https://launchpad.net/ubuntu/+archive/test-rebuild-20180408/+build/14586183 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-018 4.4.0-121-generic #145-Ubuntu SMP Fri Apr 13 13:47:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Apr 12:29:15 ntpdate[1834]: adjust time server 10.211.37.1 offset -0.014420 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-14586183 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 Starting target for build PACKAGEBUILD-14586183 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-14586183 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 Updating target for build PACKAGEBUILD-14586183 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [968 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main Translation-en [516 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8269 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/multiverse armhf Packages [129 kB] Fetched 15.2 MB in 6s (2557 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14586183 armhf bionic -c chroot:build-PACKAGEBUILD-14586183 --arch=armhf --dist=bionic --nolog libbiod_0.1.0-5build1.dsc Initiating build PACKAGEBUILD-14586183 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-121-generic #145-Ubuntu SMP Fri Apr 13 13:47:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-018.buildd +==============================================================================+ | libbiod 0.1.0-5build1 (armhf) 27 Apr 2018 12:29 | +==============================================================================+ Package: libbiod Version: 0.1.0-5build1 Source Version: 0.1.0-5build1 Distribution: bionic Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/libbiod-asmauU/libbiod-0.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/libbiod-asmauU' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14586183/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbiod_0.1.0-5build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Sgviyo/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Sgviyo/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Sgviyo/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Sgviyo/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Sgviyo/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Sgviyo/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (109 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Sgviyo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-dlang, meson (>= 0.40), pkg-config, libundead-dev (>= 1.0.9-2), zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), dh-dlang, meson (>= 0.40), pkg-config, libundead-dev (>= 1.0.9-2), zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-libbiod-dummy' in '/<>/resolver-YPupxG/apt_archive/sbuild-build-depends-libbiod-dummy.deb'. Ign:1 copy:/<>/resolver-YPupxG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YPupxG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YPupxG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YPupxG/apt_archive ./ Sources [260 B] Get:5 copy:/<>/resolver-YPupxG/apt_archive ./ Packages [575 B] Fetched 2954 B in 0s (126 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbiod build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper default-d-compiler dh-autoreconf dh-dlang dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian ldc libarchive-zip-perl libbsd0 libcroco3 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libllvm5.0 libmagic-mgc libmagic1 libmpdec2 libphobos2-ldc-shared-dev libphobos2-ldc-shared78 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libundead-dev libundead0 libxml2 m4 man-db meson mime-support ninja-build pkg-config po-debconf python3 python3-minimal python3.6 python3.6-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv python3.6-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper default-d-compiler dh-autoreconf dh-dlang dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian ldc libarchive-zip-perl libbsd0 libcroco3 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libllvm5.0 libmagic-mgc libmagic1 libmpdec2 libphobos2-ldc-shared-dev libphobos2-ldc-shared78 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libundead-dev libundead0 libxml2 m4 man-db meson mime-support ninja-build pkg-config po-debconf python3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-libbiod-dummy zlib1g-dev 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 48.4 MB of archives. After this operation, 205 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YPupxG/apt_archive ./ sbuild-build-depends-libbiod-dummy 0.invalid.0 [908 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf libpython3.6-minimal armhf 3.6.5-3 [524 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf libexpat1 armhf 2.2.5-3 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf python3.6-minimal armhf 3.6.5-3 [1216 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf python3-minimal armhf 3.6.5-3 [23.8 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libmpdec2 armhf 2.4.2-1ubuntu1 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main armhf libpython3.6-stdlib armhf 3.6.5-3 [1595 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf python3.6 armhf 3.6.5-3 [186 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf libpython3-stdlib armhf 3.6.5-3 [7276 B] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf python3 armhf 3.6.5-3 [10.2 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf bsdmainutils armhf 11.1.2ubuntu1 [177 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf man-db armhf 2.8.3-2 [993 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf libmagic-mgc armhf 1:5.32-2 [184 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf libmagic1 armhf 1:5.32-2 [62.7 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf file armhf 1:5.32-2 [21.5 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libglib2.0-0 armhf 2.56.1-2ubuntu1 [1014 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1 [567 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf gettext-base armhf 0.19.8.1-6 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libedit2 armhf 3.1-20170329-1 [61.9 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf libsigsegv2 armhf 2.12-1 [14.0 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf autoconf all 2.69-11 [322 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf autopoint all 0.19.8.1-6 [412 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 17 [15.8 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf gettext armhf 0.19.8.1-6 [833 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main armhf debhelper all 11.1.6ubuntu1 [902 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/universe armhf libphobos2-ldc-shared78 armhf 1:1.8.0-1 [6955 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/universe armhf libphobos2-ldc-shared-dev armhf 1:1.8.0-1 [6248 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/universe armhf libllvm5.0 armhf 1:5.0.1-4 [12.6 MB] Get:45 http://ftpmaster.internal/ubuntu bionic/universe armhf ldc armhf 1:1.8.0-1 [2384 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/universe armhf default-d-compiler armhf 0.5 [2360 B] Get:47 http://ftpmaster.internal/ubuntu bionic/universe armhf dh-dlang all 0.5 [3540 B] Get:48 http://ftpmaster.internal/ubuntu bionic/universe armhf libundead0 armhf 1.0.9-2 [78.8 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/universe armhf libundead-dev armhf 1.0.9-2 [61.7 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/universe armhf ninja-build armhf 1.8.2-1 [82.6 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/universe armhf meson all 0.45.1-2 [216 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.4 MB in 3s (14.0 MB/s) Selecting previously unselected package libpython3.6-minimal:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../0-libpython3.6-minimal_3.6.5-3_armhf.deb ... Unpacking libpython3.6-minimal:armhf (3.6.5-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../1-libexpat1_2.2.5-3_armhf.deb ... Unpacking libexpat1:armhf (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../2-python3.6-minimal_3.6.5-3_armhf.deb ... Unpacking python3.6-minimal (3.6.5-3) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.6.5-3_armhf.deb ... Unpacking python3-minimal (3.6.5-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:armhf. Preparing to unpack .../5-libmpdec2_2.4.2-1ubuntu1_armhf.deb ... 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Setting up libedit2:armhf (3.1-20170329-1) ... Setting up libicu60:armhf (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libphobos2-ldc-shared78:armhf (1:1.8.0-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libphobos2-ldc-shared-dev (1:1.8.0-1) ... Setting up libllvm5.0:armhf (1:5.0.1-4) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:armhf (1:5.32-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up libundead0 (1.0.9-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ldc (1:1.8.0-1) ... Setting up ninja-build (1.8.2-1) ... Setting up autopoint (0.19.8.1-6) ... Setting up libmpdec2:armhf (2.4.2-1ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libpython3.6-stdlib:armhf (3.6.5-3) ... Setting up python3.6 (3.6.5-3) ... Setting up gettext (0.19.8.1-6) ... Setting up libundead-dev (1.0.9-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up default-d-compiler (0.5) ... 