RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-027 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:58:57 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_145 python-lpbuildd_145 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 15 Jul 21:09:53 ntpdate[1809]: adjust time server 10.211.37.1 offset 0.061308 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12964101', '/home/buildd/filecache-default/42e17d2fa25e748a1aa6eaeef2fe6722beaed5a9'] Unpacking chroot for build PACKAGEBUILD-12964101 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12964101'] Mounting chroot for build PACKAGEBUILD-12964101 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12964101', 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful main', 'deb http://ftpmaster.internal/ubuntu artful main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-12964101 RUN: /usr/share/launchpad-buildd/slavebin/add-trusted-keys ['add-trusted-keys', 'PACKAGEBUILD-12964101'] Adding trusted keys to build-PACKAGEBUILD-12964101 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12964101', 'armhf'] Updating debian chroot for build PACKAGEBUILD-12964101 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful InRelease [15.4 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf Packages [1100 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [557 kB] Get:7 http://ftpmaster.internal/ubuntu artful/restricted armhf Packages [5668 B] Get:8 http://ftpmaster.internal/ubuntu artful/restricted Translation-en [2724 B] Get:9 http://ftpmaster.internal/ubuntu artful/universe armhf Packages [8025 kB] Get:10 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4767 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf Packages [32.0 kB] Get:12 http://ftpmaster.internal/ubuntu artful/multiverse armhf Packages [131 kB] Get:13 http://ftpmaster.internal/ubuntu artful/multiverse Translation-en [109 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main Translation-en [19.8 kB] Fetched 15.1 MB in 6s (2377 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-6 libstdc++-6-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libcilkrts5 libgcc-7-dev libstdc++-7-dev The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils bsdutils ca-certificates cpp cpp-6 debianutils dmsetup dpkg dpkg-dev findutils g++ g++-6 gcc gcc-6 gcc-6-base grep libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libip4tc0 libk5crypto3 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmount1 libnpth0 libp11-kit0 libperl5.24 libpng16-16 libpsl5 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 sensible-utils systemd systemd-sysv tzdata util-linux 90 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB of archives. After this operation, 388 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf gcc-7-base armhf 7.1.0-9ubuntu1 [18.9 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main armhf base-files armhf 9.6ubuntu101 [59.1 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libgcc1 armhf 1:7.1.0-9ubuntu1 [38.4 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libstdc++6 armhf 7.1.0-9ubuntu1 [346 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf sensible-utils all 0.0.9+nmu1 [10.2 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main armhf debianutils armhf 4.8.1.1 [84.3 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main armhf bash armhf 4.4-5ubuntu1 [527 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf binutils armhf 2.28.90.20170704-0ubuntu1 [2658 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main armhf bsdutils armhf 1:2.29-1ubuntu3 [52.1 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main armhf dpkg armhf 1.18.24ubuntu1 [1099 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main armhf findutils armhf 4.6.0+git+20170606-3 [277 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main armhf grep armhf 3.1-2 [145 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main armhf login armhf 1:4.2-3.2ubuntu2 [301 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main armhf util-linux armhf 2.29-1ubuntu3 [861 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf cpp-7 armhf 7.1.0-9ubuntu1 [29.4 MB] Get:16 http://ftpmaster.internal/ubuntu artful/main armhf mount armhf 2.29-1ubuntu3 [124 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main armhf libperl5.24 armhf 5.24.1-7ubuntu1 [2794 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main armhf perl armhf 5.24.1-7ubuntu1 [219 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main armhf perl-base armhf 5.24.1-7ubuntu1 [1239 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main armhf perl-modules-5.24 all 5.24.1-7ubuntu1 [2664 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main armhf libdb5.3 armhf 5.3.28-13 [589 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main armhf libapt-pkg5.0 armhf 1.5~beta1 [722 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main armhf apt-transport-https armhf 1.5~beta1 [30.7 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main armhf libp11-kit0 armhf 0.23.7-3 [163 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main armhf libtasn1-6 armhf 4.12-2 [30.7 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main armhf libgnutls30 armhf 3.5.8-6ubuntu1 [617 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main armhf apt armhf 1.5~beta1 [1067 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main armhf libip4tc0 armhf 1.6.1-2ubuntu1 [17.9 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main armhf libapparmor1 armhf 2.11.0-2ubuntu8 [26.0 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main armhf libaudit-common all 1:2.7.7-1ubuntu1 [4118 B] Get:31 http://ftpmaster.internal/ubuntu artful/main armhf libaudit1 armhf 1:2.7.7-1ubuntu1 [35.1 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main armhf libselinux1 armhf 2.6-3build1 [59.4 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage-common all 2.6-2build1 [6738 B] Get:34 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage1 armhf 2.6-2build1 [71.1 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main armhf passwd armhf 1:4.2-3.2ubuntu2 [747 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main armhf libuuid1 armhf 2.29-1ubuntu3 [14.4 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main armhf libblkid1 armhf 2.29-1ubuntu3 [98.2 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main armhf libgpg-error0 armhf 1.27-3 [32.0 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main armhf libgcrypt20 armhf 1.7.8-2 [344 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main armhf libkmod2 armhf 24-1ubuntu1 [34.8 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main armhf libmount1 armhf 2.29-1ubuntu3 [106 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main armhf systemd armhf 233-8ubuntu3 [2250 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main armhf libsystemd0 armhf 233-8ubuntu3 [191 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main armhf systemd-sysv armhf 233-8ubuntu3 [12.3 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main armhf libfdisk1 armhf 2.29-1ubuntu3 [132 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main armhf libsmartcols1 armhf 2.29-1ubuntu3 [60.5 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main armhf libudev1 armhf 233-8ubuntu3 [51.3 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main armhf libdevmapper1.02.1 armhf 2:1.02.137-2ubuntu2 [125 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main armhf dmsetup armhf 2:1.02.137-2ubuntu2 [71.2 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main armhf libroken18-heimdal armhf 7.4.0.dfsg.1-1 [33.8 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main armhf libasn1-8-heimdal armhf 7.4.0.dfsg.1-1 [138 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main armhf libheimbase1-heimdal armhf 7.4.0.dfsg.1-1 [23.9 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main armhf libhcrypto4-heimdal armhf 7.4.0.dfsg.1-1 [77.4 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main armhf libwind0-heimdal armhf 7.4.0.dfsg.1-1 [47.2 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main armhf libhx509-5-heimdal armhf 7.4.0.dfsg.1-1 [88.1 kB] Get:56 http://ftpmaster.internal/ubuntu artful/main armhf libsqlite3-0 armhf 3.19.3-2 [416 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main armhf libkrb5-26-heimdal armhf 7.4.0.dfsg.1-1 [169 kB] Get:58 http://ftpmaster.internal/ubuntu artful/main armhf libheimntlm0-heimdal armhf 7.4.0.dfsg.1-1 [13.3 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main armhf libgssapi3-heimdal armhf 7.4.0.dfsg.1-1 [79.5 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-7ubuntu1 [132 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main armhf libldap-common all 2.4.44+dfsg-7ubuntu1 [16.4 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main armhf libnpth0 armhf 1.5-2 [6582 B] Get:63 http://ftpmaster.internal/ubuntu artful/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu13 [711 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main armhf tzdata all 2017b-2 [203 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main armhf openssl armhf 1.0.2g-1ubuntu13 [485 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main armhf ca-certificates all 20161130+nmu1 [186 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main armhf libgssapi-krb5-2 armhf 1.15.1-1 [98.7 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main armhf libkrb5-3 armhf 1.15.1-1 [231 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main armhf libkrb5support0 armhf 1.15.1-1 [28.2 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main armhf libk5crypto3 armhf 1.15.1-1 [82.8 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main armhf libidn2-0 armhf 2.0.2-1 [86.6 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main armhf libpng16-16 armhf 1.6.29-3 [157 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main armhf libpsl5 armhf 0.17.0-5 [39.4 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main armhf advancecomp armhf 2.0-1 [167 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main armhf dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main armhf libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:77 http://ftpmaster.internal/ubuntu artful/main armhf libusb-0.1-4 armhf 2:0.1.12-31 [15.6 kB] Get:78 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf cpp armhf 4:7.1.0-1ubuntu0.1 [27.6 kB] Get:79 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libgomp1 armhf 7.1.0-9ubuntu1 [64.6 kB] Get:80 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libubsan0 armhf 7.1.0-9ubuntu1 [104 kB] Get:81 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libatomic1 armhf 7.1.0-9ubuntu1 [6252 B] Get:82 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libasan3 armhf 6.4.0-1ubuntu2 [292 kB] Get:83 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf g++-6 armhf 6.4.0-1ubuntu2 [5925 kB] Get:84 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libstdc++-6-dev armhf 6.4.0-1ubuntu2 [1481 kB] Get:85 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf gcc-6 armhf 6.4.0-1ubuntu2 [5805 kB] Get:86 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libgcc-6-dev armhf 6.4.0-1ubuntu2 [550 kB] Get:87 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libcc1-0 armhf 7.1.0-9ubuntu1 [31.5 kB] Get:88 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf cpp-6 armhf 6.4.0-1ubuntu2 [5202 kB] Get:89 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf gcc-6-base armhf 6.4.0-1ubuntu2 [17.5 kB] Get:90 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libasan4 armhf 7.1.0-9ubuntu1 [308 kB] Get:91 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libcilkrts5 armhf 7.1.0-9ubuntu1 [35.9 kB] Get:92 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libgcc-7-dev armhf 7.1.0-9ubuntu1 [685 kB] Get:93 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf gcc-7 armhf 7.1.0-9ubuntu1 [28.9 MB] Get:94 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf gcc armhf 4:7.1.0-1ubuntu0.1 [5288 B] Get:95 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf libstdc++-7-dev armhf 7.1.0-9ubuntu1 [1482 kB] Get:96 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf g++-7 armhf 7.1.0-9ubuntu1 [31.7 MB] Get:97 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf g++ armhf 4:7.1.0-1ubuntu0.1 [1490 B] Get:98 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu artful/main armhf linux-libc-dev armhf 4.11.0-10.15 [903 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 139 MB in 4s (29.4 MB/s) (Reading database ... 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Selecting previously unselected package gcc-7-base:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12213 files and directories currently installed.) Preparing to unpack .../gcc-7-base_7.1.0-9ubuntu1_armhf.deb ... Unpacking gcc-7-base:armhf (7.1.0-9ubuntu1) ... Setting up gcc-7-base:armhf (7.1.0-9ubuntu1) ... (Reading database ... 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Setting up libcilkrts5:armhf (7.1.0-9ubuntu1) ... Setting up libpsl5:armhf (0.17.0-5) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 15 21:11:09 UTC 2017. Universal Time is now: Sat Jul 15 21:11:09 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu3) ... Setting up libubsan0:armhf (7.1.0-9ubuntu1) ... Setting up gcc-6-base:armhf (6.4.0-1ubuntu2) ... Setting up linux-libc-dev:armhf (4.11.0-10.15) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.137-2ubuntu2) ... Setting up libkrb5support0:armhf (1.15.1-1) ... Setting up libgcc-7-dev:armhf (7.1.0-9ubuntu1) ... Setting up cpp-7 (7.1.0-9ubuntu1) ... Setting up libstdc++-7-dev:armhf (7.1.0-9ubuntu1) ... Setting up perl (5.24.1-7ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:armhf (3.19.3-2) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28.90.20170704-0ubuntu1) ... Setting up cpp-6 (6.4.0-1ubuntu2) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:armhf (2:0.1.12-31) ... Setting up cpp (4:7.1.0-1ubuntu0.1) ... Setting up libk5crypto3:armhf (1.15.1-1) ... Setting up libasan3:armhf (6.4.0-1ubuntu2) ... Setting up libgcc-6-dev:armhf (6.4.0-1ubuntu2) ... Setting up libstdc++-6-dev:armhf (6.4.0-1ubuntu2) ... Setting up libwind0-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up gcc-7 (7.1.0-9ubuntu1) ... Setting up g++-7 (7.1.0-9ubuntu1) ... Setting up libasn1-8-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libhcrypto4-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up gcc (4:7.1.0-1ubuntu0.1) ... Setting up libhx509-5-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up gcc-6 (6.4.0-1ubuntu2) ... Setting up g++-6 (6.4.0-1ubuntu2) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up g++ (4:7.1.0-1ubuntu0.1) ... Setting up libkrb5-3:armhf (1.15.1-1) ... Setting up libkrb5-26-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libheimntlm0-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libgssapi-krb5-2:armhf (1.15.1-1) ... Setting up libgssapi3-heimdal:armhf (7.4.0.dfsg.1-1) ... Setting up libldap-2.4-2:armhf (2.4.44+dfsg-7ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12964101', 'armhf', 'artful', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=artful', '--purge=never', '--nolog', 'dipy_0.11.0-1.dsc'] Initiating build PACKAGEBUILD-12964101 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:58:57 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-027.buildd +==============================================================================+ | dipy 0.11.0-1 (armhf) 15 Jul 2017 21:11 | +==============================================================================+ Package: dipy Version: 0.11.0-1 Source Version: 0.11.0-1 Distribution: artful Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/dipy-3_gl2Y/dipy-0.11.0' with '<>' I: NOTICE: Log filtering will replace 'build/dipy-3_gl2Y' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12964101/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dipy_0.11.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-rC7HAu/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-rC7HAu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rC7HAu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rC7HAu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rC7HAu/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-rC7HAu/apt_archive ./ Packages [523 B] Fetched 2856 B in 0s (66.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-6 libstdc++-6-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-rC7HAu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13212 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 Filtered Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 dpkg-deb: building package 'sbuild-build-depends-dipy-dummy' in '/<>/resolver-50hgr4/apt_archive/sbuild-build-depends-dipy-dummy.deb'. Ign:1 copy:/<>/resolver-50hgr4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-50hgr4/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-50hgr4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-50hgr4/apt_archive ./ Sources [284 B] Get:5 copy:/<>/resolver-50hgr4/apt_archive ./ Packages [606 B] Fetched 3009 B in 0s (72.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dipy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common gvfs libjs-jquery-ui-docs librsvg2-bin libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-setuptools python-pyparsing-doc python-cryptography python-idna python-openssl python-socks python-scipy-doc python-sphinx-rtd-theme libjs-mathjax texlive-fonts-recommended texlive-generic-extra sphinx-doc python-ntlm python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx-cur dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-glade2 python-imaging python-tk python-dicom python-fuse python-mock python-enum34 python-cryptography python-idna python-ipaddress python-openssl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-dipy-dummy sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core 0 upgraded, 145 newly installed, 1 to remove and 0 not upgraded. 