polysomy.o polysomy.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peakfit.o peakfit.c cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-rbuf.o test/test-rbuf.c cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/setGT.so version.c plugins/setGT.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/tag2tag.so version.c plugins/tag2tag.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/fixploidy.so ploidy.c version.c plugins/fixploidy.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/frameshifts.so version.c plugins/frameshifts.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/vcf2sex.so ploidy.c version.c plugins/vcf2sex.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/fill-tags.so version.c plugins/fill-tags.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/counts.so version.c plugins/counts.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/mendelian.so version.c plugins/mendelian.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/missing2ref.so version.c plugins/missing2ref.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/GTisec.so version.c plugins/GTisec.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/dosage.so version.c plugins/dosage.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/impute-info.so version.c plugins/impute-info.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -I. -I/usr/include -DPLUGINPATH=\"/usr/lib/powerpc-linux-gnu/bcftools\" -DUSE_GPL -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -o test/test-rbuf test/test-rbuf.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts cc -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o HMM.o vcfplugin.o consensus.o ploidy.o version.o ccall.o em.o prob1.o kmin.o polysomy.o peakfit.o -lpthread -lz -lm -ldl -lgsl -lgslcblas -Wl,-Bsymbolic-functions -Wl,-z,relro -lhts make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -a -O--parallel make -j8 test make[1]: Entering directory '/«PKGBUILDDIR»' ./test/test.pl --exec bgzip=/usr/bin/bgzip --exec tabix=/usr/bin/tabix test_usage: bcftools .. ok test_usage_subcommand: bcftools index .. ok test_usage_subcommand: bcftools annotate .. ok test_usage_subcommand: bcftools concat .. ok test_usage_subcommand: bcftools convert .. ok test_usage_subcommand: bcftools isec .. ok test_usage_subcommand: bcftools merge .. ok test_usage_subcommand: bcftools norm .. ok test_usage_subcommand: bcftools plugin .. ok test_usage_subcommand: bcftools query .. ok test_usage_subcommand: bcftools reheader .. ok test_usage_subcommand: bcftools view .. ok test_usage_subcommand: bcftools call .. ok test_usage_subcommand: bcftools consensus .. ok test_usage_subcommand: bcftools cnv .. ok test_usage_subcommand: bcftools filter .. ok test_usage_subcommand: bcftools gtcheck .. ok test_usage_subcommand: bcftools polysomy .. ok test_usage_subcommand: bcftools roh .. ok test_usage_subcommand: bcftools stats .. ok test_tabix: /usr/bin/tabix /tmp/DWp_44gDbJ/merge.a.vcf.gz 2:3199812-3199812 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/merge.a.bcf 2:3199812-3199812 .. ok test_tabix: /usr/bin/tabix /tmp/DWp_44gDbJ/merge.a.vcf.gz 1:3000151-3000151 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/merge.a.bcf 1:3000151-3000151 .. ok test_tabix: /usr/bin/tabix /tmp/DWp_44gDbJ/large_chrom_tbi_limit.vcf.gz chr11:1-536870912 .. ok test_tabix: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/large_chrom_tbi_limit.bcf chr11:1-536870912 .. ok test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/large_chrom_csi_limit.vcf.gz chr20:1-2147483647 The outputs differ: /«PKGBUILDDIR»/test/large_chrom_csi_limit.20.1.2147483647.out /«PKGBUILDDIR»/test/large_chrom_csi_limit.20.1.2147483647.out.new .. failed ... test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/large_chrom_csi_limit.bcf chr20:1-2147483647 .. ok test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/large_chrom_csi_limit.vcf.gz chr20 The outputs differ: /«PKGBUILDDIR»/test/large_chrom.20.1.2147483647.out /«PKGBUILDDIR»/test/large_chrom.20.1.2147483647.out.new .. failed ... test_index: /«PKGBUILDDIR»/bcftools view -H /tmp/DWp_44gDbJ/large_chrom_csi_limit.bcf chr20 .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/idx.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/idx.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/idx.out /«PKGBUILDDIR»/test/idx.out.new .. failed ... test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/idx.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/idx.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/idx.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/idx_count.out /«PKGBUILDDIR»/test/idx_count.out.new .. failed ... test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/idx.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -s /tmp/DWp_44gDbJ/empty.bcf .