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Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-121-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-15ubuntu1 dpkg-dev_1.19.0.5ubuntu2 g++-7_7.3.0-16ubuntu3 gcc-7_7.3.0-16ubuntu3 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1ubuntu2 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-15ubuntu1 binutils-arm-linux-gnueabihf_2.30-15ubuntu1 binutils-common_2.30-15ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2 cpp-7_7.3.0-16ubuntu3 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu1 debianutils_4.8.4 default-d-compiler_0.5 dh-autoreconf_17 dh-dlang_0.5 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2 dpkg-dev_1.19.0.5ubuntu2 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2 g++-7_7.3.0-16ubuntu3 gcc_4:7.3.0-3ubuntu2 gcc-7_7.3.0-16ubuntu3 gcc-7-base_7.3.0-16ubuntu3 gcc-8-base_8-20180414-1ubuntu2 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 ldc_1:1.8.0-1 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-16ubuntu3 libassuan0_2.5.1-2 libatomic1_8-20180414-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-15ubuntu1 libblkid1_2.31.1-0.4ubuntu3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8-20180414-1ubuntu2 libcilkrts5_7.3.0-16ubuntu3 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-16ubuntu3 libgcc1_1:8-20180414-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8-20180414-1ubuntu2 libgpg-error0_1.27-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 libllvm5.0_1:5.0.1-4 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpdec2_2.4.2-1ubuntu1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libphobos2-ldc-shared-dev_1:1.8.0-1 libphobos2-ldc-shared78_1:1.8.0-1 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.5-3 libpython3.6-stdlib_3.6.5-3 libreadline7_7.0-3 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libubsan0_7.3.0-16ubuntu3 libudev1_237-3ubuntu10 libundead-dev_1.0.9-2 libundead0_1.0.9-2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libuuid1_2.31.1-0.4ubuntu3 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 meson_0.45.1-2 mime-support_3.60ubuntu1 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 ninja-build_1.8.2-1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 python3_3.6.5-3 python3-minimal_3.6.5-3 python3.6_3.6.5-3 python3.6-minimal_3.6.5-3 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbiod-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Mar 21 00:06:23 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbiod_0.1.0-5build1.dsc dpkg-source: info: extracting libbiod in libbiod-0.1.0 dpkg-source: info: unpacking libbiod_0.1.0.orig.tar.gz dpkg-source: info: unpacking libbiod_0.1.0-5build1.debian.tar.xz dpkg-source: info: applying 0002-improved-big-endian-support.patch dpkg-source: info: applying 0003-include-the-AH-header-tag-to-SQ-lines.patch dpkg-source: info: applying 0004-use-consistent-naming-21.patch dpkg-source: info: applying 0005-fixes-lomereiter-sambamba-244.patch dpkg-source: info: applying 0006-switch-to-undead.stream.patch dpkg-source: info: applying 0007-std.c-core.stdc.patch dpkg-source: info: applying 0008-fix-deprecations-and-some-warnings.patch dpkg-source: info: applying 0009-fix-toHash-signature.patch dpkg-source: info: applying 0011-better-.travis.yml-uses-dub-test-and-tests-ldc.patch dpkg-source: info: applying 0013-fix-toJSON-usage-for-new-and-old-compilers.patch dpkg-source: info: applying 0014-Add-compareCoordinatesAndStrand-to-fix-sorting-test-.patch dpkg-source: info: applying 0015-Add-Meson-build-definition.patch dpkg-source: info: applying 0016-fix-type-conversion.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14586183 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14586183 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14586183 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbiod dpkg-buildpackage: info: source version 0.1.0-5build1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build libbiod-0.1.