RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-017 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:58:57 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_145 python-lpbuildd_145 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 9 Jul 08:20:32 ntpdate[1812]: adjust time server 10.211.37.1 offset 0.004506 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12870118', '/home/buildd/filecache-default/393420d2b09d3fd212076c1e7bb21902ac116e2c'] Unpacking chroot for build PACKAGEBUILD-12870118 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12870118'] Mounting chroot for build PACKAGEBUILD-12870118 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12870118', 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful main', 'deb http://ftpmaster.internal/ubuntu artful main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-12870118 RUN: /usr/share/launchpad-buildd/slavebin/add-trusted-keys ['add-trusted-keys', 'PACKAGEBUILD-12870118'] Adding trusted keys to build-PACKAGEBUILD-12870118 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12870118', 'arm64'] Updating debian chroot for build PACKAGEBUILD-12870118 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:3 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 Packages [21.1 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main Translation-en [16.6 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main arm64 Packages [1093 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main Translation-en [555 kB] Get:9 http://ftpmaster.internal/ubuntu artful/restricted Translation-en [2724 B] Get:10 http://ftpmaster.internal/ubuntu artful/universe arm64 Packages [8035 kB] Get:11 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4768 kB] Get:12 http://ftpmaster.internal/ubuntu artful/multiverse arm64 Packages [130 kB] Get:13 http://ftpmaster.internal/ubuntu artful/multiverse Translation-en [109 kB] Fetched 15.1 MB in 6s (2507 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils bsdutils ca-certificates cpp cpp-6 debianutils dmsetup dpkg dpkg-dev findutils g++ g++-6 gcc gcc-6 gcc-6-base libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libip4tc0 libitm1 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libnpth0 libp11-kit0 libperl5.24 libpng16-16 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv tzdata util-linux 82 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 44.7 MB of archives. After this operation, 2144 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main arm64 base-files arm64 9.6ubuntu101 [59.1 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main arm64 debianutils arm64 4.8.1.1 [84.8 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main arm64 bash arm64 4.4-5ubuntu1 [543 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 gcc-7-base arm64 7.1.0-9ubuntu1 [18.9 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libgcc1 arm64 1:7.1.0-9ubuntu1 [33.5 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libstdc++6 arm64 7.1.0-9ubuntu1 [384 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main arm64 bsdutils arm64 1:2.29-1ubuntu3 [51.4 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main arm64 dpkg arm64 1.18.24ubuntu1 [1097 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 binutils arm64 2.28.90.20170704-0ubuntu1 [2670 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main arm64 findutils arm64 4.6.0+git+20170606-3 [277 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main arm64 login arm64 1:4.2-3.2ubuntu2 [298 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main arm64 util-linux arm64 2.29-1ubuntu3 [828 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main arm64 mount arm64 2.29-1ubuntu3 [120 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main arm64 libperl5.24 arm64 5.24.1-4ubuntu1 [3214 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libgomp1 arm64 7.1.0-9ubuntu1 [62.1 kB] Get:16 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libitm1 arm64 7.1.0-9ubuntu1 [25.5 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main arm64 perl arm64 5.24.1-4ubuntu1 [219 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main arm64 perl-base arm64 5.24.1-4ubuntu1 [1187 kB] Get:19 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libubsan0 arm64 7.1.0-9ubuntu1 [111 kB] Get:20 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libatomic1 arm64 7.1.0-9ubuntu1 [6606 B] Get:21 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libasan3 arm64 6.4.0-1ubuntu2 [274 kB] Get:22 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 g++-6 arm64 6.4.0-1ubuntu2 [5878 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main arm64 perl-modules-5.24 all 5.24.1-4ubuntu1 [2663 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main arm64 libapt-pkg5.0 arm64 1.5~beta1 [724 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main arm64 apt-transport-https arm64 1.5~beta1 [31.0 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main arm64 libp11-kit0 arm64 0.23.7-2 [134 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main arm64 libtasn1-6 arm64 4.12-2 [30.8 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main arm64 libgnutls30 arm64 3.5.8-6ubuntu1 [559 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main arm64 apt arm64 1.5~beta1 [1071 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main arm64 libip4tc0 arm64 1.6.1-2ubuntu1 [18.2 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main arm64 libapparmor1 arm64 2.11.0-2ubuntu8 [26.8 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main arm64 libaudit-common all 1:2.7.7-1ubuntu1 [4118 B] Get:33 http://ftpmaster.internal/ubuntu artful/main arm64 libaudit1 arm64 1:2.7.7-1ubuntu1 [35.1 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main arm64 libselinux1 arm64 2.6-3build1 [55.5 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main arm64 libsemanage-common all 2.6-2build1 [6738 B] Get:36 http://ftpmaster.internal/ubuntu artful/main arm64 libsemanage1 arm64 2.6-2build1 [67.1 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main arm64 passwd arm64 1:4.2-3.2ubuntu2 [735 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main arm64 libuuid1 arm64 2.29-1ubuntu3 [14.0 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main arm64 libblkid1 arm64 2.29-1ubuntu3 [90.1 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main arm64 libgpg-error0 arm64 1.27-3 [32.1 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main arm64 libgcrypt20 arm64 1.7.8-2 [307 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main arm64 libkmod2 arm64 24-1ubuntu1 [31.7 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main arm64 libmount1 arm64 2.29-1ubuntu3 [97.9 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main arm64 systemd arm64 233-8ubuntu2 [2115 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main arm64 libsystemd0 arm64 233-8ubuntu2 [170 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main arm64 systemd-sysv arm64 233-8ubuntu2 [12.4 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main arm64 libfdisk1 arm64 2.29-1ubuntu3 [118 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main arm64 libsmartcols1 arm64 2.29-1ubuntu3 [57.0 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main arm64 libudev1 arm64 233-8ubuntu2 [47.3 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main arm64 libdevmapper1.02.1 arm64 2:1.02.137-2ubuntu2 [109 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main arm64 dmsetup arm64 2:1.02.137-2ubuntu2 [64.8 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main arm64 libroken18-heimdal arm64 7.1.0+dfsg-13 [34.3 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main arm64 libasn1-8-heimdal arm64 7.1.0+dfsg-13 [127 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main arm64 libheimbase1-heimdal arm64 7.1.0+dfsg-13 [24.1 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main arm64 libhcrypto4-heimdal arm64 7.1.0+dfsg-13 [74.2 kB] Get:56 http://ftpmaster.internal/ubuntu artful/main arm64 libwind0-heimdal arm64 7.1.0+dfsg-13 [46.9 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main arm64 libhx509-5-heimdal arm64 7.1.0+dfsg-13 [86.8 kB] Get:58 http://ftpmaster.internal/ubuntu artful/main arm64 libsqlite3-0 arm64 3.19.3-2 [414 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main arm64 libkrb5-26-heimdal arm64 7.1.0+dfsg-13 [166 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main arm64 libheimntlm0-heimdal arm64 7.1.0+dfsg-13 [13.3 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main arm64 libgssapi3-heimdal arm64 7.1.0+dfsg-13 [77.3 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main arm64 libldap-2.4-2 arm64 2.4.44+dfsg-7ubuntu1 [128 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main arm64 libldap-common all 2.4.44+dfsg-7ubuntu1 [16.4 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main arm64 libnpth0 arm64 1.5-2 [6778 B] Get:65 http://ftpmaster.internal/ubuntu artful/main arm64 libssl1.0.0 arm64 1.0.2g-1ubuntu13 [702 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main arm64 tzdata all 2017b-2 [203 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main arm64 openssl arm64 1.0.2g-1ubuntu13 [470 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main arm64 ca-certificates all 20161130+nmu1 [186 kB] Get:69 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libstdc++-6-dev arm64 6.4.0-1ubuntu2 [1393 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main arm64 libpng16-16 arm64 1.6.29-3 [158 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main arm64 advancecomp arm64 2.0-1 [171 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main arm64 cpp arm64 4:6.3.0-2ubuntu2 [27.5 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main arm64 dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main arm64 libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main arm64 gcc arm64 4:6.3.0-2ubuntu2 [5276 B] Get:76 http://ftpmaster.internal/ubuntu artful/main arm64 g++ arm64 4:6.3.0-2ubuntu2 [1476 B] Get:77 http://ftpmaster.internal/ubuntu artful/main arm64 libusb-0.1-4 arm64 2:0.1.12-31 [15.0 kB] Get:78 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 gcc-6 arm64 6.4.0-1ubuntu2 [5792 kB] Get:79 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libgcc-6-dev arm64 6.4.0-1ubuntu2 [562 kB] Get:80 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 libcc1-0 arm64 7.1.0-9ubuntu1 [35.4 kB] Get:81 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 cpp-6 arm64 6.4.0-1ubuntu2 [5121 kB] Get:82 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 gcc-6-base arm64 6.4.0-1ubuntu2 [17.3 kB] Get:83 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu artful/main arm64 linux-libc-dev arm64 4.11.0-10.15 [898 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.7 MB in 1s (26.5 MB/s) (Reading database ... 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Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jul 9 08:21:19 UTC 2017. Universal Time is now: Sun Jul 9 08:21:19 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu2) ... Setting up libubsan0:arm64 (7.1.0-9ubuntu1) ... Setting up gcc-6-base:arm64 (6.4.0-1ubuntu2) ... Setting up linux-libc-dev:arm64 (4.11.0-10.15) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.137-2ubuntu2) ... Setting up perl (5.24.1-4ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:arm64 (3.19.3-2) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28.90.20170704-0ubuntu1) ... Setting up cpp-6 (6.4.0-1ubuntu2) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:arm64 (2:0.1.12-31) ... Setting up libitm1:arm64 (7.1.0-9ubuntu1) ... Setting up cpp (4:6.3.0-2ubuntu2) ... Setting up libasan3:arm64 (6.4.0-1ubuntu2) ... Setting up libgcc-6-dev:arm64 (6.4.0-1ubuntu2) ... Setting up libstdc++-6-dev:arm64 (6.4.0-1ubuntu2) ... Setting up libwind0-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libasn1-8-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up gcc-6 (6.4.0-1ubuntu2) ... Setting up g++-6 (6.4.0-1ubuntu2) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up gcc (4:6.3.0-2ubuntu2) ... Setting up g++ (4:6.3.0-2ubuntu2) ... Setting up libgssapi3-heimdal:arm64 (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:arm64 (2.4.44+dfsg-7ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12870118', 'arm64', 'artful', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=artful', '--purge=never', '--nolog', 'dipy_0.11.0-1.dsc'] Initiating build PACKAGEBUILD-12870118 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:58:57 UTC 2017 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-017.buildd +==============================================================================+ | dipy 0.11.0-1 (arm64) 09 Jul 2017 08:21 | +==============================================================================+ Package: dipy Version: 0.11.0-1 Source Version: 0.11.0-1 Distribution: artful Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/dipy-fc3Zd6/dipy-0.11.0' with '<>' I: NOTICE: Log filtering will replace 'build/dipy-fc3Zd6' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12870118/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dipy_0.11.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-SC1M6K/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-SC1M6K/apt_archive ./ InRelease Get:2 copy:/<>/resolver-SC1M6K/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-SC1M6K/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-SC1M6K/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-SC1M6K/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (135 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-SC1M6K/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 Filtered Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 dpkg-deb: building package 'sbuild-build-depends-dipy-dummy' in '/<>/resolver-W4_0YD/apt_archive/sbuild-build-depends-dipy-dummy.deb'. Ign:1 copy:/<>/resolver-W4_0YD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-W4_0YD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-W4_0YD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-W4_0YD/apt_archive ./ Sources [284 B] Get:5 copy:/<>/resolver-W4_0YD/apt_archive ./ Packages [604 B] Fetched 3007 B in 0s (152 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dipy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common gvfs libjs-jquery-ui-docs librsvg2-bin libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-setuptools python-pyparsing-doc python-cryptography python-idna python-openssl python-socks python-scipy-doc python-sphinx-rtd-theme libjs-mathjax texlive-fonts-recommended texlive-generic-extra sphinx-doc python-ntlm python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx-cur dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-glade2 python-imaging python-tk python-dicom python-fuse python-mock python-enum34 python-cryptography python-idna python-ipaddress python-openssl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-dipy-dummy sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core 0 upgraded, 145 newly installed, 1 to remove and 0 not upgraded. Need to get 87.1 MB of archives. After this operation, 358 MB of additional disk space will be used. 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Setting up libgdk-pixbuf2.0-common (2.36.5-3) ... Setting up libdatrie1:arm64 (0.2.10-4) ... Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libjpeg-turbo8:arm64 (1.5.1-0ubuntu1) ... Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libicu57:arm64 (57.1-6) ... Setting up libbsd0:arm64 (0.8.5-1) ... Setting up ucf (3.0036) ... Setting up libxml2:arm64 (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libfreetype6:arm64 (2.6.3-3.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:arm64 (1:5.30-1) ... Setting up libgraphite2-3:arm64 (1.3.10-2) ... Setting up libcroco3:arm64 (0.6.12-1) ... Setting up libatk1.0-data (2.22.0-1) ... Setting up libpixman-1-0:arm64 (0.34.0-1) ... Setting up libblas3 (3.7.1-1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libatk1.0-0:arm64 (2.22.0-1) ... Setting up python-babel-localedata (2.3.4+dfsg.1-2ubuntu1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up sphinx-common (1.5.6-1) ... Setting up libexpat1-dev:arm64 (2.2.1-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up shared-mime-info (1.8-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hicolor-icon-theme (0.15-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:arm64 (2.7.13-2) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libdbus-1-3:arm64 (1.10.18-1ubuntu2) ... Setting up libavahi-common-data:arm64 (0.6.32-1ubuntu1) ... Setting up fonts-lyx (2.2.3-1) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2ubuntu2) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up liblapack3 (3.7.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python2.7 (2.7.13-2) ... Setting up libharfbuzz0b:arm64 (1.4.2-1) ... Setting up libtiff5:arm64 (4.0.8-3) ... Setting up autoconf (2.69-10) ... Setting up libthai0:arm64 (0.1.26-1) ... Setting up file (1:5.30-1) ... Setting up libpython-stdlib:arm64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:arm64 (2.7.13-2) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:arm64 (2.7.13-2) ... Setting up libavahi-common3:arm64 (0.6.32-1ubuntu1) ... Setting up python2.7-dev (2.7.13-2) ... Setting up libxcb1:arm64 (1.11.1-1ubuntu1) ... Setting up python (2.7.13-2) ... Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up libtool (2.4.6-2) ... Setting up libpython-dev:arm64 (2.7.13-2) ... Setting up libfontconfig1:arm64 (2.11.94-0ubuntu2) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up libxcb-render0:arm64 (1.11.1-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.13-2) ... Setting up python-tz (2017.2-2) ... Setting up libx11-6:arm64 (2:1.6.4-3) ... Setting up libpython-all-dev:arm64 (2.7.13-2) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (36.0.1-1) ... Setting up python-roman (2.0.0-2) ... Setting up python-markupsafe (1.0-1) ... Setting up python-numpy (1:1.12.1-3ubuntu1) ... Setting up cython (0.25.2-1build1) ... Setting up python-six (1.10.0-4) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up libxcomposite1:arm64 (1:0.4.4-2) ... Setting up libxcb-shm0:arm64 (1.11.1-1ubuntu1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libavahi-client3:arm64 (0.6.32-1ubuntu1) ... Setting up python-decorator (4.0.11-1) ... Setting up python-subprocess32 (3.2.7-2) ... Setting up python-nose (1.3.7-2) ... Setting up python-all (2.7.13-2) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libcups2:arm64 (2.2.3-2) ... Setting up python-urllib3 (1.19.1-1) ... Setting up python-chardet (3.0.4-1) ... Setting up libxdamage1:arm64 (1:1.1.4-2) ... Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up python-scipy (0.18.1-2ubuntu1) ... Setting up python-jinja2 (2.9.6-1) ... Setting up python-babel (2.3.4+dfsg.1-2ubuntu1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libgdk-pixbuf2.0-0:arm64 (2.36.5-3) ... Setting up python-cycler (0.10.0-1) ... Setting up python-dateutil (2.5.3-2) ... Setting up gtk-update-icon-cache (3.22.15-0ubuntu2) ... Setting up libxcursor1:arm64 (1:1.1.14-1) ... Setting up python-all-dev (2.7.13-2) ... Setting up libpango-1.0-0:arm64 (1.40.5-1) ... Setting up python-requests (2.12.4-1) ... Setting up python-nibabel (2.1.0-1) ... Setting up libxrandr2:arm64 (2:1.5.1-1) ... Setting up libxi6:arm64 (2:1.7.9-1) ... Setting up libcairo2:arm64 (1.14.8-1) ... Setting up libxinerama1:arm64 (2:1.1.3-1) ... Setting up libpangoft2-1.0-0:arm64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:arm64 (1.40.5-1) ... Setting up librsvg2-2:arm64 (2.40.16-2) ... Setting up librsvg2-common:arm64 (2.40.16-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.5.6-1) ... Setting up adwaita-icon-theme (3.24.0-0ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:arm64 (2.24.31-1ubuntu1) ... Setting up dh-autoreconf (14) ... Setting up python-matplotlib (2.0.0+dfsg1-2ubuntu2) ... Setting up humanity-icon-theme (0.6.13) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up debhelper (10.4ubuntu3) ... Setting up ubuntu-mono (16.10+17.10.20170703-0ubuntu1) ... Setting up sbuild-build-depends-dipy-dummy (0.invalid.0) ... (Reading database ... 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Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-83-generic arm64 (aarch64) Toolchain package versions: binutils_2.28.90.20170704-0ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.4.0-1ubuntu2 gcc-6_6.4.0-1ubuntu2 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.4.0-1ubuntu2 libstdc++6_7.1.0-9ubuntu1 linux-libc-dev_4.11.0-10.15 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 adwaita-icon-theme_3.24.0-0ubuntu1 apt_1.5~beta1 apt-transport-https_1.5~beta1 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu101 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28.90.20170704-0ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu2 cpp-6_6.4.0-1ubuntu2 cython_0.25.2-1build1 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 docutils-common_0.13.1+dfsg-2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20170606-3 fontconfig_2.11.94-0ubuntu2 fontconfig-config_2.11.94-0ubuntu2 fonts-lyx_2.2.3-1 g++_4:6.3.0-2ubuntu2 g++-6_6.4.0-1ubuntu2 gcc_4:6.3.0-2ubuntu2 gcc-6_6.4.0-1ubuntu2 gcc-6-base_6.4.0-1ubuntu2 gcc-7-base_7.1.0-9ubuntu1 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gtk-update-icon-cache_3.22.15-0ubuntu2 gzip_1.6-5ubuntu1 hicolor-icon-theme_0.15-1 hostname_3.18 humanity-icon-theme_0.6.13 init_1.47 init-system-helpers_1.47 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1ubuntu2 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatk1.0-0_2.22.0-1 libatk1.0-data_2.22.0-1 libatomic1_7.1.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu1 libaudit1_1:2.7.7-1ubuntu1 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libblas-common_3.7.1-1 libblas3_3.7.1-1 libblkid1_2.29-1ubuntu3 libbsd0_0.8.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcairo2_1.14.8-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-9ubuntu1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcups2_2.2.3-2 libcurl3-gnutls_7.52.1-5ubuntu1 libdatrie1_0.2.10-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.18-1ubuntu2 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.1-2 libexpat1-dev_2.2.1-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libfontconfig1_2.11.94-0ubuntu2 libfreetype6_2.6.3-3.2ubuntu1 libgcc-6-dev_6.4.0-1ubuntu2 libgcc1_1:7.1.0-9ubuntu1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.36.5-3 libgdk-pixbuf2.0-common_2.36.5-3 libgfortran3_6.4.0-1ubuntu2 libglib2.0-0_2.53.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-9ubuntu1 libgpg-error0_1.27-3 libgraphite2-3_1.3.10-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libgtk2.0-0_2.24.31-1ubuntu1 libgtk2.0-common_2.24.31-1ubuntu1 libharfbuzz0b_1.4.2-1 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.1.0-9ubuntu1 libjbig0_2.1-3.1 libjpeg-turbo8_1.5.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.1.1-2 libjs-jquery-ui_1.12.1+dfsg-4 libjs-sphinxdoc_1.5.6-1 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 liblapack3_3.7.1-1 libldap-2.4-2_2.4.44+dfsg-7ubuntu1 libldap-common_2.4.44+dfsg-7ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.5-2 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpango-1.0-0_1.40.5-1 libpangocairo-1.0-0_1.40.5-1 libpangoft2-1.0-0_1.40.5-1 libpcre3_2:8.39-3 libperl5.24_5.24.1-4ubuntu1 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libpython-all-dev_2.7.13-2 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-13 librsvg2-2_2.40.16-2 librsvg2-common_2.40.16-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.19.3-2 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.4.0-1ubuntu2 libstdc++6_7.1.0-9ubuntu1 libsystemd0_233-8ubuntu2 libtasn1-6_4.12-2 libthai-data_0.1.26-1 libthai0_0.1.26-1 libtiff5_4.0.8-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-9ubuntu1 libudev1_233-8ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.1.0+dfsg-13 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1 libxml2_2.9.4+dfsg1-2.2ubuntu1 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 linux-libc-dev_4.11.0-10.15 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-4ubuntu1 perl-base_5.24.1-4ubuntu1 perl-modules-5.24_5.24.1-4ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-2 python-alabaster_0.7.8-1 python-all_2.7.13-2 python-all-dev_2.7.13-2 python-babel_2.3.4+dfsg.1-2ubuntu1 python-babel-localedata_2.3.4+dfsg.1-2ubuntu1 python-chardet_3.0.4-1 python-cycler_0.10.0-1 python-dateutil_2.5.3-2 python-decorator_4.0.11-1 python-dev_2.7.13-2 python-docutils_0.13.1+dfsg-2 python-functools32_3.2.3.2-3 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1 python-matplotlib_2.0.0+dfsg1-2ubuntu2 python-matplotlib-data_2.0.0+dfsg1-2ubuntu2 python-minimal_2.7.13-2 python-nibabel_2.1.0-1 python-nose_1.3.7-2 python-numpy_1:1.12.1-3ubuntu1 python-pkg-resources_36.0.1-1 python-pygments_2.2.0+dfsg-1 python-pyparsing_2.1.10+dfsg1-1 python-requests_2.12.4-1 python-roman_2.0.0-2 python-scipy_0.18.1-2ubuntu1 python-six_1.10.0-4 python-sphinx_1.5.6-1 python-subprocess32_3.2.7-2 python-tz_2017.2-2 python-urllib3_1.19.1-1 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dipy-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sgml-base_1.29 shared-mime-info_1.8-1 sphinx-common_1.5.6-1 systemd_233-8ubuntu2 systemd-sysv_233-8ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 ttf-bitstream-vera_1.10-8 tzdata_2017b-2 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+17.10.20170703-0ubuntu1 ucf_3.0036 util-linux_2.29-1ubuntu3 xml-core_0.17 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Feb 22 20:44:45 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dipy_0.11.0-1.dsc dpkg-source: info: extracting dipy in dipy-0.11.0 dpkg-source: info: unpacking dipy_0.11.0.orig.tar.gz dpkg-source: info: unpacking dipy_0.11.0.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.11.0-1.debian.tar.xz dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 0.11.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build dipy-0.11.0 dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from dipy-0.11.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ fakeroot debian/rules clean dh --buildsystem=python_distutils clean --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -O--buildsystem=python_distutils debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find dipy -iname *.c | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f rm -f pyx-stamps dh_auto_clean override_dh_auto_clean dh_auto_clean: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py clean -a running clean 'build/lib.linux-aarch64-2.7' does not exist -- can't clean it 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/<>/doc' rm -rf reference/*.rst cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory Makefile:31: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory '/<>/doc' dh_clean dh_clean: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' debian/rules build-arch dh --buildsystem=python_distutils build-arch --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testdir -a -O--buildsystem=python_distutils dh_update_autotools_config -a -O--buildsystem=python_distutils dh_auto_configure -a -O--buildsystem=python_distutils dh_auto_configure: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.21" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : dh_auto_build dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py build --force running build running build_py creating build creating build/lib.linux-aarch64-2.7 creating build/lib.linux-aarch64-2.7/dipy copying dipy/info.py -> build/lib.linux-aarch64-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-aarch64-2.7/dipy copying dipy/__init__.py -> build/lib.linux-aarch64-2.7/dipy creating build/lib.linux-aarch64-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-aarch64-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.linux-aarch64-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tests creating build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.linux-aarch64-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-aarch64-2.7/dipy/align creating build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.linux-aarch64-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.linux-aarch64-2.7/dipy/align/tests creating build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-aarch64-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-aarch64-2.7/dipy/core creating build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-aarch64-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.linux-aarch64-2.7/dipy/core/tests creating build/lib.linux-aarch64-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.linux-aarch64-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.linux-aarch64-2.7/dipy/direction copying dipy/direction/probabilistic_direction_getter.py -> build/lib.linux-aarch64-2.7/dipy/direction creating build/lib.linux-aarch64-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.linux-aarch64-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.linux-aarch64-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/direction/tests creating build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/gui_tools.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/markov.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/interfaces.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.linux-aarch64-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-aarch64-2.7/dipy/tracking creating build/lib.linux-aarch64-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.linux-aarch64-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tracking/local creating build/lib.linux-aarch64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.linux-aarch64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_local_tracking.py -> build/lib.linux-aarch64-2.7/dipy/tracking/local/tests creating build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_localtrack.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_markov.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.linux-aarch64-2.7/dipy/tracking/tests creating build/lib.linux-aarch64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.linux-aarch64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.linux-aarch64-2.7/dipy/tracking/benchmarks creating build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.linux-aarch64-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-aarch64-2.7/dipy/reconst creating build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks creating build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_fitting.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri_odf.py -> build/lib.linux-aarch64-2.7/dipy/reconst/tests creating build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-aarch64-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-aarch64-2.7/dipy/io creating build/lib.linux-aarch64-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-aarch64-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-aarch64-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-aarch64-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-aarch64-2.7/dipy/io/tests creating build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/utils.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/actor.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/widget.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-aarch64-2.7/dipy/viz copying dipy/viz/window.py -> build/lib.linux-aarch64-2.7/dipy/viz creating build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_actors.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_window.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_utils.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk_widgets.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.linux-aarch64-2.7/dipy/viz/tests creating build/lib.linux-aarch64-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-aarch64-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.linux-aarch64-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-aarch64-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-aarch64-2.7/dipy/testing creating build/lib.linux-aarch64-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-aarch64-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.linux-aarch64-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/testing/tests creating build/lib.linux-aarch64-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-aarch64-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-aarch64-2.7/dipy/boots creating build/lib.linux-aarch64-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-aarch64-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-aarch64-2.7/dipy/data creating build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-aarch64-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.linux-aarch64-2.7/dipy/utils creating build/lib.linux-aarch64-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.linux-aarch64-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-aarch64-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/utils/tests creating build/lib.linux-aarch64-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.linux-aarch64-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-aarch64-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-aarch64-2.7/dipy/fixes creating build/lib.linux-aarch64-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-aarch64-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-aarch64-2.7/dipy/external creating build/lib.linux-aarch64-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/external/tests creating build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-aarch64-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-aarch64-2.7/dipy/segment creating build/lib.linux-aarch64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.linux-aarch64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.linux-aarch64-2.7/dipy/segment/benchmarks creating build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-aarch64-2.7/dipy/segment/tests creating build/lib.linux-aarch64-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-aarch64-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-aarch64-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-aarch64-2.7/dipy/sims creating build/lib.linux-aarch64-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-aarch64-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-aarch64-2.7/dipy/sims/tests creating build/lib.linux-aarch64-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.linux-aarch64-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.linux-aarch64-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.linux-aarch64-2.7/dipy/denoise creating build/lib.linux-aarch64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.linux-aarch64-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.linux-aarch64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.linux-aarch64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.linux-aarch64-2.7/dipy/denoise/tests creating build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/utils.