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/empty.vcf.gz .. ok test_vcf_idxstats: /«PKGBUILDDIR»/bcftools index -n /tmp/DWp_44gDbJ/empty.bcf .. ok test_vcf_check: /«PKGBUILDDIR»/bcftools stats -s - /tmp/DWp_44gDbJ/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' .. ok test_vcf_check: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' .. ok test_vcf_check_merge: /«PKGBUILDDIR»/plot-vcfstats -m /tmp/DWp_44gDbJ/check.1.chk /tmp/DWp_44gDbJ/check.2.chk /tmp/DWp_44gDbJ/check.3.chk /tmp/DWp_44gDbJ/check.4.chk 2>/dev/null | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' .. ok test_vcf_stats: /«PKGBUILDDIR»/bcftools stats -s - /tmp/DWp_44gDbJ/stats.a.vcf.gz /tmp/DWp_44gDbJ/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID ' .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -i"STRLEN(REF)==2" /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -c both /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -c both /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -n =2 -c any /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -n =2 -c any /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -C -c any /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec: /«PKGBUILDDIR»/bcftools isec -Ob -C -c any /tmp/DWp_44gDbJ/isec.a.vcf.gz /tmp/DWp_44gDbJ/isec.b.vcf.gz 2>/dev/null .. ok test_vcf_isec2: /«PKGBUILDDIR»/bcftools isec --no-version -T /tmp/DWp_44gDbJ/isec.tab.gz /tmp/DWp_44gDbJ/isec.a.vcf.gz 2>/dev/null .. ok test_vcf_isec2: /«PKGBUILDDIR»/bcftools isec -Ob -T /tmp/DWp_44gDbJ/isec.tab.gz /tmp/DWp_44gDbJ/isec.a.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples /tmp/DWp_44gDbJ/merge.a.vcf.gz /tmp/DWp_44gDbJ/merge.b.vcf.gz /tmp/DWp_44gDbJ/merge.c.vcf.gz .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples /tmp/DWp_44gDbJ/merge.a.vcf.gz /tmp/DWp_44gDbJ/merge.b.vcf.gz /tmp/DWp_44gDbJ/merge.c.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples -m none /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m none /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples -m both /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m both /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples -m all /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m all /tmp/DWp_44gDbJ/merge.2.a.vcf.gz /tmp/DWp_44gDbJ/merge.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/DWp_44gDbJ/merge.3.a.vcf.gz /tmp/DWp_44gDbJ/merge.3.b.vcf.gz .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/DWp_44gDbJ/merge.3.a.vcf.gz /tmp/DWp_44gDbJ/merge.3.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_merge: /«PKGBUILDDIR»/bcftools merge --no-version --force-samples -m id /tmp/DWp_44gDbJ/merge.4.a.vcf.gz /tmp/DWp_44gDbJ/merge.4.b.vcf.gz The outputs differ: /«PKGBUILDDIR»/test/merge.4.out /«PKGBUILDDIR»/test/merge.4.out.new .. failed ... test_vcf_merge: /«PKGBUILDDIR»/bcftools merge -Ob --force-samples -m id /tmp/DWp_44gDbJ/merge.4.a.vcf.gz /tmp/DWp_44gDbJ/merge.4.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ The outputs differ: /«PKGBUILDDIR»/test/merge.4.out /«PKGBUILDDIR»/test/merge.4.out.new .. failed ... test_vcf_query: /«PKGBUILDDIR»/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XRI\n' -i'XRI[*]>1111' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[3]!~"H"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[3]!~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"HI,JK"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XGS\n' -i'XGS[*]~"HI,JK"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT~"CT"' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT~"CT"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[0]))=10' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[0]))=10' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/DWp_44gDbJ/query.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/DWp_44gDbJ/view.vectors.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT ="1"' /tmp/DWp_44gDbJ/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT ="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT!="1"' /tmp/DWp_44gDbJ/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -i'GT!="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT ="1"' /tmp/DWp_44gDbJ/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT ="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT!="1"' /tmp/DWp_44gDbJ/query.filter.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.filter.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%POS[ %GT]\n' -e'GT!="1"' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/DWp_44gDbJ/query.2.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/query.2.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'IINT="."' -f'%POS %IINT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'IINT="."' -f'%POS %IINT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'IINT!