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Setting up libgdk-pixbuf2.0-common (2.36.5-3) ... Setting up libdatrie1:armhf (0.2.10-4) ... Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libjpeg-turbo8:armhf (1.5.1-0ubuntu1) ... Setting up libpipeline1:armhf (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libicu57:armhf (57.1-6) ... Setting up libbsd0:armhf (0.8.5-1) ... Setting up ucf (3.0036) ... Setting up libxml2:armhf (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libfreetype6:armhf (2.6.3-3.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:armhf (1:5.30-1) ... Setting up libgraphite2-3:armhf (1.3.10-2) ... Setting up libcroco3:armhf (0.6.12-1) ... Setting up libatk1.0-data (2.22.0-1) ... Setting up libpixman-1-0:armhf (0.34.0-1) ... Setting up libblas3 (3.7.1-1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libatk1.0-0:armhf (2.22.0-1) ... Setting up python-babel-localedata (2.3.4+dfsg.1-2ubuntu1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up sphinx-common (1.5.6-2) ... Setting up libexpat1-dev:armhf (2.2.1-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up shared-mime-info (1.8-1) ... Setting up libthai-data (0.1.26-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hicolor-icon-theme (0.15-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:armhf (2.7.13-2) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libdbus-1-3:armhf (1.10.18-1ubuntu2) ... Setting up libavahi-common-data:armhf (0.6.32-1ubuntu1) ... Setting up fonts-lyx (2.2.3-1) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2ubuntu2) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up liblapack3 (3.7.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python2.7 (2.7.13-2) ... Setting up libharfbuzz0b:armhf (1.4.2-1) ... Setting up libtiff5:armhf (4.0.8-3) ... Setting up autoconf (2.69-10) ... Setting up libthai0:armhf (0.1.26-2) ... Setting up file (1:5.30-1) ... Setting up libpython-stdlib:armhf (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:armhf (2.7.13-2) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:armhf (2.7.13-2) ... Setting up libavahi-common3:armhf (0.6.32-1ubuntu1) ... Setting up python2.7-dev (2.7.13-2) ... Setting up libxcb1:armhf (1.11.1-1ubuntu1) ... Setting up python (2.7.13-2) ... Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up libtool (2.4.6-2) ... Setting up libpython-dev:armhf (2.7.13-2) ... Setting up libfontconfig1:armhf (2.11.94-0ubuntu2) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up libxcb-render0:armhf (1.11.1-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.13-2) ... Setting up python-tz (2017.2-2) ... Setting up libx11-6:armhf (2:1.6.4-3) ... Setting up libpython-all-dev:armhf (2.7.13-2) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (36.0.1-1) ... Setting up python-roman (2.0.0-2) ... Setting up python-markupsafe (1.0-1) ... Setting up python-numpy (1:1.12.1-3ubuntu1) ... Setting up cython (0.25.2-1build1) ... Setting up python-six (1.10.0-4) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up libxcomposite1:armhf (1:0.4.4-2) ... Setting up libxcb-shm0:armhf (1.11.1-1ubuntu1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libavahi-client3:armhf (0.6.32-1ubuntu1) ... Setting up python-decorator (4.0.11-1) ... Setting up python-subprocess32 (3.2.7-2) ... Setting up python-nose (1.3.7-2) ... Setting up python-all (2.7.13-2) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libcups2:armhf (2.2.3-2) ... Setting up python-urllib3 (1.19.1-1) ... Setting up python-chardet (3.0.4-1) ... Setting up libxdamage1:armhf (1:1.1.4-2) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up python-scipy (0.18.1-2ubuntu1) ... Setting up python-jinja2 (2.9.6-1) ... Setting up python-babel (2.3.4+dfsg.1-2ubuntu1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libgdk-pixbuf2.0-0:armhf (2.36.5-3) ... Setting up python-cycler (0.10.0-1) ... Setting up python-dateutil (2.6.0-1) ... Setting up gtk-update-icon-cache (3.22.15-0ubuntu2) ... Setting up libxcursor1:armhf (1:1.1.14-1) ... Setting up python-all-dev (2.7.13-2) ... Setting up libpango-1.0-0:armhf (1.40.5-1) ... Setting up python-requests (2.12.4-1) ... Setting up python-nibabel (2.1.0-1) ... Setting up libxrandr2:armhf (2:1.5.1-1) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up libcairo2:armhf (1.14.8-1) ... Setting up libxinerama1:armhf (2:1.1.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.40.5-1) ... Setting up libpangocairo-1.0-0:armhf (1.40.5-1) ... Setting up librsvg2-2:armhf (2.40.16-2) ... Setting up librsvg2-common:armhf (2.40.16-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.5.6-2) ... Setting up adwaita-icon-theme (3.24.0-0ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:armhf (2.24.31-1ubuntu1) ... Setting up dh-autoreconf (14) ... Setting up python-matplotlib (2.0.0+dfsg1-2ubuntu2) ... Setting up humanity-icon-theme (0.6.13) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up debhelper (10.4ubuntu3) ... Setting up ubuntu-mono (16.10+17.10.20170703-0ubuntu1) ... Setting up sbuild-build-depends-dipy-dummy (0.invalid.0) ... (Reading database ... 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Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-83-generic arm64 (armv7l) Toolchain package versions: binutils_2.28.90.20170704-0ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.4.0-1ubuntu2 g++-7_7.1.0-9ubuntu1 gcc-6_6.4.0-1ubuntu2 gcc-7_7.1.0-9ubuntu1 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.4.0-1ubuntu2 libstdc++-7-dev_7.1.0-9ubuntu1 libstdc++6_7.1.0-9ubuntu1 linux-libc-dev_4.11.0-10.15 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 adwaita-icon-theme_3.24.0-0ubuntu1 apt_1.5~beta1 apt-transport-https_1.5~beta1 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu101 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28.90.20170704-0ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:7.1.0-1ubuntu0.1 cpp-6_6.4.0-1ubuntu2 cpp-7_7.1.0-9ubuntu1 cython_0.25.2-1build1 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 docutils-common_0.13.1+dfsg-2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20170606-3 fontconfig_2.11.94-0ubuntu2 fontconfig-config_2.11.94-0ubuntu2 fonts-lyx_2.2.3-1 g++_4:7.1.0-1ubuntu0.1 g++-6_6.4.0-1ubuntu2 g++-7_7.1.0-9ubuntu1 gcc_4:7.1.0-1ubuntu0.1 gcc-6_6.4.0-1ubuntu2 gcc-6-base_6.4.0-1ubuntu2 gcc-7_7.1.0-9ubuntu1 gcc-7-base_7.1.0-9ubuntu1 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_3.1-2 groff-base_1.22.3-9 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libcilkrts5_7.1.0-9ubuntu1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcups2_2.2.3-2 libcurl3-gnutls_7.52.1-5ubuntu1 libdatrie1_0.2.10-4 libdb5.3_5.3.28-13 libdbus-1-3_1.10.18-1ubuntu2 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.1-2 libexpat1-dev_2.2.1-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libfontconfig1_2.11.94-0ubuntu2 libfreetype6_2.6.3-3.2ubuntu1 libgcc-6-dev_6.4.0-1ubuntu2 libgcc-7-dev_7.1.0-9ubuntu1 libgcc1_1:7.1.0-9ubuntu1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.36.5-3 libgdk-pixbuf2.0-common_2.36.5-3 libgfortran3_6.4.0-1ubuntu2 libglib2.0-0_2.53.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-9ubuntu1 libgpg-error0_1.27-3 libgraphite2-3_1.3.10-2 libgssapi-krb5-2_1.15.1-1 libgssapi3-heimdal_7.4.0.dfsg.1-1 libgtk2.0-0_2.24.31-1ubuntu1 libgtk2.0-common_2.24.31-1ubuntu1 libharfbuzz0b_1.4.2-1 libhcrypto4-heimdal_7.4.0.dfsg.1-1 libheimbase1-heimdal_7.4.0.dfsg.1-1 libheimntlm0-heimdal_7.4.0.dfsg.1-1 libhogweed4_3.3-1 libhx509-5-heimdal_7.4.0.dfsg.1-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libjbig0_2.1-3.1 libjpeg-turbo8_1.5.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.1.1-2 libjs-jquery-ui_1.12.1+dfsg-4 libjs-sphinxdoc_1.5.6-2 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15.1-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.4.0.dfsg.1-1 libkrb5-3_1.15.1-1 libkrb5support0_1.15.1-1 libksba8_1.3.5-2 liblapack3_3.7.1-1 libldap-2.4-2_2.4.44+dfsg-7ubuntu1 libldap-common_2.4.44+dfsg-7ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpango-1.0-0_1.40.5-1 libpangocairo-1.0-0_1.40.5-1 libpangoft2-1.0-0_1.40.5-1 libpcre3_2:8.39-3 libperl5.24_5.24.1-7ubuntu1 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-5 libpython-all-dev_2.7.13-2 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-1 librsvg2-2_2.40.16-2 librsvg2-common_2.40.16-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.19.3-2 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.4.0-1ubuntu2 libstdc++-7-dev_7.1.0-9ubuntu1 libstdc++6_7.1.0-9ubuntu1 libsystemd0_233-8ubuntu3 libtasn1-6_4.12-2 libthai-data_0.1.26-2 libthai0_0.1.26-2 libtiff5_4.0.8-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-9ubuntu1 libudev1_233-8ubuntu3 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.4.0.dfsg.1-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1 libxml2_2.9.4+dfsg1-2.2ubuntu1 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 linux-libc-dev_4.11.0-10.15 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-7ubuntu1 perl-base_5.24.1-7ubuntu1 perl-modules-5.24_5.24.1-7ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-2 python-alabaster_0.7.8-1 python-all_2.7.13-2 python-all-dev_2.7.13-2 python-babel_2.3.4+dfsg.1-2ubuntu1 python-babel-localedata_2.3.4+dfsg.1-2ubuntu1 python-chardet_3.0.4-1 python-cycler_0.10.0-1 python-dateutil_2.6.0-1 python-decorator_4.0.11-1 python-dev_2.7.13-2 python-docutils_0.13.1+dfsg-2 python-functools32_3.2.3.2-3 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1 python-matplotlib_2.0.0+dfsg1-2ubuntu2 python-matplotlib-data_2.0.0+dfsg1-2ubuntu2 python-minimal_2.7.13-2 python-nibabel_2.1.0-1 python-nose_1.3.7-2 python-numpy_1:1.12.1-3ubuntu1 python-pkg-resources_36.0.1-1 python-pygments_2.2.0+dfsg-1 python-pyparsing_2.1.10+dfsg1-1 python-requests_2.12.4-1 python-roman_2.0.0-2 python-scipy_0.18.1-2ubuntu1 python-six_1.10.0-4 python-sphinx_1.5.6-2 python-subprocess32_3.2.7-2 python-tz_2017.2-2 python-urllib3_1.19.1-1 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dipy-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 sgml-base_1.29 shared-mime-info_1.8-1 sphinx-common_1.5.6-2 systemd_233-8ubuntu3 systemd-sysv_233-8ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 ttf-bitstream-vera_1.10-8 tzdata_2017b-2 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+17.10.20170703-0ubuntu1 ucf_3.0036 util-linux_2.29-1ubuntu3 xml-core_0.17 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Feb 22 20:44:45 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dipy_0.11.0-1.dsc dpkg-source: info: extracting dipy in dipy-0.11.0 dpkg-source: info: unpacking dipy_0.11.0.orig.tar.gz dpkg-source: info: unpacking dipy_0.11.0.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.11.0-1.debian.tar.xz dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 0.11.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build dipy-0.11.0 dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from dipy-0.11.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ fakeroot debian/rules clean dh --buildsystem=python_distutils clean --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -O--buildsystem=python_distutils debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find dipy -iname *.c | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f rm -f pyx-stamps dh_auto_clean override_dh_auto_clean dh_auto_clean: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py clean -a running clean 'build/lib.linux-armv7l-2.7' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/<>/doc' rm -rf reference/*.rst cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory Makefile:31: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory '/<>/doc' dh_clean dh_clean: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' debian/rules build-arch dh --buildsystem=python_distutils build-arch --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -a -O--buildsystem=python_distutils dh_update_autotools_config -a -O--buildsystem=python_distutils dh_auto_configure -a -O--buildsystem=python_distutils dh_auto_configure: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.21" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : dh_auto_build dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py build --force running build running build_py creating build creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/dipy copying dipy/__init__.py -> build/lib.linux-armv7l-2.7/dipy copying dipy/info.py -> build/lib.linux-armv7l-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-armv7l-2.7/dipy creating build/lib.linux-armv7l-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-armv7l-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.linux-armv7l-2.7/dipy/tests creating build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.linux-armv7l-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.linux-armv7l-2.7/dipy/align creating build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.linux-armv7l-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.linux-armv7l-2.7/dipy/align/tests creating build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-armv7l-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.linux-armv7l-2.7/dipy/core creating build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-armv7l-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-armv7l-2.7/dipy/core/tests creating build/lib.linux-armv7l-2.7/dipy/direction copying dipy/direction/probabilistic_direction_getter.py -> build/lib.linux-armv7l-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.linux-armv7l-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.linux-armv7l-2.7/dipy/direction creating build/lib.linux-armv7l-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.linux-armv7l-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.linux-armv7l-2.7/dipy/direction/tests creating build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/gui_tools.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/markov.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-armv7l-2.7/dipy/tracking copying dipy/tracking/interfaces.py -> build/lib.linux-armv7l-2.7/dipy/tracking creating build/lib.linux-armv7l-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.linux-armv7l-2.7/dipy/tracking/local creating build/lib.linux-armv7l-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.linux-armv7l-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_local_tracking.py -> build/lib.linux-armv7l-2.7/dipy/tracking/local/tests creating build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_localtrack.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_markov.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-armv7l-2.7/dipy/tracking/tests creating build/lib.linux-armv7l-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.linux-armv7l-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.linux-armv7l-2.7/dipy/tracking/benchmarks creating build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.linux-armv7l-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.linux-armv7l-2.7/dipy/reconst creating build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks creating build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri_odf.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_fitting.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-armv7l-2.7/dipy/reconst/tests creating build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-armv7l-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-armv7l-2.7/dipy/io creating build/lib.linux-armv7l-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-armv7l-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-armv7l-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-armv7l-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-armv7l-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/io/tests creating build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/window.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/widget.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/actor.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-armv7l-2.7/dipy/viz copying dipy/viz/utils.py -> build/lib.linux-armv7l-2.7/dipy/viz creating build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_window.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_utils.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_widgets.