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.linux-aarch64-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.linux-aarch64-2.7/dipy/workflows creating build/lib.linux-aarch64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.linux-aarch64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_utils.py -> build/lib.linux-aarch64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.linux-aarch64-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.linux-aarch64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.linux-aarch64-2.7/dipy/workflows/tests creating build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.linux-aarch64-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.linux-aarch64-2.7/dipy/data/files running build_ext aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o /arch:SSE2 aarch64-linux-gnu-gcc: error: /arch:SSE2: No such file or directory Flags ['/arch:SSE2'] omitted because of compile or link error aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse aarch64-linux-gnu-gcc: error: unrecognized command line option ‘-msse2’ aarch64-linux-gnu-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp cythoning dipy/reconst/peak_direction_getter.pyx to dipy/reconst/peak_direction_getter.c warning: dipy/reconst/peak_direction_getter.pyx:57:4: Overriding cdef method with def method. building 'dipy.reconst.peak_direction_getter' extension creating build/temp.linux-aarch64-2.7 creating build/temp.linux-aarch64-2.7/dipy creating build/temp.linux-aarch64-2.7/dipy/reconst aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/peak_direction_getter.c -o build/temp.linux-aarch64-2.7/dipy/reconst/peak_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/peak_direction_getter.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/reconst/peak_direction_getter.c: In function ‘__pyx_pw_4dipy_7reconst_21peak_direction_getter_30PeaksAndMetricsDirectionGetter_5initial_direction’: dipy/reconst/peak_direction_getter.c:3234:3: warning: ‘__pyx_v_numpeaks’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (__pyx_t_16 = 0; __pyx_t_16 < __pyx_t_5; __pyx_t_16+=1) { ^~~ dipy/reconst/peak_direction_getter.c:2937:12: note: ‘__pyx_v_numpeaks’ was declared here npy_intp __pyx_v_numpeaks; ^~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/reconst/peak_direction_getter.o -o build/lib.linux-aarch64-2.7/dipy/reconst/peak_direction_getter.so -fopenmp cythoning dipy/reconst/recspeed.pyx to dipy/reconst/recspeed.c warning: dipy/reconst/recspeed.pyx:570:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:59: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.reconst.recspeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-aarch64-2.7/dipy/reconst/recspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/reconst/recspeed.o -o build/lib.linux-aarch64-2.7/dipy/reconst/recspeed.so -fopenmp cythoning dipy/reconst/vec_val_sum.pyx to dipy/reconst/vec_val_sum.c building 'dipy.reconst.vec_val_sum' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-aarch64-2.7/dipy/reconst/vec_val_sum.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-aarch64-2.7/dipy/reconst/vec_val_sum.so -fopenmp cythoning dipy/reconst/quick_squash.pyx to dipy/reconst/quick_squash.c building 'dipy.reconst.quick_squash' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-aarch64-2.7/dipy/reconst/quick_squash.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-aarch64-2.7/dipy/reconst/quick_squash.so -fopenmp cythoning dipy/tracking/distances.pyx to dipy/tracking/distances.c warning: dipy/tracking/distances.pyx:253:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:253:53: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:254:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:254:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:255:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:256:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:423:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:519:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:584:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:622:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:622:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:660:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:660:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:748:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:748:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:816:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:816:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:42: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:49: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:56: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:901:63: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:990:43: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1055:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1059:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1059:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1182:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1210:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1289:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1306:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1542:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1543:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1985:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1985:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2037:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.distances' extension creating build/temp.linux-aarch64-2.7/dipy/tracking aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-aarch64-2.7/dipy/tracking/distances.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_f_4dipy_8tracking_9distances_czhang’: dipy/tracking/distances.c:8571:10: warning: ‘__pyx_v_dist_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] return __pyx_r; ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/distances.o -o build/lib.linux-aarch64-2.7/dipy/tracking/distances.so -fopenmp cythoning dipy/tracking/streamlinespeed.pyx to dipy/tracking/streamlinespeed.c building 'dipy.tracking.streamlinespeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/streamlinespeed.c -o build/temp.linux-aarch64-2.7/dipy/tracking/streamlinespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/streamlinespeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/streamlinespeed.o -o build/lib.linux-aarch64-2.7/dipy/tracking/streamlinespeed.so -fopenmp cythoning dipy/tracking/local/localtrack.pyx to dipy/tracking/local/localtrack.c warning: dipy/tracking/local/localtrack.pyx:153:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.local.localtrack' extension creating build/temp.linux-aarch64-2.7/dipy/tracking/local aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/localtrack.c -o build/temp.linux-aarch64-2.7/dipy/tracking/local/localtrack.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/localtrack.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/local/localtrack.o -o build/lib.linux-aarch64-2.7/dipy/tracking/local/localtrack.so -fopenmp cythoning dipy/tracking/local/direction_getter.pyx to dipy/tracking/local/direction_getter.c building 'dipy.tracking.local.direction_getter' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/direction_getter.c -o build/temp.linux-aarch64-2.7/dipy/tracking/local/direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/direction_getter.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/local/direction_getter.o -o build/lib.linux-aarch64-2.7/dipy/tracking/local/direction_getter.so -fopenmp cythoning dipy/tracking/local/tissue_classifier.pyx to dipy/tracking/local/tissue_classifier.c building 'dipy.tracking.local.tissue_classifier' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/tissue_classifier.c -o build/temp.linux-aarch64-2.7/dipy/tracking/local/tissue_classifier.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/tissue_classifier.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/local/tissue_classifier.o -o build/lib.linux-aarch64-2.7/dipy/tracking/local/tissue_classifier.so -fopenmp cythoning dipy/tracking/local/interpolation.pyx to dipy/tracking/local/interpolation.c building 'dipy.tracking.local.interpolation' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/interpolation.c -o build/temp.linux-aarch64-2.7/dipy/tracking/local/interpolation.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/interpolation.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/local/interpolation.o -o build/lib.linux-aarch64-2.7/dipy/tracking/local/interpolation.so -fopenmp cythoning dipy/tracking/vox2track.pyx to dipy/tracking/vox2track.c building 'dipy.tracking.vox2track' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-aarch64-2.7/dipy/tracking/vox2track.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/vox2track.o -o build/lib.linux-aarch64-2.7/dipy/tracking/vox2track.so -fopenmp cythoning dipy/tracking/propspeed.pyx to dipy/tracking/propspeed.c warning: dipy/tracking/propspeed.pyx:134:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:134:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:135:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:45: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:370:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.propspeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-aarch64-2.7/dipy/tracking/propspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/tracking/propspeed.o -o build/lib.linux-aarch64-2.7/dipy/tracking/propspeed.so -fopenmp cythoning dipy/segment/cythonutils.pyx to dipy/segment/cythonutils.c building 'dipy.segment.cythonutils' extension creating build/temp.linux-aarch64-2.7/dipy/segment aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/cythonutils.c -o build/temp.linux-aarch64-2.7/dipy/segment/cythonutils.o -fopenmp aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/segment/cythonutils.o -o build/lib.linux-aarch64-2.7/dipy/segment/cythonutils.so -fopenmp cythoning dipy/segment/featurespeed.pyx to dipy/segment/featurespeed.c building 'dipy.segment.featurespeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/featurespeed.c -o build/temp.linux-aarch64-2.7/dipy/segment/featurespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/featurespeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/segment/featurespeed.o -o build/lib.linux-aarch64-2.7/dipy/segment/featurespeed.so -fopenmp cythoning dipy/segment/metricspeed.pyx to dipy/segment/metricspeed.c building 'dipy.segment.metricspeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/metricspeed.c -o build/temp.linux-aarch64-2.7/dipy/segment/metricspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/metricspeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/segment/metricspeed.o -o build/lib.linux-aarch64-2.7/dipy/segment/metricspeed.so -fopenmp cythoning dipy/segment/clusteringspeed.pyx to dipy/segment/clusteringspeed.c building 'dipy.segment.clusteringspeed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/clusteringspeed.c -o build/temp.linux-aarch64-2.7/dipy/segment/clusteringspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clusteringspeed.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/segment/clusteringspeed.o -o build/lib.linux-aarch64-2.7/dipy/segment/clusteringspeed.so -fopenmp cythoning dipy/segment/clustering_algorithms.pyx to dipy/segment/clustering_algorithms.c building 'dipy.segment.clustering_algorithms' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/segment/clustering_algorithms.c -o build/temp.linux-aarch64-2.7/dipy/segment/clustering_algorithms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clustering_algorithms.c:436: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/segment/clustering_algorithms.o -o build/lib.linux-aarch64-2.7/dipy/segment/clustering_algorithms.so -fopenmp cythoning dipy/denoise/denspeed.pyx to dipy/denoise/denspeed.c building 'dipy.denoise.denspeed' extension creating build/temp.linux-aarch64-2.7/dipy/denoise aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/denspeed.c -o build/temp.linux-aarch64-2.7/dipy/denoise/denspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/denspeed.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/denoise/denspeed.o -o build/lib.linux-aarch64-2.7/dipy/denoise/denspeed.so -fopenmp cythoning dipy/denoise/enhancement_kernel.pyx to dipy/denoise/enhancement_kernel.c building 'dipy.denoise.enhancement_kernel' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/enhancement_kernel.c -o build/temp.linux-aarch64-2.7/dipy/denoise/enhancement_kernel.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/enhancement_kernel.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/denoise/enhancement_kernel.o -o build/lib.linux-aarch64-2.7/dipy/denoise/enhancement_kernel.so -fopenmp cythoning dipy/denoise/shift_twist_convolution.pyx to dipy/denoise/shift_twist_convolution.c building 'dipy.denoise.shift_twist_convolution' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/denoise/shift_twist_convolution.c -o build/temp.linux-aarch64-2.7/dipy/denoise/shift_twist_convolution.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/shift_twist_convolution.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/denoise/shift_twist_convolution.c: In function ‘__pyx_f_4dipy_7denoise_23shift_twist_convolution_perform_convolution._omp_fn.0’: dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_z’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2868:12: note: ‘__pyx_v_z’ was declared here npy_intp __pyx_v_z; ^~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_y’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2867:12: note: ‘__pyx_v_y’ was declared here npy_intp __pyx_v_y; ^~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2866:12: note: ‘__pyx_v_x’ was declared here npy_intp __pyx_v_x; ^~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_orient’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2862:12: note: ‘__pyx_v_orient’ was declared here npy_intp __pyx_v_orient; ^~~~~~~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_cz’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2865:12: note: ‘__pyx_v_cz’ was declared here npy_intp __pyx_v_cz; ^~~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_cy’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2864:12: note: ‘__pyx_v_cy’ was declared here npy_intp __pyx_v_cy; ^~~~~~~~~~ dipy/denoise/shift_twist_convolution.c:3408:29: warning: ‘__pyx_v_cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_corient) lastprivate(__pyx_v_corient) lastprivate(__pyx_v_cx) lastprivate(__pyx_v_cy) lastprivate(__pyx_v_cz) lastprivate(__pyx_v_orient) lastprivate(__pyx_v_x) lastprivate(__pyx_v_y) lastprivate(__pyx_v_z) schedule(guided) ^~~ dipy/denoise/shift_twist_convolution.c:2863:12: note: ‘__pyx_v_cx’ was declared here npy_intp __pyx_v_cx; ^~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/denoise/shift_twist_convolution.o -o build/lib.linux-aarch64-2.7/dipy/denoise/shift_twist_convolution.so -fopenmp cythoning dipy/align/vector_fields.pyx to dipy/align/vector_fields.c building 'dipy.align.vector_fields' extension creating build/temp.linux-aarch64-2.7/dipy/align aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/vector_fields.c -o build/temp.linux-aarch64-2.7/dipy/align/vector_fields.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/vector_fields.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/vector_fields.o -o build/lib.linux-aarch64-2.7/dipy/align/vector_fields.so -fopenmp cythoning dipy/align/sumsqdiff.pyx to dipy/align/sumsqdiff.c building 'dipy.align.sumsqdiff' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/sumsqdiff.c -o build/temp.linux-aarch64-2.7/dipy/align/sumsqdiff.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/sumsqdiff.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/sumsqdiff.o -o build/lib.linux-aarch64-2.7/dipy/align/sumsqdiff.so -fopenmp cythoning dipy/align/expectmax.pyx to dipy/align/expectmax.c building 'dipy.align.expectmax' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/expectmax.c -o build/temp.linux-aarch64-2.7/dipy/align/expectmax.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/expectmax.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/expectmax.o -o build/lib.linux-aarch64-2.7/dipy/align/expectmax.so -fopenmp cythoning dipy/align/crosscorr.pyx to dipy/align/crosscorr.c building 'dipy.align.crosscorr' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/crosscorr.c -o build/temp.linux-aarch64-2.7/dipy/align/crosscorr.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/crosscorr.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/crosscorr.o -o build/lib.linux-aarch64-2.7/dipy/align/crosscorr.so -fopenmp cythoning dipy/align/bundlemin.pyx to dipy/align/bundlemin.c warning: dipy/align/bundlemin.pyx:288:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.align.bundlemin' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/bundlemin.c -o build/temp.linux-aarch64-2.7/dipy/align/bundlemin.