https://launchpad.net/ubuntu/+archive/test-rebuild-20180911/+build/15353325 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-041 4.4.0-135-generic #161-Ubuntu SMP Mon Aug 27 10:45:01 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_164 python-lpbuildd_164 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Oct 23:45:04 ntpdate[1801]: adjust time server 10.211.37.1 offset 0.001052 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-15353325 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 Starting target for build PACKAGEBUILD-15353325 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 'deb http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic main' 'deb http://ftpmaster.internal/ubuntu cosmic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-15353325 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 Adding trusted keys to build-PACKAGEBUILD-15353325 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2010-04-12 [SC] DA1A 4A13 543B 4668 53BA F164 EB9B 1D88 86F4 4E2A uid [ unknown] Launchpad OpenJDK builds (all archs) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 Updating target for build PACKAGEBUILD-15353325 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic InRelease [15.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:5 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic/main i386 Packages [3844 B] Get:6 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic/main Translation-en [912 B] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1009 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [513 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/restricted i386 Packages [9564 B] Get:10 http://ftpmaster.internal/ubuntu cosmic/restricted Translation-en [3888 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8779 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5075 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/multiverse i386 Packages [148 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/multiverse Translation-en [113 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-security/universe i386 Packages [7440 B] Get:16 http://ftpmaster.internal/ubuntu cosmic-security/universe Translation-en [2720 B] Fetched 16.1 MB in 7s (2271 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential bzip2 cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 libzstd1 linux-libc-dev make mount multiarch-support ncurses-base ncurses-bin openssl patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux 125 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 96.2 MB of archives. After this operation, 118 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 libc6-dev i386 2.28-0ubuntu1 [2323 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libc-dev-bin i386 2.28-0ubuntu1 [71.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 linux-libc-dev i386 4.18.0-8.9 [1017 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 libc6 i386 2.28-0ubuntu1 [2536 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libc-bin i386 2.28-0ubuntu1 [588 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.2.0-7ubuntu1 [208 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.2.0-7ubuntu1 [30.8 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.2.0-7ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.2.0-7ubuntu1 [48.1 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.2.0-7ubuntu1 [13.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.2.0-7ubuntu1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.2.0-7ubuntu1 [9612 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.2.0-7ubuntu1 [80.7 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.2.0-7ubuntu1 [430 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu6 [60.5 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu3 [647 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu5 [1158 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.4-2 [185 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.4-2 [550 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 findutils i386 4.6.0+git+20180808-2 [307 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 grep i386 3.1-2ubuntu1 [158 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-modules-5.26 all 5.26.2-7 [2764 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libperl5.26 i386 5.26.2-7 [3177 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 perl i386 5.26.2-7 [202 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-base i386 5.26.2-7 [1493 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 bzip2 i386 1.0.6-9 [34.4 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libbz2-1.0 i386 1.0.6-9 [32.9 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libdb5.3 i386 5.3.28+dfsg1-0.1 [737 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre3 i386 2:8.39-11 [229 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 init-system-helpers all 1.54 [38.3 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libudev1 i386 239-7ubuntu9 [58.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libzstd1 i386 1.3.5+dfsg-1ubuntu1 [224 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~rc2ubuntu1 [887 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 debconf all 1.5.69 [121 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-3ubuntu1 [217 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 ubuntu-keyring all 2018.09.18.1 [22.3 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.14-2 [182 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libunistring2 i386 0.9.10-1ubuntu1 [380 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn2-0 i386 2.0.5-1 [49.3 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libgnutls30 i386 3.5.19-1ubuntu1 [657 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~rc2ubuntu1 [1203 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libapparmor1 i386 2.12-4ubuntu8 [32.0 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.4-2ubuntu2 [156 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 systemd i386 239-7ubuntu9 [3068 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 libsystemd0 i386 239-7ubuntu9 [229 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 init i386 1.54 [6380 B] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 systemd-sysv i386 239-7ubuntu9 [9396 B] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.4-2 [9248 B] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.4-2 [11.7 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/universe i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn11 i386 1.33-2.2ubuntu1 [46.6 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.0h-4ubuntu1 [1127 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.0h-4ubuntu1 [542 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 multiarch-support i386 2.28-0ubuntu1 [6916 B] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.31.1-6ubuntu1 [195 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.31.1-6ubuntu1 [3396 B] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.31.1-6ubuntu1 [1986 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.31.1-6ubuntu1 [518 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 libisl19 i386 0.20-2 [649 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-8 i386 8.2.0-7ubuntu1 [7536 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:8.2.0-1ubuntu1 [27.6 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan5 i386 8.2.0-7ubuntu1 [376 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan1 i386 8.2.0-7ubuntu1 [138 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-8-dev i386 8.2.0-7ubuntu1 [2306 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8 i386 8.2.0-7ubuntu1 [8325 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:8.2.0-1ubuntu1 [5268 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-8-dev i386 8.2.0-7ubuntu1 [1581 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-8 i386 8.2.0-7ubuntu1 [8436 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:8.2.0-1ubuntu1 [1616 B] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 make i386 4.2.1-1.2 [169 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu5 [607 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu5 [211 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 patch i386 2.7.6-3 [118 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:119 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-29ubuntu1 [361 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-29ubuntu1 [141 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-29ubuntu1 [47.3 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe i386 g++-7 i386 7.3.0-29ubuntu1 [7818 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-29ubuntu1 [7704 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-29ubuntu1 [1507 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-29ubuntu1 [2395 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-29ubuntu1 [6965 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-29ubuntu1 [18.6 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.4-2 [2700 B] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.6-1 [8032 B] Get:131 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-3ubuntu1 [511 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-3ubuntu1 [130 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-3ubuntu1 [248 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/universe i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:135 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.4-2 [2696 B] Get:136 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:137 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 143 [53.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.2 MB in 4s (23.0 MB/s) (Reading database ... 12632 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 3 23:46:47 UTC 2018. Universal Time is now: Wed Oct 3 23:46:47 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (239-7ubuntu9) ... Setting up gpgconf (2.2.8-3ubuntu1) ... Setting up linux-libc-dev:i386 (4.18.0-8.9) ... Setting up perl-modules-5.26 (5.26.2-7) ... Setting up bzip2 (1.0.6-9) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:i386 (7.3.0-29ubuntu1) ... Setting up binutils-common:i386 (2.31.1-6ubuntu1) ... Setting up libmpx2:i386 (8.2.0-7ubuntu1) ... Setting up patch (2.7.6-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-7) ... Setting up libssl1.1:i386 (1.1.0h-4ubuntu1) ... Setting up openssl (1.1.0h-4ubuntu1) ... Setting up libsqlite3-0:i386 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libc-dev-bin (2.28-0ubuntu1) ... Setting up libcomerr2:i386 (1.44.4-2) ... 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Setting up libgcc-8-dev:i386 (8.2.0-7ubuntu1) ... Setting up binutils (2.31.1-6ubuntu1) ... Setting up libstdc++-8-dev:i386 (8.2.0-7ubuntu1) ... Setting up gcc-7 (7.3.0-29ubuntu1) ... Setting up g++-7 (7.3.0-29ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu5) ... Setting up gcc-8 (8.2.0-7ubuntu1) ... Setting up g++-8 (8.2.0-7ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu5) ... Setting up gcc (4:8.2.0-1ubuntu1) ... Setting up g++ (4:8.2.0-1ubuntu1) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15353325 i386 cosmic -c chroot:build-PACKAGEBUILD-15353325 --arch=i386 --dist=cosmic --nolog 'ball_1.4.3~beta1-4.dsc' Initiating build PACKAGEBUILD-15353325 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-135-generic #161-Ubuntu SMP Mon Aug 27 10:45:01 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-041.buildd +==============================================================================+ | ball 1.4.3~beta1-4 (i386) 03 Oct 2018 23:46 | +==============================================================================+ Package: ball Version: 1.4.3~beta1-4 Source Version: 1.4.3~beta1-4 Distribution: cosmic Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/ball-DKLYUo/ball-1.4.3~beta1' with '<>' I: NOTICE: Log filtering will replace 'build/ball-DKLYUo' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15353325/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ball_1.4.3~beta1-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ueJrbM/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ueJrbM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ueJrbM/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ueJrbM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ueJrbM/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ueJrbM/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (93.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ueJrbM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13722 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-python, qt4-dev-tools, libqt4-dev, libqt4-opengl-dev, python-sip-dev, flex, bison, cmake, libqtwebkit-dev, libfftw3-dev, libeigen3-dev, libgsl0-dev, python-dev, libxrender-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-math-dev, libboost-system-dev, libasio-dev, libboost-regex-dev, libxmu-dev, libglew-dev, libx11-dev, tidy, chrpath, libqt4-dev-bin Filtered Build-Depends: debhelper (>= 10), dh-python, qt4-dev-tools, libqt4-dev, libqt4-opengl-dev, python-sip-dev, flex, bison, cmake, libqtwebkit-dev, libfftw3-dev, libeigen3-dev, libgsl0-dev, python-dev, libxrender-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-math-dev, libboost-system-dev, libasio-dev, libboost-regex-dev, libxmu-dev, libglew-dev, libx11-dev, tidy, chrpath, libqt4-dev-bin dpkg-deb: building package 'sbuild-build-depends-ball-dummy' in '/<>/resolver-JKw8gJ/apt_archive/sbuild-build-depends-ball-dummy.deb'. Ign:1 copy:/<>/resolver-JKw8gJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JKw8gJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JKw8gJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JKw8gJ/apt_archive ./ Sources [347 B] Get:5 copy:/<>/resolver-JKw8gJ/apt_archive ./ Packages [672 B] Fetched 3138 B in 0s (99.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ball build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasio-dev libasn1-8-heimdal libaudio2 libbison-dev libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-math-dev libboost-math1.67-dev libboost-math1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost1.67-dev libbsd0 libcap2-bin libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglew-dev libglew2.0 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libnghttp2-14 libopengl0 liborc-0.4-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit-dev libqtwebkit4 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsm-dev libsm6 libtidy5 libtiff5 libtimedate-perl libtool libuv1 libwayland-client0 libwayland-server0 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-enum34 python-minimal python-sip python-sip-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sip-dev tidy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery lrzip nas libboost-doc libboost1.67-doc libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libeigen3-doc libmrpt-dev libfftw3-doc glew-utils libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libice-doc icu-doc liblcms2-utils pciutils libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-doc unixodbc-dev libicu55 libthai0 qt4-qtconfig lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-enum34-doc python-sip-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc qt4-doc-html Recommended packages: libfl-dev curl | wget | lynx libssl-dev libboost-date-time-dev libpam-cap dbus libarchive-cpio-perl shared-mime-info xdg-user-dirs gstreamer1.0-plugins-base krb5-locales publicsuffix libcups2 qt-at-spi libsasl2-modules libltdl-dev libmail-sendmail-perl qt4-designer qt4-doc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasio-dev libasn1-8-heimdal libaudio2 libbison-dev libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-math-dev libboost-math1.67-dev libboost-math1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost1.67-dev libbsd0 libcap2-bin libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglew-dev libglew2.0 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libnghttp2-14 libopengl0 liborc-0.4-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit-dev libqtwebkit4 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsm-dev libsm6 libtidy5 libtiff5 libtimedate-perl libtool libuv1 libwayland-client0 libwayland-server0 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxt-dev libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-enum34 python-minimal python-sip python-sip-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-ball-dummy sip-dev tidy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 306 newly installed, 0 to remove and 0 not upgraded. Need to get 177 MB of archives. After this operation, 920 MB of additional disk space will be used. 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i386 python3 i386 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1 i386 1.13-3 [50.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-data all 2:1.6.6-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-6 i386 2:1.6.6-1 [594 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.4-2 [1039 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 flex i386 2.6.4-6.2 [307 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg-turbo8 i386 2.0.0-0ubuntu2 [126 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 liblcms2-2 i386 2.9-3 [149 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/universe i386 libmng2 i386 2.0.2-0ubuntu3 [166 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libice6 i386 2:1.0.9-2 [42.6 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libsm6 i386 2:1.2.2-1 [14.8 kB] Get:33 http://ftpmaster.internal/ubuntu 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i386 python i386 2.7.15-3 [7832 B] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.34-2 [197 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.34-2 [78.8 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.34-2 [22.8 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.58.1-2 [1246 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libgirepository-1.0-1 i386 1.58.0-1 [89.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 gir1.2-glib-2.0 i386 1.58.0-1 [132 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap2-bin i386 1:2.25-1.2 [20.8 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libdbus-1-3 i386 1.12.10-1ubuntu2 [189 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libelf1 i386 0.170-0.5 [50.7 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-data all 2.58.1-2 [5476 B] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu1 [659 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 ucf all 3.0038 [50.5 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-7 [51.4 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 iso-codes all 3.79-1 [2565 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-common all 2.4.94-1 [4924 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm2 i386 2.4.94-1 [33.1 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libedit2 i386 3.1-20180525-1 [82.9 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2ubuntu1 [32.5 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2ubuntu1 [89.9 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.3 [9896 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2ubuntu1 [303 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2ubuntu1 [132 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libpsl5 i386 0.20.2-1 [49.9 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.16.1-1.1ubuntu1 [522 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-7 [412 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libbison-dev i386 2:3.0.4.dfsg-1build1 [339 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 bison i386 2:3.0.4.dfsg-1build1 [255 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/universe i386 chrpath i386 0.16-2 [13.4 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake-data all 3.12.1-1 [1419 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive13 i386 3.2.2-5 [336 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 libroken18-heimdal i386 7.5.0+dfsg-2 [44.8 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2 [183 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2 [32.2 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2 [92.6 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 libwind0-heimdal i386 7.5.0+dfsg-2 [48.4 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2 [118 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-2 [231 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-2 [16.3 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-2 [106 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-modules-db i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.6 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-2 i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [52.8 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-2.4-2 i386 2.4.46+dfsg-5ubuntu1 [167 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 libnghttp2-14 i386 1.32.1-1 [82.8 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 libcurl4 i386 7.61.0-1ubuntu1 [240 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 librhash0 i386 1.3.6-2 [90.7 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 libuv1 i386 1.22.0-3ubuntu1 [73.7 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake i386 3.12.1-1 [3654 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-4 [196 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.63-1 [84.8 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 dwz i386 0.12-2 [80.4 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-7 [905 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-distutils all 3.6.6-1 [141 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-python all 3.20180723 [90.2 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 libfreetype6 i386 2.8.1-2ubuntu2 [351 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 libfontconfig1 i386 2.13.0-5ubuntu3 [122 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig i386 2.13.0-5ubuntu3 [170 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 libgraphite2-3 i386 1.3.12-1 [76.9 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz0b i386 1.8.8-2 [278 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main i386 gir1.2-harfbuzz-0.0 i386 1.8.8-2 [19.3 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main i386 icu-devtools i386 60.2-6ubuntu1 [189 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe i386 libasio-dev all 1:1.10.8-1 [240 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/universe i386 libaudio2 i386 1.9.4-6 [54.0 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost1.67-dev i386 1.67.0-7 [8364 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-atomic1.67.0 i386 1.67.0-7 [201 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-atomic1.67-dev i386 1.67.0-7 [199 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-system1.67.0 i386 1.67.0-7 [205 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-chrono1.67.0 i386 1.67.0-7 [209 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-chrono1.67-dev i386 1.67.0-7 [211 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-date-time1.67.0 i386 1.67.0-7 [214 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-serialization1.67.0 i386 1.67.0-7 [299 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-serialization1.67-dev i386 1.67.0-7 [340 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-date-time1.67-dev i386 1.67.0-7 [222 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-dev i386 1.67.0.0ubuntu1 [3136 B] Get:136 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-regex1.67.0 i386 1.67.0-7 [479 kB] Get:137 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-le-hb0 i386 1.0.3+git161113-5 [15.7 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/main