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_actors.py -> build/lib.linux-armv7l-2.7/dipy/viz/tests creating build/lib.linux-armv7l-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-armv7l-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-armv7l-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.linux-armv7l-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-armv7l-2.7/dipy/testing creating build/lib.linux-armv7l-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.linux-armv7l-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-armv7l-2.7/dipy/testing/tests creating build/lib.linux-armv7l-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-armv7l-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-armv7l-2.7/dipy/boots creating build/lib.linux-armv7l-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-armv7l-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-armv7l-2.7/dipy/data creating build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-armv7l-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-armv7l-2.7/dipy/utils creating build/lib.linux-armv7l-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-armv7l-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.linux-armv7l-2.7/dipy/utils/tests creating build/lib.linux-armv7l-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-armv7l-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-armv7l-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.linux-armv7l-2.7/dipy/fixes creating build/lib.linux-armv7l-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-armv7l-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-armv7l-2.7/dipy/external creating build/lib.linux-armv7l-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/external/tests creating build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.linux-armv7l-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-armv7l-2.7/dipy/segment creating build/lib.linux-armv7l-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.linux-armv7l-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.linux-armv7l-2.7/dipy/segment/benchmarks creating build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.linux-armv7l-2.7/dipy/segment/tests creating build/lib.linux-armv7l-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-armv7l-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-armv7l-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-armv7l-2.7/dipy/sims creating build/lib.linux-armv7l-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-armv7l-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-armv7l-2.7/dipy/sims/tests creating build/lib.linux-armv7l-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.linux-armv7l-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.linux-armv7l-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.linux-armv7l-2.7/dipy/denoise creating build/lib.linux-armv7l-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.linux-armv7l-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.linux-armv7l-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.linux-armv7l-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.linux-armv7l-2.7/dipy/denoise/tests creating build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.linux-armv7l-2.7/dipy/workflows copying dipy/workflows/utils.py -> build/lib.linux-armv7l-2.7/dipy/workflows creating build/lib.linux-armv7l-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.linux-armv7l-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.linux-armv7l-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.linux-armv7l-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.linux-armv7l-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_utils.py -> build/lib.linux-armv7l-2.7/dipy/workflows/tests creating build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.linux-armv7l-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.linux-armv7l-2.7/dipy/data/files running build_ext arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o /arch:SSE2 arm-linux-gnueabihf-gcc: error: /arch:SSE2: No such file or directory Flags ['/arch:SSE2'] omitted because of compile or link error arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse arm-linux-gnueabihf-gcc: error: unrecognized command line option ‘-msse2’ arm-linux-gnueabihf-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp cythoning dipy/reconst/peak_direction_getter.pyx to dipy/reconst/peak_direction_getter.c warning: dipy/reconst/peak_direction_getter.pyx:57:4: Overriding cdef method with def method. building 'dipy.reconst.peak_direction_getter' extension creating build/temp.linux-armv7l-2.7 creating build/temp.linux-armv7l-2.7/dipy creating build/temp.linux-armv7l-2.7/dipy/reconst arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/peak_direction_getter.c -o build/temp.linux-armv7l-2.7/dipy/reconst/peak_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/peak_direction_getter.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/reconst/peak_direction_getter.c: In function ‘__pyx_pw_4dipy_7reconst_21peak_direction_getter_30PeaksAndMetricsDirectionGetter_5initial_direction’: dipy/reconst/peak_direction_getter.c:3234:3: warning: ‘__pyx_v_numpeaks’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (__pyx_t_16 = 0; __pyx_t_16 < __pyx_t_5; __pyx_t_16+=1) { ^~~ dipy/reconst/peak_direction_getter.c:2937:12: note: ‘__pyx_v_numpeaks’ was declared here npy_intp __pyx_v_numpeaks; ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/reconst/peak_direction_getter.o -o build/lib.linux-armv7l-2.7/dipy/reconst/peak_direction_getter.so -fopenmp cythoning dipy/reconst/recspeed.pyx to dipy/reconst/recspeed.c warning: dipy/reconst/recspeed.pyx:570:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:59: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.reconst.recspeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-armv7l-2.7/dipy/reconst/recspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/reconst/recspeed.o -o build/lib.linux-armv7l-2.7/dipy/reconst/recspeed.so -fopenmp cythoning dipy/reconst/vec_val_sum.pyx to dipy/reconst/vec_val_sum.c building 'dipy.reconst.vec_val_sum' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-armv7l-2.7/dipy/reconst/vec_val_sum.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-armv7l-2.7/dipy/reconst/vec_val_sum.so -fopenmp cythoning dipy/reconst/quick_squash.pyx to dipy/reconst/quick_squash.c building 'dipy.reconst.quick_squash' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-armv7l-2.7/dipy/reconst/quick_squash.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-armv7l-2.7/dipy/reconst/quick_squash.so -fopenmp cythoning dipy/tracking/distances.pyx to dipy/tracking/distances.c warning: dipy/tracking/distances.pyx:253:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:53: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:254:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:254:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:622:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:622:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:660:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:660:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:748:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:748:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:816:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:816:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:42: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:49: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:56: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:63: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:43: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1059:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1059:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1543:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1985:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1985:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.distances' extension creating build/temp.linux-armv7l-2.7/dipy/tracking arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-armv7l-2.7/dipy/tracking/distances.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_f_4dipy_8tracking_9distances_czhang’: dipy/tracking/distances.c:8571:10: warning: ‘__pyx_v_dist_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] return __pyx_r; ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_pf_4dipy_8tracking_9distances_14cut_plane.isra.41’: dipy/tracking/distances.c:3080:59: warning: ‘*((void *)&__pyx_v_normal+8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4451:9: note: ‘*((void *)&__pyx_v_normal+8)’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3080:59: warning: ‘*((void *)&__pyx_v_normal+4)’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4451:9: note: ‘*((void *)&__pyx_v_normal+4)’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3080:59: warning: ‘__pyx_v_normal’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4451:9: note: ‘__pyx_v_normal’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/distances.o -o build/lib.linux-armv7l-2.7/dipy/tracking/distances.so -fopenmp cythoning dipy/tracking/streamlinespeed.pyx to dipy/tracking/streamlinespeed.c building 'dipy.tracking.streamlinespeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/streamlinespeed.c -o build/temp.linux-armv7l-2.7/dipy/tracking/streamlinespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/streamlinespeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/streamlinespeed.o -o build/lib.linux-armv7l-2.7/dipy/tracking/streamlinespeed.so -fopenmp cythoning dipy/tracking/local/localtrack.pyx to dipy/tracking/local/localtrack.c warning: dipy/tracking/local/localtrack.pyx:153:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.local.localtrack' extension creating build/temp.linux-armv7l-2.7/dipy/tracking/local arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/localtrack.c -o build/temp.linux-armv7l-2.7/dipy/tracking/local/localtrack.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/localtrack.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/local/localtrack.o -o build/lib.linux-armv7l-2.7/dipy/tracking/local/localtrack.so -fopenmp cythoning dipy/tracking/local/direction_getter.pyx to dipy/tracking/local/direction_getter.c building 'dipy.tracking.local.direction_getter' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/direction_getter.c -o build/temp.linux-armv7l-2.7/dipy/tracking/local/direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/direction_getter.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/local/direction_getter.o -o build/lib.linux-armv7l-2.7/dipy/tracking/local/direction_getter.so -fopenmp cythoning dipy/tracking/local/tissue_classifier.pyx to dipy/tracking/local/tissue_classifier.c building 'dipy.tracking.local.tissue_classifier' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/tissue_classifier.c -o build/temp.linux-armv7l-2.7/dipy/tracking/local/tissue_classifier.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/tissue_classifier.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/local/tissue_classifier.o -o build/lib.linux-armv7l-2.7/dipy/tracking/local/tissue_classifier.so -fopenmp cythoning dipy/tracking/local/interpolation.pyx to dipy/tracking/local/interpolation.c building 'dipy.tracking.local.interpolation' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/interpolation.c -o build/temp.linux-armv7l-2.7/dipy/tracking/local/interpolation.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/interpolation.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/local/interpolation.o -o build/lib.linux-armv7l-2.7/dipy/tracking/local/interpolation.so -fopenmp cythoning dipy/tracking/vox2track.pyx to dipy/tracking/vox2track.c building 'dipy.tracking.vox2track' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-armv7l-2.7/dipy/tracking/vox2track.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/vox2track.o -o build/lib.linux-armv7l-2.7/dipy/tracking/vox2track.so -fopenmp cythoning dipy/tracking/propspeed.pyx to dipy/tracking/propspeed.c warning: dipy/tracking/propspeed.pyx:134:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:134:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:135:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:45: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:370:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.propspeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-armv7l-2.7/dipy/tracking/propspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/tracking/propspeed.o -o build/lib.linux-armv7l-2.7/dipy/tracking/propspeed.so -fopenmp cythoning dipy/segment/cythonutils.pyx to dipy/segment/cythonutils.c building 'dipy.segment.cythonutils' extension creating build/temp.linux-armv7l-2.7/dipy/segment arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/cythonutils.c -o build/temp.linux-armv7l-2.7/dipy/segment/cythonutils.o -fopenmp arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/segment/cythonutils.o -o build/lib.linux-armv7l-2.7/dipy/segment/cythonutils.so -fopenmp cythoning dipy/segment/featurespeed.pyx to dipy/segment/featurespeed.c building 'dipy.segment.featurespeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/featurespeed.c -o build/temp.linux-armv7l-2.7/dipy/segment/featurespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/featurespeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/segment/featurespeed.o -o build/lib.linux-armv7l-2.7/dipy/segment/featurespeed.so -fopenmp cythoning dipy/segment/metricspeed.pyx to dipy/segment/metricspeed.c building 'dipy.segment.metricspeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/metricspeed.c -o build/temp.linux-armv7l-2.7/dipy/segment/metricspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/metricspeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/segment/metricspeed.o -o build/lib.linux-armv7l-2.7/dipy/segment/metricspeed.so -fopenmp cythoning dipy/segment/clusteringspeed.pyx to dipy/segment/clusteringspeed.c building 'dipy.segment.clusteringspeed' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/clusteringspeed.c -o build/temp.linux-armv7l-2.7/dipy/segment/clusteringspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clusteringspeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/segment/clusteringspeed.o -o build/lib.linux-armv7l-2.7/dipy/segment/clusteringspeed.so -fopenmp cythoning dipy/segment/clustering_algorithms.pyx to dipy/segment/clustering_algorithms.c building 'dipy.segment.clustering_algorithms' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/clustering_algorithms.c -o build/temp.linux-armv7l-2.7/dipy/segment/clustering_algorithms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clustering_algorithms.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/segment/clustering_algorithms.o -o build/lib.linux-armv7l-2.7/dipy/segment/clustering_algorithms.so -fopenmp cythoning dipy/denoise/denspeed.pyx to dipy/denoise/denspeed.c building 'dipy.denoise.denspeed' extension creating build/temp.linux-armv7l-2.7/dipy/denoise arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/denspeed.c -o build/temp.linux-armv7l-2.7/dipy/denoise/denspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/denspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/denoise/denspeed.o -o build/lib.linux-armv7l-2.7/dipy/denoise/denspeed.so -fopenmp cythoning dipy/denoise/enhancement_kernel.pyx to dipy/denoise/enhancement_kernel.c building 'dipy.denoise.enhancement_kernel' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/enhancement_kernel.c -o build/temp.linux-armv7l-2.7/dipy/denoise/enhancement_kernel.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/enhancement_kernel.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/denoise/enhancement_kernel.o -o build/lib.linux-armv7l-2.7/dipy/denoise/enhancement_kernel.so -fopenmp cythoning dipy/denoise/shift_twist_convolution.pyx to dipy/denoise/shift_twist_convolution.c building 'dipy.denoise.shift_twist_convolution' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/shift_twist_convolution.c -o build/temp.linux-armv7l-2.7/dipy/denoise/shift_twist_convolution.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/shift_twist_convolution.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/denoise/shift_twist_convolution.o -o build/lib.linux-armv7l-2.7/dipy/denoise/shift_twist_convolution.so -fopenmp cythoning dipy/align/vector_fields.pyx to dipy/align/vector_fields.c building 'dipy.align.vector_fields' extension creating build/temp.linux-armv7l-2.7/dipy/align arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/vector_fields.c -o build/temp.linux-armv7l-2.7/dipy/align/vector_fields.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/vector_fields.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/vector_fields.o -o build/lib.linux-armv7l-2.7/dipy/align/vector_fields.so -fopenmp cythoning dipy/align/sumsqdiff.pyx to dipy/align/sumsqdiff.c building 'dipy.align.sumsqdiff' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/sumsqdiff.c -o build/temp.linux-armv7l-2.7/dipy/align/sumsqdiff.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/sumsqdiff.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/sumsqdiff.o -o build/lib.linux-armv7l-2.7/dipy/align/sumsqdiff.so -fopenmp cythoning dipy/align/expectmax.pyx to dipy/align/expectmax.c building 'dipy.align.expectmax' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/expectmax.c -o build/temp.linux-armv7l-2.7/dipy/align/expectmax.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/expectmax.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/expectmax.o -o build/lib.linux-armv7l-2.7/dipy/align/expectmax.so -fopenmp cythoning dipy/align/crosscorr.pyx to dipy/align/crosscorr.c building 'dipy.align.crosscorr' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/crosscorr.c -o build/temp.linux-armv7l-2.7/dipy/align/crosscorr.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/crosscorr.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/crosscorr.o -o build/lib.linux-armv7l-2.7/dipy/align/crosscorr.so -fopenmp cythoning dipy/align/bundlemin.pyx to dipy/align/bundlemin.c warning: dipy/align/bundlemin.pyx:288:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.align.bundlemin' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/bundlemin.c -o build/temp.linux-armv7l-2.7/dipy/align/bundlemin.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/bundlemin.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/bundlemin.o -o build/lib.linux-armv7l-2.7/dipy/align/bundlemin.so -fopenmp cythoning dipy/align/transforms.pyx to dipy/align/transforms.c building 'dipy.align.transforms' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/transforms.c -o build/temp.linux-armv7l-2.7/dipy/align/transforms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/transforms.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/transforms.o -o build/lib.linux-armv7l-2.7/dipy/align/transforms.so -fopenmp cythoning dipy/align/parzenhist.pyx to dipy/align/parzenhist.c building 'dipy.align.parzenhist' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/parzenhist.c -o build/temp.linux-armv7l-2.7/dipy/align/parzenhist.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/parzenhist.