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dpkg-query: no packages found matching gdc dh clean dh_auto_clean dh_clean debian/rules build-arch dpkg-query: no packages found matching gdc dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf The Meson build system Version: 0.45.1 Source dir: /<> Build dir: /<>/obj-arm-linux-gnueabihf Build type: native build Project name: BioD Native D compiler: ldc2 (llvm 1.8.0 "LDC - the LLVM D compiler (1.8.0):") Appending DFLAGS from environment: '-O -g -release -wi -mattr=-neon' Appending LDFLAGS from environment: '-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now' Build machine cpu family: arm Build machine cpu: armv7l Found pkg-config: /usr/bin/pkg-config (0.29.1) Native dependency undead found: YES 1.0.7 Native dependency zlib found: YES 1.2.11 Build targets in project: 2 Found ninja-1.8.2 at /usr/bin/ninja dh_auto_build -a cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v [1/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d [2/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_utils_graph.d.o' -c 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ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_iontorrent_flowindex.d.o' -c ../bio/bam/iontorrent/flowindex.d [9/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_reader.d.o' -c ../bio/bam/reader.d [10/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_thirdparty_msgpack.d.o' -c ../bio/bam/thirdparty/msgpack.d [11/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_splitter.d.o' -c ../bio/bam/splitter.d [12/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_bai_bin.d.o' -c ../bio/bam/bai/bin.d [13/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_iontorrent_flowcall.d.o' -c ../bio/bam/iontorrent/flowcall.d [14/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_abstractreader.d.o' -c ../bio/bam/abstractreader.d [15/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_bai_indexing.d.o' -c ../bio/bam/bai/indexing.d [16/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_md_core.d.o' -c ../bio/bam/md/core.d [17/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_reference.d.o' -c ../bio/bam/reference.d [18/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_md_operation.d.o' -c ../bio/bam/md/operation.d [19/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_md_reconstruct.d.o' -c ../bio/bam/md/reconstruct.d [20/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_md_parse.d.o' -c ../bio/bam/md/parse.d [21/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_validation_samheader.d.o' -c ../bio/bam/validation/samheader.d [22/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_region.d.o' -c ../bio/bam/region.d [23/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_validation_alignment.d.o' -c ../bio/bam/validation/alignment.d [24/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_tagvalue.d.o' -c ../bio/bam/tagvalue.d [25/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_constants.d.o' -c ../bio/bam/constants.d [26/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_randomaccessmanager.d.o' -c ../bio/bam/randomaccessmanager.d [27/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_referenceinfo.d.o' -c ../bio/bam/referenceinfo.d [28/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_snpcallers_simple.d.o' -c ../bio/bam/snpcallers/simple.d [29/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_snpcallers_maq.d.o' -c ../bio/bam/snpcallers/maq.d [30/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_writer.d.o' -c ../bio/bam/writer.d [31/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_baseinfo.d.o' -c ../bio/bam/baseinfo.d [32/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_maf_reader.d.o' -c ../bio/maf/reader.d [33/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_maf_block.d.o' -c ../bio/maf/block.d [34/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d [35/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_algo.d.o' -c ../bio/core/utils/algo.d [36/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d [37/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_stream.d.o' -c ../bio/core/utils/stream.d [38/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_zlib.d.o' -c ../bio/core/utils/zlib.d [39/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_bam_read.d.o' -c ../bio/bam/read.d ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` ../bio/bam/read.d(1236): Deprecation: integral promotion not done for `~mask`, use '-transition=intpromote' switch or `~cast(int)(mask)` [40/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d [41/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d [42/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_maf_parser.d.o' -c ../bio/maf/parser.d [43/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_format.d.o' -c ../bio/core/utils/format.d [44/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_range.d.o' -c ../bio/core/utils/range.d [45/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_switchendianness.d.o' -c ../bio/core/utils/switchendianness.d [46/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_genotype.d.o' -c ../bio/core/genotype.d [47/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d [48/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d [49/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_base.d.o' -c ../bio/core/base.d [50/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_kmer.d.o' -c ../bio/core/kmer.d [51/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_region.d.o' -c ../bio/core/region.d [52/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_tinymap.d.o' -c ../bio/core/tinymap.d [53/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_sequence.d.o' -c ../bio/core/sequence.d [54/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_chunk.d.o' -c ../bio/core/bgzf/chunk.d [55/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d [56/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d [57/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_outputstream.d.o' -c ../bio/core/bgzf/outputstream.d [58/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_fasta.d.o' -c ../bio/core/fasta.d [59/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d [60/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d [61/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d [62/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_index.d.o' -c ../bio/sff/index.d [63/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_call.d.o' -c ../bio/core/call.d [64/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d [65/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_constants.d.o' -c ../bio/sff/constants.d [66/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_read.d.o' -c ../bio/sff/read.d [67/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_tagvalue.d.o' -c ../bio/bam/tagvalue.d [68/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_readrange.d.o' -c ../bio/sff/readrange.d [69/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_reader.d.o' -c ../bio/sff/reader.d [70/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sff_writer.d.o' -c ../bio/sff/writer.d [71/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sam_utils_recordparser.d.o' -c ../bio/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [72/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sam_reader.d.o' -c ../bio/sam/reader.d [73/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_md_core.d.o' -c ../bio/bam/md/core.d [74/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [75/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_md_operation.d.o' -c ../bio/bam/md/operation.d [76/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -relocation-model=pic -of 'biod@sha/bio_sam_header.d.o' -c ../bio/sam/header.d [77/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_reference.d.o' -c ../bio/bam/reference.d [78/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_utils_value.d.o' -c ../bio/bam/utils/value.d [79/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_md_parse.d.o' -c ../bio/bam/md/parse.d [80/149] ldc2 -of libbiod.so.0.1.0 'biod@sha/bio_bam_utils_value.d.o' 'biod@sha/bio_bam_utils_samheadermerger.d.o' 'biod@sha/bio_bam_utils_array.d.o' 'biod@sha/bio_bam_utils_graph.d.o' 'biod@sha/bio_bam_pileup.d.o' 'biod@sha/bio_bam_readrange.d.o' 'biod@sha/bio_bam_reader.d.o' 'biod@sha/bio_bam_thirdparty_msgpack.d.o' 'biod@sha/bio_bam_baifile.d.o' 'biod@sha/bio_bam_iontorrent_flowcall.d.o' 'biod@sha/bio_bam_iontorrent_flowindex.d.o' 'biod@sha/bio_bam_splitter.d.o' 'biod@sha/bio_bam_abstractreader.d.o' 'biod@sha/bio_bam_bai_indexing.d.o' 'biod@sha/bio_bam_bai_bin.d.o' 'biod@sha/bio_bam_multireader.d.o' 'biod@sha/bio_bam_reference.d.o' 'biod@sha/bio_bam_md_operation.d.o' 'biod@sha/bio_bam_md_core.d.o' 'biod@sha/bio_bam_md_parse.d.o' 'biod@sha/bio_bam_md_reconstruct.d.o' 'biod@sha/bio_bam_tagvalue.d.o' 'biod@sha/bio_bam_validation_alignment.d.o' 'biod@sha/bio_bam_validation_samheader.d.o' 'biod@sha/bio_bam_region.d.o' 'biod@sha/bio_bam_randomaccessmanager.d.o' 'biod@sha/bio_bam_referenceinfo.d.o' 'biod@sha/bio_bam_constants.d.o' 'biod@sha/bio_bam_snpcallers_maq.d.o' 'biod@sha/bio_bam_snpcallers_simple.d.o' 'biod@sha/bio_bam_read.d.o' 'biod@sha/bio_bam_writer.d.o' 'biod@sha/bio_bam_baseinfo.d.o' 'biod@sha/bio_maf_reader.d.o' 'biod@sha/bio_maf_parser.d.o' 'biod@sha/bio_maf_block.d.o' 'biod@sha/bio_core_utils_memoize.d.o' 'biod@sha/bio_core_utils_algo.d.o' 'biod@sha/bio_core_utils_stream.d.o' 'biod@sha/bio_core_utils_zlib.d.o' 'biod@sha/bio_core_utils_tmpfile.d.o' 'biod@sha/bio_core_utils_roundbuf.d.o' 'biod@sha/bio_core_utils_format.d.o' 'biod@sha/bio_core_utils_bylinefast.d.o' 'biod@sha/bio_core_utils_range.d.o' 'biod@sha/bio_core_utils_switchendianness.d.o' 'biod@sha/bio_core_utils_outbuffer.d.o' 'biod@sha/bio_core_genotype.d.o' 