i386 libiculx60 i386 60.2-6ubuntu1 [19.7 kB] Get:139 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-icu0 i386 1.8.8-2 [6132 B] Get:140 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-gobject0 i386 1.8.8-2 [12.7 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-bin i386 2.58.1-2 [75.2 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-dev-bin i386 2.58.1-2 [104 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre16-3 i386 2:8.39-11 [148 kB] Get:144 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre32-3 i386 2:8.39-11 [140 kB] Get:145 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcrecpp0v5 i386 2:8.39-11 [16.7 kB] Get:146 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre3-dev i386 2:8.39-11 [546 kB] Get:147 http://ftpmaster.internal/ubuntu cosmic/main i386 pkg-config i386 0.29.1-0ubuntu2 [45.8 kB] Get:148 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:149 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-dev i386 2.58.1-2 [1510 kB] Get:150 http://ftpmaster.internal/ubuntu cosmic/main i386 libgraphite2-dev i386 1.3.12-1 [14.7 kB] Get:151 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-dev i386 1.8.8-2 [365 kB] Get:152 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-le-hb-dev i386 1.0.3+git161113-5 [31.2 kB] Get:153 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-dev i386 60.2-6ubuntu1 [9073 kB] Get:154 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-regex1.67-dev i386 1.67.0-7 [534 kB] Get:155 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-iostreams1.67.0 i386 1.67.0-7 [225 kB] Get:156 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-iostreams1.67-dev i386 1.67.0-7 [231 kB] Get:157 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-iostreams-dev i386 1.67.0.0ubuntu1 [2920 B] Get:158 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-math1.67.0 i386 1.67.0-7 [409 kB] Get:159 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-math1.67-dev i386 1.67.0-7 [684 kB] Get:160 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-math-dev i386 1.67.0.0ubuntu1 [3124 B] Get:161 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-regex-dev i386 1.67.0.0ubuntu1 [3192 B] Get:162 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-system1.67-dev i386 1.67.0-7 [206 kB] Get:163 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-system-dev i386 1.67.0.0ubuntu1 [3080 B] Get:164 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-thread1.67.0 i386 1.67.0-7 [243 kB] Get:165 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-thread1.67-dev i386 1.67.0-7 [246 kB] Get:166 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-thread-dev i386 1.67.0.0ubuntu1 [2964 B] Get:167 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-amdgpu1 i386 2.4.94-1 [20.0 kB] Get:168 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:169 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-intel1 i386 2.4.94-1 [63.3 kB] Get:170 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-radeon1 i386 2.4.94-1 [22.8 kB] Get:171 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-nouveau2 i386 2.4.94-1 [18.2 kB] Get:172 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-dev i386 2.4.94-1 [255 kB] Get:173 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-server0 i386 1.16.0-1ubuntu1 [30.8 kB] Get:174 http://ftpmaster.internal/ubuntu cosmic/main i386 libgbm1 i386 18.2.1-1ubuntu1 [26.0 kB] Get:175 http://ftpmaster.internal/ubuntu cosmic/main i386 libglapi-mesa i386 18.2.1-1ubuntu1 [24.2 kB] Get:176 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-client0 i386 1.16.0-1ubuntu1 [24.1 kB] Get:177 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-xcb1 i386 2:1.6.6-1 [9252 B] Get:178 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0 i386 1.13-3 [7308 B] Get:179 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-0 i386 1.13-3 [6972 B] Get:180 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present0 i386 1.13-3 [5748 B] Get:181 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync1 i386 1.13-3 [9248 B] Get:182 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0 i386 1.13-3 [9804 B] Get:183 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence1 i386 1.3-1 [5180 B] Get:184 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl-mesa0 i386 18.2.1-1ubuntu1 [94.8 kB] Get:185 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1-dev i386 2.2.6-1 [137 kB] Get:186 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-double3 i386 3.3.8-2 [632 kB] Get:187 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-long3 i386 3.3.8-2 [319 kB] Get:188 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-quad3 i386 3.3.8-2 [1756 kB] Get:189 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-single3 i386 3.3.8-2 [645 kB] Get:190 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-bin i386 3.3.8-2 [34.7 kB] Get:191 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-dev i386 3.3.8-2 [3150 kB] Get:192 http://ftpmaster.internal/ubuntu cosmic/main i386 libllvm7 i386 1:7-3 [17.6 MB] Get:193 http://ftpmaster.internal/ubuntu cosmic/main i386 libsensors4 i386 1:3.4.0-4 [29.3 kB] Get:194 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dri i386 18.2.1-1ubuntu1 [6949 kB] Get:195 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd0 i386 1.1.0-1 [41.0 kB] Get:196 http://ftpmaster.internal/ubuntu cosmic/main i386 libgles1 i386 1.1.0-1 [12.1 kB] Get:197 http://ftpmaster.internal/ubuntu cosmic/main i386 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:198 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-dev all 2018.4-4 [251 kB] Get:199 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-core-dev all 2018.4-4 [2620 B] Get:200 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau-dev i386 1:1.0.8-1 [10.2 kB] Get:201 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp-dev i386 1:1.1.2-3 [24.9 kB] Get:202 http://ftpmaster.internal/ubuntu cosmic/main i386 xtrans-dev all 1.3.5-1 [70.5 kB] Get:203 http://ftpmaster.internal/ubuntu cosmic/main i386 libpthread-stubs0-dev i386 0.3-4 [4054 B] Get:204 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1-dev i386 1.13-3 [85.4 kB] Get:205 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-dev i386 2:1.6.6-1 [671 kB] Get:206 http://ftpmaster.internal/ubuntu cosmic/main i386 mesa-common-dev i386 18.2.1-1ubuntu1 [551 kB] Get:207 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-core-dev i386 1.1.0-1 [12.6 kB] Get:208 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl1 i386 1.1.0-1 [33.5 kB] Get:209 http://ftpmaster.internal/ubuntu cosmic/main i386 libgles2 i386 1.1.0-1 [17.1 kB] Get:210 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0 i386 1.13-3 [23.9 kB] Get:211 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:212 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:213 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx-mesa0 i386 18.2.1-1ubuntu1 [143 kB] Get:214 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx0 i386 1.1.0-1 [29.5 kB] Get:215 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1 i386 1.1.0-1 [80.9 kB] Get:216 http://ftpmaster.internal/ubuntu cosmic/main i386 libopengl0 i386 1.1.0-1 [29.3 kB] Get:217 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-dev i386 1.1.0-1 [3392 B] Get:218 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-xcb-dev i386 2:1.6.6-1 [9760 B] Get:219 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-dev i386 1.13-3 [7664 B] Get:220 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0 i386 1.13-3 [17.9 kB] Get:221 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0 i386 1.13-3 [15.9 kB] Get:222 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0-dev i386 1.13-3 [19.2 kB] Get:223 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0-dev i386 1.13-3 [21.7 kB] Get:224 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0 i386 1.13-3 [6152 B] Get:225 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0-dev i386 1.13-3 [7352 B] Get:226 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0-dev i386 1.13-3 [12.1 kB] Get:227 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync-dev i386 1.13-3 [11.1 kB] Get:228 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present-dev i386 1.13-3 [7172 B] Get:229 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence-dev i386 1.3-1 [3896 B] Get:230 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0-dev i386 1.13-3 [8792 B] Get:231 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0-dev i386 1.13-3 [29.3 kB] Get:232 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:233 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes-dev i386 1:5.0.3-1 [11.2 kB] Get:234 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:235 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage-dev i386 1:1.1.4-3 [5174 B] Get:236 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xext-dev all 2018.4-4 [2620 B] Get:237 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext-dev i386 2:1.3.3-1 [82.8 kB] Get:238 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:239 http://ftpmaster.internal/ubuntu cosmic/main i386 libxxf86vm-dev i386 1:1.1.4-1 [13.9 kB] Get:240 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dev i386 18.2.1-1ubuntu1 [4420 B] Get:241 http://ftpmaster.internal/ubuntu cosmic/universe i386 libglew2.0 i386 2.0.0-6 [131 kB] Get:242 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa i386 9.0.0-2.1build1 [178 kB] Get:243 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa-dev i386 9.0.0-2.1build1 [204 kB] Get:244 http://ftpmaster.internal/ubuntu cosmic/universe i386 libglew-dev i386 2.0.0-6 [120 kB] Get:245 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgslcblas0 i386 2.5+dfsg-5 [82.0 kB] Get:246 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl23 i386 2.5+dfsg-5 [829 kB] Get:247 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl-dev i386 2.5+dfsg-5 [1076 kB] Get:248 http://ftpmaster.internal/ubuntu cosmic/main i386 libgstreamer1.0-0 i386 1.14.2-2 [892 kB] Get:249 http://ftpmaster.internal/ubuntu cosmic/main i386 liborc-0.4-0 i386 1:0.4.28-2 [148 kB] Get:250 http://ftpmaster.internal/ubuntu cosmic/main i386 libgstreamer-plugins-base1.0-0 i386 1.14.2-1ubuntu1 [703 kB] Get:251 http://ftpmaster.internal/ubuntu cosmic/main i386 libice-dev i386 2:1.0.9-2 [46.8 kB] Get:252 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7 i386 2.7.15-4ubuntu1 [1055 kB] Get:253 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-dev i386 2.7.15-4ubuntu1 [31.3 MB] Get:254 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2-dev i386 2.7.15-3 [7800 B] Get:255 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython-dev i386 2.7.15-3 [5896 B] Get:256 http://ftpmaster.internal/ubuntu cosmic/universe i386 qtcore4-l10n all 4:4.8.7+dfsg-7ubuntu1 [617 kB] Get:257 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtcore4 i386 4:4.8.7+dfsg-7ubuntu1 [1616 kB] Get:258 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-xml i386 4:4.8.7+dfsg-7ubuntu1 [101 kB] Get:259 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtdbus4 i386 4:4.8.7+dfsg-7ubuntu1 [194 kB] Get:260 http://ftpmaster.internal/ubuntu cosmic/main i386 qtchooser i386 64-ga1b6736-5 [25.6 kB] Get:261 http://ftpmaster.internal/ubuntu cosmic/universe i386 qdbus i386 4:4.8.7+dfsg-7ubuntu1 [30.5 kB] Get:262 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dbus i386 4:4.8.7+dfsg-7ubuntu1 [6436 B] Get:263 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-network i386 4:4.8.7+dfsg-7ubuntu1 [592 kB] Get:264 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-script i386 4:4.8.7+dfsg-7ubuntu1 [889 kB] Get:265 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-sql i386 4:4.8.7+dfsg-7ubuntu1 [105 kB] Get:266 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-xmlpatterns i386 4:4.8.7+dfsg-7ubuntu1 [1128 kB] Get:267 http://ftpmaster.internal/ubuntu cosmic/main i386 libjbig0 i386 2.1-3.1build1 [27.3 kB] Get:268 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiff5 i386 4.0.9-6 [163 kB] Get:269 http://ftpmaster.internal/ubuntu cosmic/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:270 http://ftpmaster.internal/ubuntu cosmic/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:271 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtgui4 i386 4:4.8.7+dfsg-7ubuntu1 [4353 kB] Get:272 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-declarative i386 4:4.8.7+dfsg-7ubuntu1 [1149 kB] Get:273 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-designer i386 4:4.8.7+dfsg-7ubuntu1 [3716 kB] Get:274 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-qt3support i386 4:4.8.7+dfsg-7ubuntu1 [1116 kB] Get:275 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dev-bin i386 4:4.8.7+dfsg-7ubuntu1 [1691 kB] Get:276 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-help i386 4:4.8.7+dfsg-7ubuntu1 [216 kB] Get:277 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-scripttools i386 4:4.8.7+dfsg-7ubuntu1 [237 kB] Get:278 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-svg i386 4:4.8.7+dfsg-7ubuntu1 [145 kB] Get:279 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-test i386 4:4.8.7+dfsg-7ubuntu1 [63.6 kB] Get:280 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-linguist-tools i386 4:4.8.7+dfsg-7ubuntu1 [884 kB] Get:281 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-qmake i386 4:4.8.7+dfsg-7ubuntu1 [1319 kB] Get:282 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dev i386 4:4.8.7+dfsg-7ubuntu1 [857 kB] Get:283 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-opengl i386 4:4.8.7+dfsg-7ubuntu1 [319 kB] Get:284 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-opengl-dev i386 4:4.8.7+dfsg-7ubuntu1 [22.8 kB] Get:285 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-sql-sqlite i386 4:4.8.7+dfsg-7ubuntu1 [24.5 kB] Get:286 http://ftpmaster.internal/ubuntu cosmic/main i386 libxslt1.1 i386 1.1.32-2 [160 kB] Get:287 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtwebkit4 i386 2.3.2-0ubuntu13 [9907 kB] Get:288 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtwebkit-dev i386 2.3.2-0ubuntu13 [70.2 kB] Get:289 http://ftpmaster.internal/ubuntu cosmic/main i386 libsm-dev i386 2:1.2.2-1 [15.1 kB] Get:290 http://ftpmaster.internal/ubuntu cosmic/main i386 libtidy5 i386 1:5.2.0-2 [165 kB] Get:291 http://ftpmaster.internal/ubuntu cosmic/main i386 libxt-dev i386 1:1.1.5-1 [393 kB] Get:292 http://ftpmaster.internal/ubuntu cosmic/main i386 libxmu6 i386 2:1.1.2-2 [48.4 kB] Get:293 http://ftpmaster.internal/ubuntu cosmic/main i386 libxmu-headers all 2:1.1.2-2 [54.3 kB] Get:294 http://ftpmaster.internal/ubuntu cosmic/main i386 libxmu-dev i386 2:1.1.2-2 [49.6 kB] Get:295 http://ftpmaster.internal/ubuntu cosmic/main i386 libxrender-dev i386 1:0.9.10-1 [25.1 kB] Get:296 http://ftpmaster.internal/ubuntu cosmic/main i386 libxtst6 i386 2:1.2.3-1 [13.4 kB] Get:297 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7-dev i386 2.7.15-4ubuntu1 [278 kB] Get:298 http://ftpmaster.internal/ubuntu cosmic/main i386 python2-dev i386 2.7.15-3 [1236 B] Get:299 http://ftpmaster.internal/ubuntu cosmic/main i386 python-dev i386 2.7.15-3 [1216 B] Get:300 http://ftpmaster.internal/ubuntu cosmic/main i386 python-enum34 all 1.1.6-2 [34.8 kB] Get:301 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-sip i386 4.19.12+dfsg-1 [77.1 kB] Get:302 http://ftpmaster.internal/ubuntu cosmic/universe i386 sip-dev i386 4.19.12+dfsg-1 [159 kB] Get:303 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-sip-dev i386 4.19.12+dfsg-1 [21.7 kB] Get:304 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-dev-tools i386 4:4.8.7+dfsg-7ubuntu1 [3992 kB] Get:305 http://ftpmaster.internal/ubuntu cosmic/universe i386 tidy i386 1:5.2.0-2 [26.0 kB] Get:306 http://ftpmaster.internal/ubuntu cosmic/universe i386 libeigen3-dev all 3.3.4-4build1 [810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 177 MB in 9s (19.1 MB/s) Selecting previously unselected package libpython3.6-minimal:i386. 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Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:i386 (1:5.34-2) ... Setting up libdrm-common (2.4.94-1) ... Setting up libgraphite2-3:i386 (1.3.12-1) ... Setting up librhash0:i386 (1.3.6-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libxslt1.1:i386 (1.1.32-2) ... Setting up libfftw3-quad3:i386 (3.3.8-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libx11-xcb1:i386 (2:1.6.6-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up gir1.2-glib-2.0:i386 (1.58.0-1) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libglib2.0-data (2.58.1-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libqtcore4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:i386 (1.67.0-7) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-2) ... Processing triggers for systemd (239-7ubuntu9) ... Setting up libbison-dev:i386 (2:3.0.4.dfsg-1build1) ... Setting up libexpat1-dev:i386 (2.2.6-1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libfftw3-single3:i386 (3.3.8-2) ... Setting up libsensors4:i386 (1:3.4.0-4) ... Setting up libgles2:i386 (1.1.0-1) ... Setting up libpcrecpp0v5:i386 (2:8.39-11) ... Setting up libpcre32-3:i386 (2:8.39-11) ... Setting up libboost-serialization1.67.0:i386 (1.67.0-7) ... Setting up libasio-dev (1:1.10.8-1) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up liborc-0.4-0:i386 (1:0.4.28-2) ... Setting up libpcre16-3:i386 (2:8.39-11) ... Setting up libboost-dev:i386 (1.67.0.0ubuntu1) ... Setting up bison (2:3.0.4.dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libkeyutils1:i386 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libgslcblas0:i386 (2.5+dfsg-5) ... Setting up libqt4-test:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-system1.67.0:i386 (1.67.0-7) ... Setting up libfftw3-long3:i386 (3.3.8-2) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libglvnd-core-dev:i386 (1.1.0-1) ... Setting up libgraphite2-dev:i386 (1.3.12-1) ... Setting up libboost-regex1.67.0:i386 (1.67.0-7) ... Setting up sip-dev (4.19.12+dfsg-1) ... Setting up libx11-data (2:1.6.6-1) ... Setting up libpython2.7-stdlib:i386 (2.7.15-4ubuntu1) ... Setting up libqt4-xml:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up qt4-linguist-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-7) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libdbus-1-3:i386 (1.12.10-1ubuntu2) ... Setting up liblzo2-2:i386 (2.10-0.1) ... Setting up libwayland-server0:i386 (1.16.0-1ubuntu1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libpython3.6-stdlib:i386 (3.6.6-4) ... Setting up libk5crypto3:i386 (1.16-2ubuntu1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libpcre3-dev:i386 (2:8.39-11) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up python3.6 (3.6.6-4) ... Setting up libgstreamer1.0-0:i386 (1.14.2-2) ... Setcap worked! gst-ptp-helper is not suid! Setting up x11proto-core-dev (2018.4-4) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up libgsl23:i386 (2.5+dfsg-5) ... Setting up gettext (0.19.8.1-7) ... Setting up libboost-serialization1.67-dev:i386 (1.67.0-7) ... Setting up flex (2.6.4-6.2) ... Setting up libboost-math1.67-dev:i386 (1.67.0-7) ... Setting up libgsl-dev (2.5+dfsg-5) ... Setting up libarchive13:i386 (3.2.2-5) ... Setting up libeigen3-dev (3.3.4-4build1) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libboost-thread1.67.0:i386 (1.67.0-7) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu1) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2) ... Setting up python2.7 (2.7.15-4ubuntu1) ... Setting up libharfbuzz0b:i386 (1.8.8-2) ... Setting up libtiff5:i386 (4.0.9-6) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:i386 (1:1.0.8-1) ... Setting up autoconf (2.69-11) ... Setting up libqt4-sql:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up file (1:5.34-2) ... Setting up libmng2:i386 (2.0.2-0ubuntu3) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libdrm2:i386 (2.4.94-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-atomic1.67-dev:i386 (1.67.0-7) ... Setting up libdrm-intel1:i386 (2.4.94-1) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up gir1.2-harfbuzz-0.0:i386 (1.8.8-2) ... Setting up libboost-chrono1.67.0:i386 (1.67.0-7) ... Setting up libpython2.7:i386 (2.7.15-4ubuntu1) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up automake (1:1.16.1-1.1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libboost-system1.67-dev:i386 (1.67.0-7) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:i386 (2.7.15-3) ... Setting up libkrb5-3:i386 (1.16-2ubuntu1) ... Setting up libpython2.7-dev:i386 (2.7.15-4ubuntu1) ... Setting up libboost-chrono1.67-dev:i386 (1.67.0-7) ... Setting up libboost-date-time1.67-dev:i386 (1.67.0-7) ... Setting up libdrm-radeon1:i386 (2.4.94-1) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libdrm-nouveau2:i386 (2.4.94-1) ... Setting up libboost-math-dev:i386 (1.67.0.0ubuntu1) ... Setting up python2.7-dev (2.7.15-4ubuntu1) ... Setting up libqtdbus4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb1:i386 (1.13-3) ... Setting up libharfbuzz-gobject0:i386 (1.8.8-2) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libtool (2.4.6-4) ... Setting up libpython3-stdlib:i386 (3.6.6-1) ... Setting up libxcb-present0:i386 (1.13-3) ... Setting up libgstreamer-plugins-base1.0-0:i386 (1.14.2-1ubuntu1) ... Setting up libfontconfig1:i386 (2.13.0-5ubuntu3) ... Setting up libxcb-dri2-0:i386 (1.13-3) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libxcb-dri3-0:i386 (1.13-3) ... Setting up libxcb-glx0:i386 (1.13-3) ... Setting up libxcb-randr0:i386 (1.13-3) ... Setting up libxcb-xfixes0:i386 (1.13-3) ... Setting up libxcb-render0:i386 (1.13-3) ... Setting up libharfbuzz-icu0:i386 (1.8.8-2) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up libdrm-amdgpu1:i386 (2.4.94-1) ... Setting up libboost-thread1.67-dev:i386 (1.67.0-7) ... Setting up libqt4-script:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-system-dev:i386 (1.67.0.0ubuntu1) ... Setting up libdrm-dev:i386 (2.4.94-1) ... Setting up libicu-le-hb0:i386 (1.0.3+git161113-5) ... Setting up libgbm1:i386 (18.2.1-1ubuntu1) ... Setting up libx11-6:i386 (2:1.6.6-1) ... Setting up libgl1-mesa-dri:i386 (18.2.1-1ubuntu1) ... Setting up libqt4-sql-sqlite:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python2 (2.7.15-3) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb-sync1:i386 (1.13-3) ... Setting up libgssapi-krb5-2:i386 (1.16-2ubuntu1) ... Setting up libpython2-dev:i386 (2.7.15-3) ... Setting up libpython-stdlib:i386 (2.7.15-3) ... Setting up libice-dev:i386 (2:1.0.9-2) ... Setting up python2-dev (2.7.15-3) ... Setting up libiculx60:i386 (60.2-6ubuntu1) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxcb-shape0:i386 (1.13-3) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libxcb1-dev:i386 (1.13-3) ... Setting up libxcb-glx0-dev:i386 (1.13-3) ... Setting up libegl-mesa0:i386 (18.2.1-1ubuntu1) ... Setting up libx11-dev:i386 (2:1.6.6-1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libqt4-dbus:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up libqt4-network:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libxcb-sync-dev:i386 (1.13-3) ... Setting up libaudio2:i386 (1.9.4-6) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up libx11-xcb-dev:i386 (2:1.6.6-1) ... Setting up libpython-dev:i386 (2.7.15-3) ... Setting up libsm-dev:i386 (2:1.2.2-1) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up mesa-common-dev:i386 (18.2.1-1ubuntu1) ... Setting up libboost-thread-dev:i386 (1.67.0.0ubuntu1) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up python-dev (2.7.15-3) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up libxrender-dev:i386 (1:0.9.10-1) ... Setting up libqt4-xmlpatterns:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libglib2.0-dev:i386 (2.58.1-2) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up