https://launchpad.net/ubuntu/+archive/test-rebuild-20180408/+build/14567490 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-017 4.4.0-121-generic #145-Ubuntu SMP Fri Apr 13 13:46:10 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Apr 14:38:30 ntpdate[1753]: adjust time server 10.211.37.1 offset 0.003187 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-14567490 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 Starting target for build PACKAGEBUILD-14567490 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-14567490 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 Updating target for build PACKAGEBUILD-14567490 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x Packages [943 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main Translation-en [516 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/universe s390x Packages [8175 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/multiverse s390x Packages [124 kB] Fetched 15.1 MB in 3s (4878 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14567490 s390x bionic -c chroot:build-PACKAGEBUILD-14567490 --arch=s390x --dist=bionic --nolog gmap_2017-11-15-1.dsc Initiating build PACKAGEBUILD-14567490 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-121-generic #145-Ubuntu SMP Fri Apr 13 13:46:10 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-017.buildd +==============================================================================+ | gmap 2017-11-15-1 (s390x) 27 Apr 2018 14:38 | +==============================================================================+ Package: gmap Version: 2017-11-15-1 Source Version: 2017-11-15-1 Distribution: bionic Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/gmap-yKac77/gmap-2017-11-15' with '<>' I: NOTICE: Log filtering will replace 'build/gmap-yKac77' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14567490/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gmap_2017-11-15-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-kH2QVQ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-kH2QVQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kH2QVQ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-kH2QVQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kH2QVQ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-kH2QVQ/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-kH2QVQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-exec, help2man, libbz2-dev, zlib1g-dev Filtered Build-Depends: debhelper (>= 10), dh-exec, help2man, libbz2-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-gmap-dummy' in '/<>/resolver-A_hslR/apt_archive/sbuild-build-depends-gmap-dummy.deb'. Ign:1 copy:/<>/resolver-A_hslR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-A_hslR/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-A_hslR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-A_hslR/apt_archive ./ Sources [236 B] Get:5 copy:/<>/resolver-A_hslR/apt_archive ./ Packages [553 B] Fetched 2908 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gmap build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-gmap-dummy zlib1g-dev 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 16.6 MB of archives. After this operation, 64.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-A_hslR/apt_archive ./ sbuild-build-depends-gmap-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x liblocale-gettext-perl s390x 1.07-3build2 [16.2 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x libbsd0 s390x 0.8.7-1 [40.0 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x bsdmainutils s390x 11.1.2ubuntu1 [181 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic-mgc s390x 1:5.32-2 [185 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic1 s390x 1:5.32-2 [66.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x file s390x 1:5.32-2 [21.9 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libicu60 s390x 60.2-3ubuntu3 [7837 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libxml2 s390x 2.9.4+dfsg1-6.1ubuntu1 [587 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x gettext-base s390x 0.19.8.1-6 [48.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libsigsegv2 s390x 2.12-1 [14.6 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x autopoint all 0.19.8.1-6 [412 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x libtool all 2.4.6-2 [194 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x dh-autoreconf all 17 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x gettext s390x 0.19.8.1-6 [858 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x debhelper all 11.1.6ubuntu1 [902 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/universe s390x help2man s390x 1.47.6 [162 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x libbz2-dev s390x 1.0.6-8.1 [30.4 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-0ubuntu2 [173 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main s390x dh-exec s390x 0.23build1 [24.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.6 MB in 3s (6042 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_s390x.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../01-libbsd0_0.8.7-1_s390x.deb ... Unpacking libbsd0:s390x (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu1_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.3-2_s390x.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.32-2_s390x.deb ... Unpacking libmagic-mgc (1:5.32-2) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../07-libmagic1_1%3a5.32-2_s390x.deb ... Unpacking libmagic1:s390x (1:5.32-2) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.32-2_s390x.deb ... Unpacking file (1:5.32-2) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../09-libglib2.0-0_2.56.1-2ubuntu1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:s390x. Preparing to unpack .../10-libicu60_60.2-3ubuntu3_s390x.deb ... Unpacking libicu60:s390x (60.2-3ubuntu3) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-6.1ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... 