'biod@sha/bio_core_fasta.d.o' 'biod@sha/bio_core_base.d.o' 'biod@sha/bio_core_kmer.d.o' 'biod@sha/bio_core_region.d.o' 'biod@sha/bio_core_tinymap.d.o' 'biod@sha/bio_core_sequence.d.o' 'biod@sha/bio_core_bgzf_outputstream.d.o' 'biod@sha/bio_core_bgzf_chunk.d.o' 'biod@sha/bio_core_bgzf_inputstream.d.o' 'biod@sha/bio_core_bgzf_constants.d.o' 'biod@sha/bio_core_bgzf_block.d.o' 'biod@sha/bio_core_bgzf_virtualoffset.d.o' 'biod@sha/bio_core_bgzf_compress.d.o' 'biod@sha/bio_core_call.d.o' 'biod@sha/bio_sff_utils_roundup.d.o' 'biod@sha/bio_sff_index.d.o' 'biod@sha/bio_sff_readrange.d.o' 'biod@sha/bio_sff_reader.d.o' 'biod@sha/bio_sff_constants.d.o' 'biod@sha/bio_sff_read.d.o' 'biod@sha/bio_sff_writer.d.o' 'biod@sha/bio_sam_utils_fastrecordparser.d.o' 'biod@sha/bio_sam_utils_recordparser.d.o' 'biod@sha/bio_sam_reader.d.o' 'biod@sha/bio_sam_header.d.o' -shared -relocation-model=pic -L-soname -Llibbiod.so.0 -O -g -release -wi -mattr=-neon -L-Bsymbolic-functions -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz [81/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d [82/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_utils_graph.d.o' -c ../bio/bam/utils/graph.d [83/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_md_reconstruct.d.o' -c ../bio/bam/md/reconstruct.d [84/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_readrange.d.o' -c ../bio/bam/readrange.d [85/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' -c ../bio/bam/utils/samheadermerger.d [86/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_pileup.d.o' -c ../bio/bam/pileup.d [87/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_reader.d.o' -c ../bio/bam/reader.d [88/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_baifile.d.o' -c ../bio/bam/baifile.d [89/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' -c ../bio/bam/iontorrent/flowindex.d [90/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_splitter.d.o' -c ../bio/bam/splitter.d [91/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' -c ../bio/bam/iontorrent/flowcall.d [92/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' -c ../bio/bam/thirdparty/msgpack.d ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-header`, use '-transition=intpromote' switch or `-cast(int)(header)` ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-header`, use '-transition=intpromote' switch or `-cast(int)(header)` ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-cast(byte)-header`, use '-transition=intpromote' switch or `-cast(int)(cast(byte)-header)` ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-header`, use '-transition=intpromote' switch or `-cast(int)(header)` ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-cast(short)-header`, use '-transition=intpromote' switch or `-cast(int)(cast(short)-header)` ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not done for `-header`, use '-transition=intpromote' switch or `-cast(int)(header)` [93/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_bai_bin.d.o' -c ../bio/bam/bai/bin.d [94/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_abstractreader.d.o' -c ../bio/bam/abstractreader.d [95/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_bai_indexing.d.o' -c ../bio/bam/bai/indexing.d [96/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_validation_samheader.d.o' -c ../bio/bam/validation/samheader.d [97/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_region.d.o' -c ../bio/bam/region.d [98/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/test_unittests.d.o' -c ../test/unittests.d ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` [99/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_validation_alignment.d.o' -c ../bio/bam/validation/alignment.d [100/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_constants.d.o' -c ../bio/bam/constants.d [101/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_referenceinfo.d.o' -c ../bio/bam/referenceinfo.d [102/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_snpcallers_maq.d.o' -c ../bio/bam/snpcallers/maq.d [103/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_snpcallers_simple.d.o' -c ../bio/bam/snpcallers/simple.d [104/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d [105/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_randomaccessmanager.d.o' -c ../bio/bam/randomaccessmanager.d [106/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_writer.d.o' -c ../bio/bam/writer.d [107/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_maf_reader.d.o' -c ../bio/maf/reader.d [108/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_maf_block.d.o' -c ../bio/maf/block.d [109/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_baseinfo.d.o' -c ../bio/bam/baseinfo.d [110/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_algo.d.o' -c ../bio/core/utils/algo.d [111/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_maf_parser.d.o' -c ../bio/maf/parser.d [112/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_stream.d.o' -c ../bio/core/utils/stream.d [113/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_zlib.d.o' -c ../bio/core/utils/zlib.d [114/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d [115/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_format.d.o' -c ../bio/core/utils/format.d [116/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d [117/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d [118/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_switchendianness.d.o' -c ../bio/core/utils/switchendianness.d [119/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_bam_read.d.o' -c ../bio/bam/read.d ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` ../bio/core/utils/format.d(61): Deprecation: integral promotion not done for `-value`, use '-transition=intpromote' switch or `-cast(int)(value)` ../bio/bam/read.d(1236): Deprecation: integral promotion not done for `~mask`, use '-transition=intpromote' switch or `~cast(int)(mask)` [120/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d [121/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d [122/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_genotype.d.o' -c ../bio/core/genotype.d [123/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_base.d.o' -c ../bio/core/base.d [124/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_utils_range.d.o' -c ../bio/core/utils/range.d [125/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_region.d.o' -c ../bio/core/region.d [126/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_kmer.d.o' -c ../bio/core/kmer.d [127/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_sequence.d.o' -c ../bio/core/sequence.d [128/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_chunk.d.o' -c ../bio/core/bgzf/chunk.d [129/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_fasta.d.o' -c ../bio/core/fasta.d [130/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d [131/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d [132/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d [133/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_tinymap.d.o' -c ../bio/core/tinymap.d [134/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d [135/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d [136/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_index.d.o' -c ../bio/sff/index.d [137/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d [138/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_bgzf_outputstream.d.o' -c ../bio/core/bgzf/outputstream.d [139/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_constants.d.o' -c ../bio/sff/constants.d [140/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_read.d.o' -c ../bio/sff/read.d [141/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_core_call.d.o' -c ../bio/core/call.d [142/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_readrange.d.o' -c ../bio/sff/readrange.d [143/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_reader.d.o' -c ../bio/sff/reader.d [144/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sff_writer.d.o' -c ../bio/sff/writer.d [145/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sam_reader.d.o' -c ../bio/sam/reader.d [146/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sam_utils_recordparser.d.o' -c ../bio/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [147/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sam_header.d.o' -c ../bio/sam/header.d [148/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d -enable-color -O -g -release -wi -mattr=-neon -unittest -of 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [149/149] ldc2 -of biod_test 'biod_test@exe/test_unittests.d.o' 'biod_test@exe/bio_bam_utils_value.d.o' 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' 'biod_test@exe/bio_bam_utils_array.d.o' 'biod_test@exe/bio_bam_utils_graph.d.o' 'biod_test@exe/bio_bam_pileup.d.o' 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reader.d.o' 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' 'biod_test@exe/bio_bam_baifile.d.o' 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_abstractreader.d.o' 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_reference.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_parse.d.o' 'biod_test@exe/bio_bam_md_reconstruct.