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/bundlemin.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/align/bundlemin.c: In function ‘__pyx_pf_4dipy_5align_9bundlemin_2_bundle_minimum_distance._omp_fn.0’: dipy/align/bundlemin.c:3418:29: warning: ‘__pyx_v_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_j) lastprivate(__pyx_v_tmp) ^~~ dipy/align/bundlemin.c:3114:10: note: ‘__pyx_v_tmp’ was declared here double __pyx_v_tmp; ^~~~~~~~~~~ dipy/align/bundlemin.c:3418:29: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_j) lastprivate(__pyx_v_tmp) ^~~ dipy/align/bundlemin.c:3111:12: note: ‘__pyx_v_j’ was declared here npy_intp __pyx_v_j; ^~~~~~~~~ dipy/align/bundlemin.c: In function ‘__pyx_pf_4dipy_5align_9bundlemin__bundle_minimum_distance_matrix._omp_fn.1’: dipy/align/bundlemin.c:2760:29: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_j) ^~~ dipy/align/bundlemin.c:2582:12: note: ‘__pyx_v_j’ was declared here npy_intp __pyx_v_j; ^~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/bundlemin.o -o build/lib.linux-aarch64-2.7/dipy/align/bundlemin.so -fopenmp cythoning dipy/align/transforms.pyx to dipy/align/transforms.c building 'dipy.align.transforms' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/transforms.c -o build/temp.linux-aarch64-2.7/dipy/align/transforms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/transforms.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/transforms.o -o build/lib.linux-aarch64-2.7/dipy/align/transforms.so -fopenmp cythoning dipy/align/parzenhist.pyx to dipy/align/parzenhist.c building 'dipy.align.parzenhist' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -Ibuild -I/usr/include/python2.7 -c dipy/align/parzenhist.c -o build/temp.linux-aarch64-2.7/dipy/align/parzenhist.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/parzenhist.c:435: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/dipy/align/parzenhist.o -o build/lib.linux-aarch64-2.7/dipy/align/parzenhist.so -fopenmp running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_peak_extraction -> build/scripts-2.7 copying and adjusting bin/dipy_fit_tensor -> build/scripts-2.7 copying and adjusting bin/dipy_sh_estimate -> build/scripts-2.7 copying and adjusting bin/dipy_quickbundles -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_peak_extraction from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_tensor from 664 to 775 changing mode of build/scripts-2.7/dipy_sh_estimate from 664 to 775 changing mode of build/scripts-2.7/dipy_quickbundles from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh --buildsystem=python_distutils binary-arch --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testroot -a -O--buildsystem=python_distutils dh_prep -a -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install dh_auto_install: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py install --force --root=/<>/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_py running build_ext aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o /arch:SSE2 aarch64-linux-gnu-gcc: error: /arch:SSE2: No such file or directory Flags ['/arch:SSE2'] omitted because of compile or link error aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse aarch64-linux-gnu-gcc: error: unrecognized command line option ‘-msse2’ aarch64-linux-gnu-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-CzRYjo/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp skipping 'dipy/reconst/peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/recspeed.c' Cython extension (up-to-date) skipping 'dipy/reconst/vec_val_sum.c' Cython extension (up-to-date) skipping 'dipy/reconst/quick_squash.c' Cython extension (up-to-date) skipping 'dipy/tracking/distances.c' Cython extension (up-to-date) skipping 'dipy/tracking/streamlinespeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/localtrack.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/direction_getter.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/tissue_classifier.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/interpolation.c' Cython extension (up-to-date) skipping 'dipy/tracking/vox2track.c' Cython extension (up-to-date) skipping 'dipy/tracking/propspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/cythonutils.c' Cython extension (up-to-date) skipping 'dipy/segment/featurespeed.c' Cython extension (up-to-date) skipping 'dipy/segment/metricspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clusteringspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clustering_algorithms.c' Cython extension (up-to-date) skipping 'dipy/denoise/denspeed.c' Cython extension (up-to-date) skipping 'dipy/denoise/enhancement_kernel.c' Cython extension (up-to-date) skipping 'dipy/denoise/shift_twist_convolution.c' Cython extension (up-to-date) skipping 'dipy/align/vector_fields.c' Cython extension (up-to-date) skipping 'dipy/align/sumsqdiff.c' Cython extension (up-to-date) skipping 'dipy/align/expectmax.c' Cython extension (up-to-date) skipping 'dipy/align/crosscorr.c' Cython extension (up-to-date) skipping 'dipy/align/bundlemin.c' Cython extension (up-to-date) skipping 'dipy/align/transforms.c' Cython extension (up-to-date) skipping 'dipy/align/parzenhist.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/tmp creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python2.7 creating /<>/debian/tmp/usr/lib/python2.7/dist-packages creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/rng.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/onetime.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/histeq.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/tests/test_optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-aarch64-2.7/dipy/core/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/sphere_stats.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/profile.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-aarch64-2.7/dipy/core/sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/featurespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/clusteringspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_feature.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_qb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/tests/test_mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-aarch64-2.7/dipy/segment/metricspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-aarch64-2.7/dipy/segment/benchmarks/bench_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-aarch64-2.7/dipy/segment/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-aarch64-2.7/dipy/segment/quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/clustering_algorithms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/threshold.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-aarch64-2.7/dipy/segment/cythonutils.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-aarch64-2.7/dipy/external/fsl.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-aarch64-2.7/dipy/external/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-aarch64-2.7/dipy/external/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/trackvis.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/tests/test_dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/tests/test_io_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/tests/test_bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-aarch64-2.7/dipy/io/pickles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/io/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-aarch64-2.7/dipy/COMMIT_INFO.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-aarch64-2.7/dipy/__config__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-aarch64-2.7/dipy/info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-aarch64-2.7/dipy/utils/optpkg.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-aarch64-2.7/dipy/utils/arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-aarch64-2.7/dipy/utils/tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-aarch64-2.7/dipy/utils/tests/test_tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-aarch64-2.7/dipy/utils/tests/test_arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-aarch64-2.7/dipy/utils/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-aarch64-2.7/dipy/utils/six.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-aarch64-2.7/dipy/utils/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-aarch64-2.7/dipy/utils/_importlib.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-aarch64-2.7/dipy/tests/test_scripts.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-aarch64-2.7/dipy/tests/scriptrunner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-aarch64-2.7/dipy/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-aarch64-2.7/dipy/pkg_info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-aarch64-2.7/dipy/fixes/scipy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-aarch64-2.7/dipy/fixes/argparse.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-aarch64-2.7/dipy/fixes/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-aarch64-2.7/dipy/direction/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-aarch64-2.7/dipy/direction/tests/test_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-aarch64-2.7/dipy/direction/tests/test_prob_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-aarch64-2.7/dipy/direction/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-aarch64-2.7/dipy/direction/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-aarch64-2.7/dipy/direction/probabilistic_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/expectmax.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/crosscorr.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/vector_fields.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_transforms.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_vector_fields.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_parzenhist.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_crosscorr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_expectmax.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/tests/test_sumsqdiff.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-aarch64-2.7/dipy/align/parzenhist.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/transforms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/bundlemin.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-aarch64-2.7/dipy/align/sumsqdiff.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/cb_2.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/dsi515_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/gtab_isbi2013_2shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/tracks300.trk -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/55dir_grad.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_64D.gradients.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_64D.nii -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/eg_3voxels.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_101D.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/aniso_vox.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/C.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_25.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/grad_514.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/fib1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/life_matlab_weights.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/func_coef.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/func_discrete.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/t1_coronal_slice.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/fib2.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_64D.bvals.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/dsi4169_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_25.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/repulsion724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/S0_10slices.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_101D.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/circle.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/dipy_colormaps.json -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/gtab_taiwan_dsi.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/C3.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/evenly_distributed_sphere_362.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_25.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/evenly_distributed_sphere_724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/fib0.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/life_matlab_rmse.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/C1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/ScannerVectors_GQI101.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/gtab_3shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/test_piesno.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/55dir_grad.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/repulsion100.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/small_101D.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/evenly_distributed_sphere_642.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/files/sphere_grad.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-aarch64-2.7/dipy/data/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-aarch64-2.7/dipy/data/fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/reconst.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/tests/test_docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/tests/test_iap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/tests/test_segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-aarch64-2.7/dipy/workflows/docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-aarch64-2.7/dipy/workflows/tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/local/interpolation.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/local/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/local/tests/test_tissue_classifier.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/local/tests/test_local_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/local/localtrack.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/local/tissue_classifier.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/local/localtracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/local/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/local/direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-aarch64-2.7/dipy/tracking/gui_tools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/eudx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_track_volumes.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_localtrack.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_propagation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_distances.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_markov.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/tests/test_life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-aarch64-2.7/dipy/tracking/distances.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-aarch64-2.7/dipy/tracking/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-aarch64-2.7/dipy/tracking/benchmarks/bench_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-aarch64-2.7/dipy/tracking/markov.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/streamlinespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/interfaces.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/propspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-aarch64-2.7/dipy/tracking/vox2track.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-aarch64-2.7/dipy/denoise/noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/tests/test_denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/tests/test_nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/tests/test_noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/tests/test_kernel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-aarch64-2.7/dipy/denoise/nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-aarch64-2.7/dipy/denoise/denspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-aarch64-2.7/dipy/denoise/shift_twist_convolution.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-aarch64-2.7/dipy/denoise/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-aarch64-2.7/dipy/denoise/enhancement_kernel.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/quick_squash.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_peakdf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_shore_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_shore_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_reco_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_peak_finding.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_shore_fitting.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/tests/test_mapmri_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-aarch64-2.7/dipy/reconst/vec_val_sum.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/bench_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/bench_squash.