https://launchpad.net/ubuntu/+archive/test-rebuild-20180911/+build/15418689 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-019 4.4.0-135-generic #161-Ubuntu SMP Mon Aug 27 10:45:41 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_164 python-lpbuildd_164 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Oct 07:07:55 ntpdate[1850]: adjust time server 10.211.37.1 offset 0.013738 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-15418689 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 Starting target for build PACKAGEBUILD-15418689 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 'deb http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic main' 'deb http://ftpmaster.internal/ubuntu cosmic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-15418689 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 Adding trusted keys to build-PACKAGEBUILD-15418689 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2010-04-12 [SC] DA1A 4A13 543B 4668 53BA F164 EB9B 1D88 86F4 4E2A uid [ unknown] Launchpad OpenJDK builds (all archs) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 Updating target for build PACKAGEBUILD-15418689 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic InRelease [15.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:5 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic/main arm64 Packages [3868 B] Get:6 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu cosmic/main Translation-en [912 B] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [978 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [513 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/restricted arm64 Packages [664 B] Get:10 http://ftpmaster.internal/ubuntu cosmic/restricted Translation-en [3888 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8562 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5075 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/multiverse arm64 Packages [125 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/multiverse Translation-en [113 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-security/universe arm64 Packages [7432 B] Get:16 http://ftpmaster.internal/ubuntu cosmic-security/universe Translation-en [2720 B] Fetched 15.8 MB in 6s (2548 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential bzip2 cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 libzstd1 linux-libc-dev make mount multiarch-support ncurses-base ncurses-bin openssl patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux 124 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 79.5 MB of archives. After this operation, 96.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main arm64 libc6-dev arm64 2.28-0ubuntu1 [2120 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libc-dev-bin arm64 2.28-0ubuntu1 [62.3 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 linux-libc-dev arm64 4.18.0-8.9 [996 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 libc6 arm64 2.28-0ubuntu1 [2315 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 libc-bin arm64 2.28-0ubuntu1 [497 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgomp1 arm64 8.2.0-7ubuntu1 [69.8 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 libitm1 arm64 8.2.0-7ubuntu1 [24.4 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8-base arm64 8.2.0-7ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc1 arm64 1:8.2.0-7ubuntu1 [34.3 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblsan0 arm64 8.2.0-7ubuntu1 [120 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtsan0 arm64 8.2.0-7ubuntu1 [269 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcc1-0 arm64 8.2.0-7ubuntu1 [36.2 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 libatomic1 arm64 8.2.0-7ubuntu1 [9140 B] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++6 arm64 8.2.0-7ubuntu1 [372 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu6 [60.3 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-4ubuntu1 [73.9 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 debianutils arm64 4.8.6 [84.7 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu3 [583 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdutils arm64 1:2.32-0.1ubuntu1 [54.6 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 tar arm64 1.30+dfsg-2 [214 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg arm64 1.19.0.5ubuntu5 [1123 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 libext2fs2 arm64 1.44.4-2 [152 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fsprogs arm64 1.44.4-2 [490 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 findutils arm64 4.6.0+git+20180808-2 [290 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 grep arm64 3.1-2ubuntu1 [145 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-4ubuntu1 [154 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-modules-5.26 all 5.26.2-7 [2764 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 libperl5.26 arm64 5.26.2-7 [3384 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl arm64 5.26.2-7 [202 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-base arm64 5.26.2-7 [1291 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 bzip2 arm64 1.0.6-9 [33.0 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbz2-1.0 arm64 1.0.6-9 [32.7 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.1 [616 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 sed arm64 4.5-1 [177 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuuid1 arm64 2.32-0.1ubuntu1 [18.4 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblkid1 arm64 2.32-0.1ubuntu1 [108 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfdisk1 arm64 2.32-0.1ubuntu1 [141 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-4ubuntu1 [107 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre3 arm64 2:8.39-11 [207 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libselinux1 arm64 2.8-1build1 [57.7 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmount1 arm64 2.32-0.1ubuntu1 [118 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsmartcols1 arm64 2.32-0.1ubuntu1 [73.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 fdisk arm64 2.32-0.1ubuntu1 [95.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 util-linux arm64 2.32-0.1ubuntu1 [831 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 init-system-helpers all 1.54 [38.3 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblz4-1 arm64 1.8.2-1ubuntu1 [75.