libxmu6:i386 (2:1.1.2-2) ... Setting up libxcb-dri2-0-dev:i386 (1.13-3) ... Setting up libxcb-render0-dev:i386 (1.13-3) ... Setting up libegl1:i386 (1.1.0-1) ... Setting up libxcb-dri3-dev:i386 (1.13-3) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Setting up libxext-dev:i386 (2:1.3.3-1) ... Setting up python-enum34 (1.1.6-2) ... Setting up libxcb-shape0-dev:i386 (1.13-3) ... Setting up libxxf86vm1:i386 (1:1.1.4-1) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up dh-python (3.20180723) ... Setting up libglx-mesa0:i386 (18.2.1-1ubuntu1) ... Setting up python-sip (4.19.12+dfsg-1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libxcb-randr0-dev:i386 (1.13-3) ... Setting up libxt-dev:i386 (1:1.1.5-1) ... Setting up libxmu-dev:i386 (2:1.1.2-2) ... Setting up libxcb-xfixes0-dev:i386 (1.13-3) ... Setting up libcurl4:i386 (7.61.0-1ubuntu1) ... Setting up libxdamage-dev:i386 (1:1.1.4-3) ... Setting up python-sip-dev (4.19.12+dfsg-1) ... Setting up libxcb-present-dev:i386 (1.13-3) ... Setting up cmake (3.12.1-1) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up libglew2.0:i386 (2.0.0-6) ... Setting up libglu1-mesa:i386 (9.0.0-2.1build1) ... Setting up libglvnd-dev:i386 (1.1.0-1) ... Setting up libgl1-mesa-dev:i386 (18.2.1-1ubuntu1) ... Setting up libglu1-mesa-dev:i386 (9.0.0-2.1build1) ... Setting up libglew-dev:i386 (2.0.0-6) ... Setting up libqtgui4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up libqt4-designer:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-help:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up libharfbuzz-dev:i386 (1.8.8-2) ... Setting up libqt4-svg:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-scripttools:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libqt4-opengl:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-declarative:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libicu-le-hb-dev:i386 (1.0.3+git161113-5) ... Setting up libqt4-qt3support:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-regex1.67-dev:i386 (1.67.0-7) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu1) ... Setting up libboost-regex-dev:i386 (1.67.0.0ubuntu1) ... Setting up qt4-dev-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqtwebkit4:i386 (2.3.2-0ubuntu13) ... Setting up libboost-iostreams1.67-dev:i386 (1.67.0-7) ... Setting up libboost-iostreams-dev:i386 (1.67.0.0ubuntu1) ... Setting up libqtwebkit-dev (2.3.2-0ubuntu13) ... Setting up sbuild-build-depends-ball-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-135-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-6ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-7_7.3.0-29ubuntu1 g++-8_8.2.0-7ubuntu1 gcc-7_7.3.0-29ubuntu1 gcc-8_8.2.0-7ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-7-dev_7.3.0-29ubuntu1 libstdc++-8-dev_8.2.0-7ubuntu1 libstdc++6_8.2.0-7ubuntu1 linux-libc-dev_4.18.0-8.9 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~rc2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-1.1ubuntu1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1ubuntu6 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-6ubuntu1 binutils-common_2.31.1-6ubuntu1 binutils-i686-linux-gnu_2.31.1-6ubuntu1 bison_2:3.0.4.dfsg-1build1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 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x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 21 14:11:15 2017 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ball_1.4.3~beta1-4.dsc dpkg-source: info: extracting ball in ball-1.4.3~beta1 dpkg-source: info: unpacking ball_1.4.3~beta1.orig.tar.gz dpkg-source: info: unpacking ball_1.4.3~beta1-4.debian.tar.xz dpkg-source: info: applying 0001-missingSigned.patch dpkg-source: info: applying fix-compilation-of-BinaryFingerprintMethods_test.patch dpkg-source: info: applying fix-string-gcc5.patch dpkg-source: info: applying fix-poseClustering-with-boost-1.60.patch dpkg-source: info: applying nopsboxit.patch dpkg-source: info: applying link_against_x11.patch dpkg-source: info: applying findsip.patch dpkg-source: info: applying disable-assign-positions-from-template.patch dpkg-source: info: applying fix-FingerprintSimilarityClustering.patch dpkg-source: info: applying fix-Python-bindings-for-Box.patch dpkg-source: info: applying remove_Socket_test.patch dpkg-source: info: applying modify-rtti-isKindOf-to-take-pointer.patch dpkg-source: info: applying fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch dpkg-source: info: applying fix-XDRPersistenceManager_test.patch dpkg-source: info: applying disable-AmberFF_test.patch dpkg-source: info: applying gcc7_458598c...a0eb440.diff dpkg-source: info: applying desperately_remove_failing_tests.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15353325 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15353325 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15353325 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ball dpkg-buildpackage: info: source version 1.4.3~beta1-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ball-1.4.3~beta1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean debian/rules:47: Building for i386 which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. dh clean --buildsystem=cmake --builddirectory=build --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' debian/rules:47: Building for i386 which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. [ -d source ] && cd source ; \ if [ -f Makefile ] ; \ then \ make clean ; \ cd PYTHON/EXTENSIONS; \ make clean; \ rm -rf ../lib/Linux*; \ rm -rf ../doc/doxygen/latex/*; \ rm -f /<>/source/config.status 2>/dev/null; \ fi rm -f data/BALLView/translations/BALLView.de_DE.qm rm -f data/BALLView/translations/BALLView.zh_TW.qm rm -f doc/TUTORIAL/*.aux rm -rf build find . -name "*.o" | xargs -r rm find . -type l | xargs -r rm find doc/TUTORIAL/ -name "tutorial.*" | egrep -v ".(tex|bib)$" |xargs -r rm rm -f include/BALL/BALL.doc # find . -name "*.doc" -delete # Remove self-create UI header file rm -f include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h \ include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h \ include/BALL/VIEW/UIC/ui_atomOverview.h make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=cmake -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libball1.4-data.substvars debian/libball1.4.substvars debian/libball1.4-dev.substvars debian/libballview1.4.substvars debian/libballview1.4-dev.substvars debian/python-ball.substvars debian/python-ballview.substvars debian/ballview.substvars debian/libball1.4-doc.substvars debian/files rm -fr -- debian/libball1.4-data/ debian/tmp/ debian/libball1.4/ debian/libball1.4-dev/ debian/libballview1.4/ debian/libballview1.4-dev/ debian/python-ball/ debian/python-ballview/ debian/ballview/ debian/libball1.4-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch debian/rules:47: Building for i386 which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. dh build-arch --buildsystem=cmake --builddirectory=build --with python2 dh_update_autotools_config -a -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -a -O--buildsystem=cmake -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' debian/rules:47: Building for i386 which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. mkdir -p build cd build && LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" \ cmake .. -DCMAKE_SOURCE_DIR=/<> -DCMAKE_INSTALL_PREFIX=./usr -DBALL_PATH=/usr -DBALL_DATA_PATH=/usr/share/BALL-1.4/data -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- g++ requires -std=c++0x for tr1 -- Compiler checks for conversion: OFF -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of size_t -- Check size of size_t - done -- Check size of void* -- Check size of void* - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include process.h -- Looking for C++ include process.h - not found -- Looking for C++ include time.h -- Looking for C++ include time.h - found -- Looking for C++ include limits.h -- Looking for C++ include limits.h - found -- Looking for C++ include dirent.h -- Looking for C++ include dirent.h - found -- Looking for C++ include direct.h -- Looking for C++ include direct.h - not found -- Looking for C++ include pwd.h -- Looking for C++ include pwd.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for C++ include sys/ioctl.h -- Looking for C++ include sys/ioctl.h - found -- Looking for C++ include sys/time.h -- Looking for C++ include sys/time.h - found -- Looking for C++ include sys/stat.h -- Looking for C++ include sys/stat.h - found -- Looking for C++ include sys/times.h -- Looking for C++ include sys/times.h - found -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include sys/param.h -- Looking for C++ include sys/param.h - found -- Looking for C++ include sys/socket.h -- Looking for C++ include sys/socket.h - found -- Looking for C++ include sys/sysinfo.h -- Looking for C++ include sys/sysinfo.h - found -- Do we need float.h for limits.h? -- Looking for FLT_MIN -- Looking for FLT_MIN - not found -- Looking for FLT_MIN -- Looking for FLT_MIN - found -- Performing Test BALL_HAS_NUMERIC_LIMITS -- Performing Test BALL_HAS_NUMERIC_LIMITS - Success -- Looking for C++ include regex.h -- Looking for C++ include regex.h - found -- Looking for C++ include netinet/in.h -- Looking for C++ include netinet/in.h - found -- Looking for C++ include netdb.h -- Looking for C++ include netdb.h - found -- Performing Test BALL_HAS_MODE_T -- Performing Test BALL_HAS_MODE_T - Success -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include ieeefp.h -- Looking for C++ include ieeefp.h - not found -- Looking for C++ include values.h -- Looking for C++ include values.h - found -- Looking for kill -- Looking for kill - found -- Looking for sysconf -- Looking for sysconf - found -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS - Success -- Performing Test BALL_HAS_ANSI_IOSTREAM -- Performing Test BALL_HAS_ANSI_IOSTREAM - Success -- Performing Test BALL_HAS_INLINE_TPL_ARGS -- Performing Test BALL_HAS_INLINE_TPL_ARGS - Success -- Checking for gnu slist -- Performing Test BALL_HAS_GNU_SLIST -- Performing Test BALL_HAS_GNU_SLIST - Success -- Checking for gnu slist - Found -- Checking for C++11 initializer lists -- Performing Test BALL_HAS_INITIALIZER_LISTS -- Performing Test BALL_HAS_INITIALIZER_LISTS - Success -- Checking for C++11 initializer lists - Found -- Performing Test BALL_HAS_EXTERN_TEMPLATES -- Performing Test BALL_HAS_EXTERN_TEMPLATES - Success -- Performing Test BALL_HAS_RVALUE_REFERENCES -- Performing Test BALL_HAS_RVALUE_REFERENCES - Success -- Performing Test BALL_STD_STRING_HAS_RVALUE_REFERENCES -- Performing Test BALL_STD_STRING_HAS_RVALUE_REFERENCES - Success -- Performing Test BALL_HAS_NOEXCEPT -- Performing Test BALL_HAS_NOEXCEPT - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATORS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATORS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT - Failed -- Performing Test BALL_HAS_STD_STRING_SHRINK_TO_FIT -- Performing Test BALL_HAS_STD_STRING_SHRINK_TO_FIT - Success -- Performing Test BALL_HAS_STD_STRING_FRONT_BACK -- Performing Test BALL_HAS_STD_STRING_FRONT_BACK - Success -- Performing Test BALL_HAS_STD_STRING_POP_BACK -- Performing Test BALL_HAS_STD_STRING_POP_BACK - Success -- Looking for vsnprintf -- Looking for vsnprintf - found -- [GCC only] STL debug mode: OFF -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Checking for yylex_destroy support in flex -- Checking for yylex_destroy support in flex - Not found -- Looking for C++ include rpc/types.h -- Looking for C++ include rpc/types.h - found -- Performing Test XDR_HAS_RPC_XDR_H -- Performing Test XDR_HAS_RPC_XDR_H - Success -- Looking for xdr_int -- Looking for xdr_int - found -- Looking for xdr_u_hyper -- Looking for xdr_u_hyper - found -- Looking for 64-bit XDR type (for xdr_u_hyper) -- Performing Test XDR_64Bit_Type -- Performing Test XDR_64Bit_Type - Success -- Checking for xdrrec_create signature -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- system -- thread -- iostreams -- regex -- date_time -- serialization -- chrono -- atomic -- /usr/include -- Performing Test BALL_HAS_BOOST_UNORDERED_MAP -- Performing Test BALL_HAS_BOOST_UNORDERED_MAP - Success -- Using GSL from /usr -- Checking for libfftw. -- FFTW: Found double precision -- FFTW: Found float precision -- Could NOT find LPSolve (missing: LPSOLVE_LIBRARIES LPSOLVE_INCLUDE_PATH LPSOLVE_LINKS) -- Looking for math.h -- Looking for math.h - found -- Could NOT find LibSVM (missing: LIBSVM_LIBRARY LIBSVM_INCLUDE_DIR LIBSVM_INCLUDE_DIRS LIBSVM_ROOT_DIR) -- [Warning] FindTBB.cmake: The use of TBB_ARCHITECTURE and TBB_COMPILER is deprecated and may not be supported in future versions. Please set (using tbbvars.[bat|csh|sh]). ERROR: Intel TBB NOT found! -- Looked for Threading Building Blocks in /opt/intel/tbb;/usr/local/include;/usr/include;/usr -- Intel Threading Building Blocks not found! -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found version "4.8.7") Qt PHONON library not found. -- QT qmake at /usr/bin/qmake -- QT moc at /usr/lib/i386-linux-gnu/qt4/bin/moc -- QT uic at /usr/lib/i386-linux-gnu/qt4/bin/uic -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at /usr/share/cmake-3.12/Modules/FindOpenGL.cmake:270 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib/i386-linux-gnu/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib/i386-linux-gnu/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib/i386-linux-gnu/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): CMakeLists.txt:350 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib/i386-linux-gnu/libOpenGL.so -- Could not find RTfact header file (RTpie/IRayTracer.hpp)! Real time ray tracing will be disabled! -- Found PythonInterp: /usr/bin/python2.7 -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so -- Found SIP version: 4.19.12 -- Found SIP: /usr/bin/sip (Required is at least version "4.8") -- spnav_include-NOTFOUND -- Could not find SpaceNavigator libraries. Disabling the SpaceNavigator plugin -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'loudmouth-1.0' -- No package 'loudmouth-1.0' found -- libloudmouth not found. Disabling the XML3D plugin. -- Could not find VRPN libraries. Disabling the VRPN plugin -- Could not find VRPN libraries. Disabling the VRPNHD plugin -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Doxygen not found. Disabling all documentation targets! -- Doxygen or Latex missing. Disabling 'tutorial' target! -- -- ----------------------------------------------------------------- -- -- You have successfully configured BALL. -- -- For a full list of make targets execute: -- 'make targets' -- -- ----------------------------------------------------------------- -- -- Cannot register BALL with CMake! For external code, set the path to BALL during find_package() manually. -- Configuring done -- Generating done -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' debian/rules:47: Building for i386 which is not amd64. We will run the test suite, but ignore any errors to prevent FTBFS. See Debian bug #830894 for the discussion and how you can help. ## Fix upstream issue of missing UI files uic-qt4 source/VIEW/DIALOGS/assignBondOrderConfigurationDialog.ui > include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h uic-qt4 source/VIEW/DIALOGS/assignBondOrderResultsDialog.ui > include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h uic-qt4 source/VIEW/DIALOGS/atomOverview.ui > include/BALL/VIEW/UIC/ui_atomOverview.h ## ... ## Uhmmm, seems we need to do this for all UI files mentioned in ## source/VIEW/DIALOGS/sources.cmake ## but I really hope some cmake expert might be able to find a clue ## how to trigger cmake to do it as intended by upstream. ## Somehow the code ## ADD_BALL_UIFILES("VIEW/DIALOGS" "") ## needs to be called before the build code below can be started make -C build BALL VIEW BALLView build_tests install make[2]: Entering directory '/<>/build' make[3]: Entering directory '/<>/build' make[4]: Entering directory '/<>/build' make[5]: Entering directory '/<>/build' [ 0%] Generating source/SYSTEM/moc_simpleDownloader.C [ 0%] [BISON][CIFParserParser] Building parser with bison 3.0.4 source/FORMAT/CIFParserParser.y: warning: 5 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][CIFParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][GAMESSDatParserParser] Building parser with bison 3.0.4 source/FORMAT/GAMESSDatParserParser.y: warning: 3 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][GAMESSDatParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][expressionParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][expressionParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][parsedFunctionParser] Building parser with bison 3.0.4 [ 0%] [FLEX][parsedFunctionLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][GAFFCESParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][GAFFCESParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][smilesParserParser] Building parser with bison 3.0.4 [ 0%] [FLEX][smilesParserLexer] Building scanner with flex 2.6.4 [ 0%] [BISON][smartsParserParser] Building parser with bison 3.0.4 source/STRUCTURE/smartsParserParser.y: warning: 26 shift/reduce conflicts [-Wconflicts-sr] [ 0%] [FLEX][smartsParserLexer] Building scanner with flex 2.6.4 Scanning dependencies of target BALL make[5]: Leaving directory '/<>/build' make[5]: Entering directory '/<>/build' [ 0%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.o [ 0%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/composite.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/source/CONCEPT/composite.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/embeddable.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/embeddable.h:9, from /<>/source/CONCEPT/embeddable.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/enumerator.o In file included from /<>/source/CONCEPT/enumerator.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/factory.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/source/CONCEPT/factory.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/object.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/object.h:13, from /<>/source/CONCEPT/object.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/objectCreator.h:9, from /<>/source/CONCEPT/objectCreator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/objectCreator.h:9, from /<>/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /<>/source/CONCEPT/moleculeObjectCreator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/source/CONCEPT/persistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/CONCEPT/preferencesObject.h:5, from /<>/source/CONCEPT/preferencesObject.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/processor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/source/CONCEPT/processor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/property.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/source/CONCEPT/property.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/CONCEPT/property.C: In member function ‘void BALL::PropertyManager::dump(std::ostream&, BALL::Size) const’: /<>/source/CONCEPT/property.C:316:56: warning: this statement may fall through [-Wimplicit-fallthrough=] s << "OBJECT: " << named_properties_[i].getObject(); ^ /<>/source/CONCEPT/property.C:317:5: note: here case NamedProperty::SMART_OBJECT: ^~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/selectable.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/selectable.h:11, from /<>/source/CONCEPT/selectable.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/textPersistenceManager.h:11, from /<>/source/CONCEPT/textPersistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/source/CONCEPT/timeStamp.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/visitor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/visitor.h:9, from /<>/source/CONCEPT/visitor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/CONCEPT/molecularInformation.h:9, from /<>/source/CONCEPT/molecularInformation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/XDRPersistenceManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/CONCEPT/XDRPersistenceManager.h:9, from /<>/source/CONCEPT/XDRPersistenceManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 3%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/client.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/client.h:9, from /<>/source/CONCEPT/client.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/constants.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/exception.o In file included from /<>/source/COMMON/exception.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/COMMON/exception.C:338:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/hash.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/hash.h:9, from /<>/source/COMMON/hash.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/init.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/logStream.o [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/rtti.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/source/COMMON/rtti.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/version.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/source/COMMON/version.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.o In file included from /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:9, from /<>/source/DATATYPE/GRAPH/graphAlgorithms.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/DATATYPE/GRAPH/graphAlgorithms.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.o In file included from /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:9, from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.o In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:13, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:21, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509, from /<>/source/DATATYPE/GRAPH/treeWidth.C:1: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/bitVector.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/bitVector.h:9, from /<>/source/DATATYPE/bitVector.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/contourSurface.h:9, from /<>/source/DATATYPE/contourSurface.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashGrid.h:9, from /<>/source/DATATYPE/hashGrid.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/options.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/source/DATATYPE/options.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/source/DATATYPE/regularExpression.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularData1D.h:9, from /<>/source/DATATYPE/regularData1D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9, from /<>/include/BALL/MATHS/vector2.h:9, from /<>/include/BALL/DATATYPE/regularData2D.h:9, from /<>/source/DATATYPE/regularData2D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 7%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/source/DATATYPE/regularData3D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/string.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/source/DATATYPE/string.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/atomicContactEnergy.h:11, from /<>/source/ENERGY/atomicContactEnergy.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/ENERGY/atomicContactEnergy.C:16: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/ENERGY/atomicContactEnergy.C:12: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::ACEFastAtomType*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::ACEFastAtomType*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::ACEFastAtomType*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/ENERGY/atomicContactEnergy.C:250:37: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/composedEnergyProcessor.h:11, from /<>/source/ENERGY/composedEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/coulomb.