="."' -f'%POS %IINT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'IINT!="."' -f'%POS %IINT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'IINT="."' -f'%POS %IINT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'IINT="."' -f'%POS %IINT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'IFLT="."' -f'%POS %IFLT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'IFLT="."' -f'%POS %IFLT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'IFLT="."' -f'%POS %IFLT\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'IFLT="."' -f'%POS %IFLT\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'ISTR="."' -f'%POS %ISTR\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'ISTR="."' -f'%POS %ISTR\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'ISTR="."' -f'%POS %ISTR\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'ISTR="."' -f'%POS %ISTR\n' .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/DWp_44gDbJ/missing.vcf.gz .. ok test_vcf_query: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/missing.vcf.gz | /«PKGBUILDDIR»/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m- /tmp/DWp_44gDbJ/norm.split.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m- /tmp/DWp_44gDbJ/norm.split.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m- /tmp/DWp_44gDbJ/norm.split.2.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m- /tmp/DWp_44gDbJ/norm.split.2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m- -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.split.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m- -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.split.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m+ /tmp/DWp_44gDbJ/norm.merge.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ /tmp/DWp_44gDbJ/norm.merge.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m+ /tmp/DWp_44gDbJ/norm.merge.2.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ /tmp/DWp_44gDbJ/norm.merge.2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m+ /tmp/DWp_44gDbJ/norm.merge.3.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ /tmp/DWp_44gDbJ/norm.merge.3.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -m+ -s /tmp/DWp_44gDbJ/norm.merge.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -m+ -s /tmp/DWp_44gDbJ/norm.merge.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -Nc s -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.setref.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -Nc s -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.setref.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm --no-version -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.telomere.vcf.gz 2>/dev/null .. ok test_vcf_norm: /«PKGBUILDDIR»/bcftools norm -Ob -f /«PKGBUILDDIR»/test/norm.fa /tmp/DWp_44gDbJ/norm.telomere.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -f PASS -Xks NA00003 /tmp/DWp_44gDbJ/view.vcf.gz -r20,Y .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -f PASS -Xks NA00003 /tmp/DWp_44gDbJ/view.vcf.gz -r20,Y | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -xs NA00003 /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -xs NA00003 /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -p /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -p /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -P /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -P /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -Hu /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -GVsnps /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -GVsnps /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -s ^NA00003 /tmp/DWp_44gDbJ/view.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -s ^NA00003 /tmp/DWp_44gDbJ/view.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version /tmp/DWp_44gDbJ/view.omitgenotypes.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/view.omitgenotypes.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -G /tmp/DWp_44gDbJ/view.omitgenotypes.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -G /tmp/DWp_44gDbJ/view.omitgenotypes.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -HG /tmp/DWp_44gDbJ/view.omitgenotypes.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -a /tmp/DWp_44gDbJ/many.alleles.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -a /tmp/DWp_44gDbJ/many.alleles.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -asA /tmp/DWp_44gDbJ/view.vectors.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -asA /tmp/DWp_44gDbJ/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -asB /tmp/DWp_44gDbJ/view.vectors.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -asB /tmp/DWp_44gDbJ/view.vectors.