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' 'biod_test@exe/bio_bam_validation_alignment.d.o' 'biod_test@exe/bio_bam_validation_samheader.d.o' 'biod_test@exe/bio_bam_region.d.o' 'biod_test@exe/bio_bam_randomaccessmanager.d.o' 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_constants.d.o' 'biod_test@exe/bio_bam_snpcallers_maq.d.o' 'biod_test@exe/bio_bam_snpcallers_simple.d.o' 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' 'biod_test@exe/bio_maf_reader.d.o' 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_block.d.o' 'biod_test@exe/bio_core_utils_memoize.d.o' 'biod_test@exe/bio_core_utils_algo.d.o' 'biod_test@exe/bio_core_utils_stream.d.o' 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_core_utils_tmpfile.d.o' 'biod_test@exe/bio_core_utils_roundbuf.d.o' 'biod_test@exe/bio_core_utils_format.d.o' 'biod_test@exe/bio_core_utils_bylinefast.d.o' 'biod_test@exe/bio_core_utils_range.d.o' 'biod_test@exe/bio_core_utils_switchendianness.d.o' 'biod_test@exe/bio_core_utils_outbuffer.d.o' 'biod_test@exe/bio_core_genotype.d.o' 'biod_test@exe/bio_core_fasta.d.o' 'biod_test@exe/bio_core_base.d.o' 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' 'biod_test@exe/bio_core_tinymap.d.o' 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_bgzf_outputstream.d.o' 'biod_test@exe/bio_core_bgzf_chunk.d.o' 'biod_test@exe/bio_core_bgzf_inputstream.d.o' 'biod_test@exe/bio_core_bgzf_constants.d.o' 'biod_test@exe/bio_core_bgzf_block.d.o' 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' 'biod_test@exe/bio_core_bgzf_compress.d.o' 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_index.d.o' 'biod_test@exe/bio_sff_readrange.d.o' 'biod_test@exe/bio_sff_reader.d.o' 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_writer.d.o' 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' 'biod_test@exe/bio_sam_utils_recordparser.d.o' 'biod_test@exe/bio_sam_reader.d.o' 'biod_test@exe/bio_sam_header.d.o' -O -g -release -wi -mattr=-neon -L-Bsymbolic-functions -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz dh_auto_test -a cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test [0/1] Running all tests. 1/1 biod_tests FAIL 0.55 s OK: 0 FAIL: 1 SKIP: 0 TIMEOUT: 0 The output from the failed tests: 1/1 biod_tests FAIL 0.55 s --- command --- /<>/obj-arm-linux-gnueabihf/biod_test --- stderr --- /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x28)[0xf6bc12b0] /lib/arm-linux-gnueabihf/libc.so.6(+0x25760)[0xf69ae760] /<>/obj-arm-linux-gnueabihf/biod_test(+0xbbf1c)[0xb3ff1c] /<>/obj-arm-linux-gnueabihf/biod_test(+0x7accc)[0xafeccc] /<>/obj-arm-linux-gnueabihf/biod_test(+0x785bc)[0xafc5bc] /<>/obj-arm-linux-gnueabihf/biod_test(+0xda6d8)[0xb5e6d8] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x30)[0xf6bc12f8] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x38)[0xf6bebefc] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x3c)[0xf6bed5a4] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xf6bebeac] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xf6bd7028] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(runModuleUnitTests+0xe4)[0xf6bc10f4] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_D2rt6dmain211_d_run_mainUiPPaPUAAaZiZ6runAllMFZv+0x20)[0xf6be2944] /usr/lib/arm-linux-gnueabihf/libdruntime-ldc-shared.so.78(_d_run_main+0x15c)[0xf6be2828] /lib/arm-linux-gnueabihf/libc.so.6(__libc_start_main+0x99)[0xf699ffe6] ------- Full log written to /<>/obj-arm-linux-gnueabihf/meson-logs/testlog.txt FAILED: meson-test /usr/bin/python3 -u /usr/bin/meson test --no-rebuild --print-errorlogs ninja: build stopped: subcommand failed. dh_auto_test: cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test returned exit code 1 debian/rules:8: recipe for target 'build-arch' failed make: *** [build-arch] Error 1 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180427-1233 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 99932 Build-Time: 185 Distribution: bionic Fail-Stage: build Host Architecture: armhf Install-Time: 35 Job: libbiod_0.1.0-5build1.dsc Machine Architecture: arm64 Package: libbiod Package-Time: 222 Source-Version: 0.1.0-5build1 Space: 99932 Status: attempted Version: 0.1.0-5build1 -------------------------------------------------------------------------------- Finished at 20180427-1233 Build needed 00:03:42, 99932k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 Scanning for processes to kill in build PACKAGEBUILD-14586183 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 Stopping target for build PACKAGEBUILD-14586183 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14586183 Removing build PACKAGEBUILD-14586183