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/coulomb.h:11, from /<>/source/ENERGY/coulomb.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/distanceCoulomb.h:11, from /<>/source/ENERGY/distanceCoulomb.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/ENERGY/energyProcessor.h:11, from /<>/source/ENERGY/energyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/amiraMeshFile.h:10, from /<>/source/FORMAT/amiraMeshFile.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/antechamberFile.h:9, from /<>/source/FORMAT/antechamberFile.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/antechamberFile.C: In member function ‘virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)’: /<>/source/FORMAT/antechamberFile.C:100:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (atom_type.size()>10) ^~ /<>/source/FORMAT/antechamberFile.C:103:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ String atom_name = at_it->getElement().getSymbol(); ^~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/include/BALL/FORMAT/bruker1DFile.h:9, from /<>/source/FORMAT/bruker1DFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/include/BALL/FORMAT/bruker2DFile.h:9, from /<>/source/FORMAT/bruker2DFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/commandlineParser.h:5, from /<>/source/FORMAT/commandlineParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/include/BALL/FORMAT/dockResultFile.h:9, from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11, from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ /<>/source/FORMAT/dockResultFile.C: In copy constructor ‘BALL::DockResultFile::DockResultFile(const BALL::DockResultFile&)’: /<>/source/FORMAT/dockResultFile.C:161:3: warning: base class ‘class std::basic_ios’ should be explicitly initialized in the copy constructor [-Wextra] DockResultFile::DockResultFile(const DockResultFile &df) ^~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C:161:3: warning: base class ‘class BALL::GenericMolFile’ should be explicitly initialized in the copy constructor [-Wextra] /<>/source/FORMAT/dockResultFile.C:161:56: warning: unused parameter ‘df’ [-Wunused-parameter] DockResultFile::DockResultFile(const DockResultFile &df) ~~~~~~~~~~~~~~~~~~~~~~^~ /<>/source/FORMAT/dockResultFile.C: At global scope: /<>/source/FORMAT/dockResultFile.C:248:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:321:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (BALL::File::CannotWrite) ^~~~~ /<>/source/FORMAT/dockResultFile.C:547:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1067:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1098:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1161:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1199:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1241:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1272:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1280:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1288:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1332:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1366:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1409:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1455:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1490:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1517:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1547:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1610:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1648:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1689:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1718:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1781:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1810:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1845:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1876:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1884:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1932:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1967:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1975:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:1989:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ /<>/source/FORMAT/dockResultFile.C:2029:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CCP4File.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CCP4File.h:10, from /<>/source/FORMAT/CCP4File.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/CCP4File.C: In member function ‘virtual bool BALL::CCP4File::readSymmetryRecords()’: /<>/source/FORMAT/CCP4File.C:231:21: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘BALL::Distance’ {aka ‘int’} [-Wsign-compare] while (sym_lines < offset_symops_/80) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from /<>/source/FORMAT/CIFFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DCDFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/include/BALL/FORMAT/DCDFile.h:9, from /<>/source/FORMAT/DCDFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13, from /<>/include/BALL/FORMAT/DCDFile.h:9, from /<>/source/FORMAT/DCDFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DSN6File.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/DSN6File.h:9, from /<>/source/FORMAT/DSN6File.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from /<>/source/FORMAT/GAMESSDatFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 11%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/source/FORMAT/genericMolFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HINFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/HINFile.h:9, from /<>/source/FORMAT/HINFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HMOFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/HMOFile.h:8, from /<>/source/FORMAT/HMOFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/INIFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/source/FORMAT/INIFile.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/source/FORMAT/JCAMPFile.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/KCFFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/KCFFile.h:9, from /<>/source/FORMAT/KCFFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/source/FORMAT/lineBasedFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molDB.o In file included from /<>/include/BALL/FORMAT/molDB.h:10, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/molDB.h:18, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/include/BALL/FORMAT/molDB.h:20, from /<>/source/FORMAT/molDB.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOLFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOLFile.h:9, from /<>/source/FORMAT/MOLFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/molFileFactory.h:9, from /<>/source/FORMAT/molFileFactory.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11, from /<>/source/FORMAT/molFileFactory.C:11: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/FORMAT/molFileFactory.C:11: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/FORMAT/molFileFactory.C:11: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOPACInputFile.h:13, from /<>/source/FORMAT/MOPACInputFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOPACOutputFile.h:13, from /<>/source/FORMAT/MOPACOutputFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SDFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOLFile.h:9, from /<>/include/BALL/FORMAT/SDFile.h:9, from /<>/source/FORMAT/SDFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOL2File.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/MOL2File.h:9, from /<>/source/FORMAT/MOL2File.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/FORMAT/MOL2File.C:17: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from /<>/include/BALL/FORMAT/NMRStarFile.h:9, from /<>/source/FORMAT/NMRStarFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/NMRStarFile.h:17, from /<>/source/FORMAT/NMRStarFile.C:5: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/FORMAT/NMRStarFile.C: In member function ‘int BALL::NMRStarFile::valueToInt_(BALL::String)’: /<>/source/FORMAT/NMRStarFile.C:2277:24: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] } catch (Exception::InvalidFormat) { ^~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/paramFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/paramFile.h:9, from /<>/source/FORMAT/paramFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/FORMAT/parameters.h:12, from /<>/source/FORMAT/parameters.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameterSection.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/source/FORMAT/parameterSection.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/FORMAT/PDBdefs.h:9, from /<>/source/FORMAT/PDBdefs.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/FORMAT/PDBFileGeneral.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/FORMAT/PDBFileDetails.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/FORMAT/PDBRecords.h:12, from /<>/include/BALL/FORMAT/PDBInfo.h:12, from /<>/source/FORMAT/PDBInfo.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/FORMAT/PDBRecords.h:12, from /<>/source/FORMAT/PDBRecords.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/FORMAT/pubchemDownloader.h:9, from /<>/source/FORMAT/pubchemDownloader.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/resourceFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/FORMAT/resourceFile.h:9, from /<>/source/FORMAT/resourceFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/SCWRLRotamerFile.h:8, from /<>/source/FORMAT/SCWRLRotamerFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:13, from /<>/source/FORMAT/SCWRLRotamerFile.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/source/FORMAT/trajectoryFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13, from /<>/source/FORMAT/trajectoryFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/trajectoryFile.C: In member function ‘bool BALL::TrajectoryFile::operator==(const BALL::TrajectoryFile&) const’: /<>/source/FORMAT/trajectoryFile.C:44:30: warning: self-comparison always evaluates to true [-Wtautological-compare] && (number_of_snapshots_ == number_of_snapshots_) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFileFactory.h:9, from /<>/source/FORMAT/trajectoryFileFactory.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13, from /<>/source/FORMAT/trajectoryFileFactory.C:7: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/FORMAT/trajectoryFileFactory.C: In static member function ‘static BALL::TrajectoryFile* BALL::TrajectoryFileFactory::detectFormat(const BALL::String&)’: /<>/source/FORMAT/trajectoryFileFactory.C:103:68: warning: unused parameter ‘name’ [-Wunused-parameter] TrajectoryFile* TrajectoryFileFactory::detectFormat(const String& name) ~~~~~~~~~~~~~~^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/TRRFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/trajectoryFile.h:9, from /<>/include/BALL/FORMAT/TRRFile.h:9, from /<>/source/FORMAT/TRRFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/trajectoryFile.h:13, from /<>/include/BALL/FORMAT/TRRFile.h:9, from /<>/source/FORMAT/TRRFile.C:5: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/FORMAT/TRRFile.C:7: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/XYZFile.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/XYZFile.h:9, from /<>/source/FORMAT/XYZFile.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/CIFParserParser.C: In function ‘int CIFParserparse()’: /<>/build/source/FORMAT/CIFParserParser.C:1795:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] yyerror (YY_("syntax error")); ^ /<>/build/source/FORMAT/CIFParserParser.C:1939:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] yyerror (YY_("memory exhausted")); ^ source/FORMAT/CIFParserParser.y:213:29: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:219:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:209:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:205:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:204:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:203:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:198:51: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:197:51: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:196:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:195:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:194:51: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:230:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:233:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:218:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:217:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:214:29: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:236:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:239:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y:227:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserParser.y:2: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9, from source/FORMAT/CIFParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/CIFParserLexer.C:2176:17: warning: ‘void yyunput(int, char*)’ defined but not used [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from source/FORMAT/GAMESSDatParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/genericMolFile.h:9, from /<>/include/BALL/FORMAT/GAMESSDatFile.h:9, from source/FORMAT/GAMESSDatParserLexer.l:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/FORMAT/GAMESSDatParserLexer.C:2637:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atom.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/KERNEL/atom.h: In constructor ‘BALL::Atom::Atom()’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:21:2: warning: when initialized here [-Wreorder] Atom::Atom() ^~~~ In file included from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/KERNEL/atom.h: In copy constructor ‘BALL::Atom::Atom(const BALL::Atom&, bool)’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:40:2: warning: when initialized here [-Wreorder] Atom::Atom(const Atom& atom, bool deep) ^~~~ In file included from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/KERNEL/atom.h: In constructor ‘BALL::Atom::Atom(BALL::Element&, const BALL::String&, const BALL::String&, BALL::Atom::Type, const Vector3&, const Vector3&, const Vector3&, float, float, BALL::Index)’: /<>/include/BALL/KERNEL/atom.h:992:19: warning: ‘BALL::Atom::force_’ will be initialized after [-Wreorder] Vector3 force_; ^~~~~~ /<>/include/BALL/KERNEL/atom.h:623:27: warning: ‘BALL::MolecularInteractions* BALL::Atom::interactions’ [-Wreorder] MolecularInteractions* interactions; ^~~~~~~~~~~~ /<>/source/KERNEL/atom.C:59:2: warning: when initialized here [-Wreorder] Atom::Atom ^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atomContainer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/KERNEL/atomContainer.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/bond.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/source/KERNEL/bond.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/chain.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/source/KERNEL/chain.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expression.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/expression.h:9, from /<>/source/KERNEL/expression.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/KERNEL/expression.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/source/KERNEL/expressionPredicate.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionTree.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/source/KERNEL/expressionTree.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/source/KERNEL/expressionParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/extractors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/KERNEL/extractors.h:14, from /<>/source/KERNEL/extractors.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/fragment.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/KERNEL/fragment.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/global.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/global.h:11, from /<>/source/KERNEL/global.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/molecularInteractions.h:4, from /<>/source/KERNEL/molecularInteractions.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecule.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/KERNEL/molecule.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/KERNEL/nucleicAcid.h:9, from /<>/source/KERNEL/nucleicAcid.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleotide.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/nucleotide.h:9, from /<>/source/KERNEL/nucleotide.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/PDBAtom.h:9, from /<>/source/KERNEL/PDBAtom.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/predicate.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/KERNEL/predicate.h:11, from /<>/source/KERNEL/predicate.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/protein.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/source/KERNEL/protein.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PTE.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/KERNEL/PTE.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/residue.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/source/KERNEL/residue.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/KERNEL/residue.C:8: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/source/KERNEL/secondaryStructure.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/selector.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/expression.h:9, from /<>/include/BALL/KERNEL/selector.h:11, from /<>/source/KERNEL/selector.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/KERNEL/standardPredicates.h:11, from /<>/source/KERNEL/standardPredicates.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/KERNEL/standardPredicates.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/system.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/KERNEL/system.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from source/KERNEL/expressionParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ source/KERNEL/expressionParserParser.y:11:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] source/KERNEL/expressionParserParser.y:126:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] [ 26%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from source/KERNEL/expressionParserLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/KERNEL/expressionParserLexer.C:1845:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.o In file included from /<>/include/BALL/MATHS/analyticalGeometry.h:9, from /<>/source/MATHS/analyticalGeometry.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/angle.o In file included from /<>/include/BALL/MATHS/angle.h:9, from /<>/source/MATHS/angle.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/box3.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/box3.h:11, from /<>/source/MATHS/box3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/circle3.o In file included from /<>/include/BALL/MATHS/circle3.h:11, from /<>/source/MATHS/circle3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/cubicSpline1D.h:8, from /<>/source/MATHS/cubicSpline1D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/cubicSpline1D.h:8, from /<>/include/BALL/MATHS/cubicSpline2D.h:8, from /<>/source/MATHS/cubicSpline2D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/function.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/function.h:9, from /<>/source/MATHS/function.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/line3.o In file included from /<>/include/BALL/MATHS/line3.h:11, from /<>/source/MATHS/line3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/matrix44.o In file included from /<>/include/BALL/MATHS/matrix44.h:11, from /<>/source/MATHS/matrix44.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/source/MATHS/parsedFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/plane3.o In file included from /<>/include/BALL/MATHS/line3.h:11, from /<>/include/BALL/MATHS/plane3.h:16, from /<>/source/MATHS/plane3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 26%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/piecewiseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/source/MATHS/piecewiseFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/piecewisePolynomial.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/source/MATHS/piecewisePolynomial.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/quaternion.o In file included from /<>/include/BALL/MATHS/matrix44.h:11, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/source/MATHS/quaternion.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/randomNumberGenerator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/source/MATHS/randomNumberGenerator.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/simpleBox3.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/simpleBox3.h:11, from /<>/source/MATHS/simpleBox3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/sphere3.o In file included from /<>/include/BALL/MATHS/line3.h:11, from /<>/include/BALL/MATHS/plane3.h:16, from /<>/include/BALL/MATHS/sphere3.h:15, from /<>/source/MATHS/sphere3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/surface.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/MATHS/surface.h:9, from /<>/source/MATHS/surface.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector2.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/source/MATHS/vector2.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector3.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/source/MATHS/vector3.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector4.o In file included from /<>/include/BALL/MATHS/vector4.h:9, from /<>/source/MATHS/vector4.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT1D.o In file included from /<>/include/BALL/MATHS/FFT1D.h:9, from /<>/source/MATHS/FFT1D.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT2D.o In file included from /<>/include/BALL/MATHS/FFT2D.h:9, from /<>/source/MATHS/FFT2D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/MATHS/FFT2D.C: In constructor ‘BALL::TFFT2D::TFFT2D(BALL::Size, BALL::Size, double, double, BALL::Vector2, bool) [with ComplexTraits = BALL::FloatTraits]’: /<>/source/MATHS/FFT2D.C:348:134: warning: ‘*.BALL::TFFT2D::stepPhysY_’ is used uninitialized in this function [-Wuninitialized] : TRegularData2D(TRegularData2D::IndexType((ldnX), (ldnY)), -origin, Vector2((((ldnX)-1)*stepPhysX_),(((ldnX)-1)*stepPhysY_))), ^~~~~~~~~~ /<>/source/MATHS/FFT2D.C:348:110: warning: ‘*.BALL::TFFT2D::stepPhysX_’ is used uninitialized in this function [-Wuninitialized] : TRegularData2D(TRegularData2D::IndexType((ldnX), (ldnY)), -origin, Vector2((((ldnX)-1)*stepPhysX_),(((ldnX)-1)*stepPhysY_))), ^~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/FFT3D.o In file included from /<>/include/BALL/MATHS/FFT3D.h:9, from /<>/source/MATHS/FFT3D.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from source/MATHS/parsedFunctionParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from source/MATHS/parsedFunctionLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/MATHS/parsedFunctionLexer.C:1869:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/MOLMEC/AMBER/amber.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14, from /<>/source/MOLMEC/AMBER/amber.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:8: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amber.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amber.