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-armv7l-2.7/dipy/align/parzenhist.o -o build/lib.linux-armv7l-2.7/dipy/align/parzenhist.so -fopenmp running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_peak_extraction -> build/scripts-2.7 copying and adjusting bin/dipy_fit_tensor -> build/scripts-2.7 copying and adjusting bin/dipy_sh_estimate -> build/scripts-2.7 copying and adjusting bin/dipy_quickbundles -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_peak_extraction from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_tensor from 664 to 775 changing mode of build/scripts-2.7/dipy_sh_estimate from 664 to 775 changing mode of build/scripts-2.7/dipy_quickbundles from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh --buildsystem=python_distutils binary-arch --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testroot -a -O--buildsystem=python_distutils dh_prep -a -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install dh_auto_install: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py install --force --root=/<>/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_py running build_ext arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o /arch:SSE2 arm-linux-gnueabihf-gcc: error: /arch:SSE2: No such file or directory Flags ['/arch:SSE2'] omitted because of compile or link error arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse arm-linux-gnueabihf-gcc: error: unrecognized command line option ‘-msse2’ arm-linux-gnueabihf-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EVqH4j/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp skipping 'dipy/reconst/peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/recspeed.c' Cython extension (up-to-date) skipping 'dipy/reconst/vec_val_sum.c' Cython extension (up-to-date) skipping 'dipy/reconst/quick_squash.c' Cython extension (up-to-date) skipping 'dipy/tracking/distances.c' Cython extension (up-to-date) skipping 'dipy/tracking/streamlinespeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/localtrack.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/direction_getter.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/tissue_classifier.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/interpolation.c' Cython extension (up-to-date) skipping 'dipy/tracking/vox2track.c' Cython extension (up-to-date) skipping 'dipy/tracking/propspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/cythonutils.c' Cython extension (up-to-date) skipping 'dipy/segment/featurespeed.c' Cython extension (up-to-date) skipping 'dipy/segment/metricspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clusteringspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clustering_algorithms.c' Cython extension (up-to-date) skipping 'dipy/denoise/denspeed.c' Cython extension (up-to-date) skipping 'dipy/denoise/enhancement_kernel.c' Cython extension (up-to-date) skipping 'dipy/denoise/shift_twist_convolution.c' Cython extension (up-to-date) skipping 'dipy/align/vector_fields.c' Cython extension (up-to-date) skipping 'dipy/align/sumsqdiff.c' Cython extension (up-to-date) skipping 'dipy/align/expectmax.c' Cython extension (up-to-date) skipping 'dipy/align/crosscorr.c' Cython extension (up-to-date) skipping 'dipy/align/bundlemin.c' Cython extension (up-to-date) skipping 'dipy/align/transforms.c' Cython extension (up-to-date) skipping 'dipy/align/parzenhist.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/tmp creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python2.7 creating /<>/debian/tmp/usr/lib/python2.7/dist-packages creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/projections.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/widget.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_fvtk_window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_fvtk_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_fvtk_widgets.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/tests/test_fvtk_actors.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-armv7l-2.7/dipy/viz/actor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/colormap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/viz/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-armv7l-2.7/dipy/__config__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/onetime.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/histeq.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/rng.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/profile.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/sphere_stats.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/tests/test_sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-armv7l-2.7/dipy/core/geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-armv7l-2.7/dipy/core/optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-armv7l-2.7/dipy/direction/probabilistic_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-armv7l-2.7/dipy/direction/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-armv7l-2.7/dipy/direction/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-armv7l-2.7/dipy/direction/tests/test_prob_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-armv7l-2.7/dipy/direction/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-armv7l-2.7/dipy/direction/tests/test_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/quick_squash.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_peakdf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_peak_finding.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_shore_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_shore_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_mapmri_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_shore_fitting.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_reco_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/tests/test_csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-armv7l-2.7/dipy/reconst/csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/bench_squash.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/bench_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-armv7l-2.7/dipy/reconst/gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/vec_val_sum.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/recspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-armv7l-2.7/dipy/reconst/dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-armv7l-2.7/dipy/external/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-armv7l-2.7/dipy/external/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-armv7l-2.7/dipy/external/fsl.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-armv7l-2.7/dipy/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-armv7l-2.7/dipy/info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-armv7l-2.7/dipy/fixes/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-armv7l-2.7/dipy/fixes/argparse.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-armv7l-2.7/dipy/fixes/scipy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/gui_tools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/streamlinespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/eudx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_propagation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_distances.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_localtrack.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_markov.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_track_volumes.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/tests/test_learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/distances.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/markov.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/propspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/local/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/local/tests/test_tissue_classifier.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/local/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/local/tests/test_local_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-armv7l-2.7/dipy/tracking/local/interpolation.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/local/tissue_classifier.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/local/direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/local/localtrack.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/local/localtracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-armv7l-2.7/dipy/tracking/vox2track.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-armv7l-2.7/dipy/tracking/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-armv7l-2.7/dipy/tracking/benchmarks/bench_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-armv7l-2.7/dipy/tracking/learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-armv7l-2.7/dipy/tracking/interfaces.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-armv7l-2.7/dipy/utils/_importlib.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-armv7l-2.7/dipy/utils/tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-armv7l-2.7/dipy/utils/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-armv7l-2.7/dipy/utils/six.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-armv7l-2.7/dipy/utils/optpkg.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-armv7l-2.7/dipy/utils/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-armv7l-2.7/dipy/utils/tests/test_arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-armv7l-2.7/dipy/utils/tests/test_tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-armv7l-2.7/dipy/utils/arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-armv7l-2.7/dipy/tests/test_scripts.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-armv7l-2.7/dipy/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-armv7l-2.7/dipy/tests/scriptrunner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/trackvis.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/tests/test_bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/tests/test_dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/tests/test_io_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-armv7l-2.7/dipy/io/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-armv7l-2.7/dipy/io/pickles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-armv7l-2.7/dipy/testing/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-armv7l-2.7/dipy/testing/decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-armv7l-2.7/dipy/testing/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-armv7l-2.7/dipy/testing/tests/test_memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-armv7l-2.7/dipy/testing/tests/test_decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-armv7l-2.7/dipy/testing/memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-armv7l-2.7/dipy/testing/spherepoints.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/reconst.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/tests/test_segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/tests/test_iap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/tests/test_docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-armv7l-2.7/dipy/workflows/segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-armv7l-2.7/dipy/workflows/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/clusteringspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/cythonutils.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_feature.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_qb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/tests/test_metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-armv7l-2.7/dipy/segment/threshold.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-armv7l-2.7/dipy/segment/benchmarks/bench_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-armv7l-2.7/dipy/segment/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-armv7l-2.7/dipy/segment/clustering_algorithms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/featurespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-armv7l-2.7/dipy/segment/metricspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-armv7l-2.7/dipy/sims/voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-armv7l-2.7/dipy/sims/phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-armv7l-2.7/dipy/sims/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-armv7l-2.7/dipy/sims/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-armv7l-2.7/dipy/sims/tests/test_phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-armv7l-2.7/dipy/sims/tests/test_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-armv7l-2.7/dipy/boots/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-armv7l-2.7/dipy/boots/resampling.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-armv7l-2.7/dipy/COMMIT_INFO.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/parzenhist.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/sumsqdiff.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/bundlemin.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/crosscorr.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_vector_fields.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_crosscorr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_sumsqdiff.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_expectmax.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_parzenhist.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/tests/test_transforms.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-armv7l-2.7/dipy/align/vector_fields.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/expectmax.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/transforms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-armv7l-2.7/dipy/align/imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-armv7l-2.7/dipy/data/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-armv7l-2.7/dipy/data/fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/55dir_grad.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/aniso_vox.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/C3.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_101D.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/S0_10slices.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/C.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/repulsion100.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/gtab_3shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_25.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/cb_2.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_64D.nii -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/life_matlab_rmse.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_25.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/fib1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/evenly_distributed_sphere_724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_64D.gradients.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_101D.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/gtab_isbi2013_2shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/gtab_taiwan_dsi.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/grad_514.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/tracks300.trk -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/t1_coronal_slice.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/ScannerVectors_GQI101.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/circle.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/fib0.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/repulsion724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/sphere_grad.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/evenly_distributed_sphere_642.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/dsi4169_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/dipy_colormaps.json -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/func_discrete.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/life_matlab_weights.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/evenly_distributed_sphere_362.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_101D.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_64D.bvals.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/test_piesno.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/fib2.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/dsi515_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/eg_3voxels.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/func_coef.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/C1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/small_25.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-armv7l-2.7/dipy/data/files/55dir_grad.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/denoise/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/denoise/denspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/denoise/enhancement_kernel.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/tests/test_kernel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/tests/test_denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/tests/test_noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/tests/test_nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-armv7l-2.7/dipy/denoise/nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/denoise/noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/denoise/shift_twist_convolution.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-armv7l-2.7/dipy/pkg_info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy running install_scripts creating /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_quickbundles -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_sh_estimate -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_peak_extraction -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_tensor -> /<>/debian/tmp/usr/bin changing mode of /<>/debian/tmp/usr/bin/dipy_quickbundles to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_sh_estimate to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_peak_extraction to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_tensor to 775 running install_data creating /<>/debian/tmp/usr/share creating /<>/debian/tmp/usr/share/doc creating /<>/debian/tmp/usr/share/doc/dipy creating /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_extending_clustering_framework.