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Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.47.6_s390x.deb ... Unpacking help2man (1.47.6) ... Selecting previously unselected package libbz2-dev:s390x. Preparing to unpack .../31-libbz2-dev_1.0.6-8.1_s390x.deb ... Unpacking libbz2-dev:s390x (1.0.6-8.1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../32-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package dh-exec. Preparing to unpack .../33-dh-exec_0.23build1_s390x.deb ... Unpacking dh-exec (0.23build1) ... Selecting previously unselected package sbuild-build-depends-gmap-dummy. Preparing to unpack .../34-sbuild-build-depends-gmap-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-gmap-dummy (0.invalid.0) ... Setting up libicu60:s390x (60.2-3ubuntu3) ... Setting up libbz2-dev:s390x (1.0.6-8.1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.8.7-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:s390x (1:5.32-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up gettext (0.19.8.1-6) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.1.6ubuntu1) ... Setting up dh-exec (0.23build1) ... Setting up sbuild-build-depends-gmap-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-121-generic s390x (s390x) Toolchain package versions: binutils_2.30-15ubuntu1 dpkg-dev_1.19.0.5ubuntu2 g++-7_7.3.0-16ubuntu3 gcc-7_7.3.0-16ubuntu3 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1ubuntu2 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-15ubuntu1 binutils-common_2.30-15ubuntu1 binutils-s390x-linux-gnu_2.30-15ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2 cpp-7_7.3.0-16ubuntu3 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-exec_0.23build1 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2 dpkg-dev_1.19.0.5ubuntu2 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2 g++-7_7.3.0-16ubuntu3 gcc_4:7.3.0-3ubuntu2 gcc-7_7.3.0-16ubuntu3 gcc-7-base_7.3.0-16ubuntu3 gcc-8-base_8-20180414-1ubuntu2 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-16ubuntu3 libassuan0_2.5.1-2 libatomic1_8-20180414-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-15ubuntu1 libblkid1_2.31.1-0.4ubuntu3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8-20180414-1ubuntu2 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-16ubuntu3 libgcc1_1:8-20180414-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8-20180414-1ubuntu2 libgpg-error0_1.27-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8-20180414-1ubuntu2 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libreadline7_7.0-3 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libubsan0_7.3.0-16ubuntu3 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gmap-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 21 16:09:57 2017 UTC gpgv: using RSA key 1CF792111B5228B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gmap_2017-11-15-1.dsc dpkg-source: info: extracting gmap in gmap-2017-11-15 dpkg-source: info: unpacking gmap_2017-11-15.orig.tar.xz dpkg-source: info: unpacking gmap_2017-11-15-1.debian.tar.xz dpkg-source: info: applying only-do-cpuid-on-amd64-i386.patch dpkg-source: info: applying install-data-local Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14567490 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14567490 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14567490 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gmap dpkg-buildpackage: info: source version 2017-11-15-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build gmap-2017-11-15 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:111: installing 'config/compile' configure.ac:116: installing 'config/missing' src/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-shared --with-gmapdb=/var/cache/gmap \ --bindir=/usr/lib/gmap ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-shared --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap checking package version... 2017-11-15 loading default site script ./config.site checking CFLAGS... -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking target system type... s390x-ibm-linux-gnu checking for non-Intel CPU... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... none checking whether to enable maintainer-specific portions of Makefiles... no checking bindir... /usr/lib/gmap checking for a working version of perl... /usr/bin/perl checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/s390x-linux-gnu-ld checking if the linker (/usr/bin/s390x-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/s390x-linux-gnu-ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/s390x-linux-gnu-ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for C compiler vendor... gnu checking for rint in -lm... yes checking whether to use MPI_File for input... not specified so enabled by default checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking whether byte ordering is bigendian... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... yes checking for off_t... yes checking for caddr_t... yes checking size of unsigned long... 8 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so enabled by default checking for working alloca.h... yes checking for alloca... yes checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... yes checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... yes checking for ceil... yes checking for floor... yes checking for index... yes checking for log... yes checking for madvise... yes checking for memcpy... yes checking for memmove... yes checking for memset... yes checking for munmap... yes checking for pow... yes checking for rint... yes checking for stat64... yes checking for strtoul... yes checking for sysconf... yes checking for sysctl... yes checking for sigaction... yes checking for shmget... yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking whether C compiler accepts -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -mpopcnt... no configure: WARNING: Your compiler does not support -mpopcnt checking for __builtin_popcount... yes checking for __builtin_clz... yes checking for __builtin_ctz... yes checking for bsr instruction in assembly... yes checking compiler is defective and requires an immediate in sse2 shift commands... yes checking for whether simd is enabled... not specified so enabled by default checking for sse2 support... no checking for ssse3 support... no checking for sse4.1 support... no checking for sse4.2 support... no checking for popcnt support... no checking for bmi1 support... no checking for avx2 support... no checking for bmi2 support... no checking for avx512 support... no checking gmapdb... /var/cache/gmap checking MAX_STACK_READLENGTH... 