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libudev1 arm64 239-7ubuntu9 [51.4 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 libzstd1 arm64 1.3.5+dfsg-1ubuntu1 [201 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~rc2ubuntu1 [748 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 debconf all 1.5.69 [121 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 adduser all 3.117ubuntu1 [163 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgpg-error0 arm64 1.32-1 [48.6 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcrypt20 arm64 1.8.3-1ubuntu1 [326 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgv arm64 2.2.8-3ubuntu1 [182 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 ubuntu-keyring all 2018.09.18.1 [22.3 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.14-2 [172 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 libunistring2 arm64 0.9.10-1ubuntu1 [370 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn2-0 arm64 2.0.5-1 [47.8 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtasn1-6 arm64 4.13-3 [32.1 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgnutls30 arm64 3.5.19-1ubuntu1 [587 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libseccomp2 arm64 2.3.3-3ubuntu1 [34.7 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~rc2ubuntu1 [1130 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapparmor1 arm64 2.12-4ubuntu8 [30.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu2 [36.0 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-1 arm64 0~20171227-0.1 [18.1 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcryptsetup12 arm64 2:2.0.4-2ubuntu2 [129 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkmod2 arm64 25-1ubuntu1 [33.9 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 mount arm64 2.32-0.1ubuntu1 [95.5 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-4ubuntu1 [80.8 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps7 arm64 2:3.3.15-2ubuntu1 [29.1 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 procps arm64 2:3.3.15-2ubuntu1 [217 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 systemd arm64 239-7ubuntu9 [2756 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsystemd0 arm64 239-7ubuntu9 [196 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 init arm64 1.54 [6380 B] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 systemd-sysv arm64 239-7ubuntu9 [9396 B] Get:81 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcom-err2 arm64 1.44.4-2 [8784 B] Get:82 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsepol1 arm64 2.8-1 [207 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage-common all 2.8-1build1 [7000 B] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage1 arm64 2.8-1build1 [70.8 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 libss2 arm64 1.44.4-2 [10.7 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libncurses5 arm64 6.1+20180210-4ubuntu1 [77.1 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-4ubuntu1 [96.3 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-4ubuntu1 [70.1 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn11 arm64 1.33-2.2ubuntu1 [45.0 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsqlite3-0 arm64 3.24.0-1 [434 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.1 arm64 1.1.0h-4ubuntu1 [996 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssl arm64 1.1.0h-4ubuntu1 [516 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpng16-16 arm64 1.6.34-2 [162 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 multiarch-support arm64 2.28-0ubuntu1 [6916 B] Get:99 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-common arm64 2.31.1-6ubuntu1 [195 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils arm64 2.31.1-6ubuntu1 [3368 B] Get:101 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-6ubuntu1 [2173 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbinutils arm64 2.31.1-6ubuntu1 [461 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main arm64 libisl19 arm64 0.20-2 [520 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-8 arm64 8.2.0-7ubuntu1 [5711 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp arm64 4:8.2.0-1ubuntu1 [27.6 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan5 arm64 8.2.0-7ubuntu1 [337 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan1 arm64 8.2.0-7ubuntu1 [113 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-8-dev arm64 8.2.0-7ubuntu1 [856 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8 arm64 8.2.0-7ubuntu1 [6465 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc arm64 4:8.2.0-1ubuntu1 [5232 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-8-dev arm64 8.2.0-7ubuntu1 [1510 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++-8 arm64 8.2.0-7ubuntu1 [6549 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++ arm64 4:8.2.0-1ubuntu1 [1588 B] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 make arm64 4.2.1-1.2 [154 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg-dev all 1.19.0.5ubuntu5 [607 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdpkg-perl all 1.19.0.5ubuntu5 [211 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main arm64 patch arm64 2.7.6-3 [99.6 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:119 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan4 arm64 7.3.0-29ubuntu1 [335 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan0 arm64 7.3.0-29ubuntu1 [117 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/universe arm64 g++-7 arm64 7.3.0-29ubuntu1 [6147 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7 arm64 7.3.0-29ubuntu1 [6001 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-7-dev arm64 7.3.0-29ubuntu1 [1465 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-7-dev arm64 7.3.0-29ubuntu1 [833 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-7 arm64 7.3.0-29ubuntu1 [5327 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7-base arm64 7.3.0-29ubuntu1 [18.7 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fslibs arm64 1.44.4-2 [2700 B] Get:128 http://ftpmaster.internal/ubuntu cosmic/main arm64 pinentry-curses arm64 1.1.0-1build2 [32.4 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnpth0 arm64 1.6-1 [7440 B] Get:130 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg arm64 2.2.8-3ubuntu1 [435 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgconf arm64 2.2.8-3ubuntu1 [116 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg-agent arm64 2.2.8-3ubuntu1 [213 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargon2-0 arm64 0~20171227-0.1 [4532 B] Get:134 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcomerr2 arm64 1.44.4-2 [2696 B] Get:135 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkgbinarymangler all 143 [53.