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_features.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_bundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/piesno.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_nlmeans.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_widgets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/deterministic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_tissue_classifier.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/contextual_enhancement.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/bundle_registration.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_slice.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/kfold_xval.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_2d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_advanced.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/linear_fascicle_evaluation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_reconst.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/affine_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_mapmri.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/introduction_to_basic_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /<>/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.11.0.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/doc/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/<>/build HOME=/<>/build; \ cd doc; /usr/bin/make html-after-examples SPHINXOPTS="-D today=\"February 22, 2016\"" make[2]: Entering directory '/<>/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="February 22, 2016" . _build/html Running Sphinx v1.5.6 making output directory... WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead. Initializing GitHub plugin loading pickled environment... not yet created WARNING: latex_preamble is deprecated. Define a latex_elements dict with a 'preamble' key. loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused',))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 95 source files that are out of date updating environment: 95 added, 0 changed, 0 removed reading sources... [ 1%] api_changes reading sources... [ 2%] cite reading sources... [ 3%] dependencies reading sources... [ 4%] devel/commit_codes reading sources... [ 5%] devel/gitwash/configure_git reading sources... [ 6%] devel/gitwash/development_workflow reading sources... [ 7%] devel/gitwash/dot2_dot3 reading sources... [ 8%] devel/gitwash/following_latest reading sources... [ 9%] devel/gitwash/forking_hell reading sources... [ 10%] devel/gitwash/git_development reading sources... [ 11%] devel/gitwash/git_install reading sources... [ 12%] devel/gitwash/git_intro reading sources... [ 13%] devel/gitwash/git_resources reading sources... [ 14%] devel/gitwash/index reading sources... [ 15%] devel/gitwash/maintainer_workflow reading sources... [ 16%] devel/gitwash/patching reading sources... [ 17%] devel/gitwash/set_up_fork reading sources... [ 18%] devel/index reading sources... [ 20%] devel/intro reading sources... [ 21%] devel/make_release reading sources... [ 22%] devel/python3 reading sources... [ 23%] developers reading sources... [ 24%] documentation reading sources... [ 25%] examples_built/affine_registration_3d reading sources... [ 26%] examples_built/brain_extraction_dwi reading sources... [ 27%] examples_built/bundle_registration reading sources... [ 28%] examples_built/contextual_enhancement reading sources... [ 29%] examples_built/denoise_nlmeans reading sources... [ 30%] examples_built/deterministic_fiber_tracking reading sources... [ 31%] examples_built/gradients_spheres reading sources... [ 32%] examples_built/introduction_to_basic_tracking reading sources... [ 33%] examples_built/kfold_xval reading sources... [ 34%] examples_built/linear_fascicle_evaluation reading sources... [ 35%] examples_built/piesno reading sources... [ 36%] examples_built/probabilistic_fiber_tracking reading sources... [ 37%] examples_built/quick_start reading sources... [ 38%] examples_built/reconst_csa reading sources... [ 40%] examples_built/reconst_csa_parallel reading sources... [ 41%] examples_built/reconst_csd reading sources... [ 42%] examples_built/reconst_csd_parallel reading sources... [ 43%] examples_built/reconst_dki reading sources... [ 44%] examples_built/reconst_dsi reading sources... [ 45%] examples_built/reconst_dsi_metrics reading sources... [ 46%] examples_built/reconst_dsid reading sources... [ 47%] examples_built/reconst_dti reading sources... [ 48%] examples_built/reconst_gqi reading sources... [ 49%] examples_built/reconst_shore reading sources... [ 50%] examples_built/reconst_shore_metrics reading sources... [ 51%] examples_built/reslice_datasets reading sources... [ 52%] examples_built/restore_dti reading sources... [ 53%] examples_built/segment_clustering_features reading sources... [ 54%] examples_built/segment_clustering_metrics reading sources... [ 55%] examples_built/segment_extending_clustering_framework reading sources... [ 56%] examples_built/segment_quickbundles reading sources... [ 57%] examples_built/sfm_reconst reading sources... [ 58%] examples_built/sfm_tracking reading sources... [ 60%] examples_built/simulate_multi_tensor reading sources... [ 61%] examples_built/snr_in_cc reading sources... [ 62%] examples_built/streamline_formats reading sources... [ 63%] examples_built/streamline_length reading sources... [ 64%] examples_built/streamline_tools reading sources... [ 65%] examples_built/syn_registration_2d reading sources... [ 66%] examples_built/syn_registration_3d reading sources... [ 67%] examples_built/tracking_eudx_odf reading sources... [ 68%] examples_built/tracking_eudx_tensor reading sources... [ 69%] examples_built/tracking_quick_start reading sources... [ 70%] examples_built/tracking_tissue_classifier reading sources... [ 71%] examples_built/viz_advanced reading sources... [ 72%] examples_built/viz_bundles reading sources... [ 73%] examples_built/viz_slice reading sources... [ 74%] examples_built/viz_widgets reading sources... [ 75%] examples_index reading sources... [ 76%] faq reading sources... [ 77%] gimbal_lock reading sources... [ 78%] glossary reading sources... [ 80%] index reading sources... [ 81%] installation reading sources... [ 82%] introduction reading sources... [ 83%] mission reading sources... [ 84%] note_about_examples reading sources... [ 85%] old_highlights reading sources... [ 86%] old_news reading sources... [ 87%] release0.10 reading sources... [ 88%] release0.11 reading sources... [ 89%] release0.6 reading sources... [ 90%] release0.7 reading sources... [ 91%] release0.8 reading sources... [ 92%] release0.9 reading sources... [ 93%] stateoftheart reading sources... [ 94%] subscribe reading sources... [ 95%] theory/b_and_q reading sources... [ 96%] theory/bmatrix reading sources... [ 97%] theory/gqi reading sources... [ 98%] theory/index reading sources... [100%] theory/spherical /<>/doc/devel/make_release.rst:78: ERROR: Unknown target name: "nipy buildbot". /<>/doc/devel/make_release.rst:80: ERROR: Unknown target name: "travis-ci". /<>/doc/devel/make_release.rst:163: ERROR: Unknown target name: "pypi". /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference/index' /<>/doc/examples_built/affine_registration_3d.rst:82: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:118: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:230: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:268: WARNING: Literal block expected; none found. /<>/doc/examples_built/contextual_enhancement.rst:77: WARNING: Literal block expected; none found. /<>/doc/examples_built/contextual_enhancement.rst:178: WARNING: Literal block expected; none found. /<>/doc/examples_built/gradients_spheres.rst:52: WARNING: Inline literal start-string without end-string. /<>/doc/examples_built/introduction_to_basic_tracking.rst:26: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:132: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:156: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:61: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:102: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:181: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:208: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:306: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:363: WARNING: Literal block expected; none found. /<>/doc/examples_built/piesno.rst:108: ERROR: Unexpected indentation. /<>/doc/examples_built/reconst_dki.rst:227: ERROR: Error in "figure" directive: invalid option block. .. figure:: Diffusion_tensor_measures_from_DTI_and_DKI.png :align: center **Diffusion tensor measures obtain from the diffusion tensor estimated from DKI (upper panels) and DTI (lower panels).**. /<>/doc/examples_built/reconst_dki.rst:274: ERROR: Error in "figure" directive: invalid option block. .. figure:: Kurtosis_tensor_standard_measures.png :align: center **Kurtosis tensor standard measures obtain from the kurtosis tensor.**. /<>/doc/examples_built/reconst_dsid.rst:24: ERROR: Unexpected indentation. /<>/doc/examples_built/reconst_shore_metrics.rst:131: WARNING: duplicate citation Descoteaux2011, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:135: WARNING: duplicate citation Wu2007, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:138: WARNING: duplicate citation Wu2008, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/segment_clustering_metrics.rst:167: WARNING: Duplicate explicit target name: "clustering-examples-minimumaveragedirectflipmetric". /<>/doc/examples_built/segment_clustering_metrics.rst:217: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_features.rst /<>/doc/examples_built/segment_quickbundles.rst:167: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_metrics.rst /<>/doc/examples_built/sfm_tracking.rst:179: WARNING: duplicate citation Rokem2015, other instance in /<>/doc/examples_built/sfm_reconst.rst /<>/doc/examples_built/simulate_multi_tensor.rst:89: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:120: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:181: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:194: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:49: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:99: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:116: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:134: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:241: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:258: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:271: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/affine_registration_3d.rst /<>/doc/examples_built/syn_registration_3d.rst:104: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:155: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:169: WARNING: duplicate citation Avants09, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/syn_registration_3d.rst:170: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/tracking_eudx_odf.rst:121: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_quickbundles.rst /<>/doc/examples_built/tracking_eudx_tensor.rst:160: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/tracking_eudx_odf.rst /<>/doc/examples_built/tracking_quick_start.rst:203: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/tracking_eudx_tensor.rst /<>/doc/examples_built/tracking_tissue_classifier.rst:148: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:216: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:335: WARNING: Literal block expected; none found. /<>/doc/examples_built/viz_bundles.rst:208: ERROR: Error in "figure" directive: invalid option block. .. figure:: bundle5.png :align: center **Color every streamline by the length of the streamline ** /<>/doc/examples_index.rst:81: WARNING: Title underline too short. Diffusion Kurtosis Imaging (NEW) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/examples_index.rst:81: WARNING: Title underline too short. 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[ 97%] examples_built/viz_advanced.py copying downloadable files... [100%] examples_built/reconst_csd.py copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 129 warnings. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/<>/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory debian/rules:75: recipe for target 'override_dh_auto_install' failed make[1]: [override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/<>/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude test_peaksFromModelParallel dipy; \ done I: Running Dipy unittests using python2.7 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:45: UserWarning: sklearn is not available, you can use 'nnls' method to fit the SparseFascicleModel warnings.warn(w) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/docstring_parser.py:145: UserWarning: Unknown section Yields warn("Unknown section %s" % key) Compares the output of the optimized function to compute the cross- ... ok Compares the output of the optimized function to compute the cross- ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_2d ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_expectmax.test_quantize_positive_2d ... ok dipy.align.tests.test_expectmax.test_quantize_positive_3d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_2d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_3d ... ok dipy.align.tests.test_imaffine.test_transform_centers_of_mass_3d ... ok dipy.align.tests.test_imaffine.test_transform_geometric_centers_3d ... ok dipy.align.tests.test_imaffine.test_transform_origins_3d ... ok dipy.align.tests.test_imaffine.test_affreg_all_transforms ... ok dipy.align.tests.test_imaffine.test_affreg_defaults ... ok dipy.align.tests.test_imaffine.test_mi_gradient ... ok dipy.align.tests.test_imaffine.test_affine_map ... ok dipy.align.tests.test_imaffine.test_MIMetric_invalid_params ... ok Test matrix multiplication using None as identity ... ok Test 2D DiffeomorphicMap ... ok Test simplification of 2D diffeomorphic maps ... ok Test simplification of 3D diffeomorphic maps ... ok Test exceptions from SyN ... ok Test direction and spacings from affine transforms ... ok Test 2D SyN with SSD metric, demons-like optimizer ... Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 2)>>0.995530 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 3)>>0.985771 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 2)>>0.998987 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 3)>>0.999780 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 2)>>0.999884 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 3)>>0.999642 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 2)>>0.994974 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 3)>>0.993367 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 2)>>0.997435 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 3)>>0.999297 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32])) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32])) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 148.967083 148.967083 297.934166 inf 2: 140.803789 140.803789 281.607578 inf 3: 132.911776 132.911776 265.823552 inf 4: 123.231998 123.231998 246.463996 inf 5: 114.722137 114.722137 229.444274 inf 6: 107.066896 107.066896 214.133792 inf 7: 102.035946 102.035946 204.071893 inf 8: 96.646769 96.646769 193.293539 inf 9: 89.674511 89.674511 179.349022 inf 10: 81.181186 81.181186 162.362373 inf 11: 75.765549 75.765549 151.531097 inf 12: 71.448292 71.448292 142.896584 0.00527899988007 13: 68.103006 68.103006 136.206013 0.00538550965452 14: 64.868980 64.868980 129.737959 0.00538218046988 15: 62.594987 62.594987 125.189974 0.00529894946063 16: 58.781530 58.781530 117.563061 0.00510649757567 17: 56.599954 56.599954 113.199908 0.00495917428724 18: 53.238663 53.238663 106.477326 0.00476453916401 19: 51.677319 51.677319 103.354637 0.00461570235729 20: 49.654630 49.654630 99.309260 0.00435744276489 21: 49.086610 49.086610 98.173219 0.00406536793558 22: 47.099344 47.099344 94.198688 0.00370474197522 23: 46.583474 46.583474 93.166947 0.00347969318934 24: 44.167168 44.167168 88.334336 0.00321263357 25: 44.104985 44.104985 88.209970 0.00306886709413 26: 41.818023 41.818023 83.636045 0.00281824246091 27: 42.280232 42.280232 84.560465 0.00269598499568 28: 40.373052 40.373052 80.746105 0.00241256012859 29: 40.929610 40.929610 81.859220 0.00229634961143 30: 38.793845 38.793845 77.587689 0.00204198505707 31: 39.270995 39.270995 78.541989 0.00201000574156 32: 37.058360 37.058360 74.116720 0.00184071553129 33: 37.857091 37.857091 75.714183 0.00187293199021 34: 35.392437 35.392437 70.784874 0.00169407995287 35: 36.346426 36.346426 72.692851 0.00176889705731 36: 33.366239 33.366239 66.732478 0.00161080093475 37: 34.626742 34.626742 69.253484 0.00180605132828 38: 31.657367 31.657367 63.314735 0.0016914977918 39: 33.291129 33.291129 66.582258 0.00193633290358 40: 30.898133 30.898133 61.796266 0.00178237272845 41: 32.607017 32.607017 65.214034 0.00191967089917 42: 30.491504 30.491504 60.983008 0.00165174903296 43: 32.109408 32.109408 64.218817 0.00168980865541 44: 29.815596 29.815596 59.631193 0.00135709332533 45: 31.568095 31.568095 63.136189 0.00139855118805 46: 29.123323 29.123323 58.246645 0.00103998280191 47: 30.770403 30.770403 61.540807 0.00112624088936 48: 28.418689 28.418689 56.837378 0.000819504033266 49: 29.972872 29.972872 59.945744 0.000995694884037 50: 27.698712 27.698712 55.397424 0.000767361992739 51: 29.073224 29.073224 58.146448 0.00102008209989 52: 26.763446 26.763446 