300 checking for zlib support... enabled checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/gmap_compress.pl config.status: creating util/gmap_uncompress.pl config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_reassemble.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_transcript_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: WARNING: Your C compiler does not know how to handle a particular form of the SSE2 shift commands, and must be somewhat old (probably gcc 4.1 or gcc 4.2). The configure script has therefore substituted alternate C code that your compiler can handle. However, for optimal performance, you may want to obtain a more recent C compiler and build the code with that. checking standard compiler and flags to be used... gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security checking standard linker flags to be used... checking pthread compiler flags to be used... -pthread checking popcnt flags to be used... checking compile level... none make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 -O Making all in src make all-am make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-assert.lo `test -f 'assert.c' || echo './'`assert.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c assert.c -fPIC -DPIC -o .libs/libgmap_la-assert.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c assert.c -o libgmap_la-assert.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-except.lo `test -f 'except.c' || echo './'`except.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c except.c -fPIC -DPIC -o .libs/libgmap_la-except.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c except.c -o libgmap_la-except.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-mem.lo `test -f 'mem.c' || echo './'`mem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mem.c -fPIC -DPIC -o .libs/libgmap_la-mem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mem.c -o libgmap_la-mem.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-intlist.lo `test -f 'intlist.c' || echo './'`intlist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c intlist.c -fPIC -DPIC -o .libs/libgmap_la-intlist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c intlist.c -o libgmap_la-intlist.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-littleendian.lo `test -f 'littleendian.c' || echo './'`littleendian.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c littleendian.c -fPIC -DPIC -o .libs/libgmap_la-littleendian.o littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c littleendian.c -o libgmap_la-littleendian.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-doublelist.lo `test -f 'doublelist.c' || echo './'`doublelist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c doublelist.c -fPIC -DPIC -o .libs/libgmap_la-doublelist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c doublelist.c -o libgmap_la-doublelist.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-list.lo `test -f 'list.c' || echo './'`list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -fPIC -DPIC -o .libs/libgmap_la-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -o libgmap_la-list.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-interval.lo `test -f 'interval.c' || echo './'`interval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c interval.c -fPIC -DPIC -o .libs/libgmap_la-interval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c interval.c -o libgmap_la-interval.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-bigendian.lo `test -f 'bigendian.c' || echo './'`bigendian.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bigendian.c -fPIC -DPIC -o .libs/libgmap_la-bigendian.o bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bigendian.c -o libgmap_la-bigendian.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-uint8list.lo `test -f 'uint8list.c' || echo './'`uint8list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uint8list.c -fPIC -DPIC -o .libs/libgmap_la-uint8list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uint8list.c -o libgmap_la-uint8list.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-uintlist.lo `test -f 'uintlist.c' || echo './'`uintlist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uintlist.c -fPIC -DPIC -o .libs/libgmap_la-uintlist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uintlist.c -o libgmap_la-uintlist.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-univinterval.lo `test -f 'univinterval.c' || echo './'`univinterval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c univinterval.c -fPIC -DPIC -o .libs/libgmap_la-univinterval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c univinterval.c -o libgmap_la-univinterval.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-parserange.lo `test -f 'parserange.c' || echo './'`parserange.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c parserange.c -fPIC -DPIC -o .libs/libgmap_la-parserange.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c parserange.c -o libgmap_la-parserange.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libgmap_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o libgmap_la-stopwatch.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-semaphore.lo `test -f 'semaphore.c' || echo './'`semaphore.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c semaphore.c -fPIC -DPIC -o .libs/libgmap_la-semaphore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c semaphore.c -o libgmap_la-semaphore.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-iit-write.lo `test -f 'iit-write.c' || echo './'`iit-write.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-write.c -fPIC -DPIC -o .libs/libgmap_la-iit-write.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-write.c -o libgmap_la-iit-write.