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i'FMT/FGS[0]="AAAAAA"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i'FMT/FGS[2]="C"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i'FMT/FGS[4]="EE"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i'FMT/FRS[1]="BB"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i'TXT0="text"' /tmp/DWp_44gDbJ/view.filter.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -T /«PKGBUILDDIR»/test/view.chrs.tab /tmp/DWp_44gDbJ/view.chrs.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -T /«PKGBUILDDIR»/test/view.chrs.tab /tmp/DWp_44gDbJ/view.chrs.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -i 'POS>=3062917' /tmp/DWp_44gDbJ/filter.2.vcf.gz 1:3062917-3157410 .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view -Ob -i 'POS>=3062917' /tmp/DWp_44gDbJ/filter.2.vcf.gz 1:3062917-3157410 | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'TXT0="text"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'TXT0="text"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FRS[1]="BB"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FRS[1]="BB"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[0]="AAAAAA"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[0]="AAAAAA"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[1]="BBB"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[1]="BBB"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/FGS[4]="EE"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/FGS[4]="EE"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S. -e'FMT/STR="XX"' /«PKGBUILDDIR»/test/view.filter.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S. -e'FMT/STR="XX"' /«PKGBUILDDIR»/test/view.filter.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -C5:nonmajor /tmp/DWp_44gDbJ/view.minmaxac.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -c6:nonmajor /tmp/DWp_44gDbJ/view.minmaxac.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -q0.3:major /tmp/DWp_44gDbJ/view.minmaxac.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/DWp_44gDbJ/view.filter.annovar.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/DWp_44gDbJ/view.filter.annovar.vcf.gz .. ok test_vcf_view: /«PKGBUILDDIR»/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/DWp_44gDbJ/view.filter.annovar.vcf.gz .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -mv /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mv /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -mg0 /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mg0 /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -mv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.samples /«PKGBUILDDIR»/test/mpileup.X.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.samples /«PKGBUILDDIR»/test/mpileup.X.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -mv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.ped /«PKGBUILDDIR»/test/mpileup.X.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -mv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.ped /«PKGBUILDDIR»/test/mpileup.X.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call_cAls: /«PKGBUILDDIR»/bcftools call --no-version -mA -C alleles -T /tmp/DWp_44gDbJ/mpileup.tab.gz /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null .. ok test_vcf_call_cAls: /«PKGBUILDDIR»/bcftools call -Ob -mA -C alleles -T /tmp/DWp_44gDbJ/mpileup.tab.gz /«PKGBUILDDIR»/test/mpileup.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -cv /«PKGBUILDDIR»/test/mpileup.c.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -cv /«PKGBUILDDIR»/test/mpileup.c.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -cv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.samples /«PKGBUILDDIR»/test/mpileup.c.X.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -cv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.samples /«PKGBUILDDIR»/test/mpileup.c.X.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call --no-version -cv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.ped /«PKGBUILDDIR»/test/mpileup.c.X.vcf 2>/dev/null .. ok test_vcf_call: /«PKGBUILDDIR»/bcftools call -Ob -cv --ploidy-file /«PKGBUILDDIR»/test/mpileup.ploidy -S /«PKGBUILDDIR»/test/mpileup.ped /«PKGBUILDDIR»/test/mpileup.c.X.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -mx -g2 -G2 /«PKGBUILDDIR»/test/filter.1.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -mx -g2 -G2 /«PKGBUILDDIR»/test/filter.1.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /«PKGBUILDDIR»/test/filter.2.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'DP=19' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'DP=19' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /«PKGBUILDDIR»/test/filter.3.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -i'ALT="."' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -i'ALT="."' /«PKGBUILDDIR»/test/filter.2.vcf | /«PKGBUILDDIR»/bcftools view | /«PKGBUILDDIR»/bcftools query -f '%POS\t%AC[\t%GT]\n' .