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:9: /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:10: /<>/include/BALL/MOLMEC/AMBER/amberBend.h:57:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:11: /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/source/MOLMEC/AMBER/amber.C:12: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amber.C:12: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amber.C:151:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:10, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/MOLMEC/AMBER/amberBend.h:57:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberBend.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberBend.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberNonBonded.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C:210:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘virtual void BALL::AmberNonBonded::update(const std::vector >&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:533:18: warning: the compiler can assume that the address of ‘atom_vector’ will never be NULL [-Waddress] if(&atom_vector==0) ~~~~~~~~~~~~^~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: At global scope: /<>/source/MOLMEC/AMBER/amberNonBonded.C:547:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘virtual void BALL::AmberNonBonded::update(const std::vector >&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:533:3: warning: nonnull argument ‘atom_vector’ compared to NULL [-Wnonnull-compare] if(&atom_vector==0) ^~ [ 30%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:10, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amber.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberStretch.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberStretch.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:11, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:23, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/amberTorsion.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:55:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:8: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:103:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:15: /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:105:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from source/MOLMEC/AMBER/GAFFCESParserParser.y:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from source/MOLMEC/AMBER/GAFFCESParserLexer.l:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C:1996:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] static void yynoreturn yy_fatal_error (const char* msg ) ^~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:11, from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmm.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmm.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:8: /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:9: /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:10: /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:116:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:11: /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:83:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33, from /<>/source/MOLMEC/CHARMM/charmm.C:12: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmm.C:12: /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:113:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:160:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmm.C:158:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:10, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /<>/source/MOLMEC/CHARMM/charmmBend.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmBend.C:6: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmBend.C:38:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:11, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:27, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:83:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:6: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:55:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:13, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:33, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:113:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:160:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:6: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:214:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:493:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:10, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:55:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual bool setup() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmStretch.C:6: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmStretch.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:11, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:27, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:116:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:6: /<>/include/BALL/MOLMEC/CHARMM/charmm.h:236:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:56:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/MOLMEC/COMMON/assignTypes.h:13, from /<>/source/MOLMEC/COMMON/assignTypes.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/atomVector.h:11, from /<>/source/MOLMEC/COMMON/atomVector.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:10, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/bendComponent.C:3: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/chargeRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/chargeRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:11, from /<>/source/MOLMEC/COMMON/forceField.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceField.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/source/MOLMEC/COMMON/forceField.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceField.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:527:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:552:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceField.C:645:36: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& ForceField::error() throw(Exception::TooManyErrors) ^~~~~ [ 34%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C: In copy constructor ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’: /<>/source/MOLMEC/COMMON/forceFieldComponent.C:34:2: warning: base class ‘class BALL::ScoringComponent’ should be explicitly initialized in the copy constructor [-Wextra] ForceFieldComponent::ForceFieldComponent(const ForceFieldComponent& force_field_component) ^~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C: At global scope: /<>/source/MOLMEC/COMMON/forceFieldComponent.C:50:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C:57:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C:101:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/gradient.h:16, from /<>/source/MOLMEC/COMMON/gradient.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/periodicBoundary.h:11, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/periodicBoundary.C:8: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:7: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = const BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1646:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/radiusRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/radiusRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/source/MOLMEC/COMMON/ruleEvaluator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/source/MOLMEC/COMMON/ruleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /<>/source/MOLMEC/COMMON/snapShot.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShot.C:6: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:183:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:235:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ /<>/source/MOLMEC/COMMON/snapShot.C:305:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/COMMON/snapShotManager.C:8: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShotManager.C:8: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/snapShotManager.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/COMMON/snapShotManager.C:389:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void SnapShotManager::takeSnapShot() throw(File::CannotWrite) ^~~~~ /<>/source/MOLMEC/COMMON/snapShotManager.C:583:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(File::CannotWrite) ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/MOLMEC/COMMON/support.C:39:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory) ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:235:39: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:504:62: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:10, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/COMMON/stretchComponent.C:3: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/typenameRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/typenameRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /<>/source/MOLMEC/COMMON/typeRuleProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:10: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:10: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MINIMIZATION/lineSearch.h:13, from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:10: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /<>/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:9: /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:189:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void takeSnapShot() throw(File::CannotWrite); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:221:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] virtual void flushToDisk() throw(File::CannotWrite); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/MOLMEC/MMFF94/MMFF94.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94.C:12: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94.C:12: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:12: /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:87:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94.C:14: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:89:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94.C:15: /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:59:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94.C:147:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function ‘double BALL::MMFF94StretchBend::calculateStretchR0(const BALL::Bond&)’: /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:1082:9: warning: comparison of integer expressions of different signedness: ‘BALL::Position’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] if(t1 == BALL_ATOM_DEFAULT_TYPE || t2 == BALL_ATOM_DEFAULT_TYPE) { /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:1082:41: warning: comparison of integer expressions of different signedness: ‘BALL::Position’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] if(t1 == BALL_ATOM_DEFAULT_TYPE || t2 == BALL_ATOM_DEFAULT_TYPE) { [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:87:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:87:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:641:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:1220:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:59:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:70:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:14: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function ‘virtual bool BALL::MMFF94ChargeProcessor::finish()’: /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:816:20: warning: enum constant in boolean context [-Wint-in-bool-context] return Processor::CONTINUE; ^~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:15, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:89:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:141:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:189:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /<>/source/MOLMEC/PARAMETER/atomTypes.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/charmmEEF1.h:12, from /<>/source/MOLMEC/PARAMETER/charmmEEF1.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /<>/source/MOLMEC/PARAMETER/cosineTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/PARAMETER/forceFieldParameters.h:10, from /<>/source/MOLMEC/PARAMETER/forceFieldParameters.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/source/MOLMEC/PARAMETER/lennardJones.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/potential1210.h:9, from /<>/source/MOLMEC/PARAMETER/potential1210.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticAngleBend.h:9, from /<>/source/MOLMEC/PARAMETER/quadraticAngleBend.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticBondStretch.h:9, from /<>/source/MOLMEC/PARAMETER/quadraticBondStretch.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /<>/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/residueTorsions.h:11, from /<>/source/MOLMEC/PARAMETER/residueTorsions.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/templates.h:11, from /<>/source/MOLMEC/PARAMETER/templates.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /<>/source/NMR/anisotropyShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/clearShiftProcessor.h:11, from /<>/source/NMR/clearShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/EFShiftProcessor.h:11, from /<>/source/NMR/EFShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/FORMAT/PDBFile.h:9, from /<>/source/NMR/empiricalHSShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/empiricalHSShiftProcessor.C:6: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:337:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/NMR/empiricalHSShiftProcessor.C:9: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:1579:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In constructor ‘BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(BALL::String, BALL::String, BALL::String, BALL::String, int)’: /<>/source/NMR/empiricalHSShiftProcessor.C:1577:92: warning: unused parameter ‘atomtype’ [-Wunused-parameter] EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(String filename, String atomtype, ~~~~~~~^~~~~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/experiment.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/include/BALL/NMR/experiment.h:11, from /<>/source/NMR/experiment.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/include/BALL/NMR/HBondShiftProcessor.h:11, from /<>/source/NMR/HBondShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/NMR/haighMallionShiftProcessor.h:8, from /<>/source/NMR/haighMallionShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/createSpectrumProcessor.h:11, from /<>/source/NMR/createSpectrumProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/createSpectrumProcessor.C:5: /<>/include/BALL/NMR/createSpectrumProcessor.h:75:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound, Exception::ParseError); ^~~~~ /<>/include/BALL/NMR/createSpectrumProcessor.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError, Exception::FileNotFound); ^~~~~ /<>/source/NMR/createSpectrumProcessor.C:21:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound, Exception::ParseError) ^~~~~ /<>/source/NMR/createSpectrumProcessor.C:52:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError, Exception::FileNotFound) ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peak.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/NMR/peak.h:11, from /<>/source/NMR/peak.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peakList.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/source/NMR/peakList.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/shiftModel.h:11, from /<>/source/NMR/shiftModel.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/NMR/shiftModel.C:5: /<>/include/BALL/NMR/shiftModel.h:111:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/NMR/shiftModel.h:120:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/include/BALL/NMR/shiftModel.h:187:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/NMR/shiftModel.C:14: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:337:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/NMR/shiftModel.C:92:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/shiftModel.C:142:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/NMR/shiftModel.C:197:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer) ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModule.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/source/NMR/shiftModule.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/spectrum.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/include/BALL/NMR/spectrum.h:11, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/NMR/spectrum.h:335, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/NMR/spectrum.iC: In constructor ‘BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float; BALL::Spectrum::PositionType = float]’: /<>/include/BALL/NMR/spectrum.iC:20:31: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] catch (Exception::OutOfGrid e) ^ In file included from /<>/include/BALL/NMR/spectrum.h:335, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/NMR/spectrum.iC: In constructor ‘BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2; BALL::Spectrum::PositionType = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:46:31: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] catch (Exception::OutOfGrid e) ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]’: /<>/include/BALL/NMR/spectrum.iC:135:32: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] catch (Exception::OutOfGrid e) ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:177:32: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] catch (Exception::OutOfGrid e) ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘void BALL::Spectrum::convertToLorentzian() [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]’: /<>/include/BALL/NMR/spectrum.iC:294:23: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] double separation, width; ^~~~~ /<>/include/BALL/NMR/spectrum.iC: In member function ‘void BALL::Spectrum::computeAllMoments(int) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:477:62: warning: unused parameter ‘moment_number’ [-Wunused-parameter] void Spectrum::computeAllMoments(int moment_number) ~~~~~^~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/NMR/johnsonBoveyShiftProcessor.h:8, from /<>/source/NMR/johnsonBoveyShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /<>/source/NMR/randomCoilShiftProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 46%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/PLUGIN/pluginManager.h:9, from /<>/source/PLUGIN/pluginManager.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/PYTHON/pyInterpreter.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/PYTHON/pyInterpreter.h:11, from /<>/source/PYTHON/pyInterpreter.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/PYTHON/pyInterpreter.C:7: /<>/include/BALL/PYTHON/pyInterpreter.h:102:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/PYTHON/pyInterpreter.C:356:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/source/QSAR/aromaticityProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘BALL::Size BALL::AromaticityProcessor::countPiElectrons_(BALL::HashSet&)’: /<>/source/QSAR/aromaticityProcessor.C:1010:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if ((*i)->countBonds() > 3) ^~ /<>/source/QSAR/aromaticityProcessor.C:1014:5: note: here case 6: // C ^~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/automaticModelCreator.h:2, from /<>/source/QSAR/automaticModelCreator.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/automaticModelCreator.C: In member function ‘void BALL::QSAR::AutomaticModelCreator::optimizeParameters(BALL::QSAR::Model*)’: /<>/source/QSAR/automaticModelCreator.C:35:39: warning: catching polymorphic type ‘class BALL::QSAR::Exception::SingularMatrixError’ by value [-Wcatch-value=] catch(Exception::SingularMatrixError e) ^ /<>/source/QSAR/automaticModelCreator.C: In member function ‘BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()’: /<>/source/QSAR/automaticModelCreator.C:80:43: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch(BALL::Exception::GeneralException e) ^ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/bayesModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/source/QSAR/bayesModel.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/source/QSAR/classificationModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationValidation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/classificationValidation.h:10, from /<>/source/QSAR/classificationValidation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/configIO.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/QSAR/configIO.h:9, from /<>/source/QSAR/configIO.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/source/QSAR/connectivityBase.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/include/BALL/QSAR/connectivityDescriptors.h:10, from /<>/source/QSAR/connectivityDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/descriptor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/source/QSAR/descriptor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/exception.o In file included from /<>/include/BALL/QSAR/exception.h:9, from /<>/source/QSAR/exception.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/kernel.h:10, from /<>/source/QSAR/kernel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernelModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/source/QSAR/kernelModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::calculateOffsets()’: /<>/source/QSAR/kernelModel.C:60:8: warning: unused variable ‘no_act’ [-Wunused-variable] int no_act = training_result_.cols(); ^~~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/kernelModel.C:99:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.o [ 50%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/linearModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/source/QSAR/linearModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/logitModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/logitModel.h:10, from /<>/source/QSAR/logitModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/logitModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LogitModel::predict(const std::vector&, bool)’: /<>/source/QSAR/logitModel.C:90:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int i = 0; i < res.rows(); i++) ~~^~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/Model.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/source/QSAR/Model.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readDescriptorInformation()’: /<>/source/QSAR/Model.C:182:29: warning: variable ‘y_transform’ set but not used [-Wunused-but-set-variable] bool transform = 0; bool y_transform = 0; ^~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘Eigen::VectorXd BALL::QSAR::Model::getSubstanceVector(const VectorXd&, bool)’: /<>/source/QSAR/Model.C:316:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C:316:109: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare] if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readVector(Eigen::RowVectorXd&, std::ifstream&, unsigned int, bool)’: /<>/source/QSAR/Model.C:486:94: warning: unused parameter ‘column_vector’ [-Wunused-parameter] void Model::readVector(Eigen::RowVectorXd & vec, ifstream& in, unsigned int no_cells, bool column_vector) ~~~~~^~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/modelFactory.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/include/BALL/QSAR/modelFactory.h:9, from /<>/source/QSAR/modelFactory.