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-iit-read-univ.lo `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-read-univ.c -fPIC -DPIC -o .libs/libgmap_la-iit-read-univ.o iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-read-univ.c -o libgmap_la-iit-read-univ.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-table.lo `test -f 'table.c' || echo './'`table.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c table.c -fPIC -DPIC -o .libs/libgmap_la-table.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c table.c -o libgmap_la-table.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-access.lo `test -f 'access.c' || echo './'`access.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c access.c -fPIC -DPIC -o .libs/libgmap_la-access.o access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c access.c -o libgmap_la-access.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-tableuint.lo `test -f 'tableuint.c' || echo './'`tableuint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tableuint.c -fPIC -DPIC -o .libs/libgmap_la-tableuint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tableuint.c -o libgmap_la-tableuint.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-uinttable.lo `test -f 'uinttable.c' || echo './'`uinttable.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uinttable.c -fPIC -DPIC -o .libs/libgmap_la-uinttable.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uinttable.c -o libgmap_la-uinttable.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-uinttableuint.lo `test -f 'uinttableuint.c' || echo './'`uinttableuint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uinttableuint.c -fPIC -DPIC -o .libs/libgmap_la-uinttableuint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c uinttableuint.c -o libgmap_la-uinttableuint.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-chrom.lo `test -f 'chrom.c' || echo './'`chrom.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c chrom.c -fPIC -DPIC -o .libs/libgmap_la-chrom.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c chrom.c -o libgmap_la-chrom.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-md5.lo `test -f 'md5.c' || echo './'`md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c md5.c -fPIC -DPIC -o .libs/libgmap_la-md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c md5.c -o libgmap_la-md5.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-bzip2.lo `test -f 'bzip2.c' || echo './'`bzip2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bzip2.c -fPIC -DPIC -o .libs/libgmap_la-bzip2.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bzip2.c -o libgmap_la-bzip2.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-filestring.lo `test -f 'filestring.c' || echo './'`filestring.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c filestring.c -fPIC -DPIC -o .libs/libgmap_la-filestring.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c filestring.c -o libgmap_la-filestring.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-genomicpos.lo `test -f 'genomicpos.c' || echo './'`genomicpos.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genomicpos.c -fPIC -DPIC -o .libs/libgmap_la-genomicpos.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genomicpos.c -o libgmap_la-genomicpos.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-sequence.lo `test -f 'sequence.c' || echo './'`sequence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -fPIC -DPIC -o .libs/libgmap_la-sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -o libgmap_la-sequence.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-bitpack64-readtwo.lo `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitpack64-readtwo.c -fPIC -DPIC -o .libs/libgmap_la-bitpack64-readtwo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitpack64-readtwo.c -o libgmap_la-bitpack64-readtwo.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-bitpack64-read.lo `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitpack64-read.c -fPIC -DPIC -o .libs/libgmap_la-bitpack64-read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bitpack64-read.c -o libgmap_la-bitpack64-read.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-popcount.lo `test -f 'popcount.c' || echo './'`popcount.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c popcount.c -fPIC -DPIC -o .libs/libgmap_la-popcount.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c popcount.c -o libgmap_la-popcount.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-iit-read.lo `test -f 'iit-read.c' || echo './'`iit-read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-read.c -fPIC -DPIC -o .libs/libgmap_la-iit-read.o iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iit-read.c -o libgmap_la-iit-read.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-compress.lo `test -f 'compress.c' || echo './'`compress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c compress.c -fPIC -DPIC -o .libs/libgmap_la-compress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c compress.c -o libgmap_la-compress.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-bytecoding.lo `test -f 'bytecoding.c' || echo './'`bytecoding.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bytecoding.c -fPIC -DPIC -o .libs/libgmap_la-bytecoding.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bytecoding.c -o libgmap_la-bytecoding.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-chrnum.lo `test -f 'chrnum.c' || echo './'`chrnum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c chrnum.c -fPIC -DPIC -o .libs/libgmap_la-chrnum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c chrnum.c -o libgmap_la-chrnum.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-sarray-read.lo `test -f 'sarray-read.c' || echo './'`sarray-read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sarray-read.c -fPIC -DPIC -o .libs/libgmap_la-sarray-read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sarray-read.c -o libgmap_la-sarray-read.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-datadir.lo `test -f 'datadir.c' || echo './'`datadir.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c datadir.c -fPIC -DPIC -o .libs/libgmap_la-datadir.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c datadir.c -o libgmap_la-datadir.