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S . -i 'FORMAT/TEST3<25' /«PKGBUILDDIR»/test/filter.4.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /«PKGBUILDDIR»/test/filter.4.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -S . -i 'FORMAT/TEST4<25' /«PKGBUILDDIR»/test/filter.4.vcf | grep -v ^##bcftools_ .. ok test_vcf_filter: /«PKGBUILDDIR»/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /«PKGBUILDDIR»/test/filter.4.vcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /«PKGBUILDDIR»/test/regions.tab /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /«PKGBUILDDIR»/test/regions.tab .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /«PKGBUILDDIR»/test/regions.tab /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.tab.gz /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.tab.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/DWp_44gDbJ/regions.tab.gz /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.bed /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.bed .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/DWp_44gDbJ/regions.bed /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.bed.gz /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/regions.vcf.gz | /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/DWp_44gDbJ/regions.bed.gz .. ok test_vcf_regions: /«PKGBUILDDIR»/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/DWp_44gDbJ/regions.bed.gz /tmp/DWp_44gDbJ/regions.vcf.gz .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annotate.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /«PKGBUILDDIR»/test/annotate.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annotate.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /«PKGBUILDDIR»/test/annotate.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annotate2.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,FROM,TO,T_STR /«PKGBUILDDIR»/test/annotate.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annotate2.tab.gz -h /«PKGBUILDDIR»/test/annotate.hdr -c CHROM,FROM,TO,T_STR /«PKGBUILDDIR»/test/annotate.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/DWp_44gDbJ/annotate.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/DWp_44gDbJ/annotate.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/DWp_44gDbJ/annotate2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/DWp_44gDbJ/annotate2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/DWp_44gDbJ/annotate2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/DWp_44gDbJ/annotate2.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /«PKGBUILDDIR»/test/annotate3.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /«PKGBUILDDIR»/test/annotate3.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -x FORMAT /«PKGBUILDDIR»/test/annotate3.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -x FORMAT /«PKGBUILDDIR»/test/annotate3.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots4.vcf.gz -c +INFO /tmp/DWp_44gDbJ/annotate4.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots4.vcf.gz -c +INFO /tmp/DWp_44gDbJ/annotate4.vcf.gz 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots4.tab.gz -h /«PKGBUILDDIR»/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /«PKGBUILDDIR»/test/annotate4.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots4.tab.gz -h /«PKGBUILDDIR»/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /«PKGBUILDDIR»/test/annotate4.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots10.tab.gz -h /«PKGBUILDDIR»/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /«PKGBUILDDIR»/test/annotate10.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots10.tab.gz -h /«PKGBUILDDIR»/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /«PKGBUILDDIR»/test/annotate10.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -a /tmp/DWp_44gDbJ/annots9.tab.gz -c CHROM,POS,REF,ALT,+ID /«PKGBUILDDIR»/test/annotate9.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_annotate: /«PKGBUILDDIR»/bcftools annotate -Ob -a /tmp/DWp_44gDbJ/annots9.tab.gz -c CHROM,POS,REF,ALT,+ID /«PKGBUILDDIR»/test/annotate9.vcf 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version /tmp/DWp_44gDbJ/concat.1.a.vcf.gz /tmp/DWp_44gDbJ/concat.1.b.vcf.gz .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob /tmp/DWp_44gDbJ/concat.1.a.vcf.gz /tmp/DWp_44gDbJ/concat.1.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version /tmp/DWp_44gDbJ/concat.1.a.bcf /tmp/DWp_44gDbJ/concat.1.b.bcf .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob /tmp/DWp_44gDbJ/concat.1.a.bcf /tmp/DWp_44gDbJ/concat.1.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -a /tmp/DWp_44gDbJ/concat.2.a.vcf.gz /tmp/DWp_44gDbJ/concat.2.b.vcf.gz .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -a /tmp/DWp_44gDbJ/concat.2.a.vcf.gz /tmp/DWp_44gDbJ/concat.