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nBModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/include/BALL/QSAR/nBModel.h:14, from /<>/source/QSAR/nBModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/nBModel.C: In member function ‘virtual void BALL::QSAR::NBModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/nBModel.C:241:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/source/QSAR/nonlinearModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/source/QSAR/partialChargeBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/include/BALL/QSAR/partialChargeDescriptors.h:11, from /<>/source/QSAR/partialChargeDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/include/BALL/QSAR/partialChargeProcessor.h:9, from /<>/source/QSAR/partialChargeProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/QSARData.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/source/QSAR/QSARData.C:8: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*)’: /<>/source/QSAR/QSARData.C:77:39: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] catch(BALL::Exception::ParseError e) ^ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’: /<>/source/QSAR/QSARData.C:201:39: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] catch(BALL::Exception::ParseError e) ^ /<>/source/QSAR/QSARData.C:292:44: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C:313:45: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C:330:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] for(int p=no_internal_descriptors; p>/source/QSAR/QSARData.C:332:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] if(descriptor_matrix_[p].size()>/source/QSAR/QSARData.C:343:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] for(int act=0; act>/source/QSAR/QSARData.C:345:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] if(Y_[act].size()>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::multiset&, bool, bool, bool)’: /<>/source/QSAR/QSARData.C:399:39: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] catch(BALL::Exception::ParseError e) ^ /<>/source/QSAR/QSARData.C:460:45: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C:488:45: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readCSVFile(const char*, int, bool, bool, const char*, bool, bool)’: /<>/source/QSAR/QSARData.C:1097:44: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C:1119:45: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch(BALL::Exception::InvalidFormat g) ^ /<>/source/QSAR/QSARData.C: In member function ‘std::vector BALL::QSAR::QSARData::evenSplit(int, int, int) const’: /<>/source/QSAR/QSARData.C:1354:26: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] if (i%no_test_splits == current_test_split_id) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/registry.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/include/BALL/QSAR/modelFactory.h:9, from /<>/include/BALL/QSAR/registry.h:5, from /<>/source/QSAR/registry.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/source/QSAR/regressionModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘void BALL::QSAR::RegressionModel::show()’: /<>/source/QSAR/regressionModel.C:48:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/regressionModel.C:129:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveDescriptorInformationToFile(std::ofstream&)’: /<>/source/QSAR/regressionModel.C:259:45: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::multiset::size_type’ {aka ‘unsigned int’} [-Wsign-compare] bool trained = (training_result_.rows() == descriptor_IDs_.size()); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/regressionModel.C:285:45: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] bool trained = (training_result_.rows() == descriptor_names_.size()); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionValidation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/regressionValidation.h:11, from /<>/source/QSAR/regressionValidation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/regressionValidation.C: In member function ‘virtual void BALL::QSAR::RegressionValidation::testInputData(bool)’: /<>/source/QSAR/regressionValidation.C:253:8: warning: variable ‘col’ set but not used [-Wunused-but-set-variable] int col = model_->data->descriptor_matrix_.size(); ^~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /<>/source/QSAR/ringPerceptionProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleBase.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/source/QSAR/simpleBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/QSAR/simpleBase.C:10: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/include/BALL/QSAR/simpleDescriptors.h:10, from /<>/source/QSAR/simpleDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/snBModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/include/BALL/QSAR/statistics.h:12, from /<>/include/BALL/QSAR/snBModel.h:14, from /<>/source/QSAR/snBModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/snBModel.C: In member function ‘virtual void BALL::QSAR::SNBModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/snBModel.C:235:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/statistics.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/MATHS/parsedFunction.h:9, from /<>/include/BALL/QSAR/statistics.h:12, from /<>/source/QSAR/statistics.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/statistics.C: In static member function ‘static double BALL::QSAR::Statistics::calculateRankCorrelation(std::vector&, std::vector&)’: /<>/source/QSAR/statistics.C:169:28: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] for(Size i=position; i>/source/QSAR/statistics.C:189:28: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] for(Size i=position; i>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/source/QSAR/surfaceBase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/include/BALL/QSAR/surfaceDescriptors.h:10, from /<>/source/QSAR/surfaceDescriptors.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svmModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/svmModel.h:10, from /<>/source/QSAR/svmModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/svrModel.h:10, from /<>/source/QSAR/svrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/validation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/source/QSAR/validation.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/allModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/source/QSAR/allModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/allModel.C: In member function ‘virtual void BALL::QSAR::ALLModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/allModel.C:202:9: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] bool sterr = 0; ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/featureSelection.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/featureSelection.h:9, from /<>/source/QSAR/featureSelection.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::forward(bool, int, bool)’: /<>/source/QSAR/featureSelection.C:134:37: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] catch(Exception::NoPCAVariance e) ^ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::backwardSelection(int, bool)’: /<>/source/QSAR/featureSelection.C:288:37: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] catch(Exception::NoPCAVariance e) ^ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::twinScan(int, bool)’: /<>/source/QSAR/featureSelection.C:449:36: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] catch(Exception::NoPCAVariance e) ^ /<>/source/QSAR/featureSelection.C:456:59: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] std::multiset< pair >::iterator it = potential_descriptors.insert(make_pair(1-model_->model_val->getCVRes(), i)); ^~ /<>/source/QSAR/featureSelection.C:485:36: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] catch(Exception::NoPCAVariance e) ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/gpModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/gpModel.h:10, from /<>/source/QSAR/gpModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/gpModel.C: In member function ‘virtual double BALL::QSAR::GPModel::calculateStdErr()’: /<>/source/QSAR/gpModel.C:88:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int i = 1; i <= K_t_.cols(); i++) ~~^~~~~~~~~~~~~~ /<>/source/QSAR/gpModel.C:90:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int j = 1; j <= K_t_.cols(); j++) ~~^~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/knnModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/include/BALL/QSAR/knnModel.h:10, from /<>/source/QSAR/knnModel.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kpcrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kpcrModel.h:10, from /<>/source/QSAR/kpcrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kplsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kplsModel.h:10, from /<>/source/QSAR/kplsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ldaModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/ldaModel.h:10, from /<>/source/QSAR/ldaModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LDAModel::predict(const std::vector&, bool)’: /<>/source/QSAR/ldaModel.C:123:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int i = 0; i < s.rows(); i++) ~~^~~~~~~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual void BALL::QSAR::LDAModel::saveToFile(std::__cxx11::string)’: /<>/source/QSAR/ldaModel.C:169:9: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] bool centered_y = 0; ^~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/mlrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/source/QSAR/mlrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/mlrModel.C: In member function ‘virtual void BALL::QSAR::MLRModel::train()’: /<>/source/QSAR/mlrModel.C:48:44: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch(BALL::Exception::GeneralException e) ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/oplsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/include/BALL/QSAR/oplsModel.h:10, from /<>/source/QSAR/oplsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/oplsModel.C: In member function ‘virtual void BALL::QSAR::OPLSModel::train()’: /<>/source/QSAR/oplsModel.C:43:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int i = 1; i <= u.rows(); i++) ~~^~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/pcrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/pcrModel.h:10, from /<>/source/QSAR/pcrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/pcrModel.C: In static member function ‘static void BALL::QSAR::PCRModel::calculateEigenvectors(const MatrixXd&, double, Eigen::MatrixXd&)’: /<>/source/QSAR/pcrModel.C:46:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:46:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) ~~~~~^~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:55:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int i = 0; i < data.rows(); i++) ~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/plsModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/source/QSAR/plsModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/rrModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/include/BALL/QSAR/rrModel.h:10, from /<>/source/QSAR/rrModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/rrModel.C: In member function ‘virtual void BALL::QSAR::RRModel::train()’: /<>/source/QSAR/rrModel.C:70:44: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch(BALL::Exception::GeneralException e) ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/fitModel.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/fitModel.h:16, from /<>/source/QSAR/fitModel.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/QSAR/fitModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::FitModel::predict(const std::vector&, bool)’: /<>/source/QSAR/fitModel.C:47:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] for (unsigned int j = 0; j < v.rows(); j++) ~~^~~~~~~~~~ /<>/source/QSAR/fitModel.C: In member function ‘virtual void BALL::QSAR::FitModel::train()’: /<>/source/QSAR/fitModel.C:162:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] int status; ^~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.o [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMMON/diffScoringFunction.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMMON/linearBaseFunction.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMMON/fermiBaseFunction.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/regularExpression.h:9, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/molFileFactory.h:9, from /<>/source/SCORING/COMMON/rescorer.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/FORMAT/dockResultFile.h:11, from /<>/source/SCORING/COMMON/rescorer.C:2: /<>/include/BALL/DOCKING/COMMON/result.h:128:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getInputConformer(Ligand* lig) throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/DOCKING/COMMON/result.h:134:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Conformation* getFirstOutputConformation(Ligand* lig) throw(Exception::GeneralException); ^~~~~ In file included from /<>/source/SCORING/COMMON/rescorer.C:2: /<>/include/BALL/FORMAT/dockResultFile.h:43:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Receptor* readReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:53:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Ligand* readLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:73:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector readResults() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:88:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Molecule* read() throw (Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:89:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool write(const Molecule& mol) throw (File::CannotWrite); ^~~~~ In file included from /<>/source/SCORING/COMMON/rescorer.C:2: /<>/include/BALL/FORMAT/dockResultFile.h:203:27: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptors_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:204:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readReceptor_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:205:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:206:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:207:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readPDBAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:209:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResults_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:210:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:211:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readSubResult() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:212:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readEntry() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:224:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigands() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:225:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readLigand_() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:226:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:227:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformations(FlexibleMolecule* target) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:228:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readConformation(Conformation* conformation) throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:229:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readCoordinates() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:230:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibility() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:231:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFlexibilities() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:232:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readFullFlexResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:233:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readRotamericResidue() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:234:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtoms() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:235:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtom() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:236:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBonds() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:237:21: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readBond() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:240:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildLigand() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:241:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildMolecule() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:242:26: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildReceptor() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:243:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildProtein() throw(Exception::ParseError); ^~~~~ /<>/include/BALL/FORMAT/dockResultFile.h:244:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void buildResidue() throw(Exception::ParseError); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/rescorer.h:14, from /<>/source/SCORING/COMMON/rescorer.C:3: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:18, from /<>/source/SCORING/COMMON/rescorer.C:4: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:10, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/COMMON/rescorer.C:5: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/COMMON/rescorer.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/COMMON/rescorer.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/COMMON/rescorer.C: In copy constructor ‘BALL::Rescorer::Rescorer(const BALL::Rescorer&)’: /<>/source/SCORING/COMMON/rescorer.C:28:37: warning: unused parameter ‘rescorer’ [-Wunused-parameter] Rescorer::Rescorer(const Rescorer& rescorer) ~~~~~~~~~~~~~~~~^~~~~~~~ /<>/source/SCORING/COMMON/rescorer.C: In member function ‘BALL::Rescorer& BALL::Rescorer::operator=(const BALL::Rescorer&)’: /<>/source/SCORING/COMMON/rescorer.C:32:50: warning: unused parameter ‘rescorer’ [-Wunused-parameter] Rescorer& Rescorer::operator = (const Rescorer& rescorer) ~~~~~~~~~~~~~~~~^~~~~~~~ /<>/source/SCORING/COMMON/rescorer.C: In static member function ‘static void BALL::Rescorer::processMultiMoleculeFile(BALL::ScoringFunction*, BALL::StructurePreparer*, BALL::String, BALL::Rescoring*, bool, double, BALL::String, BALL::GenericMolFile*, BALL::GenericMolFile*, double, bool)’: /<>/source/SCORING/COMMON/rescorer.C:410:45: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch (BALL::Exception::GeneralException e) ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.o In file included from /<>/include/BALL/MATHS/vector3.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:9, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1646:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/source/SCORING/COMMON/scoringComponent.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/source/SCORING/COMMON/scoringComponent.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringFunction.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1646:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:13: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10, from /<>/source/SCORING/COMMON/scoringOptimizer.C:13: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/COMMON/scoringOptimizer.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/COMMON/scoringOptimizer.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/COMMON/scoringOptimizer.C: In member function ‘void BALL::ScoringOptimizer::evaluate(double*, double*, double*, BALL::Size*)’: /<>/source/SCORING/COMMON/scoringOptimizer.C:183:43: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch(BALL::Exception::GeneralException e) ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:11, from /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1646:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /<>/source/SCORING/COMPONENTS/burialDepth.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /<>/source/SCORING/COMPONENTS/burialDepth.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /<>/source/SCORING/COMPONENTS/buriedPolar.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /<>/source/SCORING/COMPONENTS/buriedPolar.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/CHPI.h:9, from /<>/source/SCORING/COMPONENTS/CHPI.C:10: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/support.h:12, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/CHPISlick.h:7, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C: In member function ‘virtual void BALL::HydrogenBondSlick::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:219:73: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void HydrogenBondSlick::update(const vector >& pair_vector) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /<>/source/SCORING/COMPONENTS/lipophilic.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /<>/source/SCORING/COMPONENTS/lipophilic.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ /<>/source/SCORING/COMPONENTS/polarity.C: In member function ‘virtual void BALL::Polarity::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/polarity.C:101:68: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void Polarity::update(const std::vector >& pair_vector) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C: In member function ‘virtual double BALL::Polarity::updateScore()’: /<>/source/SCORING/COMPONENTS/polarity.C:189:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Position’ {aka ‘unsigned int’} [-Wsign-compare] for (; i <= pos_x+radius && i < x_size; i++) ~~^~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C:191:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Position’ {aka ‘unsigned int’} [-Wsign-compare] for (int j = j0; j <= pos_y+radius && j < y_size; j++) ~~^~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarity.C:193:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Position’ {aka ‘unsigned int’} [-Wsign-compare] for (int k = k0; k <= pos_z+radius && k < z_size; k++) ~~^~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/SCORING/COMPONENTS/polarity.C:179:49: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/PB.h:6, from /<>/source/SCORING/COMPONENTS/PB.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/PB.h:6, from /<>/source/SCORING/COMPONENTS/PB.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:10, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/PLP.