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-aarch64-2.7/dipy/reconst/recspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/reconst/multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-aarch64-2.7/dipy/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-aarch64-2.7/dipy/sims/phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-aarch64-2.7/dipy/sims/voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-aarch64-2.7/dipy/sims/tests/test_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-aarch64-2.7/dipy/sims/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-aarch64-2.7/dipy/sims/tests/test_phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-aarch64-2.7/dipy/sims/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-aarch64-2.7/dipy/testing/spherepoints.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-aarch64-2.7/dipy/testing/tests/test_decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-aarch64-2.7/dipy/testing/tests/test_memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-aarch64-2.7/dipy/testing/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-aarch64-2.7/dipy/testing/memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-aarch64-2.7/dipy/testing/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-aarch64-2.7/dipy/testing/decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-aarch64-2.7/dipy/boots/resampling.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-aarch64-2.7/dipy/boots/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/colormap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/actor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/projections.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_fvtk_actors.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_fvtk_window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_fvtk_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_fvtk_widgets.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/tests/test_regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-aarch64-2.7/dipy/viz/regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/widget.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-aarch64-2.7/dipy/viz/window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz running install_scripts creating /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_sh_estimate -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_quickbundles -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_peak_extraction -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_tensor -> /<>/debian/tmp/usr/bin changing mode of /<>/debian/tmp/usr/bin/dipy_sh_estimate to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_quickbundles to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_peak_extraction to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_tensor to 775 running install_data creating /<>/debian/tmp/usr/share creating /<>/debian/tmp/usr/share/doc creating /<>/debian/tmp/usr/share/doc/dipy creating /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/piesno.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_slice.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_bundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/affine_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_2d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/deterministic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/contextual_enhancement.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/introduction_to_basic_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_mapmri.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_tissue_classifier.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_extending_clustering_framework.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/linear_fascicle_evaluation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_nlmeans.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_advanced.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_reconst.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_features.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_widgets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/bundle_registration.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/kfold_xval.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.11.0.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/doc/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/<>/build HOME=/<>/build; \ cd doc; /usr/bin/make html-after-examples SPHINXOPTS="-D today=\"February 22, 2016\"" make[2]: Entering directory '/<>/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="February 22, 2016" . _build/html Running Sphinx v1.5.6 making output directory... WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead. Initializing GitHub plugin loading pickled environment... not yet created WARNING: latex_preamble is deprecated. Define a latex_elements dict with a 'preamble' key. loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused',))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 95 source files that are out of date updating environment: 95 added, 0 changed, 0 removed reading sources... [ 1%] api_changes reading sources... [ 2%] cite reading sources... [ 3%] dependencies reading sources... 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[100%] theory/spherical /<>/doc/devel/make_release.rst:78: ERROR: Unknown target name: "nipy buildbot". /<>/doc/devel/make_release.rst:80: ERROR: Unknown target name: "travis-ci". /<>/doc/devel/make_release.rst:163: ERROR: Unknown target name: "pypi". /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference/index' /<>/doc/examples_built/affine_registration_3d.rst:82: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:118: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:230: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:268: WARNING: Literal block expected; none found. /<>/doc/examples_built/contextual_enhancement.rst:77: WARNING: Literal block expected; none found. /<>/doc/examples_built/contextual_enhancement.rst:178: WARNING: Literal block expected; none found. /<>/doc/examples_built/gradients_spheres.rst:52: WARNING: Inline literal start-string without end-string. /<>/doc/examples_built/introduction_to_basic_tracking.rst:26: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:132: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:156: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:61: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:102: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:181: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:208: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:306: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:363: WARNING: Literal block expected; none found. /<>/doc/examples_built/piesno.rst:108: ERROR: Unexpected indentation. /<>/doc/examples_built/reconst_dki.rst:227: ERROR: Error in "figure" directive: invalid option block. .. figure:: Diffusion_tensor_measures_from_DTI_and_DKI.png :align: center **Diffusion tensor measures obtain from the diffusion tensor estimated from DKI (upper panels) and DTI (lower panels).**. /<>/doc/examples_built/reconst_dki.rst:274: ERROR: Error in "figure" directive: invalid option block. .. figure:: Kurtosis_tensor_standard_measures.png :align: center **Kurtosis tensor standard measures obtain from the kurtosis tensor.**. /<>/doc/examples_built/reconst_dsid.rst:24: ERROR: Unexpected indentation. /<>/doc/examples_built/reconst_shore_metrics.rst:131: WARNING: duplicate citation Descoteaux2011, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:135: WARNING: duplicate citation Wu2007, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:138: WARNING: duplicate citation Wu2008, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/segment_clustering_metrics.rst:167: WARNING: Duplicate explicit target name: "clustering-examples-minimumaveragedirectflipmetric". /<>/doc/examples_built/segment_clustering_metrics.rst:217: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_features.rst /<>/doc/examples_built/segment_quickbundles.rst:167: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_metrics.rst /<>/doc/examples_built/sfm_tracking.rst:179: WARNING: duplicate citation Rokem2015, other instance in /<>/doc/examples_built/sfm_reconst.rst /<>/doc/examples_built/simulate_multi_tensor.rst:89: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:120: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:181: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:194: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:49: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:99: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:116: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:134: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:241: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:258: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:271: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/affine_registration_3d.rst /<>/doc/examples_built/syn_registration_3d.rst:104: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:155: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:169: WARNING: duplicate citation Avants09, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/syn_registration_3d.rst:170: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/tracking_eudx_odf.rst:121: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_quickbundles.rst /<>/doc/examples_built/tracking_eudx_tensor.rst:160: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/tracking_eudx_odf.rst /<>/doc/examples_built/tracking_quick_start.rst:203: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/tracking_eudx_tensor.rst /<>/doc/examples_built/tracking_tissue_classifier.rst:148: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:216: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:335: WARNING: Literal block expected; none found. /<>/doc/examples_built/viz_bundles.rst:208: ERROR: Error in "figure" directive: invalid option block. .. figure:: bundle5.png :align: center **Color every streamline by the length of the streamline ** /<>/doc/examples_index.rst:81: WARNING: Title underline too short. Diffusion Kurtosis Imaging (NEW) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/examples_index.rst:81: WARNING: Title underline too short. Diffusion Kurtosis Imaging (NEW) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/gimbal_lock.rst:27: WARNING: image file not readable: images/spitfire_0.png /<>/doc/gimbal_lock.rst:32: WARNING: image file not readable: images/spitfire_x.png /<>/doc/gimbal_lock.rst:37: WARNING: image file not readable: images/spitfire_y.png /<>/doc/gimbal_lock.rst:42: WARNING: image file not readable: images/spitfire_hoped.png /<>/doc/old_news.rst:10: ERROR: Unknown target name: "journal paper". /<>/doc/old_news.rst:14: ERROR: Unknown target name: "dipy paper". /<>/doc/release0.6.rst:55: ERROR: Unknown target name: "squash". /<>/doc/release0.6.rst:165: ERROR: Unknown target name: "squash". /<>/doc/release0.7.rst:88: ERROR: Unknown target name: "tensor". looking for now-outdated files... none found pickling environment... done checking consistency... /<>/doc/dependencies.rst:: WARNING: document isn't included in any toctree /<>/doc/devel/gitwash/dot2_dot3.rst:: WARNING: document isn't included in any toctree 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The HTML pages are in _build/html. make[2]: Leaving directory '/<>/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory debian/rules:75: recipe for target 'override_dh_auto_install' failed make[1]: [override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/<>/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude test_peaksFromModelParallel dipy; \ done I: Running Dipy unittests using python2.7 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:45: UserWarning: sklearn is not available, you can use 'nnls' method to fit the SparseFascicleModel warnings.warn(w) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/docstring_parser.py:145: UserWarning: Unknown section Yields warn("Unknown section %s" % key) Compares the output of the optimized function to compute the cross- ... ok Compares the output of the optimized function to compute the cross- ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_2d ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_expectmax.test_quantize_positive_2d ... ok dipy.align.tests.test_expectmax.test_quantize_positive_3d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_2d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_3d ... ok dipy.align.tests.test_imaffine.test_transform_centers_of_mass_3d ... ok dipy.align.tests.test_imaffine.test_transform_geometric_centers_3d ... ok dipy.align.tests.test_imaffine.test_transform_origins_3d ... ok dipy.align.tests.test_imaffine.test_affreg_all_transforms ... ok dipy.align.tests.test_imaffine.test_affreg_defaults ... ok dipy.align.tests.test_imaffine.test_mi_gradient ... ok dipy.align.tests.test_imaffine.test_affine_map ... ok dipy.align.tests.test_imaffine.test_MIMetric_invalid_params ... ok Test matrix multiplication using None as identity ... ok Test 2D DiffeomorphicMap ... ok Test simplification of 2D diffeomorphic maps ... ok Test simplification of 3D diffeomorphic maps ... ok Test exceptions from SyN ... ok Test direction and spacings from affine transforms ... ok Test 2D SyN with SSD metric, demons-like optimizer ... Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 2)>>0.995530 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 3)>>0.960066 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 2)>>0.998993 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 3)>>0.999780 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 2)>>0.999884 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 3)>>0.999642 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 2)>>0.997823 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 3)>>0.993422 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 2)>>0.997435 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 3)>>0.999297 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 148.967083 148.967083 297.934166 inf 2: 140.803789 140.803789 281.607577 inf 3: 132.911776 132.911776 265.823551 inf 4: 123.231999 123.231999 246.463997 inf 5: 114.722135 114.722135 229.444269 inf 6: 107.066895 107.066895 214.133789 inf 7: 102.035943 102.035943 204.071887 inf 8: 96.646767 96.646767 193.293534 inf 9: 89.674500 89.674500 179.349000 inf 10: 81.181151 81.181151 162.362302 inf 11: 75.765548 75.765548 151.531095 inf 12: 71.448278 71.448278 142.896556 0.00527900129756 13: 68.103093 68.103093 136.206185 0.00538551128291 14: 64.869063 64.869063 129.738127 0.00538217741931 15: 62.595061 62.595061 125.190122 0.00529894244928 16: 58.781632 58.781632 117.563263 0.00510648777591 17: 56.600046 56.600046 113.200092 0.00495916074255 18: 53.238731 53.238731 106.477463 0.0047645234269 19: 51.677355 51.677355 103.354709 0.00461568677843 20: 49.654621 49.654621 99.309242 0.00435743030392 21: 49.086650 49.086650 98.173299 0.00406536210423 22: 47.099318 47.099318 94.198635 0.00370473902637 23: 46.583460 46.583460 93.166920 0.00347969901492 24: 44.167176 44.167176 88.334352 0.00321264505233 25: 44.105006 44.105006 88.210012 0.00306888165425 26: 41.817988 41.817988 83.635977 0.00281825494168 27: 42.280137 42.280137 84.560273 0.00269599978528 28: 40.373037 40.373037 80.746075 0.00241258184945 29: 40.929566 40.929566 81.859132 0.00229636684975 30: 38.793769 38.793769 77.587538 0.00204200026644 31: 39.270946 39.270946 78.541891 0.00201002212417 32: 37.058236 37.058236 74.116471 0.00184073004532 33: 37.857003 37.857003 75.714007 0.00187295393419 34: 35.392249 35.392249 70.784499 0.00169410061597 35: 36.346224 36.346224 72.692448 0.00176892940958 36: 33.366015 33.366015 66.732030 0.00161084193361 37: 34.626740 34.626740 69.253480 0.00180609961394 38: 31.657261 31.657261 63.314522 0.0016915219524 39: 33.291087 33.291087 66.582175 0.00193635182015 40: 30.898098 30.898098 61.796197 0.0017823801644 41: 32.607002 32.607002 65.214004 0.00191966443357 42: 30.491445 30.491445 60.982890 0.00165172870056 43: 32.109173 32.109173 64.218346 0.00168978551442 44: 29.815562 29.815562 59.631123 0.00135708964951 45: 31.567858 31.567858 63.135715 0.00139854109557 46: 29.123278 29.123278 58.246556 0.00103999297418 47: 30.770183 30.770183 61.540365 0.00112624759631 48: 28.418630 28.418630 56.837260 0.000819533307962 49: 29.972726 29.972726 59.945451 0.000995721907071 50: 27.698646 27.698646 55.397293 0.000767385426075 51: 29.073102 29.073102 58.146205 0.00102009652449 52: 26.763315 26.763315 53.526630 0.000858641460255 53: 28.288307 28.288307 56.576614 0.00114772293448 54: 25.746394 25.746394 51.492787 0.000975498879659 55: 26.884172 26.884172 53.768344 0.0012793626104 56: 24.718008 24.718008 49.436015 0.00116605753713 57: 25.901019 25.901019 51.802037 0.00147184294269 58: 23.963023 23.963023 47.926047 0.00132523055452 59: 25.099333 25.099333 50.198667 0.00158080526488 60: 23.193437 23.193437 46.386873 0.00139065563341 61: 24.386968 24.386968 48.773936 0.00160893991867 62: 22.611351 22.611351 45.222702 0.00136958898381 63: 23.876779 23.876779 47.753557 0.00153369189462 64: 22.131482 22.131482 44.262964 0.00123946135946 65: 23.519546 23.519546 47.039091 0.00137664172521 66: 21.741024 21.741024 43.482048 0.00102357626682 67: 23.119691 23.119691 46.239381 0.00116204148442 68: 21.285907 21.285907 42.571815 0.000844295268903 69: 22.573433 