53.526892 0.000858631818046 53: 28.288587 28.288587 56.577174 0.00114771595506 54: 25.746488 25.746488 51.492975 0.00097547543541 55: 26.884203 26.884203 53.768406 0.0012793516266 56: 24.718105 24.718105 49.436210 0.00116605752493 57: 25.901151 25.901151 51.802303 0.00147185096206 58: 23.963134 23.963134 47.926267 0.00132522826521 59: 25.099442 25.099442 50.198884 0.00158080808361 60: 23.193522 23.193522 46.387044 0.00139065320033 61: 24.386877 24.386877 48.773754 0.00160894539784 62: 22.611446 22.611446 45.222892 0.00136962709013 63: 23.876936 23.876936 47.753872 0.00153372548589 64: 22.131514 22.131514 44.263029 0.00123947671127 65: 23.519527 23.519527 47.039053 0.00137666140048 66: 21.741020 21.741020 43.482040 0.00102359729956 67: 23.119625 23.119625 46.239251 0.00116206991529 68: 21.285955 21.285955 42.571909 0.000844345283071 69: 22.573616 22.573616 45.147233 0.00102395857806 70: 20.836108 20.836108 41.672215 0.00075602273148 71: 22.050367 22.050367 44.100733 0.000960390222592 72: 20.359338 20.359338 40.718676 0.000728940860321 73: 21.396826 21.396826 42.793651 0.000967095161756 74: 19.820398 19.820398 39.640796 0.000789773021905 75: 20.854537 20.854537 41.709075 0.00104764785833 76: 19.226519 19.226519 38.453037 0.000871598365112 77: 20.281441 20.281441 40.562882 0.00114496640549 78: 18.781153 18.781153 37.562306 0.00095370490625 79: 19.785573 19.785573 39.571146 0.00119548391657 80: 18.142319 18.142319 36.284638 0.000977578291714 81: 18.813789 18.813789 37.627578 0.00124220312648 82: 17.671994 17.671994 35.343989 0.00111155995002 83: 19.449356 19.449356 38.898712 0.00133161841651 84: 17.055337 17.055337 34.110675 0.00090724353017 85: 16.572696 16.572696 33.145391 0.00119602806401 86: 17.331272 17.331272 34.662544 0.00136336453042 87: 17.745468 17.745468 35.490937 0.00136361313387 88: 16.648868 16.648868 33.297735 0.00107740755087 89: 18.029414 18.029414 36.058827 0.00118701273421 90: 16.138845 16.138845 32.277689 0.000748281690963 91: 16.351669 16.351669 32.703337 0.000946490666985 92: 16.237452 16.237452 32.474905 0.000876768624823 93: 17.482327 17.482327 34.964655 0.000941058631939 94: 15.747353 15.747353 31.494705 0.000538321623884 95: 16.277016 16.277016 32.554032 0.000735150892326 96: 15.817792 15.817792 31.635583 0.000505504944532 97: 17.445416 17.445416 34.890832 0.000641647468135 98: 15.390006 15.390006 30.780012 0.000337273496377 99: 15.634715 15.634715 31.269429 0.000539913031402 100: 15.865204 15.865204 31.730407 0.000543157147974 101: 16.971661 16.971661 33.943322 0.000556764495422 102: 15.544037 15.544037 31.088074 7.6766964816e-05 Optimizing level 2 0: 82.844471 82.844471 165.688942 inf 1: 68.120114 68.120114 136.240228 inf 2: 61.459507 61.459507 122.919014 inf 3: 55.603287 55.603287 111.206575 inf 4: 49.339565 49.339565 98.679130 inf 5: 43.843783 43.843783 87.687566 inf 6: 38.174086 38.174086 76.348171 inf 7: 33.032477 33.032477 66.064955 inf 8: 29.103317 29.103317 58.206633 inf 9: 25.819876 25.819876 51.639752 inf 10: 23.055481 23.055481 46.110961 inf 11: 20.679177 20.679177 41.358354 inf 12: 18.991290 18.991290 37.982579 0.00940663911582 13: 17.612077 17.612077 35.224153 0.0091906439228 14: 16.280135 16.280135 32.560270 0.00904239811595 15: 14.445076 14.445076 28.890152 0.00876415654088 16: 12.957554 12.957554 25.915108 0.00847347536568 17: 12.313899 12.313899 24.627798 0.00819608889951 18: 12.201598 12.201598 24.403195 0.00778549802713 19: 10.706605 10.706605 21.413210 0.00720138647586 20: 12.330187 12.330187 24.660375 0.00688499527239 21: 9.785194 9.785194 19.570388 0.00591080845698 22: 10.252490 10.252490 20.504979 0.00565664241603 23: 9.877996 9.877996 19.755993 0.00510022837953 24: 10.310660 10.310660 20.621320 0.00459181150047 25: 8.693336 8.693336 17.386673 0.00380800884601 26: 10.060590 10.060590 20.121180 0.00361100288754 27: 8.069276 8.069276 16.138551 0.00274423987972 28: 8.630954 8.630954 17.261909 0.00287931635688 29: 7.602213 7.602213 15.204426 0.00274439212979 30: 8.998320 8.998320 17.996640 0.0030089404518 31: 6.537605 6.537605 13.075211 0.00236943787577 32: 7.297023 7.297023 14.594047 0.00312804990293 33: 7.274075 7.274075 14.548149 0.0028733977654 34: 8.144336 8.144336 16.288671 0.0029288443956 35: 6.432761 6.432761 12.865522 0.00223153543419 36: 6.678328 6.678328 13.356656 0.00250855642119 37: 6.812662 6.812662 13.625324 0.00231328240372 38: 7.320413 7.320413 14.640826 0.00223122953229 39: 6.314802 6.314802 12.629604 0.00138697241827 40: 6.644665 6.644665 13.289329 0.0016232532083 41: 6.782917 6.782917 13.565834 0.00135291374063 42: 6.944910 6.944910 13.889820 0.00118021795187 43: 6.897889 6.897889 13.795777 0.000486432435941 44: 7.143819 7.143819 14.287638 0.000515194571916 45: 6.796317 6.796317 13.592634 0.000163680759214 46: 6.914472 6.914472 13.828944 8.10696250447e-05 Optimizing level 1 0: 55.483974 55.483974 110.967948 inf 1: 32ok Test 2D SyN with SSD metric, Gauss-Newton optimizer ... .742836 32.742836 65.485673 inf 2: 24.460964 24.460964 48.921927 inf 3: 20.457737 20.457737 40.915473 inf 4: 19.540958 19.540958 39.081916 inf 5: 19.266420 19.266420 38.532841 inf 6: 19.142562 19.142562 38.285124 inf 7: 19.507863 19.507863 39.015725 inf 8: 19.288092 19.288092 38.576183 inf 9: 20.473081 20.473081 40.946162 inf 10: 18.804245 18.804245 37.608490 inf 11: 20.228041 20.228041 40.456083 inf 12: 18.484346 18.484346 36.968691 0.00458783132678 13: 20.813856 20.813856 41.627712 0.00197608428921 14: 17.963915 17.963915 35.927830 0.000387389669082 15: 18.724214 18.724214 37.448427 0.000266289756523 16: 18.733435 18.733435 37.466870 0.000293459611875 17: 18.797480 18.797480 37.594961 0.000373803992515 18: 18.167999 18.167999 36.335997 0.000430562412408 19: 19.923407 19.923407 39.846814 0.00061267655984 20: 17.923571 17.923571 35.847143 0.000288409102969 21: 21.292972 21.292972 42.585944 0.00049576787007 22: 17.725701 17.725701 35.451402 -0.000262523023347 Optimizing level 0 0: 92.967884 92.967884 185.935768 inf 1: 74.762115 74.762115 149.524230 inf 2: 68.716232 68.716232 137.432465 inf 3: 64.340519 64.340519 128.681039 inf 4: 61.725480 61.725480 123.450961 inf 5: 58.457658 58.457658 116.915316 inf 6: 56.976401 56.976401 113.952803 inf 7: 54.314718 54.314718 108.629435 inf 8: 53.170677 53.170677 106.341353 inf 9: 51.254170 51.254170 102.508341 inf 10: 50.032752 50.032752 100.065504 inf 11: 49.471229 49.471229 98.942458 inf 12: 47.583009 47.583009 95.166019 0.00372106553979 13: 47.338730 47.338730 94.677461 0.00298626040055 14: 45.821800 45.821800 91.643600 0.00259895669698 15: 45.734851 45.734851 91.469702 0.0023635492976 16: 44.312135 44.312135 88.624269 0.00211852760271 17: 44.457572 44.457572 88.915144 0.00195627736145 18: 43.226862 43.226862 86.453724 0.00176137532044 19: 43.322958 43.322958 86.645916 0.0016265499598 20: 42.035803 42.035803 84.071605 0.00147090121951 21: 42.424518 42.424518 84.849035 0.00139316117424 22: 41.371239 41.371239 82.742478 0.00125235814602 23: 41.834709 41.834709 83.669418 0.00119116695041 24: 40.295999 40.295999 80.591999 0.00102184645223 Static-Reference Residual error: 0.006216 (0.000204) Moving-Reference Residual error :0.005740 (0.000180) Final residual error: 0.141575 (0.099656) Pre-align: [[ 1. 0. 0.] [ 0. 1. 0.] [ 0. 0. 1.]] Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32])) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32])) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 140.425137 140.425137 280.850273 inf 2: 122.632717 122.632717 245.265433 inf 3: 107.533624 107.533624 215.067248 inf 4: 95.957127 95.957127 191.914253 inf 5: 82.847331 82.847331 165.694663 inf 6: 71.216589 71.216589 142.433178 inf 7: 63.804336 63.804336 127.608672 inf 8: 54.921843 54.921843 109.843686 inf 9: 45.509380 45.509380 91.018760 inf 10: 39.685490 39.685490 79.370980 inf 11: 35.088915 35.088915 70.177829 inf 12: 29.560406 29.560406 59.120811 0.010252829077 13: 25.559514 25.559514 51.119027 0.0104618755948 14: 22.480701 22.480701 44.961402 0.0106048525408 15: 19.647836 19.647836 39.295672 0.0107012313567 16: 17.523070 17.523070 35.046140 0.0107498586809 17: 15.908172 15.908172 31.816345 0.0106623349075 18: 14.573980 14.573980 29.147960 0.010479013914 19: 12.763208 12.763208 25.526415 0.0101981845737 20: 11.607060 11.607060 23.214120 0.00984243504571 21: 11.126164 11.126164 22.252327 0.00943413139255 22: 10.633993 10.633993 21.267985 0.00896270115565 23: 10.981419 10.981419 21.962837 0.00834213382859 24: 12.486148 12.486148 24.972296 0.00733610524607 25: 14.950756 14.950756 29.901511 0.0057713218819 26: 12.711562 12.711562 25.423124 0.0034201470646 27: 13.592291 13.592291 27.184581 0.00206555283763 28: 12.457476 12.457476 24.914953 0.000649771248252 29: 13.910016 13.910016 27.820032 -5.3336298664e-05 Optimizing level 2 0: 62.012023 62.012023 124.024046 inf 1: 57.608695 57.608695 115.217391 inf 2: 50.163408 50.163408 100.326816 inf 3: 48.258825 48.258825 96.517651 inf 4: 42.910077 42.910077 85.820154 inf 5: 43.092702 43.092702 86.185405 inf 6: 37.356138 37.356138 74.712277 inf 7: 39.345178 39.345178 78.690355 inf 8: 32.612040 32.612040 65.224081 inf 9: 33.950967 33.950967 67.901934 inf 10: 30.066702 30.066702 60.133404 inf 11: 32.152520 32.152520 64.305040 inf 12: 27.291334 27.291334 54.582667 0.00495239461651 13: 28.884324 28.884324 57.768648 0.00480841994351 14: 25.574754 25.574754 51.149509 0.00427792990101 15: 28.284757 28.284757 56.569514 0.00423219213981 16: 21.607941 21.607941 43.215882 0.00358290988315 17: 24.990070 24.990070 49.980140 0.00397218782635 18: 19.062726 19.062726 38.125451 0.00348687745235 19: 23.398149 23.398149 46.796297 0.00406514000641 20: 16.343528 16.343528 32.687056 0.00343219384356 21: 22.601096 22.601096 45.202192 0.00428592192363 22: 15.084519 15.084519 30.169038 0.00349068646195 23: 18.700223 18.700223 37.400447 0.00427820082276 24: 15.670585 15.670585 31.341170 0.00379065596597 25: 18.931024 18.931024 37.862048 0.0040920062772 26: 12.530558 12.530558 25.061117 0.00322803496567 27: 19.797907 19.797907 39.595814 0.00398595808617 28: 11.037995 11.037995 22.075989 0.00235298241196 29: 17.174187 17.174187 34.348374 0.00353004137073 30: 12.627387 12.627387 25.254775 0.0023654053551 31: 19.203049 19.203049 38.406099 0.00297343459885 32: 11.237931 11.237931 22.475863 0.00103976994607 33: 18.539458 18.539458 37.078915 0.00225875135923 34: 11.250667 11.250667 22.501333 0.000361001600042 35: 18.779912 18.779912 37.559824 0.00163516655765 36: 10.812126 10.812126 21.624253 -1.71116176228e-05 Optimizing level 1 0: 102.159395 102.159395 204.318791 inf 1: 38.538488 38.538488 77.076976 inf 2: 22.870012 22.870012 45.740024 inf 3: 41.167880 41.167880 82.335761 inf 4: 19.458542 19.458542 38.917084 inf 5: 42.946504 42.946504 85.893007 inf 6: 23.459028 23.459028 46.918055 inf 7: 46.032890 46.032890 92.065779 inf 8: 24.332195 24.332195 48.664390 inf 9: 46.758303 46.758303 93.516606 inf 10: 24.724342 24.724342 49.448683 inf 11: 48.133452 48.133452 96.266905 inf 12: 25.054444 25.054444 50.108887 0.00180557220616 13: 48.975072 48.975072 97.950144 -0.000476630064391 Optimizing level 0 0: 112.250929 112.250929 224.501859 inf 1: 71.817064 71.817064 143.634128 inf 2: 82.073682 82.073682 164.147364 inf 3: 65.545791 65.545791 1ok Test 3D SyN with SSD metric, demons-like optimizer ... ok Test 3D SyN with SSD metric, Gauss-Newton optimizer ... 31.091581 inf 4: 83.595213 83.595213 167.190425 inf 5: 66.425310 66.425310 132.850621 inf 6: 79.385832 79.385832 158.771664 inf 7: 60.832196 60.832196 121.664392 inf 8: 75.885633 75.885633 151.771266 inf 9: 58.115732 58.115732 116.231465 inf 10: 73.245958 73.245958 146.491917 inf 11: 56.244769 56.244769 112.489538 inf 12: 71.479211 71.479211 142.958421 0.00268127338637 13: 55.068711 55.068711 110.137422 0.0012310962322 14: 70.612433 70.612433 141.224865 0.00191119671472 15: 54.001589 54.001589 108.003178 0.00105747478492 16: 69.660757 69.660757 139.321514 0.0018093742514 17: 53.491570 53.491570 106.983141 0.000770893359185 18: 68.957136 68.957136 137.914272 0.00140431073811 19: 53.360821 53.360821 106.721642 0.000384920192061 20: 67.364421 67.364421 134.728841 0.00111124821321 21: 53.865511 53.865511 107.731023 0.000207882927452 22: 65.605660 65.605660 131.211321 0.000907702549183 23: 54.682446 54.682446 109.364891 0.000136562723832 24: 64.126828 64.126828 128.253656 0.000767791843949 Static-Reference Residual error: 0.006348 (0.000205) Moving-Reference Residual error :0.006518 (0.000255) Final residual error: 0.129906 (0.082716) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 30])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 30])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 156.113535 156.113535 312.227070 inf 1: 123.101970 123.101970 246.203940 inf 2: 94.813457 94.813457 189.626914 inf 3: 69.699435 69.699435 139.398871 inf 4: 47.676754 47.676754 95.353509 inf 5: 30.881051 30.881051 61.762102 inf 6: 17.776930 17.776930 35.553860 inf 7: 8.918014 8.918014 17.836029 inf 8: 4.241232 4.241232 8.482464 inf 9: 4.299631 4.299631 8.599262 inf Optimizing level 0 0: 77.424529 77.424529 154.849058 inf 1: 61.312644 61.312644 122.625289 inf 2: 53.181795 53.181795 106.363589 inf 3: 48.402473 48.402473 96.804945 inf 4: 46.096480 46.096480 92.192959 inf 5: 44.012536 44.012536 88.025071 inf 6: 44.832914 44.832914 89.665828 inf 7: 40.529286 40.529286 81.058572 inf 8: 42.314743 42.314743 84.629486 inf 9: 40.040125 40.040125 80.080250 inf Static-Reference Residual error: 0.004035 (0.000026) Moving-Reference Residual error :0.003945 (0.000028) Final residual error: 0.004809 (0.000069) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 35])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 35])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0ok Test 2D SyN with CC metric ... ok Test 3D SyN with CC metric ... ., 0.])) ('Domain shape: ', array([32, 32, 18])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 174.160236 174.160236 348.320472 inf 1: 129.301704 129.301704 258.603408 inf 2: 90.003685 90.003685 180.007370 inf 3: 62.023355 62.023355 124.046710 inf 4: 44.031650 44.031650 88.063299 inf 5: 30.138085 30.138085 60.276171 inf 6: 19.769585 19.769585 39.539169 inf 7: 12.200860 12.200860 24.401720 inf 8: 7.030166 7.030166 14.060332 inf 9: 3.932361 3.932361 7.864721 inf Optimizing level 0 0: 50.431378 50.431378 100.862756 inf 1: 42.406364 42.406364 84.812728 inf 2: 34.634418 34.634418 69.268836 inf 3: 27.500056 27.500056 55.000112 inf 4: 22.276238 22.276238 44.552475 inf 5: 18.144726 18.144726 36.289452 inf 6: 14.831816 14.831816 29.663631 inf 7: 12.606340 12.606340 25.212681 inf 8: 14.069035 14.069035 28.138070 inf 9: 13.291495 13.291495 26.582989 inf Static-Reference Residual error: 0.002930 (0.000043) Moving-Reference Residual error :0.002968 (0.000045) Final residual error: 0.004096 (0.000111) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Optimizing level 1 0: -2470.850522 -2470.850522 -4941.701045 inf 1: -2809.035391 -2809.035391 -5618.070783 inf 2: -3097.929180 -3097.929180 -6195.858360 inf 3: -3314.948446 -3314.948446 -6629.896893 inf 4: -3487.392000 -3487.392000 -6974.784000 inf 5: -3687.198100 -3687.198100 -7374.396200 inf 6: -3901.419800 -3901.419800 -7802.839600 inf 7: -4062.786802 -4062.786802 -8125.573603 inf 8: -4204.035022 -4204.035022 -8408.070044 inf 9: -4317.120683 -4317.120683 -8634.241367 inf 10: -4400.328948 -4400.328948 -8800.657896 inf 11: -4472.480246 -4472.480246 -8944.960493 inf 12: -4533.762530 -4533.762530 -9067.525059 0.00381066805446 13: -4576.180550 -4576.180550 -9152.361100 0.00317135627435 14: -4601.501231 -4601.501231 -9203.002462 0.00264119987365 Optimizing level 0 0: -15604.348537 -15604.348537 -31208.697075 inf 1: -15735.173699 -15735.173699 -31470.347397 inf 2: -15827.193833 -15827.193833 -31654.387667 inf 3: -15919.901145 -15919.901145 -31839.802290 inf 4: -15989.430778 -15989.430778 -31978.861557 inf Static-Reference Residual error: 0.002058 (0.000017) Moving-Reference Residual error :0.002026 (0.000016) Final residual error: 0.002855 (0.000047) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Static scale space:ok Test 3D SyN with EM metric, Gauss-Newton optimizer ... ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Optimizing level 1 0: -23248.088746 -23248.088746 -46496.177491 inf 1: -24228.695032 -24228.695032 -48457.390065 inf 2: -24748.418933 -24748.418933 -49496.837867 inf 3: -25207.177592 -25207.177592 -50414.355185 inf 4: -25734.845832 -25734.845832 -51469.691664 inf 5: -26085.479821 -26085.479821 -52170.959642 inf 6: -26361.580823 -26361.580823 -52723.161646 inf 7: -26650.961928 -26650.961928 -53301.923856 inf 8: -26911.378123 -26911.378123 -53822.756245 inf 9: -27130.124846 -27130.124846 -54260.249692 inf 10: -27337.461196 -27337.461196 -54674.922392 inf 11: -27531.970077 -27531.970077 -55063.940155 inf 12: -27705.774955 -27705.774955 -55411.549911 0.00107512425394 13: -27832.013021 -27832.013021 -55664.026043 0.000914918337193 14: -27944.459280 -27944.459280 -55888.918561 0.000800532590655 15: -28027.188364 -28027.188364 -56054.376727 0.000698199647744 16: -28066.925692 -28066.925692 -56133.851383 0.000604098425174 17: -28099.282778 -28099.282778 -56198.565555 0.000521864903135 18: -28124.059153 -28124.059153 -56248.118306 0.000442750399418 19: -28146.101818 -28146.101818 -56292.203637 0.000365521686966 Optimizing level 0 0: -147115.029256 -147115.029256 -294230.058513 inf 1: -150225.179820 -150225.179820 -300450.359641 inf 2: -152569.729748 -152569.729748 -305139.459495 inf 3: -154054.009680 -154054.009680 -308108.019361 inf 4: -155305.652754 -155305.652754 -310611.305507 inf Static-Reference Residual error: 0.002798 (0.000057) Moving-Reference Residual error :0.003039 (0.000066) Final residual error: 0.005512 (0.000291) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 346.480775 342.803728 689.284503 inf 1: 291.387629 292.951455 584.339084 inf 2: 251.682942 253.268585 504.951528 inf 3: 220.268379 218.766441 439.034821 inf 4: 186.456667 188.759555 375.216221 inf 5: 156.027206 156.095939 312.123145 inf 6: 128.952323 129.553045 258.505368 inf 7: 107.871485 109.416212 217.287697 inf 8: 93.687720 94.423634 188.111354 inf 9: 75.719528 75.959777 151.679305 inf 10: 60.603728 59.926950 120.530678 inf 11: 47.674940 46.755748 94.430688 inf 12: 35.044059 34.905537 69.949597 0.0124415020675 13: 25.194923 24.931808 50.126732 0.0129670271344 14: 17.063045 16.554034 33.617079 0.0136536846628 15: 10.101709 9.922347 20.024056 0.0144692978851 16: 5.069973 4.947817 10.017790 0.0154226233447 17: 2.252428 2.230622 4.483050 0.0165417608464 18: 1.471611 1.455456 2.927067 0.0177808615285 19: 1.014883 0.997455 2.012338 0.0189586516074 Optimizing level 0 0: 74.174105 47.8259ok Test 2D SyN with EM metric, Gauss-Newton optimizer ... 