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/SCORING/COMPONENTS/PLP.C:337:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /<>/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /<>/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:7: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:9: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:10: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function ‘virtual void BALL::NonpolarSolvation::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:376:73: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void NonpolarSolvation::update(const vector >& pair_vector) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:9, from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:5: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/polarSolvation.C:8: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SCORING/COMPONENTS/polarSolvation.C:9: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual void BALL::PolarSolvation::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:261:70: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void PolarSolvation::update(const vector >& pair_vector) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual bool BALL::PolarSolvation::setup()’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:191:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:198:5: note: here case CALCULATION__FULL_SLICK: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:199:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:206:5: note: here case CALCULATION__FULL_CYCLE: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:207:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:214:5: note: here case CALCULATION__FULL_CYCLE_FOCUSED: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:215:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:222:5: note: here case CALCULATION__COULOMB: ^~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:223:6: warning: this statement may fall through [-Wimplicit-fallthrough=] if (verbosity_ > 1) ^~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:230:5: note: here case CALCULATION__EEF1: ^~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:11, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function ‘virtual void BALL::VanDerWaalsSlick::update(const std::vector >&)’: /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:646:72: warning: unused parameter ‘pair_vector’ [-Wunused-parameter] void VanDerWaalsSlick::update(const vector >& pair_vector) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:2: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10, from /<>/source/SCORING/FUNCTIONS/rescoring.C:2: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ /<>/source/SCORING/FUNCTIONS/rescoring3D.C: In member function ‘std::__cxx11::list*> > BALL::Rescoring3D::generateRegularData3DGrids()’: /<>/source/SCORING/FUNCTIONS/rescoring3D.C:112:30: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] if (sizeX_*sizeY_*sizeZ_ < coefficients->rows()) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1688:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1646:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:12, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:65:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:17, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:12, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:65:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:67:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:10, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:11, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:10, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/MMScoring.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/MMScoring.C:8: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:8: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:216:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:11, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:8: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:8: /<>/include/BALL/SCORING/COMPONENTS/PLP.h:106:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:17, from /<>/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /<>/include/BALL/MOLMEC/COMMON/snapShot.h:126:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:142:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:155:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/snapShot.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PBScoring.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PBScoring.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:7, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:9: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:10: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:10, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:10: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:11: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:15: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SCORING/FUNCTIONS/slickScore.h:7, from /<>/source/SCORING/FUNCTIONS/slickScore.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:19, from /<>/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /<>/source/SCORING/FUNCTIONS/slickScore.C:6: /<>/include/BALL/STRUCTURE/residueRotamerSet.h:186:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setNumberOfTorsions(Size number_of_torsions) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/residueRotamerSet.h:189:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const Rotamer& operator [] (Position index) const throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:76:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:139:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:27, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/COMMON/support.h:90:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:8, from /<>/source/SCORING/FUNCTIONS/slickScore.C:7: /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:108:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:136:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:170:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:9, from /<>/source/SCORING/FUNCTIONS/slickScore.C:9: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/SCORING/FUNCTIONS/slickScore.C:14: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/FORMAT/INIFile.h:11, from /<>/include/BALL/FORMAT/parameters.h:12, from /<>/include/BALL/SOLVATION/claverieParameter.h:11, from /<>/source/SOLVATION/claverieParameter.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:19, from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:88:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer); ^~~~~ /<>/source/SOLVATION/electrostaticPotentialCalculator.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::NullPointer) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/generalizedBornCase.h:11, from /<>/source/SOLVATION/generalizedBornCase.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/generalizedBornCase.C:7: /<>/include/BALL/SOLVATION/generalizedBornCase.h:121:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:131:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/SOLVATION/generalizedBornCase.h:166:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:56:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:128:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/SOLVATION/generalizedBornCase.C:451:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/molecularSurfaceGrid.h:11, from /<>/source/SOLVATION/molecularSurfaceGrid.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/ooiEnergy.h:11, from /<>/source/SOLVATION/ooiEnergy.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/ooiEnergy.C:13: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 69%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:35, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:258:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:177:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/source/SOLVATION/pair6_12RDFIntegrator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:39, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/pairExpRDFIntegrator.h:11, from /<>/source/SOLVATION/pairExpRDFIntegrator.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/poissonBoltzmann.h:13, from /<>/source/SOLVATION/poissonBoltzmann.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:12: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector4; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector4]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector4; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/SOLVATION/poissonBoltzmann.C:571:35: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/solventDescriptor.h:11, from /<>/source/SOLVATION/solventDescriptor.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/SOLVATION/solventDescriptor.C:7: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/source/SOLVATION/solventDescriptor.C:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/SOLVATION/solventDescriptor.C:127:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/solventDescriptor.h:11, from /<>/include/BALL/SOLVATION/solventParameter.h:11, from /<>/source/SOLVATION/solventParameter.C:7: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/SOLVATION/solventParameter.h:11, from /<>/source/SOLVATION/solventParameter.C:7: /<>/include/BALL/SOLVATION/solventDescriptor.h:144:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/SOLVATION/solventDescriptor.h:149:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:11, from /<>/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:9, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:25, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:33, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h: At global scope: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual bool BALL::FPTBondOrderStrategy::readOptions(const BALL::Options&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:30:56: warning: unused parameter ‘options’ [-Wunused-parameter] bool FPTBondOrderStrategy::readOptions(const Options& options) ~~~~~~~~~~~~~~~^~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual void BALL::FPTBondOrderStrategy::init()’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:69:13: warning: unused variable ‘result’ [-Wunused-variable] Penalty result = bond_assignments[i]->compute(); ^~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘BALL::FPTBondOrderStrategy::DPTable_* BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_::operator()(BALL::FPTBondOrderStrategy::TreeDecompositionBag&, std::vector::const_iterator, std::vector::const_iterator)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:438:5: warning: this statement may fall through [-Wimplicit-fallthrough=] if (first == end || second == end || *second == NULL) ^~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:442:4: note: here case TreeWidth::INTRODUCE_BAG: ^~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:2: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /<>/source/STRUCTURE/addHydrogenProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/addHydrogenProcessor.C:12: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:64:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:341:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:554:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ [ 73%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/analyticalSES.h:9, from /<>/source/STRUCTURE/analyticalSES.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/assignBondOrderProcessor.C:10: /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:405:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const System& getSolution(Position i) throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/assignBondOrderProcessor.h:548:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomPenalties_() throw(Exception::FileNotFound()); ^~~~~ In file included from /<>/source/STRUCTURE/assignBondOrderProcessor.C:19: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/molecularGraph.h:16, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:25, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:30: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h: In function ‘BALL::GRAPH::UndoEliminateOperation BALL::GRAPH::eliminateVertexUndoable(const typename BALL::GRAPH::GraphTraits::VertexType&, UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h:184:129: warning: typedef ‘EdgeProperties’ locally defined but not used [-Wunused-local-typedefs] typedef typename boost::property_traits::type>::value_type EdgeProperties; ^~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/GRAPH/treeWidth.h:509, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:33, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:30: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC: In constructor ‘BALL::TreeWidth::TreeWidth(const UndirectedGraph&)’: /<>/include/BALL/DATATYPE/GRAPH/treeWidth.iC:49:76: warning: typedef ‘FillInHeuristic’ locally defined but not used [-Wunused-local-typedefs] typedef typename TreeWidthImplementation::FillInHeuristic FillInHeuristic; ^~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::AssignBondOrderProcessor::operator()(BALL::AtomContainer&)’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:594:51: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] && ((getNumberOfComputedSolutions() < max_number_of_solutions_) || (!max_number_of_solutions_)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: At global scope: /<>/source/STRUCTURE/assignBondOrderProcessor.C:630:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound()) ^~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:800:10: warning: variable ‘min_order’ set but not used [-Wunused-but-set-variable] Size min_order = 0; ^~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: At global scope: /<>/source/STRUCTURE/assignBondOrderProcessor.C:1300:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/atomBijection.h:9, from /<>/source/STRUCTURE/atomBijection.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/atomBijection.C:7: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/hashSet.h:9, from /<>/include/BALL/STRUCTURE/atomTyper.h:9, from /<>/source/STRUCTURE/atomTyper.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/STRUCTURE/atomTyper.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/binaryFingerprintMethods.h:9, from /<>/source/STRUCTURE/binaryFingerprintMethods.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C: In static member function ‘static bool BALL::BinaryFingerprintMethods::parseBinaryFingerprint(const BALL::String&, std::vector&, unsigned int, const char*)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:294:36: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] catch (Exception::InvalidFormat e) ^ /<>/source/STRUCTURE/binaryFingerprintMethods.C: In member function ‘void BALL::BinaryFingerprintMethods::setBlockSize(short unsigned int)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:617:18: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] if (blocksize > Limits::max()) ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C:619:16: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] blocksize_ = Limits::max() - 1; ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ /<>/source/STRUCTURE/binaryFingerprintMethods.C: In member function ‘BALL::BinaryFingerprintMethods::InvertedIndex* BALL::BinaryFingerprintMethods::createInvertedIndex(const std::vector*, unsigned int> >&)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:640:47: warning: ‘template class BALL::Limits’ is deprecated [-Wdeprecated-declarations] vector > feature_list(Limits::max() + 1, vector()); ^~~~~~ In file included from /<>/source/STRUCTURE/binaryFingerprintMethods.C:7: /<>/include/BALL/COMMON/limits.h:47:36: note: declared here class BALL_EXPORT BALL_DEPRECATED Limits ^~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:5, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/bindingPocketProcessor.C:4: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:21, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/bindingPocketProcessor.C:398:50: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:9, from /<>/source/STRUCTURE/buildBondsProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:5: /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:105:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] BuildBondsProcessor(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:129:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setBondLengths(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:169:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void readBondLengthsFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:11: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:50:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] BuildBondsProcessor::BuildBondsProcessor(const String& file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:434:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void BuildBondsProcessor::setBondLengths(const String& file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C:443:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void BuildBondsProcessor::readBondLengthsFromFile_(const String& file_name) throw(Exception::FileNotFound) ^~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:8: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/buildBondsProcessor.C:165:36: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/connectedComponentsProcessor.h:5, from /<>/source/STRUCTURE/connectedComponentsProcessor.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connolly.o In file included from /<>/source/STRUCTURE/connolly.C:103: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/defaultProcessors.h:9, from /<>/source/STRUCTURE/defaultProcessors.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/defaultProcessors.C:5: /<>/include/BALL/STRUCTURE/defaultProcessors.h:74:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:109:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/defaultProcessors.h:157:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound); ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:39:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:148:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:198:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/defaultProcessors.C:223:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/disulfidBondProcessor.h:5, from /<>/source/STRUCTURE/disulfidBondProcessor.C:9: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/disulfidBondProcessor.C:10: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.o In file included from /<>/source/STRUCTURE/DNAMutator.C:8: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/STRUCTURE/DNAMutator.C:16: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:21: /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:50:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:53:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:56:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(RMSDMinimizer::IncompatibleCoordinateSets, RMSDMinimizer::TooFewCoordinates); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:22: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:24: /<>/include/BALL/MOLMEC/COMMON/forceField.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:342:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceField.h:351:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] std::ostream& error() throw(Exception::TooManyErrors); ^~~~~ In file included from /<>/source/STRUCTURE/DNAMutator.C:25: /<>/include/BALL/MOLMEC/AMBER/amber.h:217:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::TooManyErrors); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/STRUCTURE/fragmentDB.h:9, from /<>/source/STRUCTURE/fragmentDB.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/geometricProperties.h:9, from /<>/source/STRUCTURE/geometricProperties.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/geometricProperties.C:5: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/geometricProperties.C:293:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition) ^~~~~ /<>/source/STRUCTURE/geometricProperties.C:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/geometricTransformations.h:9, from /<>/source/STRUCTURE/geometricTransformations.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/source/STRUCTURE/graphEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/graphEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphFace.h:9, from /<>/source/STRUCTURE/graphFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/graphFace.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphVertex.h:9, from /<>/source/STRUCTURE/graphVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/HBondProcessor.h:9, from /<>/source/STRUCTURE/HBondProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:10: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::HBondProcessor::ResidueData*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::HBondProcessor::ResidueData*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/HBondProcessor.C:350:68: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:9, from /<>/source/STRUCTURE/hybridisationProcessor.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/hybridisationProcessor.C:6: /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:119:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] HybridisationProcessor(const String& smarts_file_name, const String& ff_file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:143:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void setAtomTypeSmarts(const String& file_name) throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:192:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAtomTypeSmartsFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:205:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool readAndInitBondAnglesFromFile_(const String& file_name = "") throw(Exception::FileNotFound); ^~~~~ In file included from /<>/source/STRUCTURE/hybridisationProcessor.C:13: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:66:117: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] HybridisationProcessor::HybridisationProcessor(const String& smarts_file_name, const String& gaff_angle_file_name) throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:527:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:534:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound) ^~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:626:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::FileNotFound) ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/kekulizer.h:9, from /<>/source/STRUCTURE/kekulizer.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/STRUCTURE/kekulizer.C:13: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:14, from /<>/source/STRUCTURE/molecularSimilarity.C:6: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:17, from /<>/source/STRUCTURE/molecularSimilarity.C:6: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/molecularSimilarity.C: In member function ‘void BALL::MolecularSimilarity::generateFingerprint(BALL::Molecule&, std::vector&)’: /<>/source/STRUCTURE/molecularSimilarity.C:476:26: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] catch(BALL::Exception::GeneralException) ^~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/mutator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/stringHashMap.h:11, from /<>/include/BALL/STRUCTURE/fragmentDB.h:9, from /<>/source/STRUCTURE/mutator.C:3: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.o In file included from /<>/include/BALL/DATATYPE/hashMap.h:9, from /<>/include/BALL/STRUCTURE/nucleotideMapping.h:6, from /<>/source/STRUCTURE/nucleotideMapping.C:1: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/numericalSAS.h:9, from /<>/source/STRUCTURE/numericalSAS.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:9, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangle.h:13, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/triangle.h:137:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/triangle.h:146:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:17, from /<>/source/STRUCTURE/numericalSAS.C:6: /<>/include/BALL/STRUCTURE/trianglePoint.h:148:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/numericalSAS.C:7: /<>/include/BALL/STRUCTURE/geometricProperties.h:309:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ /<>/include/BALL/STRUCTURE/geometricProperties.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IllegalPosition); ^~~~~ In file included from /<>/source/STRUCTURE/numericalSAS.C:10: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = const BALL::Atom*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = const BALL::Atom*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/numericalSAS.C:150:73: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptides.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptides.h:9, from /<>/source/STRUCTURE/peptides.