22.573433 45.146865 0.00102392104871 70: 20.836075 20.836075 41.672150 0.000756025619086 71: 22.050224 22.050224 44.100448 0.000960396404725 72: 20.359325 20.359325 40.718650 0.000728971221841 73: 21.397462 21.397462 42.794923 0.000967117658321 74: 19.820300 19.820300 39.640599 0.000789644096338 75: 20.852914 20.852914 41.705829 0.00104756765157 76: 19.226703 19.226703 38.453407 0.000871877739317 77: 20.285123 20.285123 40.570246 0.00114513680102 78: 18.780324 18.780324 37.560649 0.000953042711699 79: 19.774091 19.774091 39.548183 0.00119514718828 80: 18.143954 18.143954 36.287909 0.000979800458883 81: 18.840576 18.840576 37.681152 0.00124352027625 82: 17.665759 17.665759 35.331518 0.00110652877515 83: 19.387817 19.387817 38.775635 0.00132915242677 84: 17.047626 17.047626 34.095251 0.000919468064403 85: 16.662591 16.662591 33.325181 0.00120709162082 86: 17.260811 17.260811 34.521622 0.00134996680547 87: 17.874476 17.874476 35.748952 0.00136967438414 88: 16.630472 16.630472 33.260944 0.00105049822581 89: 17.861582 17.861582 35.723164 0.00117092649015 90: 16.147976 16.147976 32.295952 0.000777853183625 91: 16.638556 16.638556 33.277112 0.000967437272791 92: 16.075657 16.075657 32.151314 0.000821057681922 93: 17.510709 17.510709 35.021418 0.000940538530509 94: 15.640950 15.640950 31.281900 0.000529698946323 95: 15.864610 15.864610 31.729219 0.000758630865987 96: 15.825708 15.825708 31.651416 0.000640145203787 97: 17.116943 17.116943 34.233886 0.00074154573609 98: 15.446541 15.446541 30.893083 0.00048132734315 99: 16.140918 16.140918 32.281836 0.000628141285922 100: 15.475190 15.475190 30.950380 0.00043980946457 101: 17.197799 17.197799 34.395599 0.000562483873281 102: 14.948148 14.948148 29.896297 1.52293312762e-05 Optimizing level 2 0: 72.248800 72.248800 144.497600 inf 1: 63.694569 63.694569 127.389138 inf 2: 58.563393 58.563393 117.126786 inf 3: 52.533571 52.533571 105.067141 inf 4: 46.456073 46.456073 92.912147 inf 5: 40.827801 40.827801 81.655603 inf 6: 35.419773 35.419773 70.839546 inf 7: 31.203512 31.203512 62.407024 inf 8: 27.613073 27.613073 55.226145 inf 9: 24.378285 24.378285 48.756569 inf 10: 21.562716 21.562716 43.125432 inf 11: 19.428982 19.428982 38.857964 inf 12: 17.851090 17.851090 35.702179 0.00924326968689 13: 16.687521 16.687521 33.375043 0.00920360887306 14: 14.974659 14.974659 29.949319 0.00904714605548 15: 13.848505 13.848505 27.697011 0.00879530618558 16: 13.885130 13.885130 27.770259 0.00843212899977 17: 12.679446 12.679446 25.358893 0.00778151210883 18: 12.483789 12.483789 24.967578 0.0071933473816 19: 10.702818 10.702818 21.405636 0.00649882451047 20: 10.997215 10.997215 21.994429 0.00616115947787 21: 10.435592 10.435592 20.871185 0.00558256937827 22: 10.598348 10.598348 21.196697 0.00510221288964 23: 9.448242 9.448242 18.896485 0.00450520168154 24: 9.598963 9.598963 19.197925 0.00427990697403 25: 8.602873 8.602873 17.205747 0.00388152923494 26: 8.643478 8.643478 17.286956 0.00378032242143 27: 8.111074 8.111074 16.222148 0.00362147306946 28: 7.977508 7.977508 15.955017 0.00361878361533 29: 7.534404 7.534404 15.068807 0.003407825303 30: 8.039894 8.039894 16.079788 0.00337593574216 31: 6.556365 6.556365 13.112729 0.00287989661091 32: 6.193153 6.193153 12.386305 0.00332599013375 33: 6.878564 6.878564 13.757127 0.00362438355098 34: 6.585455 6.585455 13.170910 0.00334700328642 35: 6.423690 6.423690 12.847379 0.00301330885011 36: 6.197171 6.197171 12.394342 0.00283957558094 37: 6.493677 6.493677 12.987353 0.00258977383659 38: 6.114156 6.114156 12.228312 0.00221371116007 39: 6.260500 6.260500 12.521001 0.00196680109175 40: 5.834588 5.834588 11.669177 0.00162771343077 41: 5.923918 5.923918 11.847836 0.00152756418449 42: 5.922440 5.922440 11.844880 0.00136120804108 43: 5.346758 5.346758 10.693515 0.000959586358977 44: 4.792660 4.792660 9.585320 0.00135776057264 45: 5.689377 5.689377 11.378755 0.0021116721564 46: 5.366ok Test 2D SyN with SSD metric, Gauss-Newton optimizer ... 984 5.366984 10.733969 0.00173475847455 47: 4.955484 4.955484 9.910967 0.00164273071672 48: 4.955399 4.955399 9.910798 0.00182384987039 49: 5.098480 5.098480 10.196960 0.00191673110959 50: 4.557398 4.557398 9.114797 0.00165553102171 51: 5.123058 5.123058 10.246116 0.00188181097513 52: 5.138998 5.138998 10.277996 0.00140128785298 53: 4.702002 4.702002 9.404003 0.0010239726885 54: 4.306922 4.306922 8.613843 0.000974036324552 55: 4.953949 4.953949 9.907898 0.00118244372851 56: 4.920203 4.920203 9.840407 0.000871033197509 57: 4.335598 4.335598 8.671197 0.000799111850044 58: 4.821064 4.821064 9.642128 0.000896467829639 59: 4.304453 4.304453 8.608906 0.000554570996173 60: 4.148121 4.148121 8.296241 0.000859930623069 61: 4.650973 4.650973 9.301947 0.00119551108178 62: 5.001413 5.001413 10.002826 0.000855016937574 63: 4.142651 4.142651 8.285302 0.000406546692793 64: 4.488396 4.488396 8.976792 0.000622577913421 65: 4.483512 4.483512 8.967024 0.000384635348267 66: 5.174678 5.174678 10.349356 0.000325265436729 67: 4.236928 4.236928 8.473855 -0.000241240514946 Optimizing level 1 0: 39.966310 39.966310 79.932621 inf 1: 27.524788 27.524788 55.049577 inf 2: 21.630615 21.630615 43.261231 inf 3: 18.581591 18.581591 37.163183 inf 4: 19.808847 19.808847 39.617693 inf 5: 18.013326 18.013326 36.026652 inf 6: 18.462854 18.462854 36.925708 inf 7: 17.809485 17.809485 35.618971 inf 8: 17.580996 17.580996 35.161992 inf 9: 17.711175 17.711175 35.422350 inf 10: 16.921854 16.921854 33.843709 inf 11: 17.806941 17.806941 35.613883 inf 12: 16.520959 16.520959 33.041917 0.00390234347759 13: 18.104083 18.104083 36.208165 0.00219685281428 14: 16.435215 16.435215 32.870429 0.00101645052961 15: 18.848988 18.848988 37.697976 0.000845564821852 16: 16.659701 16.659701 33.319403 0.000316982787714 17: 20.577135 20.577135 41.154271 0.000279855134303 18: 17.293717 17.293717 34.587434 -0.000579168643026 Optimizing level 0 0: 97.973314 97.973314 195.946628 inf 1: 77.616086 77.616086 155.232172 inf 2: 67.877201 67.877201 135.754402 inf 3: 63.680455 63.680455 127.360909 inf 4: 60.764592 60.764592 121.529184 inf 5: 58.006709 58.006709 116.013418 inf 6: 56.083126 56.083126 112.166252 inf 7: 53.889975 53.889975 107.779950 inf 8: 52.428426 52.428426 104.856852 inf 9: 50.353724 50.353724 100.707448 inf 10: 49.310285 49.310285 98.620570 inf 11: 47.609993 47.609993 95.219986 inf 12: 46.703940 46.703940 93.407880 0.00412063995894 13: 45.706191 45.706191 91.412382 0.00321860261022 14: 44.280339 44.280339 88.560679 0.00276751988269 15: 43.982904 43.982904 87.965808 0.00256407850265 16: 43.001829 43.001829 86.003658 0.00234949343298 17: 42.809756 42.809756 85.619512 0.00217276184313 18: 42.198460 42.198460 84.396919 0.00196809484448 19: 42.289098 42.289098 84.578195 0.00177033437033 20: 41.382289 41.382289 82.764578 0.00153628029263 21: 42.058835 42.058835 84.117670 0.0013630684746 22: 40.353948 40.353948 80.707895 0.0011189230298 23: 41.969392 41.969392 83.938784 0.00103922847458 24: 39.328130 39.328130 78.656259 0.000786269447202 Static-Reference Residual error: 0.006058 (0.000195) Moving-Reference Residual error :0.005517 (0.000170) Final residual error: 0.142656 (0.095738) Pre-align: [[ 1. 0. 0.] [ 0. 1. 0.] [ 0. 0. 1.]] Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 140.425137 140.425137 280.850273 inf 2: 122.632717 122.632717 245.265433 inf 3: 107.533624 107.533624 215.067248 inf 4: 95.957127 95.957127 191.914253 inf 5: 82.847331 82.847331 165.694663 inf 6: 71.216589 71.216589 142.433178 inf 7: 63.804336 63.804336 127.608672 inf 8: 54.921843 54.921843 109.843686 inf 9: 45.509381 45.509381 91.018761 inf 10: 39.685490 39.685490 79.370980 inf 11: 35.088915 35.088915 70.177829 inf 12: 29.560402 29.560402 59.120805 0.0102528290918 13: 25.559512 25.559512 51.119023 0.0104618758347 14: 22.480693 22.480693 44.961387 0.0106048529083 15: 19.647795 19.647795 39.295589 0.0107012323565 16: 17.522935 17.522935 35.045869 0.0107498639909 17: 15.905991 15.905991 31.811983 0.0106623563228 18: 14.572590 14.572590 29.145180 0.0104793425628 19: 12.783410 12.783410 25.566821 0.0101986972873 20: 11.607882 11.607882 23.215765 0.00983910941086 21: 11.152276 11.152276 22.304552 0.009431011778 22: 10.661634 10.661634 21.323268 0.00895386457304 23: 11.037056 11.037056 22.074113 0.008327490255 24: 12.499733 12.499733 24.999466 0.00730827466245 25: 14.954526 14.954526 29.909051 0.00574650197257 26: 12.461237 12.461237 24.922474 0.00340382811207 27: 13.527777 13.527777 27.055554 0.00214078929779 28: 12.473630 12.473630 24.947261 0.000733528152525 29: 13.627387 13.627387 27.254774 6.46857149584e-06 Optimizing level 2 0: 61.023019 61.023019 122.046039 inf 1: 56.538447 56.538447 113.076893 inf 2: 49.981503 49.981503 99.963005 inf 3: 48.064184 48.064184 96.128368 inf 4: 42.887603 42.887603 85.775206 inf 5: 43.089590 43.089590 86.179179 inf 6: 37.320460 37.320460 74.640919 inf 7: 39.874221 39.874221 79.748442 inf 8: 34.029064 34.029064 68.058128 inf 9: 36.929952 36.929952 73.859903 inf 10: 32.223323 32.223323 64.446645 inf 11: 34.359234 34.359234 68.718467 inf 12: 28.346886 28.346886 56.693771 0.00420675209614 13: 31.255763 31.255763 62.511525 0.00416304569665 14: 26.086055 26.086055 52.172110 0.00361112048427 15: 29.563715 29.563715 59.127430 0.00377827842694 16: 23.307039 23.307039 46.614077 0.0032591466373 17: 27.891946 27.891946 55.783891 0.00368162197028 18: 20.164353 20.164353 40.328707 0.00310430005417 19: 23.480334 23.480334 46.960669 0.00385265762585 20: 18.019185 18.019185 36.038370 0.00357240326547 21: 23.274665 23.274665 46.549330 0.00432190160261 22: 16.053472 16.053472 32.106944 0.00359601522999 23: 20.910947 20.910947 41.821893 0.00433008453035 24: 15.866897 15.866897 31.733794 0.00359579981462 25: 21.338256 21.338256 42.676513 0.00412369584983 26: 13.157272 13.157272 26.314544 0.00294608444691 27: 18.611533 18.611533 37.223066 0.00386892583239 28: 12.198406 12.198406 24.396813 0.00286640374918 29: 19.696929 19.696929 39.393857 0.0038082464872 30: 10.539982 10.539982 21.079964 0.00208781263522 31: 18.714062 18.7ok Test 3D SyN with SSD metric, demons-like optimizer ... ok Test 3D SyN with SSD metric, Gauss-Newton optimizer ... 14062 37.428124 0.00347633006436 32: 11.179917 11.179917 22.359833 0.00193953328331 33: 18.230947 18.230947 36.461894 0.00306891390178 34: 11.677378 11.677378 23.354755 0.00131333714442 35: 19.931138 19.931138 39.862277 0.00232807070397 36: 11.077569 11.077569 22.155137 0.000136472632591 37: 14.906760 14.906760 29.813520 0.00137160453003 38: 15.548861 15.548861 31.097721 0.000502503645546 39: 16.916952 16.916952 33.833904 0.00048776108408 40: 12.899454 12.899454 25.798909 -0.000588576015399 Optimizing level 1 0: 107.141946 107.141946 214.283893 inf 1: 41.491577 41.491577 82.983154 inf 2: 24.573824 24.573824 49.147648 inf 3: 42.287160 42.287160 84.574320 inf 4: 20.136375 20.136375 40.272751 inf 5: 43.373414 43.373414 86.746828 inf 6: 22.206918 22.206918 44.413835 inf 7: 46.128414 46.128414 92.256829 inf 8: 22.917985 22.917985 45.835971 inf 9: 45.618174 45.618174 91.236348 inf 10: 23.723042 23.723042 47.446084 inf 11: 46.652033 46.652033 93.304066 inf 12: 25.011977 25.011977 50.023955 0.00268044845854 13: 48.731737 48.731737 97.463474 0.000150454984375 14: 26.572179 26.572179 53.144358 -0.00223537438159 Optimizing level 0 0: 188.748950 188.748950 377.497900 inf 1: 71.252065 71.252065 142.504130 inf 2: 65.437910 65.437910 130.875820 inf 3: 64.852725 64.852725 129.705451 inf 4: 67.833952 67.833952 135.667904 inf 5: 71.087627 71.087627 142.175254 inf 6: 65.802222 65.802222 131.604445 inf 7: 71.175477 71.175477 142.350953 inf 8: 65.819184 65.819184 131.638368 inf 9: 72.965076 72.965076 145.930152 inf 10: 65.748948 65.748948 131.497896 inf 11: 74.863204 74.863204 149.726409 inf 12: 65.631629 65.631629 131.263258 0.00273151581152 13: 76.748116 76.748116 153.496231 -0.000191800496608 Static-Reference Residual error: 0.006379 (0.000205) Moving-Reference Residual error :0.010462 (0.000995) Final residual error: 0.148848 (0.110917) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 156.113535 156.113535 312.227070 inf 1: 123.101970 123.101970 246.203940 inf 2: 94.813392 94.813392 189.626783 inf 3: 69.698898 69.698898 139.397796 inf 4: 47.676422 47.676422 95.352845 inf 5: 30.880878 30.880878 61.761755 inf 6: 17.776673 17.776673 35.553346 inf 7: 8.917742 8.917742 17.835483 inf 8: 4.242015 4.242015 8.484029 inf 9: 4.342364 4.342364 8.684729 inf Optimizing level 0 0: 77.188725 77.188725 154.377450 inf 1: 61.331893 61.331893 122.663785 inf 2: 53.209723 53.209723 106.419447 inf 3: 48.395036 48.395036 96.790073 inf 4: 46.099775 46.099775 92.199550 inf 5: 44.025843 44.025843 88.051686 inf 6: 44.818809 44.818809 89.637618 inf 7: 40.550857 40.550857 81.101714 inf 8: 42.317720 42.317720 84.635440 inf 9: 40.105995 40.105995 80.211991 inf Static-Reference Residual error: 0.004046 (0.000026) Moving-Reference Residual error :0.003924 (0.000027) Final residual error: 0.004805 (0.000069) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma faok Test 2D SyN with CC metric ... ctor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 174.160236 174.160236 348.320472 inf 1: 129.301704 129.301704 258.603408 inf 2: 90.003685 90.003685 180.007370 inf 3: 62.023355 62.023355 124.046710 inf 4: 44.031650 44.031650 88.063299 inf 5: 30.138085 30.138085 60.276171 inf 6: 19.769585 19.769585 39.539169 inf 7: 12.200860 12.200860 24.401719 inf 8: 7.030166 7.030166 14.060331 inf 9: 3.932361 3.932361 7.864722 inf Optimizing level 0 0: 50.431378 50.431378 100.862755 inf 1: 42.406364 42.406364 84.812727 inf 2: 34.634417 34.634417 69.268834 inf 3: 27.500054 27.500054 55.000108 inf 4: 22.276237 22.276237 44.552474 inf 5: 18.144728 18.144728 36.289457 inf 6: 14.831818 14.831818 29.663635 inf 7: 12.606339 12.606339 25.212678 inf 8: 14.069022 14.069022 28.138044 inf 9: 13.291476 13.291476 26.582952 inf Static-Reference Residual error: 0.002930 (0.000043) Moving-Reference Residual error :0.002968 (0.000045) Final residual error: 0.004096 (0.000111) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Optimizing level 1 0: -2470.850522 -2470.850522 -4941.701045 inf 1: -2809.035391 -2809.035391 -5618.070783 inf 2: -3097.929180 -3097.929180 -6195.858360 inf 3: -3314.948446 -3314.948446 -6629.896893 inf 4: -3487.392000 -3487.392000 -6974.784000 inf 5: -3687.198100 -3687.198100 -7374.396200 inf 6: -3901.419800 -3901.419800 -7802.839600 inf 7: -4062.786802 -4062.786802 -8125.573603 inf 8: -4204.035022 -4204.035022 -8408.070044 inf 9: -4317.120683 -4317.120683 -8634.241367 inf 10: -4400.328948 -4400.328948 -8800.657896 inf 11: -4472.480246 -4472.480246 -8944.960493 inf 12: -4533.762530 -4533.762530 -9067.525059 0.00381066805447 13: -4576.180550 -4576.180550 -9152.361100 0.00317135627435 14: -4601.501231 -4601.501231 -9203.002462 0.00264119987365 Optimizing level 0 0: -15604.348537 -15604.348537 -31208.697075 inf 1: -15735.173699 -15735.173699 -31470.347397 inf 2: -15827.193833 -15827.193833 -31654.387667 inf 3: -15919.901145 -15919.901145 -31839.802290 inf 4: -15989.430778 -15989.430778 -31978.861ok Test 3D SyN with CC metric ... ok Test 3D SyN with EM metric, Gauss-Newton optimizer ... 557 inf Static-Reference Residual error: 0.002058 (0.000017) Moving-Reference Residual error :0.002026 (0.000016) Final residual error: 0.002855 (0.000047) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Optimizing level 1 0: -23248.088746 -23248.088746 -46496.177491 inf 1: -24228.695032 -24228.695032 -48457.390065 inf 2: -24748.418933 -24748.418933 -49496.837867 inf 3: -25207.177592 -25207.177592 -50414.355185 inf 4: -25734.845832 -25734.845832 -51469.691664 inf 5: -26085.479821 -26085.479821 -52170.959642 inf 6: -26361.580823 -26361.580823 -52723.161646 inf 7: -26650.961928 -26650.961928 -53301.923856 inf 8: -26911.378123 -26911.378123 -53822.756245 inf 9: -27130.124846 -27130.124846 -54260.249692 inf 10: -27337.461196 -27337.461196 -54674.922392 inf 11: -27531.970077 -27531.970077 -55063.940155 inf 12: -27705.774955 -27705.774955 -55411.549911 0.00107512425394 13: -27832.013021 -27832.013021 -55664.026043 0.000914918337193 14: -27944.459280 -27944.459280 -55888.918561 0.000800532590655 15: -28027.188364 -28027.188364 -56054.376727 0.000698199647744 16: -28066.925692 -28066.925692 -56133.851383 0.000604098425174 17: -28099.282778 -28099.282778 -56198.565555 0.000521864903135 18: -28124.059153 -28124.059153 -56248.118306 0.000442750399418 19: -28146.101818 -28146.101818 -56292.203637 0.000365521686966 Optimizing level 0 0: -147115.029256 -147115.029256 -294230.058513 inf 1: -150225.179820 -150225.179820 -300450.359640 inf 2: -152569.729703 -152569.729703 -305139.459407 inf 3: -154054.009010 -154054.009010 -308108.018021 inf 4: -155305.656608 -155305.656608 -310611.313215 inf Static-Reference Residual error: 0.002798 (0.000057) Moving-Reference Residual error :0.003039 (0.000066) Final residual error: 0.005512 (0.000291) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., ok Test 2D SyN with EM metric, Gauss-Newton optimizer ... 