85 122.000090 inf 1: 59.078242 41.799261 100.877503 inf 2: 41.027989 34.696090 75.724079 inf 3: 33.356178 28.627192 61.983369 inf 4: 28.613191 24.218729 52.831920 inf Static-Reference Residual error: 0.004747 (0.000101) Moving-Reference Residual error :0.004916 (0.000105) Final residual error: 0.004626 (0.000181) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.260563 25.935777 51.196341 inf 1: 24.291909 24.782446 49.074355 inf 2: 21.905502 19.816674 41.722175 inf 3: 16.319558 16.287693 32.607251 inf 4: 15.510241 15.323561 30.833801 inf 5: 12.833022 10.664176 23.497198 inf 6: 6.911958 6.402278 13.314236 inf 7: 4.227105 4.539786 8.766891 inf 8: 2.875194 2.799543 5.674737 inf 9: 1.028632 1.103500 2.132132 inf 10: 0.385111 0.588306 0.973417 inf 11: 0.378783 0.469470 0.848253 inf 12: 0.315450 0.249531 0.564981 0.0187608292452 13: 0.277854 0.216360 0.494215 0.0200900051085 14: 0.176018 0.178722 0.354740 0.021042563693 15: 0.226428 0.172354 0.398782 0.0217646576751 16: 0.193429 0.146379 0.339808 0.0221198183291 17: 0.210851 0.177178 0.388029 0.021910199917 18: 0.168833 0.142166 0.310999 0.0208909271489 19: 0.213690 0.232610 0.446300 0.019370254433 20: 0.206625 0.174062 0.380687 0.0157523208246 21: 0.204801 0.166812 0.371613 0.0097824020566 22: 0.181652 0.149366 0.331018 0.00556522091684 23: 0.191620 0.185595 0.377215 0.00392923926685 24: 0.139017 0.145247 0.284264 0.00173381961047 25: 0.148625 0.144926 0.293551 0.00175008710592 26: 0.128109 0.135598 0.263706 0.00175560083872 27: 0.174627 0.149750 0.324377 0.00267066204631 28: 0.142036 0.134526 0.276562 0.00226999175811 29: 0.122272 0.137869 0.260141 0.00275268243216 30: 0.163944 0.168988 0.332932 0.00299674337458 31: 0.167924 0.167596 0.335521 0.00237499271178 32: 0.069629 0.070374 0.140003 0.000992499624133 33: 0.239107 0.184427 0.423534 0.00291081159258 34: 0.079618 0.076774 0.156393 3.45886473741e-05 35: 0.173560 0.134339 0.307899 0.00193756509626 36: 0.112290 0.111505 0.223795 0.000682447101412 37: 0.188214 0.174066 0.362280 0.00149882678269 38: 0.163520 0.150707 0.314228 -0.000178846953538 Optimizing level 1 0: 1.477601 1.834135 3.311737 inf 1: 0.613078 0.678346 1.291423 inf 2: 0.284192 0.367917 0.652109 inf 3: 0.187872 0.262230 0.450102 inf 4: 0.249391 0.355520 0.604910 inf 5: 0.167028 0.262589 0.429618 inf 6: 0.202379 0.308202 0.510581 inf 7: 0.200272 0.280100 0.480372 inf 8: 0.154977 0.242965 0.397942 inf 9: 0.198615 0.255643 0.454258 inf 10: 0.230596 0.326603 0.557198 inf 11: 0.160809 0.252730 0.413539 inf 12: 0.192483 0.314786 0.507269 0.010262032534 13: 0.171594 0.260822 0.432415 0.00380157818974 14: 0.203905 0.316645 0.520550 0.00130883853748 15: 0.162604 0.254376 0.4169ok Test 3D SyN with EM metric, demons-like optimizer ... ok Test 2D SyN with EM metric, demons-like optimizer ... 80 6.17547123078e-05 16: 0.169782 0.300820 0.470602 0.000697374991694 17: 0.204173 0.311261 0.515435 5.31761892415e-05 18: 0.163494 0.293641 0.457135 -0.000247027324468 Optimizing level 0 0: 3.155639 6.014884 9.170523 inf 1: 2.135238 4.766694 6.901932 inf 2: 1.712096 4.452865 6.164961 inf 3: 1.444777 3.842037 5.286814 inf 4: 1.168602 3.369926 4.538528 inf 5: 1.121400 3.355414 4.476814 inf 6: 1.195686 3.274841 4.470528 inf 7: 0.994113 3.214573 4.208687 inf 8: 1.184527 2.862584 4.047111 inf 9: 1.237003 3.063938 4.300940 inf Static-Reference Residual error: 0.004514 (0.000099) Moving-Reference Residual error :0.006396 (0.000211) Final residual error: 0.007031 (0.000277) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21])) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11])) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 342.803728 346.480775 689.284503 inf 1: 294.194338 290.386191 584.580529 inf 2: 251.942413 258.204845 510.147257 inf 3: 213.718215 213.491909 427.210124 inf 4: 178.992199 177.054273 356.046471 inf 5: 145.964495 143.912717 289.877212 inf 6: 117.367108 114.623371 231.990480 inf 7: 93.562755 92.126507 185.689261 inf 8: 71.098561 71.701166 142.799727 inf 9: 54.763405 55.334424 110.097829 inf 10: 41.618412 42.350966 83.969378 inf 11: 31.472175 31.934961 63.407137 inf 12: 23.208258 23.210836 46.419094 0.0143712885313 13: 17.189468 17.088833 34.278301 0.0150218628492 14: 13.233163 12.934221 26.167384 0.0156621543294 15: 10.062364 9.984529 20.046893 0.0161699337205 16: 7.582229 7.566663 15.148892 0.0165886979125 17: 5.873088 5.848606 11.721694 0.0169092274948 18: 5.121109 5.123322 10.244431 0.017127673121 19: 4.643874 4.618437 9.262311 0.0171409731299 Optimizing level 0 0: 190.170283 232.805430 422.975713 inf 1: 164.591547 208.538871 373.130418 inf 2: 153.523206 186.249106 339.772312 inf 3: 142.492094 172.226443 314.718538 inf 4: 134.334164 153.192085 287.526249 inf Static-Reference Residual error: 0.006296 (0.000138) Moving-Reference Residual error :0.006979 (0.000175) Final residual error: 0.005509 (0.000413) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256])) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shapok dipy.align.tests.test_metrics.test_exceptions ... ok dipy.align.tests.test_metrics.test_EMMetric_image_dynamics ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_parzenhist.test_cubic_spline ... ok dipy.align.tests.test_parzenhist.test_cubic_spline_derivative ... ok dipy.align.tests.test_parzenhist.test_parzen_joint_histogram ... ok dipy.align.tests.test_parzenhist.test_parzen_densities ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_dense ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_sparse ... ok dipy.align.tests.test_parzenhist.test_sample_domain_regular ... ok dipy.align.tests.test_parzenhist.test_exceptions ... ok dipy.align.tests.test_reslice.test_resample ... /usr/lib/python2.7/dist-packages/scipy/ndimage/interpolation.py:430: UserWarning: The behaviour of affine_transform with a one-dimensional array supplied for the matrix parameter has changed in scipy 0.18.0. "The behaviour of affine_transform with a one-dimensional " e: ', array([128, 128])) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64])) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.935777 25.260563 51.196340 inf 1: 27.037444 20.694161 47.731605 inf 2: 13.784599 17.400170 31.184769 inf 3: 9.943231 10.510352 20.453583 inf 4: 6.479765 6.347510 12.827275 inf 5: 3.138036 3.538555 6.676591 inf 6: 1.532194 1.621278 3.153472 inf 7: 0.446067 0.399313 0.845380 inf 8: 0.583351 0.477470 1.060821 inf 9: 0.266033 0.259799 0.525833 inf 10: 0.371924 0.350806 0.722730 inf 11: 0.283530 0.247474 0.531004 inf 12: 0.390005 0.335070 0.725075 0.022105666329 13: 0.257404 0.309310 0.566714 0.0222740837463 14: 0.361977 0.354586 0.716564 0.0218649989799 15: 0.283879 0.263841 0.547720 0.0205758048888 16: 0.338481 0.338796 0.677277 0.0182851829331 17: 0.243377 0.273285 0.516661 0.0134650633629 18: 0.366438 0.300859 0.667297 0.00775868445447 19: 0.240609 0.259311 0.499920 0.00206424400761 20: 0.313077 0.325632 0.638709 0.00223166940837 21: 0.252695 0.254945 0.507640 0.000519703258837 22: 0.298032 0.316239 0.614271 0.00145529797612 23: 0.235446 0.276002 0.511448 0.000782973551759 24: 0.356744 0.346785 0.703530 0.001505628349 25: 0.259406 0.256541 0.515947 4.22152051242e-06 Optimizing level 1 0: 2.950720 2.337735 5.288455 inf 1: 1.651256 1.349698 3.000953 inf 2: 0.978115 0.760163 1.738278 inf 3: 0.790510 0.634077 1.424586 inf 4: 0.672293 0.519591 1.191884 inf 5: 0.657691 0.527421 1.185113 inf 6: 0.622871 0.497417 1.120288 inf 7: 0.619107 0.443264 1.062371 inf 8: 0.619072 0.438562 1.057634 inf 9: 0.563152 0.448253 1.011405 inf 10: 0.554405 0.430310 0.984715 inf 11: 0.655662 0.483635 1.139297 inf 12: 0.527491 0.396651 0.924142 0.0090064212874 13: 0.737689 0.556839 1.294528 0.00545306326781 14: 0.565609 0.409699 0.975308 0.00177170347507 15: 0.699229 0.518343 1.217572 0.00108968287617 16: 0.597859 0.431830 1.029689 -0.000181669569391 Optimizing level 0 0: 7.930473 4.096100 12.026574 inf 1: 6.012558 2.823702 8.836260 inf 2: 5.036567 2.097261 7.133827 inf 3: 4.538623 1.906303 6.444926 inf 4: 4.705374 1.814206 6.519580 inf 5: 4.348109 1.692144 6.040253 inf 6: 3.663005 1.673572 5.336577 inf 7: 3.363903 1.578398 4.942300 inf 8: 3.282773 1.626761 4.909534 inf 9: 3.211800 1.580829 4.792628 inf Static-Reference Residual error: 0.003703 (0.000049) Moving-Reference Residual error :0.003852 (0.000051) Final residual error: 0.004433 (0.000087) ok dipy.align.tests.test_scalespace.test_scale_space ... ok dipy.align.tests.test_scalespace.test_scale_space_exceptions ... ok dipy.align.tests.test_streamlinear.test_rigid_parallel_lines ... ok dipy.align.tests.test_streamlinear.test_rigid_real_bundles ... ok dipy.align.tests.test_streamlinear.test_rigid_partial_real_bundles ... ok dipy.align.tests.test_streamlinear.test_stream_rigid ... ok dipy.align.tests.test_streamlinear.test_min_vs_min_fast_precision ... ok dipy.align.tests.test_streamlinear.test_same_number_of_points ... ok dipy.align.tests.test_streamlinear.test_efficient_bmd ... ok dipy.align.tests.test_streamlinear.test_openmp_locks ... ok dipy.align.tests.test_streamlinear.test_from_to_rigid ... ok dipy.align.tests.test_streamlinear.test_matrix44 ... ok dipy.align.tests.test_streamlinear.test_abstract_metric_class ... ok dipy.align.tests.test_streamlinear.test_evolution_of_previous_iterations ... ok dipy.align.tests.test_streamlinear.test_similarity_real_bundles ... ok dipy.align.tests.test_streamlinear.test_affine_real_bundles ... (2, ) (3, ) (2, ) (3, ) [ 88.12210846 109.13088989 81.60664368] 7.98038710642 23 196 [[ 9.99575809e-01 -2.24408034e-02 -1.85637633e-02 -9.17360679e-01] [ 2.91181600e-02 7.82729959e-01 6.21679937e-01 4.98753583e-01] [ 5.79416429e-04 -6.21956769e-01 7.83051366e-01 -1.17085195e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] fun: 7.9803869752714425 hess_inv: <6x6 LbfgsInvHessProduct with dtype=float64> jac: array([ 4.52970994e-06, 2.48867593e-04, 1.42996726e-05, 4.26325641e-06, 1.78523862e-05, 2.04281037e-06]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 217 nit: 28 status: 0 success: True x: array([ -0.91734365, 0.49887499, -1.17085194, 2.01199544, -40.01571915, 0.37544169]) 0.0001 0.0001 fun: 4.7828792560742889e-07 hess_inv: <12x12 LbfgsInvHessProduct with dtype=float64> jac: array([ -5.67093664e-04, -4.91401362e-04, -4.58929156e-04, -3.15521347e-05, 4.75998274e-05, 1.47782464e-05, 4.40070103e-04, -2.11233809e-04, -9.95017727e-04, -7.46044199e-04, 1.04640622e-03, 4.98022282e-04]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 2431 nit: 175 status: 0 success: True x: array([ -2.24380499e-04, -1.89651762e-04, -2.50562002e-04, 2.42804324e+00, -1.21193154e+01, -1.14450734e+01, 8.13674825e-01, 9.05581052e-01, 1.02808090e+00, -3.93383919e-02, -8.67418323e-02, -1.72455351e-02]) direc: array([[ 1.50879697e-06, 1.01049136e-07, 3.92802800e-07, -1.79307137e-05, -1.45636222e-05, 7.23157991e-06, 5.20353278e-07, 1.55714537e-09, -2.73360282e-07, 3.02690653e-07, 3.80957287e-07, -4.96762959e-08], [ 8.99211297e-07, 4.89843899e-07, 8.11109034e-08, 1.37524864e-05, -1.58907947e-05, 1.82567461e-05, -3.79665376e-07, 1.72251754e-07, 1.69151827e-07, 4.85185337e-08, 7.01085038e-08, 4.32158776e-07], [ 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -4.41374614e-08, 5.60365816e-07, 4.22799206e-08, 3.87030551e-06, -1.52700791e-06, 2.67266309e-05, 4.01470525e-07, 1.72992304e-07, 8.29262978e-08, 6.92886631e-07, 2.02742914e-07, 9.11303325e-08], [ 7.11882922e-08, -5.00721662e-07, -1.61290607e-07, 1.50359794e-06, -2.99786686e-06, 6.76392389e-06, -2.13861946e-08, 6.85791721e-08, 1.34254533e-08, 1.00732780e-07, 4.96742897e-08, 2.09069876e-08], [ -4.16210241e-05, -3.15080695e-05, -6.96377363e-07, 1.91965627e-03, -3.28087096e-03, -1.56979416e-03, 3.82644810e-05, -8.06421680e-06, 2.71515162e-05, -2.14013652e-07, 7.58395784e-05, 2.91429851e-05], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -9.91041708e-07, -1.29317217e-06, 4.21888481e-07, -1.00102602e-05, 2.18774ok dipy.align.tests.test_streamlinear.test_vectorize_streamlines ... ok dipy.align.tests.test_streamlinear.test_x0_input ... ok dipy.align.tests.test_streamlinear.test_compose_decompose_matrix44 ... ok dipy.align.tests.test_streamlinear.test_cascade_of_optimizations_and_threading ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_3d ... ok dipy.align.tests.test_sumsqdiff.test_solve_2d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_solve_3d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_transforms.test_number_of_parameters ... ok dipy.align.tests.test_transforms.test_param_to_matrix_2d ... ok dipy.align.tests.test_transforms.test_param_to_matrix_3d ... ok dipy.align.tests.test_transforms.test_identity_parameters ... ok dipy.align.tests.test_transforms.test_jacobian_functions ... ok dipy.align.tests.test_transforms.test_invalid_transform ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_2d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_3d ... ok dipy.align.tests.test_vector_fields.test_circle ... ok dipy.align.tests.test_vector_fields.test_sphere ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_2d ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests 2D affine transform functions against scipy implementation ... ok Tests 3D affine transform functions against scipy implementation ... ok Creates two random displacement field that exactly map pixels from an input ... ok Creates two random displacement field that exactly map pixels from an input ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_3d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_2d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_random_vector_fields ... ok dipy.align.tests.test_vector_fields.test_gradient_2d ... ok dipy.align.tests.test_vector_fields.test_gradient_3d ... ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:128: RuntimeWarning: invalid value encountered in double_scalars theta = np.arccos(z / r) dipy.core.tests.test_geometry.test_sphere_cart((array(0.0), array(0.0), array(0.0)), (0.0, 0.0, 0.0)) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.076583261948278414, 0.0765832619482784) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ]), array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ])) ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_geometry.test_vec2vec_rotmat ... ok dipy.core.tests.test_geometry.test_compose_transformations ... ok dipy.core.tests.test_geometry.test_compose_decompose_matrix ... ok dipy.core.tests.test_geometry.test_perpendicular_directions ... ok dipy.core.tests.test_geometry.test_dist_to_corner ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_gradients.test_deltas ... ok dipy.core.tests.test_gradients.test_qvalues ... ok dipy.core.tests.test_gradients.test_reorient_bvecs ... ok Test that the presence of nan's in b-vectors doesn't raise warnings. ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_optimize.test_optimize_new_scipy ... ok dipy.core.tests.test_optimize.test_optimize_old_scipy ... SKIP: Skipping test: test_optimize_old_scipy: Test skipped due to test condition dipy.core.tests.test_optimize.test_sklearn_linear_solver ... ok dipy.core.tests.test_optimize.test_nonnegativeleastsquares ... ok dipy.core.tests.test_optimize.test_spdot ... ok dipy.core.tests.test_optimize.test_sparse_nnls ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_sphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ok dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.denoise.tests.test_denoise.test_denoise ... ok Test if the kernel values are correct by comparison against the values ... ok Test if a convolution with a delta spike is equal to the kernel ... ok Test the kernel for inputs of type Sphere, type int and for input None ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_padding ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_static ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_boundary ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_dtype ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4d_3dsigma_and_threads ... ok dipy.denoise.tests.test_noise_estimate.test_inv_nchi ... ok dipy.denoise.tests.test_noise_estimate.test_piesno ... ok dipy.denoise.tests.test_noise_estimate.test_estimate_sigma ... ok dipy.direction.tests.test_peaks.test_peak_directions_nl ... ok dipy.direction.tests.test_peaks.test_OdfFit ... ok dipy.direction.tests.test_peaks.test_peak_directions ... ok dipy.direction.tests.test_peaks.test_peak_directions_thorough ... ok dipy.direction.tests.test_peaks.test_difference_with_minmax ... ok dipy.direction.tests.test_peaks.test_degenerative_cases ... ok dipy.direction.tests.test_peaks.test_peaksFromModel ... ok dipy.direction.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.direction.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.direction.tests.test_prob_direction_getter.test_ProbabilisticDirectionGetter ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... SKIP: Skipping test: test_dpy: Pytables does not appear to be installed dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.reconst.tests.test_cache.test_basic_cache ... ok Test the calculation of the coefficient of determination ... ok Test k-fold cross-validation ... ok dipy.reconst.tests.test_cross_validation.test_csd_xval ... ok Test that if you try to do this with a model that doesn't have a `predict` ... ok Test the recursive response calibration method. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py:188: UserWarning: Vertices are not on the unit sphere. warnings.warn("Vertices are not on the unit sphere.") ok dipy.reconst.tests.test_csdeconv.test_response_from_mask ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:827: UserWarning: No voxel with a FA higher than 1 were found. Try a larger roi or a lower threshold. warnings.warn(msg, UserWarning) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2889: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:80: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:73: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:314: RuntimeWarning: invalid value encountered in true_divide odf_sh /= Z ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok Test prediction API ... ok Check that we can predict reasonably from multi-voxel fits: ... ok Check that mirroring regularization sphere does not change the result of ... ok We check that the default value of lambda is the expected value with ... ok Check the quality of csdfit with high SH order. ... ok dipy.reconst.tests.test_dki.test_positive_evals ... ok dipy.reconst.tests.test_dki.test_split_dki_param ... ok DKI fits are tested on noise free crossing fiber simulates ... ok Apparent kurtosis coeficients are tested for a spherical kurtosis ... ok dipy.reconst.tests.test_dki.test_dki_predict ... ok dipy.reconst.tests.test_dki.test_carlson_rf ... ok dipy.reconst.tests.test_dki.test_carlson_rd ... ok dipy.reconst.tests.test_dki.test_Wrotate_single_fiber ... ok dipy.reconst.tests.test_dki.test_Wrotate_crossing_fibers ... ok dipy.reconst.tests.test_dki.test_Wcons ... ok dipy.reconst.tests.test_dki.test_spherical_dki_statistics ... ok dipy.reconst.tests.test_dki.test_compare_MK_method ... ok dipy.reconst.tests.test_dki.test_single_voxel_DKI_stats ... ok dipy.reconst.tests.test_dki.test_compare_RK_methods ... ok dipy.reconst.tests.test_dki.test_MK_singularities ... ok dipy.reconst.tests.test_dki.test_dki_errors ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi.test_multib0_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok dipy.reconst.tests.test_dti.test_roll_evals ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_tensor_model ... ok dipy.reconst.tests.test_dti.test_indexing_on_tensor_fit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_ga_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_all_zeros ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion ... ok Test model prediction API ... ok dipy.reconst.tests.test_dti.test_eig_from_lo_tri ... ok dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics ... ok dipy.reconst.tests.test_mapmri_odf.test_mapmri_odf ... ok dipy.reconst.tests.test_mapmri_odf.test_multivox_mapmri ... ok dipy.reconst.tests.test_multi_voxel.test_squash ... ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peakdf.test_PeaksAndMetricsDirectionGetter ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_sfm.test_design_matrix ... ok dipy.reconst.tests.test_sfm.test_sfm ... SKIP: Skipping test: test_sfm: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_predict ... SKIP: Skipping test: test_predict: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_sfm_background ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:414: RuntimeWarning: divide by zero encountered in divide flat_S0[..., None]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:61: RuntimeWarning: divide by zero encountered in divide to_fit[nzb0_idx] = data_no_b0[nzb0_idx] / s0[nzb0_idx[0]] ok dipy.reconst.tests.test_sfm.test_sfm_stick ... ok dipy.reconst.tests.test_sfm.test_sfm_sklearnlinearsolver ... ok dipy.reconst.tests.test_sfm.test_exponential_iso ... SKIP: Skipping test: test_exponential_iso: Test skipped due to test condition dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_order_from_ncoeff ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shm.test_faster_sph_harm ... ok dipy.reconst.tests.test_shm.test_anisotropic_power ... ok Based on the table in: ... ok dipy.reconst.tests.test_shore_fitting.test_shore_positive_constrain ... SKIP: Skipping test: test_shore_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_shore_fitting.test_shore_fitting_no_constrain_e0 ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:128: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore_fitting.test_shore_fitting_constrain_e0 ... SKIP: Skipping test: test_shore_fitting_constrain_e0: Test skipped due to test condition dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_clustering.test_cluster_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_assign ... ok dipy.segment.tests.test_clustering.test_cluster_iter ... ok dipy.segment.tests.test_clustering.test_cluster_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_assign ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_clear ... ok dipy.segment.tests.test_clustering.test_cluster_map_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_map_size ... ok dipy.segment.tests.test_clustering.test_cluster_map_clusters_sizes ... ok dipy.segment.tests.test_clustering.test_cluster_map_get_small_and_large_clusters ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_object ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_subclassing_clustering ... ok dipy.segment.tests.test_feature.test_identity_feature ... ok dipy.segment.tests.test_feature.test_feature_resample ... ok dipy.segment.tests.test_feature.test_feature_center_of_mass ... ok dipy.segment.tests.test_feature.test_feature_midpoint ... ok dipy.segment.tests.test_feature.test_feature_arclength ... ok dipy.segment.tests.test_feature.test_feature_vector_of_endpoints ... ok dipy.segment.tests.test_feature.test_feature_extract ... ok dipy.segment.tests.test_feature.test_subclassing_feature ... ok dipy.segment.tests.test_feature.test_using_python_feature_with_cython_metric ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_metric.test_metric_minimum_average_direct_flip ... ok dipy.segment.tests.test_metric.test_metric_cosine ... ok dipy.segment.tests.test_metric.test_subclassing_metric ... ok dipy.segment.tests.test_metric.test_distance_matrix ... ok dipy.segment.tests.test_qb.test_qbundles ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_empty_data ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_wrong_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_shape_uncompatibility ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_2D ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_streamlines ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_not_order_invariant_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_memory_leaks ... ok dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_check_directions ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.sims.tests.test_voxel.test_all_tensor_evecs ... ok Testing symmetry of the elements of the KT ... ok Testing DKI simulations when aligning the same fiber to different axis. ... ok Testing DKI simulations of a crossing fiber ... ok This tests that the Local Tracker behaves as expected for the ... ok dipy.tracking.local.tests.test_local_tracking.test_trilinear_interpolate ... ok This tests that the Probabalistic Direction Getter plays nice ... ok This tests that the Maximum Deterministic Direction Getter plays nice ... ok This tests that the binary tissue classifier returns expected ... ok This tests that the thresholdy tissue classifier returns expected ... ok This tests that the act tissue classifier returns expected ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_life.test_streamline_gradients ... ok dipy.tracking.tests.test_life.test_streamline_tensors ... ok dipy.tracking.tests.test_life.test_streamline_signal ... ok dipy.tracking.tests.test_life.test_voxel2streamline ... ok dipy.tracking.tests.test_life.test_FiberModel_init ... ok dipy.tracking.tests.test_life.test_FiberFit ... ok dipy.tracking.tests.test_life.test_fit_data ... ok dipy.tracking.tests.test_localtrack.test_ThresholdTissueClassifier ... ok dipy.tracking.tests.test_markov.test_BoundaryStepper ... ok dipy.tracking.tests.test_markov.test_FixedSizeStepper ... ok dipy.tracking.tests.test_markov.test_markov_streamline ... ok dipy.tracking.tests.test_markov.test_MarkovIntegrator ... ok dipy.tracking.tests.test_markov.test_closest_peak ... ok dipy.tracking.tests.test_markov.test_ClosestDirectionTracker ... ok dipy.tracking.tests.test_markov.test_ProbabilisticOdfWeightedTracker ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_propagation.test_offset ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok This test checks that the tracking will exclude seeds in both directions. ... ok dipy.tracking.tests.test_propagation.test_eudx_both_directions_errors ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_length ... ok dipy.tracking.tests.test_streamline.test_length_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_unlist_relist_streamlines ... ok dipy.tracking.tests.test_streamline.test_center_and_transform ... ok dipy.tracking.tests.test_streamline.test_select_random_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_select_by_rois ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/streamline.py:244: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: warn(w_s) ok dipy.tracking.tests.test_streamline.test_orient_by_rois ... ok dipy.tracking.tests.test_streamline.test_values_from_volume ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... ok dipy.tracking.tests.test_utils.test_to_voxel_coordinates_precision ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_near_roi ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/utils.py:698: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: 0.866025403784 warn(w_s) ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... ok dipy.tracking.tests.test_utils.test_rmi ... ERROR dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... ok dipy.tracking.tests.test_utils.test_random_seeds_from_mask ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix_shape ... ok Testing the function unique_coords ... ok dipy.tracking.tests.test_utils.test_reduce_rois ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.utils.tests.test_arrfuncs.test_pinv ... ok dipy.utils.tests.test_arrfuncs.test_eigh ... ok dipy.utils.tests.test_tripwire.test_is_tripwire ... ok dipy.utils.tests.test_tripwire.test_tripwire ... ok dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_colormap ... ok dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ... FAIL dipy.viz.tests.test_fvtk_actors.test_bundle_maps ... SKIP: Skipping test: test_bundle_maps: Test skipped due to test condition dipy.viz.tests.test_fvtk_actors.test_slicer ... SKIP: Skipping test: test_slicer: Test skipped due to test condition dipy.viz.tests.test_fvtk_actors.test_streamtube_and_line_actors ... SKIP: Skipping test: test_streamtube_and_line_actors: Test skipped due to test condition dipy.viz.tests.test_fvtk_utils.test_trilinear_interp ... ok dipy.viz.tests.test_fvtk_widgets.test_button_and_slider_widgets ... SKIP: Skipping test: test_button_and_slider_widgets: Test skipped due to test condition dipy.viz.tests.test_fvtk_widgets.test_text_widget ... SKIP: Skipping test: test_text_widget: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_active_camera ... SKIP: Skipping test: test_active_camera: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_order_transparent ... SKIP: Skipping test: test_order_transparent: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_parallel_projection ... SKIP: Skipping test: test_parallel_projection: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_renderer ... SKIP: Skipping test: test_renderer: Test skipped due to test condition dipy.viz.tests.test_regtools.test_plot_2d_diffeomorphic_map ... ok dipy.workflows.tests.test_docstring_parser.test_signature ... ok dipy.workflows.tests.test_docstring_parser.test_summary ... ok dipy.workflows.tests.test_docstring_parser.test_extended_summary ... ok dipy.workflows.tests.test_docstring_parser.test_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_other_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_returns ... ok dipy.workflows.tests.test_docstring_parser.test_notes ... ok dipy.workflows.tests.test_docstring_parser.test_references ... ok dipy.workflows.tests.test_docstring_parser.test_examples ... ok dipy.workflows.tests.test_docstring_parser.test_index ... ok dipy.workflows.tests.test_docstring_parser.test_str ... ok dipy.workflows.tests.test_docstring_parser.test_parameters_without_extended_description ... ok dipy.workflows.tests.test_docstring_parser.test_raises ... ok dipy.workflows.tests.test_docstring_parser.test_warns ... ok dipy.workflows.tests.test_docstring_parser.test_see_also ... ok dipy.workflows.tests.test_docstring_parser.test_empty_first_line ... ok dipy.workflows.tests.test_docstring_parser.test_duplicate_signature ... ok dipy.workflows.tests.test_iap.test_iap ... ok dipy.workflows.tests.test_iap.test_nargs ... ok dipy.workflows.tests.test_segment.test_median_otsu_flow ... ok dipy.workflows.tests.test_utils.test_choose_create_out_dir ... ok dipy.testing.tests.test_decorators.test_skipper ... ok dipy.testing.tests.test_memory.test_get_type_refcount ... ok dipy.tests.test_scripts.test_dipy_peak_extraction ... ok dipy.tests.test_scripts.test_dipy_fit_tensor ... ok dipy.tests.test_scripts.test_dipy_sh_estimate ... ok dipy.tests.test_scripts.test_dipy_fit_tensor_again ... ok dipy.tests.test_scripts.test_qb_commandline ... ok dipy.tests.test_scripts.test_qb_commandline_output_path_handling ... ok ====================================================================== ERROR: dipy.tracking.tests.test_utils.test_rmi ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py", line 455, in test_rmi I2 = ravel_multi_index([A, B, C, D], dims=[1000]*4) ValueError: invalid dims: array size defined by dims is larger than the maximum possible size. ====================================================================== FAIL: dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func return f(*args, **kwargs) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests/test_fvtk.py", line 118, in test_colormaps_matplotlib npt.assert_array_almost_equal(rgba1, rgba2, 1) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 979, in assert_array_almost_equal precision=decimal) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Arrays are not almost equal to 1 decimals (mismatch 16.625%) x: array([[ 0.7, 0.4, 0.1, 1. ], [ 1. , 0.8, 0.5, 1. ], [ 0.2, 0.4, 0.7, 1. ],... y: array([[ 0.8, 0.2, 0.3, 1. ], [ 1. , 0.8, 0.5, 1. ], [ 0.3, 0.4, 0.7, 1. ],... ---------------------------------------------------------------------- Ran 533 tests in 2415.233s FAILED (SKIP=18, errors=1, failures=1) 659e-05, 2.39374615e-05, 2.40208011e-07, 3.15511002e-07, -8.12591247e-08, 5.68463753e-07, -2.75976573e-07, 3.94143169e-07], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], [ -4.39490006e-10, -4.87198828e-11, 1.50924876e-10, -1.27390680e-09, 1.17747761e-09, 8.08278856e-09, -2.13400565e-11, 5.16948786e-11, -1.93202740e-11, 1.32502258e-10, -1.06697161e-11, -2.75639507e-11]]) fun: 5.8620852415663412e-14 message: 'Optimization terminated successfully.' nfev: 8193 nit: 45 status: 0 success: True x: array([ 1.25024066e-07, -2.82572850e-07, 1.51899506e-07, 5.67909290e-03, -1.34928602e-02, -2.31023787e-04, 9.99980491e-01, 9.99993422e-01, 1.00007347e+00, -1.90408997e-05, 2.08556348e-04, 8.68103935e-05]) first rigid then similarity then affine B-values shape (7,) min 0.000000 max 1500.000000 B-vectors shape (7, 3) min 0.000000 max 1.000000 Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} fun: 1.1908915926500003e-16 hess_inv: <3x3 LbfgsInvHessProduct with dtype=float64> jac: array([ -2.60101368e-09, -2.60101368e-09, -2.60101368e-09]) message: 'CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL' nfev: 12 nit: 2 status: 0 success: True x: array([ -6.30050684e-09, -6.30050684e-09, -6.30050684e-09]) The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 (99.991053185221148, 92.659519705931899, 107.78580469998036) (100.0107238740066, 99.441778791302781, 100.58552484499536) 301.76267195 99.5007627403 cpu count 4 1 94.2353188992 All 24.9270169735 2 24.9270169735 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int32)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int32)) 3 0.000882863998413 13 0.0123510360718 13 1.29426407814 161 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195713]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Optimizing level 3 Optimizing level 2 Optimizing level 1 Optimizing level 0 Applying median_otsu segmentation on /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files/small_25.nii.gz Mask saved as /tmp/tmpfCcMy9/small_25_mask.nii.gz Masked volume saved as /tmp/tmpfCcMy9/small_25_bet.nii.gz debian/rules:75: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/<>' debian/rules:30: recipe for target 'binary-arch' failed make: *** [binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 20170715-2210 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 359632 Build-Time: 3438 Distribution: artful Fail-Stage: build Host Architecture: armhf Install-Time: 85 Job: dipy_0.11.0-1.dsc Machine Architecture: arm64 Package: dipy Package-Time: 3530 Source-Version: 0.11.0-1 Space: 359632 Status: attempted Version: 0.11.0-1 -------------------------------------------------------------------------------- Finished at 20170715-2210 Build needed 00:58:50, 359632k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12964101'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12964101/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12964101'] Unmounting chroot for build PACKAGEBUILD-12964101... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12964101'] Removing build PACKAGEBUILD-12964101