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/peptides.C:5: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/peptides.C:143:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()) ^~~~~ /<>/source/STRUCTURE/peptides.C:210:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()) ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptides.h:9, from /<>/include/BALL/STRUCTURE/peptideBuilder.h:9, from /<>/source/STRUCTURE/peptideBuilder.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/peptideBuilder.h:9, from /<>/source/STRUCTURE/peptideBuilder.C:5: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/peptideCapProcessor.h:9, from /<>/source/STRUCTURE/peptideCapProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/peptideCapProcessor.C:10: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/source/STRUCTURE/peptideCapProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::PeptideCapProcessor::operator()(BALL::Chain&)’: /<>/source/STRUCTURE/peptideCapProcessor.C:162:10: warning: variable ‘h1Atom’ set but not used [-Wunused-but-set-variable] Atom* h1Atom = NULL; ^~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/source/STRUCTURE/radialDistributionFunction.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/reconstructFragmentProcessor.h:11, from /<>/source/STRUCTURE/reconstructFragmentProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/include/BALL/STRUCTURE/RDFIntegrator.h:9, from /<>/source/STRUCTURE/RDFIntegrator.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/RDFParameter.h:9, from /<>/source/STRUCTURE/RDFParameter.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/MATHS/piecewiseFunction.h:9, from /<>/include/BALL/MATHS/piecewisePolynomial.h:11, from /<>/include/BALL/STRUCTURE/radialDistributionFunction.h:9, from /<>/include/BALL/STRUCTURE/RDFSection.h:9, from /<>/source/STRUCTURE/RDFSection.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/reducedSurface.h:9, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9, from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:207:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:220:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:233:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:583:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:676:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:712:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:744:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:774:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1006:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1097:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1212:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/reducedSurface.C:1265:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ In file included from /<>/source/STRUCTURE/reducedSurface.C:8: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/reducedSurface.C:1903:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:17, from /<>/include/BALL/MATHS/common.h:33, from /<>/include/BALL/STRUCTURE/residueChecker.h:9, from /<>/source/STRUCTURE/residueChecker.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/property.h:11, from /<>/include/BALL/KERNEL/bond.h:9, from /<>/source/STRUCTURE/rGroupAssembler.C:2: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/rGroupAssembler.h:12, from /<>/source/STRUCTURE/rGroupAssembler.C:4: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/ringAnalyser.h:9, from /<>/source/STRUCTURE/ringAnalyser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSEdge.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9, from /<>/source/STRUCTURE/RSEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSEdge.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/RSEdge.C:229:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSFace.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9, from /<>/source/STRUCTURE/RSFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSFace.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/RSFace.C:43:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/RSFace.C:97:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ /<>/source/STRUCTURE/RSFace.C:190:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSEdge.h:9, from /<>/source/STRUCTURE/RSVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/RSVertex.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/RSFace.h:9, from /<>/source/STRUCTURE/RSVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/source/STRUCTURE/RSVertex.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9, from /<>/source/STRUCTURE/SASEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9, from /<>/source/STRUCTURE/SASFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/source/STRUCTURE/SASVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9, from /<>/source/STRUCTURE/SASVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/STRUCTURE/sdGenerator.h:9, from /<>/source/STRUCTURE/sdGenerator.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/include/BALL/KERNEL/standardPredicates.h:27, from /<>/source/STRUCTURE/sdGenerator.C:10: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::prepare_()’: /<>/source/STRUCTURE/sdGenerator.C:107:10: warning: variable ‘has_acyclic_beta’ set but not used [-Wunused-but-set-variable] bool has_acyclic_beta = false; ^~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13, from /<>/source/STRUCTURE/SESEdge.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9, from /<>/source/STRUCTURE/SESEdge.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17, from /<>/source/STRUCTURE/SESEdge.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESEdge.C:7: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13, from /<>/source/STRUCTURE/SESFace.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9, from /<>/source/STRUCTURE/SESFace.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17, from /<>/source/STRUCTURE/SESFace.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESFace.C:7: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13, from /<>/source/STRUCTURE/SESVertex.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9, from /<>/source/STRUCTURE/SESVertex.C:6: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17, from /<>/source/STRUCTURE/SESVertex.C:6: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/SESVertex.C:7: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/source/STRUCTURE/SESVertex.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/secondaryStructureProcessor.h:9, from /<>/source/STRUCTURE/secondaryStructureProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12, from /<>/source/STRUCTURE/sideChainPlacementProcessor.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/sideChainPlacementProcessor.C:9: /<>/include/BALL/STRUCTURE/peptides.h:256:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ /<>/include/BALL/STRUCTURE/peptides.h:261:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (Exception::FileNotFound()); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smilesParser.h:9, from /<>/source/STRUCTURE/smilesParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/smilesParser.C:5: /<>/include/BALL/STRUCTURE/smilesParser.h:134:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/smilesParser.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from /<>/source/STRUCTURE/smartsParser.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/source/STRUCTURE/smartsParser.C:5: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ /<>/source/STRUCTURE/smartsParser.C:733:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/smartsParser.h:9, from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/STRUCTURE/smartsMatcher.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/smartsMatcher.h:9, from /<>/source/STRUCTURE/smartsMatcher.C:5: /<>/include/BALL/STRUCTURE/smartsParser.h:652:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::ParseError); ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:9, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASEdge.h:9, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:9, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SASFace.h:9, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:13, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:41, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/reducedSurface.h:45, from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:21, from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/solventAccessibleSurface.C:5: /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:86:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:91:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:100:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:105:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:114:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/solventAccessibleSurface.h:119:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:81:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:112:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:125:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:143:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/source/STRUCTURE/solventAccessibleSurface.C:156:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ [ 84%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.o In file included from /<>/build/include/BALL/COMMON/version.h:9, from /<>/include/BALL/common.h:24, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/COMMON/exception.h:547:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void newHandler() throw(Exception::OutOfMemory); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/graphEdge.h:168:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:177:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/include/BALL/STRUCTURE/graphEdge.h:460:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESEdge.h:13, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/RSEdge.h:301:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/graphFace.h:725:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:734:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:742:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:750:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1026:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1041:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1056:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ /<>/include/BALL/STRUCTURE/graphFace.h:1071:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow) ^~~~~ In file included from /<>/include/BALL/STRUCTURE/SESFace.h:17, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:13, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/RSFace.h:130:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:182:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/RSFace.h:238:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:17, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/SESVertex.h:145:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:21, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/reducedSurface.h:306:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:313:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:320:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:327:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::IndexOverflow); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:375:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:542:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:562:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:570:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:578:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:592:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:612:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException, ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:633:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:645:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ /<>/include/BALL/STRUCTURE/reducedSurface.h:657:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::DivisionByZero); ^~~~~ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:154:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:352:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:502:4: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException); ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:630:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:1047:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ /<>/source/STRUCTURE/solventExcludedSurface.C:1653:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(Exception::GeneralException) ^~~~~ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h: In instantiation of ‘BALL::TMatrix4x4& BALL::TQuaternion::getRotationMatrix(BALL::TMatrix4x4&) const [with T = double]’: /<>/source/STRUCTURE/solventExcludedSurface.C:2132:36: required from here /<>/include/BALL/MATHS/quaternion.h:543:26: error: ‘double boost::math::quaternion::c’ is private within this context (T)(1.0 - s * (this->c * this->c + this->d * this->d)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:543:36: error: ‘double boost::math::quaternion::c’ is private within this context (T)(1.0 - s * (this->c * this->c + this->d * this->d)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:543:46: error: ‘double boost::math::quaternion::d’ is private within this context (T)(1.0 - s * (this->c * this->c + this->d * this->d)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:543:56: error: ‘double boost::math::quaternion::d’ is private within this context (T)(1.0 - s * (this->c * this->c + this->d * this->d)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:544:20: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->b * this->c - this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:544:30: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->b * this->c - this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:544:40: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->b * this->c - this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:544:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->b * this->c - this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:545:20: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->d * this->b + this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:545:30: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->d * this->b + this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:545:40: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->d * this->b + this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:545:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->d * this->b + this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:548:20: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->b * this->c + this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:548:30: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->b * this->c + this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:548:40: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->b * this->c + this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:548:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->b * this->c + this->d * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:549:26: error: ‘double boost::math::quaternion::d’ is private within this context (T)(1.0 - s * (this->d * this->d + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:549:36: error: ‘double boost::math::quaternion::d’ is private within this context (T)(1.0 - s * (this->d * this->d + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:549:46: error: ‘double boost::math::quaternion::b’ is private within this context (T)(1.0 - s * (this->d * this->d + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:549:56: error: ‘double boost::math::quaternion::b’ is private within this context (T)(1.0 - s * (this->d * this->d + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:550:20: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->c * this->d - this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:550:30: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->c * this->d - this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:550:40: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->c * this->d - this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:550:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->c * this->d - this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:553:20: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->d * this->b - this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:553:30: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->d * this->b - this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:553:40: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->d * this->b - this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:553:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->d * this->b - this->c * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:554:20: error: ‘double boost::math::quaternion::c’ is private within this context (T)(s * (this->c * this->d + this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:554:30: error: ‘double boost::math::quaternion::d’ is private within this context (T)(s * (this->c * this->d + this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:554:40: error: ‘double boost::math::quaternion::b’ is private within this context (T)(s * (this->c * this->d + this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:554:50: error: ‘double boost::math::quaternion::a’ is private within this context (T)(s * (this->c * this->d + this->b * this->a)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:555:26: error: ‘double boost::math::quaternion::c’ is private within this context (T)(1.0 - s * (this->c * this->c + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:555:36: error: ‘double boost::math::quaternion::c’ is private within this context (T)(1.0 - s * (this->c * this->c + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:555:46: error: ‘double boost::math::quaternion::b’ is private within this context (T)(1.0 - s * (this->c * this->c + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:555:56: error: ‘double boost::math::quaternion::b’ is private within this context (T)(1.0 - s * (this->c * this->c + this->b * this->b)), ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h: In instantiation of ‘void BALL::TQuaternion::fromAxisAngle(const BALL::TVector3&, const T&) [with T = double]’: /<>/include/BALL/MATHS/quaternion.h:296:3: required from ‘BALL::TQuaternion::TQuaternion(const BALL::TVector3&, const T&) [with T = double]’ /<>/source/STRUCTURE/solventExcludedSurface.C:2130:51: required from here /<>/include/BALL/MATHS/quaternion.h:407:10: error: ‘double boost::math::quaternion::b’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:407:20: error: ‘double boost::math::quaternion::c’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:407:30: error: ‘double boost::math::quaternion::d’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:408:10: error: ‘double boost::math::quaternion::a’ is private within this context this->a = (T)1; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:415:10: error: ‘double boost::math::quaternion::a’ is private within this context this->a = (T)::cos(omega); ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:416:10: error: ‘double boost::math::quaternion::b’ is private within this context this->b = axis.x * sin_omega / length; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:417:10: error: ‘double boost::math::quaternion::c’ is private within this context this->c = axis.y * sin_omega / length; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:418:10: error: ‘double boost::math::quaternion::d’ is private within this context this->d = axis.z * sin_omega / length; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:1589:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1521:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:561:3: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:204:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:23: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:326:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:2159:27: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1747:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h: In instantiation of ‘void BALL::TQuaternion::setIdentity() [with T = double]’: /<>/include/BALL/MATHS/quaternion.h:271:9: required from ‘BALL::TQuaternion::TQuaternion() [with T = double]’ /<>/include/BALL/MATHS/quaternion.h:35:3: required from ‘void* BALL::TQuaternion::create(bool, bool) const [with T = double]’ /<>/include/BALL/MATHS/quaternion.h:35:3: required from here /<>/include/BALL/MATHS/quaternion.h:360:9: error: ‘double boost::math::quaternion::a’ is private within this context this->a = (T)1; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:14: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:360:9: note: field ‘double boost::math::quaternion::a’ can be accessed via ‘constexpr T boost::math::quaternion::R_component_1() const [with T = double]’ this->a = (T)1; ~~~~~~^ R_component_1() /<>/include/BALL/MATHS/quaternion.h:361:9: error: ‘double boost::math::quaternion::b’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:17: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:361:9: note: field ‘double boost::math::quaternion::b’ can be accessed via ‘constexpr T boost::math::quaternion::R_component_2() const [with T = double]’ this->b = this->c = this->d = (T)0; ~~~~~~^ R_component_2() /<>/include/BALL/MATHS/quaternion.h:361:19: error: ‘double boost::math::quaternion::c’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:20: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:361:19: note: field ‘double boost::math::quaternion::c’ can be accessed via ‘constexpr T boost::math::quaternion::R_component_3() const [with T = double]’ this->b = this->c = this->d = (T)0; ~~~~~~^ R_component_3() /<>/include/BALL/MATHS/quaternion.h:361:29: error: ‘double boost::math::quaternion::d’ is private within this context this->b = this->c = this->d = (T)0; ~~~~~~^ In file included from /<>/include/BALL/MATHS/quaternion.h:15, from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /usr/include/boost/math/quaternion.hpp:438:23: note: declared private here T a, b, c, d; ^ In file included from /<>/source/STRUCTURE/solventExcludedSurface.C:14: /<>/include/BALL/MATHS/quaternion.h:361:29: note: field ‘double boost::math::quaternion::d’ can be accessed via ‘constexpr T boost::math::quaternion::R_component_4() const [with T = double]’ this->b = this->c = this->d = (T)0; ~~~~~~^ R_component_4() make[5]: *** [CMakeFiles/BALL.dir/build.make:5212: CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.o] Error 1 make[5]: Leaving directory '/<>/build' make[4]: *** [CMakeFiles/Makefile2:1403: CMakeFiles/BALL.dir/all] Error 2 make[4]: Leaving directory '/<>/build' make[3]: *** [CMakeFiles/Makefile2:1415: CMakeFiles/BALL.dir/rule] Error 2 make[3]: Leaving directory '/<>/build' make[2]: *** [Makefile:669: BALL] Error 2 make[2]: Leaving directory '/<>/build' make[1]: *** [debian/rules:69: override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:22: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20181004-0038 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 813796 Build-Time: 2914 Distribution: cosmic Fail-Stage: build Host Architecture: i386 Install-Time: 164 Job: ball_1.4.3~beta1-4.dsc Machine Architecture: amd64 Package: ball Package-Time: 3091 Source-Version: 1.4.3~beta1-4 Space: 813796 Status: attempted Version: 1.4.3~beta1-4 -------------------------------------------------------------------------------- Finished at 20181004-0038 Build needed 00:51:31, 813796k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15353325 Scanning for processes to kill in build PACKAGEBUILD-15353325