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -a /tmp/DWp_44gDbJ/concat.2.a.bcf /tmp/DWp_44gDbJ/concat.2.b.bcf .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -a /tmp/DWp_44gDbJ/concat.2.a.bcf /tmp/DWp_44gDbJ/concat.2.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -aD /tmp/DWp_44gDbJ/concat.2.a.vcf.gz /tmp/DWp_44gDbJ/concat.2.b.vcf.gz .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -aD /tmp/DWp_44gDbJ/concat.2.a.vcf.gz /tmp/DWp_44gDbJ/concat.2.b.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -aD /tmp/DWp_44gDbJ/concat.2.a.bcf /tmp/DWp_44gDbJ/concat.2.b.bcf .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -aD /tmp/DWp_44gDbJ/concat.2.a.bcf /tmp/DWp_44gDbJ/concat.2.b.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -l /tmp/DWp_44gDbJ/concat.3.a.vcf.gz /tmp/DWp_44gDbJ/concat.3.b.vcf.gz /tmp/DWp_44gDbJ/concat.3.0.vcf.gz /tmp/DWp_44gDbJ/concat.3.c.vcf.gz /tmp/DWp_44gDbJ/concat.3.d.vcf.gz /tmp/DWp_44gDbJ/concat.3.e.vcf.gz /tmp/DWp_44gDbJ/concat.3.f.vcf.gz .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -l /tmp/DWp_44gDbJ/concat.3.a.vcf.gz /tmp/DWp_44gDbJ/concat.3.b.vcf.gz /tmp/DWp_44gDbJ/concat.3.0.vcf.gz /tmp/DWp_44gDbJ/concat.3.c.vcf.gz /tmp/DWp_44gDbJ/concat.3.d.vcf.gz /tmp/DWp_44gDbJ/concat.3.e.vcf.gz /tmp/DWp_44gDbJ/concat.3.f.vcf.gz | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat --no-version -l /tmp/DWp_44gDbJ/concat.3.a.bcf /tmp/DWp_44gDbJ/concat.3.b.bcf /tmp/DWp_44gDbJ/concat.3.0.bcf /tmp/DWp_44gDbJ/concat.3.c.bcf /tmp/DWp_44gDbJ/concat.3.d.bcf /tmp/DWp_44gDbJ/concat.3.e.bcf /tmp/DWp_44gDbJ/concat.3.f.bcf .. ok test_vcf_concat: /«PKGBUILDDIR»/bcftools concat -Ob -l /tmp/DWp_44gDbJ/concat.3.a.bcf /tmp/DWp_44gDbJ/concat.3.b.bcf /tmp/DWp_44gDbJ/concat.3.0.bcf /tmp/DWp_44gDbJ/concat.3.c.bcf /tmp/DWp_44gDbJ/concat.3.d.bcf /tmp/DWp_44gDbJ/concat.3.e.bcf /tmp/DWp_44gDbJ/concat.3.f.bcf | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples2 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples3 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/reheader.vcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.bcf | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/reheader.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -s /«PKGBUILDDIR»/test/reheader.samples4 | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr /«PKGBUILDDIR»/test/empty.vcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /«PKGBUILDDIR»/test/empty.vcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr /tmp/DWp_44gDbJ/empty.bcf | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/empty.bcf | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr /tmp/DWp_44gDbJ/empty.vcf.gz | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_vcf_reheader: cat /tmp/DWp_44gDbJ/empty.vcf.gz | /«PKGBUILDDIR»/bcftools reheader -h /«PKGBUILDDIR»/test/reheader.empty.hdr | /«PKGBUILDDIR»/bcftools view --no-version .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/DWp_44gDbJ/rename.map -Ov /tmp/DWp_44gDbJ/annotate.bcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/DWp_44gDbJ/rename.map -Ob /tmp/DWp_44gDbJ/annotate.bcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/DWp_44gDbJ/rename.map -Ov /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_rename_chrs: /«PKGBUILDDIR»/bcftools annotate --rename-chrs /tmp/DWp_44gDbJ/rename.map -Ob /«PKGBUILDDIR»/test/annotate.vcf | /«PKGBUILDDIR»/bcftools query -f'%CHROM\t%POS\n' .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --tag PL /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --tag PL 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --tag PL /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --tag PL 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --vcf-ids /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --vcf-ids 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --vcf-ids /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --vcf-ids 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --chrom /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --chrom 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --chrom /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --chrom 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g -,. --chrom --vcf-ids /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g -,. --chrom --vcf-ids 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -g .,- --chrom --vcf-ids /tmp/DWp_44gDbJ/check.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/check.vcf.gz | /«PKGBUILDDIR»/bcftools convert -g .,- --chrom --vcf-ids 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h -,.,. /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h -,.,. 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h .,-,. /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h .,-,. 