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 346.480775 342.803728 689.284503 inf 1: 291.387631 292.951456 584.339087 inf 2: 251.682946 253.268586 504.951533 inf 3: 220.268384 218.766443 439.034827 inf 4: 186.456671 188.759209 375.215880 inf 5: 156.027282 156.098045 312.125327 inf 6: 128.952212 129.557679 258.509891 inf 7: 107.858501 109.417324 217.275824 inf 8: 93.634437 94.427088 188.061525 inf 9: 75.627392 75.956370 151.583762 inf 10: 60.706910 60.177489 120.884399 inf 11: 48.479486 47.554989 96.034475 inf 12: 35.560316 35.310608 70.870924 0.0124119320723 13: 24.627609 24.446306 49.073915 0.0129214570176 14: 16.412883 16.188877 32.601760 0.0136368089555 15: 9.880703 9.790958 19.671661 0.0144852276994 16: 5.105016 5.039957 10.144973 0.0154544812457 17: 2.244601 2.236898 4.481499 0.0165714617493 18: 1.484420 1.477786 2.962206 0.0178140378799 19: 0.993317 0.977292 1.970609 0.0189921676781 Optimizing level 0 0: 69.599276 46.710776 116.310053 inf 1: 55.181984 41.916042 97.098026 inf 2: 40.250024 33.453015 73.703039 inf 3: 31.465956 27.342730 58.808687 inf 4: 29.860821 24.932888 54.793709 inf Static-Reference Residual error: 0.004732 (0.000100) Moving-Reference Residual error :0.004946 (0.000105) Final residual error: 0.004600 (0.000185) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.260563 25.935777 51.196341 inf 1: 24.291909 24.782446 49.074355 inf 2: 21.905502 19.816675 41.722177 inf 3: 16.319560 16.287693 32.607252 inf 4: 15.510241 15.323560 30.833801 inf 5: 12.833023 10.664176 23.497199 inf 6: 6.911960 6.402279 13.314239 inf 7: 4.227106 4.539786 8.766892 inf 8: 2.875194 2.799543 5.674738 inf 9: 1.028632 1.103462 2.132094 inf 10: 0.385113 0.588294 0.973407 inf 11: 0.378790 0.469463 0.848253 inf 12: 0.315466 0.250128 0.565594 0.0187608373542 13: 0.309691 0.238778 0.548469 0.0200898020321 14: 0.190588 0.179123 0.369711 0.0210177414203 15: 0.217590 0.200559 0.418149 0.0217283490109 16: 0.184794 0.126621 0.311415 0.0220641257751 17: 0.281238 0.193238 0.474476 0.0218811033207 18: 0.125829 0.138359 0.264188 0.0206767286897 19: 0.170557 0.188336 0.358893 0.0192731241518 20: 0.123527 0.126567 0.250094 0.0161426605476 21: 0.207990 0.181007 0.388997 0.0114627883047 22: 0.154809 0.132260 0.287069 0.00705910865924 23: 0.196801 0.182502 0.379303 0.00566897712645 24: 0.211032 0.187251 0.398284 0.00300179232941 25: 0.136730 0.143651 0.280382 0.00115968665248 26: 0.170191 0.167518 0.337709 0.000917108054183 27: 0.198692 0.144906 0.343598 0.000697020160087 28: 0.142870 0.141998 0.284868 0.000113041903499 29: 0.185604 0.173708 0.359312 0.00092ok Test 3D SyN with EM metric, demons-like optimizer ... ok Test 2D SyN with EM metric, demons-like optimizer ... 4596260835 30: 0.142361 0.118889 0.261250 -0.000370540977552 Optimizing level 1 0: 1.594140 2.008261 3.602400 inf 1: 0.690500 0.838075 1.528575 inf 2: 0.400110 0.497698 0.897808 inf 3: 0.235701 0.300912 0.536613 inf 4: 0.200830 0.266492 0.467322 inf 5: 0.226676 0.275083 0.501758 inf 6: 0.228042 0.283812 0.511853 inf 7: 0.211152 0.253775 0.464927 inf 8: 0.261904 0.306827 0.568731 inf 9: 0.216284 0.294498 0.510783 inf 10: 0.285706 0.321656 0.607361 inf 11: 0.230042 0.316215 0.546257 inf 12: 0.268310 0.336497 0.604807 0.00977853173943 13: 0.270239 0.365102 0.635341 0.00327878491516 14: 0.280673 0.381619 0.662292 -0.000506215456385 Optimizing level 0 0: 5.169311 6.433118 11.602429 inf 1: 2.713145 4.717974 7.431119 inf 2: 1.719724 3.805298 5.525022 inf 3: 1.331677 3.286523 4.618200 inf 4: 1.089723 2.838541 3.928265 inf 5: 0.840174 2.871973 3.712147 inf 6: 0.826612 2.461437 3.288049 inf 7: 0.790933 2.478236 3.269169 inf 8: 0.795014 2.367974 3.162988 inf 9: 0.797044 2.780595 3.577639 inf Static-Reference Residual error: 0.004676 (0.000118) Moving-Reference Residual error :0.006051 (0.000180) Final residual error: 0.007258 (0.000473) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 342.803728 346.480775 689.284503 inf 1: 294.194338 290.386190 584.580529 inf 2: 251.942413 258.204845 510.147257 inf 3: 213.718215 213.491909 427.210124 inf 4: 178.992201 177.054272 356.046473 inf 5: 145.964497 143.912717 289.877214 inf 6: 117.367110 114.623399 231.990509 inf 7: 93.562758 92.126531 185.689289 inf 8: 71.098561 71.701194 142.799754 inf 9: 54.763455 55.334446 110.097901 inf 10: 41.618993 42.350982 83.969975 inf 11: 31.472504 31.933977 63.406481 inf 12: 23.211535 23.211010 46.422545 0.0143712907499 13: 17.189237 17.090964 34.280201 0.0150217889729 14: 13.234089 12.933879 26.167968 0.0156620312277 15: 10.059870 9.982884 20.042754 0.0161697953839 16: 7.585486 7.567511 15.152996 0.016588746909 17: 5.873491 5.853947 11.727438 0.0169090649589 18: 5.121620 5.124809 10.246429 0.0171271144192 19: 4.643718 4.626829 9.270547 0.0171402427244 Optimizing level 0 0: 192.516476 232.681882 425.198358 inf 1: 164.514289 200.984504 365.498794 inf 2: 153.791747 183.373721 337.165468 inf 3: 142.211387 167.851328 310.062715 inf 4: 133.913682 153.968007 287.881688 inf Static-Reference Residual error: 0.006295 (0.000138) Moving-Reference Residual error :0.006999 (0.000178) Final residual error: 0.005522 (0.000419) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', arrayok dipy.align.tests.test_metrics.test_exceptions ... ok dipy.align.tests.test_metrics.test_EMMetric_image_dynamics ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_parzenhist.test_cubic_spline ... ok dipy.align.tests.test_parzenhist.test_cubic_spline_derivative ... ok dipy.align.tests.test_parzenhist.test_parzen_joint_histogram ... ok dipy.align.tests.test_parzenhist.test_parzen_densities ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_dense ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_sparse ... ok dipy.align.tests.test_parzenhist.test_sample_domain_regular ... ok dipy.align.tests.test_parzenhist.test_exceptions ... ok dipy.align.tests.test_reslice.test_resample ... /usr/lib/python2.7/dist-packages/scipy/ndimage/interpolation.py:430: UserWarning: The behaviour of affine_transform with a one-dimensional array supplied for the matrix parameter has changed in scipy 0.18.0. "The behaviour of affine_transform with a one-dimensional " ([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.935777 25.260563 51.196340 inf 1: 27.037444 20.694161 47.731605 inf 2: 13.784599 17.400170 31.184769 inf 3: 9.943231 10.510352 20.453583 inf 4: 6.479765 6.347510 12.827275 inf 5: 3.138036 3.538554 6.676591 inf 6: 1.532194 1.621278 3.153472 inf 7: 0.446067 0.399313 0.845379 inf 8: 0.583351 0.477469 1.060820 inf 9: 0.266034 0.259799 0.525833 inf 10: 0.371923 0.350807 0.722730 inf 11: 0.283530 0.247474 0.531004 inf 12: 0.390005 0.335071 0.725076 0.0221056663649 13: 0.257404 0.309310 0.566714 0.022274083446 14: 0.361977 0.354587 0.716564 0.0218649984619 15: 0.283879 0.263841 0.547720 0.0205758039221 16: 0.338480 0.338796 0.677277 0.0182851818147 17: 0.243377 0.273284 0.516661 0.0134650607416 18: 0.366437 0.300859 0.667297 0.00775868220169 19: 0.240609 0.259311 0.499920 0.00206424498949 20: 0.313076 0.325632 0.638708 0.00223167399382 21: 0.252694 0.254945 0.507639 0.000519713318833 22: 0.298032 0.316239 0.614270 0.00145530740807 23: 0.235446 0.276002 0.511447 0.000782980643687 24: 0.356744 0.346786 0.703530 0.00150563643911 25: 0.259406 0.256541 0.515947 4.22435327605e-06 Optimizing level 1 0: 2.950720 2.337735 5.288455 inf 1: 1.651256 1.349698 3.000953 inf 2: 0.978116 0.760163 1.738278 inf 3: 0.790510 0.634077 1.424587 inf 4: 0.672294 0.519591 1.191884 inf 5: 0.657691 0.527410 1.185102 inf 6: 0.622684 0.497433 1.120117 inf 7: 0.619534 0.443340 1.062874 inf 8: 0.618931 0.438729 1.057660 inf 9: 0.566903 0.447358 1.014261 inf 10: 0.567649 0.427983 0.995632 inf 11: 0.634471 0.484169 1.118640 inf 12: 0.505029 0.391306 0.896335 0.00903869034916 13: 0.730179 0.552234 1.282413 0.00558657346444 14: 0.546126 0.424956 0.971081 0.00192242618804 15: 0.591130 0.468553 1.059683 0.0012156911767 16: 0.548781 0.395463 0.944244 0.000528201385145 17: 0.694040 0.516499 1.210539 0.000722158717477 18: 0.606099 0.402641 1.008740 -0.000298695618693 Optimizing level 0 0: 8.327193 4.504177 12.831370 inf 1: 6.550277 2.961995 9.512272 inf 2: 4.909879 2.340814 7.250693 inf 3: 4.418773 2.064781 6.483554 inf 4: 4.096945 1.712055 5.809000 inf 5: 3.967829 1.758361 5.726191 inf 6: 4.019961 1.706295 5.726256 inf 7: 3.910212 1.580735 5.490948 inf 8: 3.504665 1.555306 5.059971 inf 9: 3.684945 1.485857 5.170802 inf Static-Reference Residual error: 0.003718 (0.000049) Moving-Reference Residual error :0.003919 (0.000054) Final residual error: 0.004489 (0.000091) ok dipy.align.tests.test_scalespace.test_scale_space ... ok dipy.align.tests.test_scalespace.test_scale_space_exceptions ... ok dipy.align.tests.test_streamlinear.test_rigid_parallel_lines ... ok dipy.align.tests.test_streamlinear.test_rigid_real_bundles ... ok dipy.align.tests.test_streamlinear.test_rigid_partial_real_bundles ... ok dipy.align.tests.test_streamlinear.test_stream_rigid ... ok dipy.align.tests.test_streamlinear.test_min_vs_min_fast_precision ... ok dipy.align.tests.test_streamlinear.test_same_number_of_points ... ok dipy.align.tests.test_streamlinear.test_efficient_bmd ... ok dipy.align.tests.test_streamlinear.test_openmp_locks ... ok dipy.align.tests.test_streamlinear.test_from_to_rigid ... ok dipy.align.tests.test_streamlinear.test_matrix44 ... ok dipy.align.tests.test_streamlinear.test_abstract_metric_class ... ok dipy.align.tests.test_streamlinear.test_evolution_of_previous_iterations ... ok dipy.align.tests.test_streamlinear.test_similarity_real_bundles ... ok dipy.align.tests.test_streamlinear.test_affine_real_bundles ... (2, ) (3, ) (2, ) (3, ) [ 88.12210846 109.13088989 81.60664368] 7.98038710888 23 196 [[ 9.99575842e-01 -2.24410391e-02 -1.85616921e-02 -9.17371007e-01] [ 2.91170565e-02 7.82729855e-01 6.21680119e-01 4.98765055e-01] [ 5.77642725e-04 -6.21956890e-01 7.83051271e-01 -1.17084992e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] fun: 7.980386979001027 hess_inv: <6x6 LbfgsInvHessProduct with dtype=float64> jac: array([ 3.46389584e-06, 2.57927013e-04, -3.99680289e-06, 5.50670620e-06, 2.68229883e-05, 3.99680289e-06]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 217 nit: 28 status: 0 success: True x: array([ -0.91734942, 0.49887754, -1.17085439, 2.01197266, -40.01557294, 0.37542769]) 0.0001 0.0001 fun: 6.9101829107778007e-07 hess_inv: <12x12 LbfgsInvHessProduct with dtype=float64> jac: array([ 5.95419107e-04, -6.94252287e-04, -4.63060993e-04, -2.56136244e-05, -3.74194651e-05, 3.21283518e-05, 1.82654141e-04, 8.58938004e-04, 8.06722490e-04, 8.52137335e-05, 3.20149464e-05, -5.99380776e-04]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 3211 nit: 230 status: 0 success: True x: array([ 1.96133610e-04, -5.06092884e-04, -2.37724721e-04, 2.43706684e+00, -1.21386956e+01, -1.14313506e+01, 8.13670594e-01, 9.05724880e-01, 1.02811501e+00, -3.91004927e-02, -8.64343316e-02, -1.70423756e-02]) direc: array([[ 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -1.21757520e-07, -1.01953501e-07, 1.50290315e-07, 1.33888281e-06, -3.04178503e-06, -5.35788295e-06, -8.13658010e-08, -3.79387389e-08, 4.34558534e-09, -1.57307641e-07, 2.28340354e-08, 4.78536401e-09], [ 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 1.00061222e-08, -2.45030195e-08, -6.93117441e-09, 2.44992569e-07, -1.36901450e-07, 5.61690769e-07, -1.94528198e-09, 5.61359815e-09, 2.99125001e-09, 8.92862935e-09, 1.48453384e-09, 5.60569720e-09], [ 3.35976234e-10, -8.52913380e-10, -3.85525455e-10, -4.85117040e-09, 1.89829457e-08, -3.50869203e-09, -2.42847035e-10, -6.88681294e-11, -1.53949509e-12, -1.53760558e-10, -5.41285727e-10, -5.79905378e-11], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00], [ -1.37713523e-10, -1.71029316e-10, 1.80548755e-10, -4.52021608e-09, 8.96273662e-09, 8.56403032e-09, -4.63563650e-11, 7.72333962e-11, -7.29485775e-11, 1.43159758e-10, -1.13790110e-10, -5.67651951e-11], [ -1.42751326e-05, 1.56512211e-05, -2.68985696e-05, 3.38376770e-04, 1.39264510e-04, -3.20598827e-04, 8.92461676e-07, -1.14383783e-06, 1.76653409e-06, -4.34123209e-06, -1.69983618e-06, 5.80505393e-06], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -3.25631921e-06, -1.05924916e-05, -2.58135594e-06, 2.96635944e-05, -6.753930ok dipy.align.tests.test_streamlinear.test_vectorize_streamlines ... ok dipy.align.tests.test_streamlinear.test_x0_input ... ok dipy.align.tests.test_streamlinear.test_compose_decompose_matrix44 ... ok dipy.align.tests.test_streamlinear.test_cascade_of_optimizations_and_threading ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_3d ... ok dipy.align.tests.test_sumsqdiff.test_solve_2d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_solve_3d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_transforms.test_number_of_parameters ... ok dipy.align.tests.test_transforms.test_param_to_matrix_2d ... ok dipy.align.tests.test_transforms.test_param_to_matrix_3d ... ok dipy.align.tests.test_transforms.test_identity_parameters ... ok dipy.align.tests.test_transforms.test_jacobian_functions ... ok dipy.align.tests.test_transforms.test_invalid_transform ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_2d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_3d ... ok dipy.align.tests.test_vector_fields.test_circle ... ok dipy.align.tests.test_vector_fields.test_sphere ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_2d ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests 2D affine transform functions against scipy implementation ... ok Tests 3D affine transform functions against scipy implementation ... ok Creates two random displacement field that exactly map pixels from an input ... ok Creates two random displacement field that exactly map pixels from an input ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_3d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_2d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_random_vector_fields ... ok dipy.align.tests.test_vector_fields.test_gradient_2d ... ok dipy.align.tests.test_vector_fields.test_gradient_3d ... ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:128: RuntimeWarning: invalid value encountered in double_scalars theta = np.arccos(z / r) dipy.core.tests.test_geometry.test_sphere_cart((array(0.0), array(0.0), array(0.0)), (0.0, 0.0, 0.0)) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.076583261948278414, 0.0765832619482784) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ]), array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ])) ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_geometry.test_vec2vec_rotmat ... ok dipy.core.tests.test_geometry.test_compose_transformations ... ok dipy.core.tests.test_geometry.test_compose_decompose_matrix ... ok dipy.core.tests.test_geometry.test_perpendicular_directions ... ok dipy.core.tests.test_geometry.test_dist_to_corner ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_gradients.test_deltas ... ok dipy.core.tests.test_gradients.test_qvalues ... ok dipy.core.tests.test_gradients.test_reorient_bvecs ... ok Test that the presence of nan's in b-vectors doesn't raise warnings. ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_optimize.test_optimize_new_scipy ... ok dipy.core.tests.test_optimize.test_optimize_old_scipy ... SKIP: Skipping test: test_optimize_old_scipy: Test skipped due to test condition dipy.core.tests.test_optimize.test_sklearn_linear_solver ... ok dipy.core.tests.test_optimize.test_nonnegativeleastsquares ... ok dipy.core.tests.test_optimize.test_spdot ... ok dipy.core.tests.test_optimize.test_sparse_nnls ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_sphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ok dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.denoise.tests.test_denoise.test_denoise ... ok Test if the kernel values are correct by comparison against the values ... ok Test if a convolution with a delta spike is equal to the kernel ... ok Test the kernel for inputs of type Sphere, type int and for input None ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_padding ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_static ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_boundary ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_dtype ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4d_3dsigma_and_threads ... ok dipy.denoise.tests.test_noise_estimate.test_inv_nchi ... ok dipy.denoise.tests.test_noise_estimate.test_piesno ... ok dipy.denoise.tests.test_noise_estimate.test_estimate_sigma ... ok dipy.direction.tests.test_peaks.test_peak_directions_nl ... ok dipy.direction.tests.test_peaks.test_OdfFit ... ok dipy.direction.tests.test_peaks.test_peak_directions ... ok dipy.direction.tests.test_peaks.test_peak_directions_thorough ... ok dipy.direction.tests.test_peaks.test_difference_with_minmax ... ok dipy.direction.tests.test_peaks.test_degenerative_cases ... ok dipy.direction.tests.test_peaks.test_peaksFromModel ... ok dipy.direction.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.direction.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.direction.tests.test_prob_direction_getter.test_ProbabilisticDirectionGetter ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... SKIP: Skipping test: test_dpy: Pytables does not appear to be installed dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.reconst.tests.test_cache.test_basic_cache ... ok Test the calculation of the coefficient of determination ... ok Test k-fold cross-validation ... ok dipy.reconst.tests.test_cross_validation.test_csd_xval ... ok Test that if you try to do this with a model that doesn't have a `predict` ... ok Test the recursive response calibration method. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py:188: UserWarning: Vertices are not on the unit sphere. warnings.warn("Vertices are not on the unit sphere.") ok dipy.reconst.tests.test_csdeconv.test_response_from_mask ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:827: UserWarning: No voxel with a FA higher than 1 were found. Try a larger roi or a lower threshold. warnings.warn(msg, UserWarning) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2889: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:80: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:73: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:314: RuntimeWarning: invalid value encountered in true_divide odf_sh /= Z ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok Test prediction API ... ok Check that we can predict reasonably from multi-voxel fits: ... ok Check that mirroring regularization sphere does not change the result of ... ok We check that the default value of lambda is the expected value with ... ok Check the quality of csdfit with high SH order. ... ok dipy.reconst.tests.test_dki.test_positive_evals ... ok dipy.reconst.tests.test_dki.test_split_dki_param ... ok DKI fits are tested on noise free crossing fiber simulates ... ok Apparent kurtosis coeficients are tested for a spherical kurtosis ... ok dipy.reconst.tests.test_dki.test_dki_predict ... ok dipy.reconst.tests.test_dki.test_carlson_rf ... ok dipy.reconst.tests.test_dki.test_carlson_rd ... ok dipy.reconst.tests.test_dki.test_Wrotate_single_fiber ... ok dipy.reconst.tests.test_dki.test_Wrotate_crossing_fibers ... ok dipy.reconst.tests.test_dki.test_Wcons ... ok dipy.reconst.tests.test_dki.test_spherical_dki_statistics ... ok dipy.reconst.tests.test_dki.test_compare_MK_method ... ok dipy.reconst.tests.test_dki.test_single_voxel_DKI_stats ... ok dipy.reconst.tests.test_dki.test_compare_RK_methods ... ok dipy.reconst.tests.test_dki.test_MK_singularities ... ok dipy.reconst.tests.test_dki.test_dki_errors ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi.test_multib0_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok dipy.reconst.tests.test_dti.test_roll_evals ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_tensor_model ... ok dipy.reconst.tests.test_dti.test_indexing_on_tensor_fit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_ga_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_all_zeros ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion ... ok Test model prediction API ... ok dipy.reconst.tests.test_dti.test_eig_from_lo_tri ... ok dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics ... ok dipy.reconst.tests.test_mapmri_odf.test_mapmri_odf ... ok dipy.reconst.tests.test_mapmri_odf.test_multivox_mapmri ... ok dipy.reconst.tests.test_multi_voxel.test_squash ... ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peakdf.test_PeaksAndMetricsDirectionGetter ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_sfm.test_design_matrix ... ok dipy.reconst.tests.test_sfm.test_sfm ... SKIP: Skipping test: test_sfm: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_predict ... SKIP: Skipping test: test_predict: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_sfm_background ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:414: RuntimeWarning: divide by zero encountered in divide flat_S0[..., None]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:61: RuntimeWarning: divide by zero encountered in divide to_fit[nzb0_idx] = data_no_b0[nzb0_idx] / s0[nzb0_idx[0]] ok dipy.reconst.tests.test_sfm.test_sfm_stick ... ok dipy.reconst.tests.test_sfm.test_sfm_sklearnlinearsolver ... ok dipy.reconst.tests.test_sfm.test_exponential_iso ... SKIP: Skipping test: test_exponential_iso: Test skipped due to test condition dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_order_from_ncoeff ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shm.test_faster_sph_harm ... ok dipy.reconst.tests.test_shm.test_anisotropic_power ... ok Based on the table in: ... ok dipy.reconst.tests.test_shore_fitting.test_shore_positive_constrain ... SKIP: Skipping test: test_shore_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_shore_fitting.test_shore_fitting_no_constrain_e0 ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:128: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore_fitting.test_shore_fitting_constrain_e0 ... SKIP: Skipping test: test_shore_fitting_constrain_e0: Test skipped due to test condition dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_clustering.test_cluster_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_assign ... ok dipy.segment.tests.test_clustering.test_cluster_iter ... ok dipy.segment.tests.test_clustering.test_cluster_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_assign ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_clear ... ok dipy.segment.tests.test_clustering.test_cluster_map_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_map_size ... ok dipy.segment.tests.test_clustering.test_cluster_map_clusters_sizes ... ok dipy.segment.tests.test_clustering.test_cluster_map_get_small_and_large_clusters ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_object ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_subclassing_clustering ... ok dipy.segment.tests.test_feature.test_identity_feature ... ok dipy.segment.tests.test_feature.test_feature_resample ... ok dipy.segment.tests.test_feature.test_feature_center_of_mass ... ok dipy.segment.tests.test_feature.test_feature_midpoint ... ok dipy.segment.tests.test_feature.test_feature_arclength ... ok dipy.segment.tests.test_feature.test_feature_vector_of_endpoints ... ok dipy.segment.tests.test_feature.test_feature_extract ... ok dipy.segment.tests.test_feature.test_subclassing_feature ... ok dipy.segment.tests.test_feature.test_using_python_feature_with_cython_metric ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_metric.test_metric_minimum_average_direct_flip ... ok dipy.segment.tests.test_metric.test_metric_cosine ... ok dipy.segment.tests.test_metric.test_subclassing_metric ... ok dipy.segment.tests.test_metric.test_distance_matrix ... ok dipy.segment.tests.test_qb.test_qbundles ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_empty_data ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_wrong_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_shape_uncompatibility ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_2D ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_streamlines ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_not_order_invariant_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_memory_leaks ... ok dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_check_directions ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.sims.tests.test_voxel.test_all_tensor_evecs ... ok Testing symmetry of the elements of the KT ... ok Testing DKI simulations when aligning the same fiber to different axis. ... ok Testing DKI simulations of a crossing fiber ... ok This tests that the Local Tracker behaves as expected for the ... ok dipy.tracking.local.tests.test_local_tracking.test_trilinear_interpolate ... ok This tests that the Probabalistic Direction Getter plays nice ... ok This tests that the Maximum Deterministic Direction Getter plays nice ... ok This tests that the binary tissue classifier returns expected ... ok This tests that the thresholdy tissue classifier returns expected ... ok This tests that the act tissue classifier returns expected ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_life.test_streamline_gradients ... ok dipy.tracking.tests.test_life.test_streamline_tensors ... ok dipy.tracking.tests.test_life.test_streamline_signal ... ok dipy.tracking.tests.test_life.test_voxel2streamline ... ok dipy.tracking.tests.test_life.test_FiberModel_init ... ok dipy.tracking.tests.test_life.test_FiberFit ... ok dipy.tracking.tests.test_life.test_fit_data ... ok dipy.tracking.tests.test_localtrack.test_ThresholdTissueClassifier ... ok dipy.tracking.tests.test_markov.test_BoundaryStepper ... ok dipy.tracking.tests.test_markov.test_FixedSizeStepper ... ok dipy.tracking.tests.test_markov.test_markov_streamline ... ok dipy.tracking.tests.test_markov.test_MarkovIntegrator ... ok dipy.tracking.tests.test_markov.test_closest_peak ... ok dipy.tracking.tests.test_markov.test_ClosestDirectionTracker ... ok dipy.tracking.tests.test_markov.test_ProbabilisticOdfWeightedTracker ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_propagation.test_offset ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok This test checks that the tracking will exclude seeds in both directions. ... ok dipy.tracking.tests.test_propagation.test_eudx_both_directions_errors ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_length ... ok dipy.tracking.tests.test_streamline.test_length_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_unlist_relist_streamlines ... ok dipy.tracking.tests.test_streamline.test_center_and_transform ... ok dipy.tracking.tests.test_streamline.test_select_random_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_select_by_rois ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/streamline.py:244: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: warn(w_s) ok dipy.tracking.tests.test_streamline.test_orient_by_rois ... ok dipy.tracking.tests.test_streamline.test_values_from_volume ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... ok dipy.tracking.tests.test_utils.test_to_voxel_coordinates_precision ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_near_roi ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/utils.py:698: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: 0.866025403784 warn(w_s) ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... ok dipy.tracking.tests.test_utils.test_rmi ... ok dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... ok dipy.tracking.tests.test_utils.test_random_seeds_from_mask ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix_shape ... ok Testing the function unique_coords ... ok dipy.tracking.tests.test_utils.test_reduce_rois ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.utils.tests.test_arrfuncs.test_pinv ... ok dipy.utils.tests.test_arrfuncs.test_eigh ... ok dipy.utils.tests.test_tripwire.test_is_tripwire ... ok dipy.utils.tests.test_tripwire.test_tripwire ... ok dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_colormap ... ok dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ... FAIL dipy.viz.tests.test_fvtk_actors.test_bundle_maps ... SKIP: Skipping test: test_bundle_maps: Test skipped due to test condition dipy.viz.tests.test_fvtk_actors.test_slicer ... SKIP: Skipping test: test_slicer: Test skipped due to test condition dipy.viz.tests.test_fvtk_actors.test_streamtube_and_line_actors ... SKIP: Skipping test: test_streamtube_and_line_actors: Test skipped due to test condition dipy.viz.tests.test_fvtk_utils.test_trilinear_interp ... ok dipy.viz.tests.test_fvtk_widgets.test_button_and_slider_widgets ... SKIP: Skipping test: test_button_and_slider_widgets: Test skipped due to test condition dipy.viz.tests.test_fvtk_widgets.test_text_widget ... SKIP: Skipping test: test_text_widget: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_active_camera ... SKIP: Skipping test: test_active_camera: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_order_transparent ... SKIP: Skipping test: test_order_transparent: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_parallel_projection ... SKIP: Skipping test: test_parallel_projection: Test skipped due to test condition dipy.viz.tests.test_fvtk_window.test_renderer ... SKIP: Skipping test: test_renderer: Test skipped due to test condition dipy.viz.tests.test_regtools.test_plot_2d_diffeomorphic_map ... ok dipy.workflows.tests.test_docstring_parser.test_signature ... ok dipy.workflows.tests.test_docstring_parser.test_summary ... ok dipy.workflows.tests.test_docstring_parser.test_extended_summary ... ok dipy.workflows.tests.test_docstring_parser.test_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_other_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_returns ... ok dipy.workflows.tests.test_docstring_parser.test_notes ... ok dipy.workflows.tests.test_docstring_parser.test_references ... ok dipy.workflows.tests.test_docstring_parser.test_examples ... ok dipy.workflows.tests.test_docstring_parser.test_index ... ok dipy.workflows.tests.test_docstring_parser.test_str ... ok dipy.workflows.tests.test_docstring_parser.test_parameters_without_extended_description ... ok dipy.workflows.tests.test_docstring_parser.test_raises ... ok dipy.workflows.tests.test_docstring_parser.test_warns ... ok dipy.workflows.tests.test_docstring_parser.test_see_also ... ok dipy.workflows.tests.test_docstring_parser.test_empty_first_line ... ok dipy.workflows.tests.test_docstring_parser.test_duplicate_signature ... ok dipy.workflows.tests.test_iap.test_iap ... ok dipy.workflows.tests.test_iap.test_nargs ... ok dipy.workflows.tests.test_segment.test_median_otsu_flow ... ok dipy.workflows.tests.test_utils.test_choose_create_out_dir ... ok dipy.testing.tests.test_decorators.test_skipper ... ok dipy.testing.tests.test_memory.test_get_type_refcount ... ok dipy.tests.test_scripts.test_dipy_peak_extraction ... ok dipy.tests.test_scripts.test_dipy_fit_tensor ... ok dipy.tests.test_scripts.test_dipy_sh_estimate ... ok dipy.tests.test_scripts.test_dipy_fit_tensor_again ... ok dipy.tests.test_scripts.test_qb_commandline ... ok dipy.tests.test_scripts.test_qb_commandline_output_path_handling ... ok ====================================================================== FAIL: dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func return f(*args, **kwargs) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests/test_fvtk.py", line 118, in test_colormaps_matplotlib npt.assert_array_almost_equal(rgba1, rgba2, 1) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 979, in assert_array_almost_equal precision=decimal) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Arrays are not almost equal to 1 decimals (mismatch 16.45%) x: array([[ 0.7, 0.7, 0.8, 1. ], [ 0.9, 0. , 0.5, 1. ], [ 0.7, 0.4, 0.1, 1. ],... y: array([[ 0.9, 0.7, 0.6, 1. ], [ 0.8, 0.1, 0.5, 1. ], [ 0.8, 0.2, 0.3, 1. ],... ---------------------------------------------------------------------- Ran 533 tests in 1605.599s FAILED (SKIP=18, failures=1) 51e-05, -9.45736468e-05, -4.63994476e-07, 1.08138978e-06, 4.86095973e-07, -1.18622079e-06, 1.90228822e-06, 7.67955010e-07], [ -6.18076160e-07, 3.53847754e-06, -1.15850521e-06, 1.45735171e-05, -3.49339795e-05, 5.67526164e-05, -1.67677715e-06, 6.79532632e-07, 2.01424657e-07, 2.60606755e-07, 6.68257674e-08, 6.56803884e-07], [ -3.23236800e-11, -6.32797017e-11, -2.96427715e-11, -9.93734549e-10, 2.32426672e-09, 3.71086277e-10, -6.00026365e-12, 1.22360509e-11, -5.52555437e-12, -1.00295077e-11, -6.24192582e-11, -4.25660013e-12]]) fun: 5.8620853451181874e-14 message: 'Optimization terminated successfully.' nfev: 6401 nit: 34 status: 0 success: True x: array([ 1.24908996e-07, -2.82567030e-07, 1.51855214e-07, -2.24344218e-03, 6.49550222e-03, -1.53686117e-02, 1.00000763e+00, 9.99884769e-01, 9.99968195e-01, -2.58737826e-04, -1.07099850e-04, -1.10823452e-04]) first rigid then similarity then affine B-values shape (7,) min 0.000000 max 1500.000000 B-vectors shape (7, 3) min 0.000000 max 1.000000 Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} fun: 7.598922857205412e-16 hess_inv: <3x3 LbfgsInvHessProduct with dtype=float64> jac: array([ -2.18306411e-08, -2.18306411e-08, -2.18306411e-08]) message: 'CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL' nfev: 12 nit: 2 status: 0 success: True x: array([ -1.59153206e-08, -1.59153206e-08, -1.59153206e-08]) The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 (99.991053185221148, 92.659519705931899, 107.78580469998036) (100.0107238740066, 99.441778791302781, 100.58552484499536) 301.76267195 99.5007627403 cpu count 4 1 71.7679109573 All 19.0377969742 2 19.0377969742 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) 3 0.000914096832275 13 0.0153610706329 13 1.24920296669 161 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195713]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Optimizing level 3 Optimizing level 2 Optimizing level 1 Optimizing level 0 Applying median_otsu segmentation on /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files/small_25.nii.gz Mask saved as /tmp/tmpoxc_lc/small_25_mask.nii.gz Masked volume saved as /tmp/tmpoxc_lc/small_25_bet.nii.gz debian/rules:75: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/<>' debian/rules:30: recipe for target 'binary-arch' failed make: *** [binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 20170709-0907 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 418616 Build-Time: 2661 Distribution: artful Fail-Stage: build Host Architecture: arm64 Install-Time: 70 Job: dipy_0.11.0-1.dsc Machine Architecture: arm64 Package: dipy Package-Time: 2737 Source-Version: 0.11.0-1 Space: 418616 Status: attempted Version: 0.11.0-1 -------------------------------------------------------------------------------- Finished at 20170709-0907 Build needed 00:45:37, 418616k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12870118'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12870118/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12870118'] Unmounting chroot for build PACKAGEBUILD-12870118... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12870118'] Removing build PACKAGEBUILD-12870118