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DMAIN=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-maxent_hr.lo `test -f 'maxent_hr.c' || echo './'`maxent_hr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c maxent_hr.c -fPIC -DPIC -o .libs/libgmap_la-maxent_hr.o maxent_hr.c: In function ‘Maxent_hr_donor_prob’: maxent_hr.c:27249:12: warning: implicit declaration of function ‘Bigendian_convert_uint’ [-Wimplicit-function-declaration] high = Bigendian_convert_uint(ref_blocks[ptr]); ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c maxent_hr.c -o libgmap_la-maxent_hr.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-genome.lo `test -f 'genome.c' || echo './'`genome.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genome.c -fPIC -DPIC -o .libs/libgmap_la-genome.o genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genome.c -o libgmap_la-genome.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgmap_la-genome128_hr.lo `test -f 'genome128_hr.c' || echo './'`genome128_hr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genome128_hr.c -fPIC -DPIC -o .libs/libgmap_la-genome128_hr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fPIC -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c genome128_hr.c -o libgmap_la-genome128_hr.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1927:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo './'`saca-k.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo './'`sarray-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c iit_store.c: In function ‘parse_fieldlist’: iit_store.c:494:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(&(Buffer[1]),LINELENGTH-1,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit_store.c: In function ‘parse_fasta’: iit_store.c:530:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer,LINELENGTH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ iit_store.c:533:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(&(Buffer[1]),LINELENGTH-1,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-reader.o `test -f 'reader.c' || echo './'`reader.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-compress.o `test -f 'compress.c' || echo './'`compress.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-popcount.o `test -f 'popcount.c' || echo './'`popcount.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-merge.o `test -f 'merge.c' || echo './'`merge.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-oligo.o `test -f 'oligo.c' || echo './'`oligo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c indexdb_hr.c: In function ‘positions_read_multiple’: indexdb_hr.c:247:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1927:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-mapq.o `test -f 'mapq.c' || echo './'`mapq.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-junction.o `test -f 'junction.c' || echo './'`junction.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-shortread.o `test -f 'shortread.c' || echo './'`shortread.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c maxent_hr.c: In function ‘Maxent_hr_donor_prob’: maxent_hr.c:27249:12: warning: implicit declaration of function ‘Bigendian_convert_uint’ [-Wimplicit-function-declaration] high = Bigendian_convert_uint(ref_blocks[ptr]); ^~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-cmet.o `test -f 'cmet.c' || echo './'`cmet.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-substring.o `test -f 'substring.c' || echo './'`substring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-atoi.o `test -f 'atoi.c' || echo './'`atoi.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-cigar.o `test -f 'cigar.c' || echo './'`cigar.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-diag.o `test -f 'diag.c' || echo './'`diag.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-maxent.o `test -f 'maxent.c' || echo './'`maxent.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-stage2.o `test -f 'stage2.c' || echo './'`stage2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-pair.o `test -f 'pair.c' || echo './'`pair.c pair.c: In function ‘print_gff3_exons_forward.constprop’: pair.c:2826:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2829:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2832:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2891:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2896:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2903:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2907:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2926:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2930:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2987:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2990:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2993:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c: In function ‘Pair_compute_cigar’: pair.c:6082:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",ptr->querypos - (*hardclip_start)); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6111:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6114:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6117:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6120:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6219:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6223:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6228:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6236:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6240:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6244:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6258:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6262:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6279:26: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6291:26: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6316:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6319:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6322:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6325:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6336:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dH",*hardclip_end); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6348:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",querylength_given - 1 - (*hardclip_end) - last_querypos); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5806:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",ptr->querypos - (*hardclip_start)); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5835:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5838:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5841:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5940:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5945:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5953:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5957:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5971:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5975:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5998:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6001:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6004:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6015:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dH",*hardclip_end); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6027:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",querylength_given - 1 - (*hardclip_end) - last_querypos); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-intron.o `test -f 'intron.c' || echo './'`intron.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c oligoindex_hr.c: In function ‘count_positions_fwd_std’: oligoindex_hr.c:19310:12: warning: implicit declaration of function ‘Bigendian_convert_uint’ [-Wimplicit-function-declaration] high = Bigendian_convert_uint(ref_blocks[ptr]); ^~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-translation.o `test -f 'translation.c' || echo './'`translation.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-smooth.o `test -f 'smooth.c' || echo './'`smooth.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-chimera.o `test -f 'chimera.c' || echo './'`chimera.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-indel.o `test -f 'indel.c' || echo './'`indel.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-splice.o `test -f 'splice.c' || echo './'`splice.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-sarray-read.o `test -f 'sarray-read.c' || echo './'`sarray-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-merge-heap.o `test -f 'merge-heap.c' || echo './'`merge-heap.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-datadir.o `test -f 'datadir.c' || echo './'`datadir.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-uniqscan.o `test -f 'uniqscan.c' || echo './'`uniqscan.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-stage3.o `test -f 'stage3.c' || echo './'`stage3.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-sarray-search.o `test -f 'sarray-search.c' || echo './'`sarray-search.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-reader.o `test -f 'reader.c' || echo './'`reader.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-compress.o `test -f 'compress.c' || echo './'`compress.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-popcount.o `test -f 'popcount.c' || echo './'`popcount.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-merge.o `test -f 'merge.c' || echo './'`merge.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-oligo.o `test -f 'oligo.c' || echo './'`oligo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘positions_read_multiple_large’: indexdb.c:1868:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_high_fd,buffer,1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ indexdb.c:1872:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_low_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-mapq.o `test -f 'mapq.c' || echo './'`mapq.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscan-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-shortread.o `test -f 'shortread.c' || echo './'`shortread.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-junction.o `test -f 'junction.c' || echo './'`junction.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-substring.o `test -f 'substring.c' || echo './'`substring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-cmet.o `test -f 'cmet.c' || echo './'`cmet.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c maxent_hr.c: In function ‘Maxent_hr_donor_prob’: maxent_hr.c:27249:12: warning: implicit declaration of function ‘Bigendian_convert_uint’ [-Wimplicit-function-declaration] high = Bigendian_convert_uint(ref_blocks[ptr]); ^~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-atoi.o `test -f 'atoi.c' || echo './'`atoi.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-cigar.o `test -f 'cigar.c' || echo './'`cigar.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-maxent.o `test -f 'maxent.c' || echo './'`maxent.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-diag.o `test -f 'diag.c' || echo './'`diag.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-stage2.o `test -f 'stage2.c' || echo './'`stage2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-pair.o `test -f 'pair.c' || echo './'`pair.c pair.c: In function ‘print_gff3_exons_forward.constprop’: pair.c:2826:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2829:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2832:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2891:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2896:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2903:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2907:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2926:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2930:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2987:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"M%d",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2990:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"I%d",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:2993:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"D%d",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c: In function ‘Pair_compute_cigar’: pair.c:6082:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",ptr->querypos - (*hardclip_start)); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6111:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6114:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6117:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6120:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6219:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6223:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6228:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6236:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6240:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6244:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6258:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6262:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6279:26: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6291:26: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6316:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%d=",Elength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6319:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dX",Xlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6322:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6325:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6336:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dH",*hardclip_end); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6348:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",querylength_given - 1 - (*hardclip_end) - last_querypos); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5806:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",ptr->querypos - (*hardclip_start)); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5835:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5838:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5841:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5940:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5945:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5953:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5957:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5971:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5975:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:5998:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dM",Mlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6001:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dI",Ilength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6004:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dD",Dlength); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6015:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dH",*hardclip_end); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pair.c:6027:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(token,"%dS",querylength_given - 1 - (*hardclip_end) - last_querypos); ^ In file included from /usr/include/stdio.h:862:0, from iit-read-univ.h:11, from chrnum.h:8, from pair.h:9, from pair.c:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 11 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-intron.o `test -f 'intron.c' || echo './'`intron.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c oligoindex_hr.c: In function ‘count_positions_fwd_std’: oligoindex_hr.c:19310:12: warning: implicit declaration of function ‘Bigendian_convert_uint’ [-Wimplicit-function-declaration] high = Bigendian_convert_uint(ref_blocks[ptr]); ^~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-translation.o `test -f 'translation.c' || echo './'`translation.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-smooth.o `test -f 'smooth.c' || echo './'`smooth.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-chimera.o `test -f 'chimera.c' || echo './'`chimera.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-indel.o `test -f 'indel.c' || echo './'`indel.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-splice.o `test -f 'splice.c' || echo './'`splice.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-merge-heap.o `test -f 'merge-heap.c' || echo './'`merge-heap.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-datadir.o `test -f 'datadir.c' || echo './'`datadir.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-uniqscan.o `test -f 'uniqscan.c' || echo './'`uniqscan.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-stage3.o `test -f 'stage3.c' || echo './'`stage3.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1927:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c littleendian.c: In function ‘Littleendian_write_char’: littleendian.c:14:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint’: littleendian.c:27:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8’: littleendian.c:44:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ littleendian.c: In function ‘Littleendian_write_uint8_as_uint’: littleendian.c:57:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ littleendian.c:63:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c bigendian.c: In function ‘Bigendian_write_char’: bigendian.c:16:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,1); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint’: bigendian.c:176:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,4); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint’: bigendian.c:260:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,4); ^~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_write_uint8’: bigendian.c:328:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] write(fd,buf,8); ^~~~~~~~~~~~~~~ bigendian.c: In function ‘Bigendian_fileio_read_uint8’: bigendian.c:445:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(fd,buf,8); ^~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c snpindex.c: In function ‘merge_positions8’: snpindex.c:1027:57: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘UINT8 {aka long long unsigned int}’ [-Wformat=] fprintf(stderr,"Problem: saw duplicate positions %u in oligo %s\n",position1,nt); ~^ %llu make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c access.c: In function ‘copy_memory_from_file’: access.c:490:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:495:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:501:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:506:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:512:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:517:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize - i,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c: In function ‘copy_limited_from_file’: access.c:543:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:545:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(unsigned char),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:551:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:553:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT4),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:559:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),FREAD_BATCH,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ access.c:561:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(p,sizeof(UINT8),filesize/eltsize,fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c iit-read-univ.c: In function ‘read_annotations’: iit-read-univ.c:1477:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1481:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1485:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1489:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read-univ.c:1493:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DTARGET=\"s390x-ibm-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o uniqscanl-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c iit-read.c: In function ‘read_annotations’: iit-read.c:2485:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->valueorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2489:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->values,new->value_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2494:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelorder,new->total_nintervals*sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2500:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2505:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2516:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->labels,new->label_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2522:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2527:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ iit-read.c:2538:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(new->fd,new->annotations,new->annot_length*sizeof(char)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c indexdb.c: In function ‘positions_read_multiple’: indexdb.c:1927:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(positions_fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-saca-k.o `test -f 'saca-k.c' || echo './'`saca-k.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c cmetindex.c: In function ‘compute_ct’: cmetindex.c:703:20: error: ‘pointers’ undeclared (first use in this function); did you mean ‘power’? positions8_high[pointers[reduced]/*++*/] = Bigendian_convert_uint8(oldpositions8[j]) >> POSITIONS8_HIGH_SHIFT; ^~~~~~~~ power cmetindex.c:703:20: note: each undeclared identifier is reported only once for each function it appears in cmetindex.c:808:1: error: invalid storage class for function ‘compute_ga’ compute_ga (char *new_pointers_filename, char *new_offsets_filename, ^~~~~~~~~~ cmetindex.c: In function ‘compute_ga’: cmetindex.c:1578:1: error: invalid storage class for function ‘print_program_usage’ print_program_usage () { ^~~~~~~~~~~~~~~~~~~ cmetindex.c:1606:1: error: expected declaration or statement at end of input } ^ cmetindex.c: In function ‘compute_ct’: cmetindex.c:1606:1: error: expected declaration or statement at end of input cmetindex.c: At top level: cmetindex.c:136:1: warning: ‘print_program_usage’ used but never defined print_program_usage (); ^~~~~~~~~~~~~~~~~~~ Makefile:8206: recipe for target 'cmetindex-cmetindex.o' failed make[3]: *** [cmetindex-cmetindex.o] Error 1 make[3]: Leaving directory '/<>/src' make[3]: *** Waiting for unfinished jobs.... make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-sarray-write.o `test -f 'sarray-write.c' || echo './'`sarray-write.c make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c genome.c: In function ‘fill_buffer’: genome.c:10592:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘genomecomp_read_current’: genome.c:462:3: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,buffer,4); ^~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple’: genome.c:10723:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_fill_buffer_simple_alt’: genome.c:10843:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(genomealt->fd,gbuffer1,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_get_char’: genome.c:11012:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer1,/*length*/1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ genome.c: In function ‘Genome_ntcounts’: genome.c:11312:7: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result [-Wunused-result] read(this->fd,gbuffer,length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/src' Makefile:3418: recipe for target 'all' failed make[2]: *** [all] Error 2 Makefile:431: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 dh_auto_build: make -j4 -O returned exit code 2 debian/rules:19: recipe for target 'build-arch' failed make: *** [build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180427-1439 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 133068 Build-Time: 63 Distribution: bionic Fail-Stage: build Host Architecture: s390x Install-Time: 9 Job: gmap_2017-11-15-1.dsc Machine Architecture: s390x Package: gmap Package-Time: 74 Source-Version: 2017-11-15-1 Space: 133068 Status: attempted Version: 2017-11-15-1 -------------------------------------------------------------------------------- Finished at 20180427-1439 Build needed 00:01:14, 133068k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 Scanning for processes to kill in build PACKAGEBUILD-14567490 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 Stopping target for build PACKAGEBUILD-14567490 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14567490 Removing build PACKAGEBUILD-14567490