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert -h .,.,- /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert -h .,.,- 2>/dev/null .. ok test_vcf_convert_hls2vcf: /«PKGBUILDDIR»/bcftools convert -H /«PKGBUILDDIR»/test/convert.hls.gt.hap,/«PKGBUILDDIR»/test/convert.hls.gt.legend,/«PKGBUILDDIR»/test/convert.hls.gt.samples 2>/dev/null | grep -v ^## .. ok test_vcf_convert_hls2vcf: /«PKGBUILDDIR»/bcftools convert -H /«PKGBUILDDIR»/test/convert.hls.gt.hap,/«PKGBUILDDIR»/test/convert.hls.gt.legend,/«PKGBUILDDIR»/test/convert.hls.gt.samples -Ou 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^## .. ok test_vcf_convert_hs2vcf: /«PKGBUILDDIR»/bcftools convert --hapsample2vcf /«PKGBUILDDIR»/test/convert.hs.gt.hap,/«PKGBUILDDIR»/test/convert.hs.gt.samples 2>/dev/null | grep -v ^## .. ok test_vcf_convert_hs2vcf: /«PKGBUILDDIR»/bcftools convert --hapsample2vcf /«PKGBUILDDIR»/test/convert.hs.gt.hap,/«PKGBUILDDIR»/test/convert.hs.gt.samples -Ou 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^## .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert --hapsample -,. /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert --hapsample -,. 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools convert --hapsample .,- /tmp/DWp_44gDbJ/convert.vcf.gz 2>/dev/null .. ok test_vcf_convert: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.vcf.gz | /«PKGBUILDDIR»/bcftools convert --hapsample .,- 2>/dev/null .. ok test_vcf_convert_gvcf: /«PKGBUILDDIR»/bcftools convert --no-version --gvcf2vcf -f /«PKGBUILDDIR»/test/gvcf.fa /tmp/DWp_44gDbJ/convert.gvcf.vcf.gz 2>/dev/null .. ok test_vcf_convert_gvcf: /«PKGBUILDDIR»/bcftools view -Ob /tmp/DWp_44gDbJ/convert.gvcf.vcf.gz | /«PKGBUILDDIR»/bcftools convert --gvcf2vcf -f /«PKGBUILDDIR»/test/gvcf.fa 2>/dev/null | grep -v ^##bcftools .. ok test_vcf_convert_tsv2vcf: /«PKGBUILDDIR»/bcftools convert --no-version -c ID,CHROM,POS,AA -s SAMPLE1 -f /«PKGBUILDDIR»/test/23andme.fa --tsv2vcf /«PKGBUILDDIR»/test/convert.23andme 2>/dev/null .. ok test_vcf_convert_tsv2vcf: /«PKGBUILDDIR»/bcftools convert -Ou -c ID,CHROM,POS,AA -s SAMPLE1 -f /«PKGBUILDDIR»/test/23andme.fa --tsv2vcf /«PKGBUILDDIR»/test/convert.23andme 2>/dev/null | /«PKGBUILDDIR»/bcftools view | grep -v ^##bcftools_ .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -m /«PKGBUILDDIR»/test/consensus.tab 2>/dev/null .. ok test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/DWp_44gDbJ/consensus.1.chain.new > /dev/null 2>/dev/null; cat /tmp/DWp_44gDbJ/consensus.1.chain.new .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -m /«PKGBUILDDIR»/test/consensus.tab 2>/dev/null .. ok test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/DWp_44gDbJ/consensus.2.chain.new > /dev/null 2>/dev/null; cat /tmp/DWp_44gDbJ/consensus.2.chain.new .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -i -m /«PKGBUILDDIR»/test/consensus.tab 2>/dev/null .. ok test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -i -m /«PKGBUILDDIR»/test/consensus.tab -c /tmp/DWp_44gDbJ/consensus.3.chain.new > /dev/null 2>/dev/null; cat /tmp/DWp_44gDbJ/consensus.3.chain.new .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 2>/dev/null .. ok test_vcf_consensus_chain: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa -H 1 -c /tmp/DWp_44gDbJ/consensus.4.chain.new > /dev/null 2>/dev/null; cat /tmp/DWp_44gDbJ/consensus.4.chain.new .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus2.vcf.gz -f /«PKGBUILDDIR»/test/consensus2.fa -H 1 2>/dev/null .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/consensus2.vcf.gz -f /«PKGBUILDDIR»/test/consensus2.fa -H 2 2>/dev/null .. ok test_vcf_consensus: /«PKGBUILDDIR»/bcftools consensus /tmp/DWp_44gDbJ/empty.vcf.gz -f /«PKGBUILDDIR»/test/consensus.fa 2>/dev/null .. ok Number of tests: total .. 410 passed .. 404 failed .. 6 Makefile:102: recipe for target 'test' failed make[1]: *** [test] Error 1 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test: make -j8 test returned exit code 2 make: *** [build-arch] Error 2 debian/rules:11: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160725-1639 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: powerpc Build-Space: 11640 Build-Time: 77 Distribution: yakkety Fail-Stage: build Host Architecture: powerpc Install-Time: 28 Job: bcftools_1.3.1-1.dsc Machine Architecture: powerpc Package: bcftools Package-Time: 107 Source-Version: 1.3.1-1 Space: 11640 Status: attempted Version: 1.3.1-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160725-1639 Build needed 00:01:47, 11640k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10203156'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10203156/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10203156'] Unmounting chroot for build PACKAGEBUILD-10203156... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10203156'] Removing build PACKAGEBUILD-10203156