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.5 MB in 3s (29.1 MB/s) (Reading database ... 12590 files and directories currently installed.) 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Setting up binutils (2.31.1-6ubuntu1) ... Setting up libstdc++-8-dev:arm64 (8.2.0-7ubuntu1) ... Setting up gcc-7 (7.3.0-29ubuntu1) ... Setting up g++-7 (7.3.0-29ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu5) ... Setting up gcc-8 (8.2.0-7ubuntu1) ... Setting up g++-8 (8.2.0-7ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu5) ... Setting up gcc (4:8.2.0-1ubuntu1) ... Setting up g++ (4:8.2.0-1ubuntu1) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15418689 arm64 cosmic -c chroot:build-PACKAGEBUILD-15418689 --arch=arm64 --dist=cosmic --nolog prime-phylo_1.0.11-6.dsc Initiating build PACKAGEBUILD-15418689 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-135-generic #161-Ubuntu SMP Mon Aug 27 10:45:41 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-019.buildd +==============================================================================+ | prime-phylo 1.0.11-6 (arm64) 03 Oct 2018 07:08 | +==============================================================================+ Package: prime-phylo Version: 1.0.11-6 Source Version: 1.0.11-6 Distribution: cosmic Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/prime-phylo-ehfK1C/prime-phylo-1.0.11' with '<>' I: NOTICE: Log filtering will replace 'build/prime-phylo-ehfK1C' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15418689/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- prime-phylo_1.0.11-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-a7P8A3/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-a7P8A3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a7P8A3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-a7P8A3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a7P8A3/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-a7P8A3/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (106 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-a7P8A3/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13602 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-prime-phylo-dummy' in '/<>/resolver-2cqU98/apt_archive/sbuild-build-depends-prime-phylo-dummy.deb'. Ign:1 copy:/<>/resolver-2cqU98/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2cqU98/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2cqU98/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2cqU98/apt_archive ./ Sources [294 B] Get:5 copy:/<>/resolver-2cqU98/apt_archive ./ Packages [617 B] Fetched 3030 B in 0s (133 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install prime-phylo build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbison-dev libblas-dev libblas3 libboost-dev libboost-mpi-dev libboost-mpi1.67-dev libboost-mpi1.67.0 libboost-serialization-dev libboost-serialization1.67-dev libboost-serialization1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpsl5 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 libxml2-dev m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff lrzip liblapack-doc libboost-doc libboost-graph1.67-dev libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user libhwloc-contrib-plugins icu-doc libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv python3.6-doc binfmt-support Recommended packages: libfl-dev curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales libcoarrays-dev publicsuffix libsasl2-modules open-coarrays-bin xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbison-dev libblas-dev libblas3 libboost-dev libboost-mpi-dev libboost-mpi1.67-dev libboost-mpi1.67.0 libboost-serialization-dev libboost-serialization1.67-dev libboost-serialization1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpsl5 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 libxml2-dev m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-prime-phylo-dummy zlib1g-dev 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 67.6 MB of archives. After this operation, 401 MB of additional disk space will be used. Get:1 copy:/<>/resolver-2cqU98/apt_archive ./ sbuild-build-depends-prime-phylo-dummy 0.invalid.0 [944 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpython3.6-minimal arm64 3.6.6-4 [526 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 libexpat1 arm64 2.2.6-1 [68.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3.6-minimal arm64 3.6.6-4 [1284 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3-minimal arm64 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpython3.6-stdlib arm64 3.6.6-4 [1605 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3.6 arm64 3.6.6-4 [190 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpython3-stdlib arm64 3.6.6-1 [7144 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3 arm64 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 man-db arm64 2.8.4-2 [1017 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 flex arm64 2.6.4-6.2 [307 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-0 arm64 2.58.1-2 [1106 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgirepository-1.0-1 arm64 1.58.0-1 [74.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 gir1.2-glib-2.0 arm64 1.58.0-1 [132 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 libelf1 arm64 0.170-0.5 [40.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-data all 2.58.1-2 [5476 B] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu1 [561 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext-base arm64 0.19.8.1-7 [48.1 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 libedit2 arm64 3.1-20180525-1 [67.0 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkrb5support0 arm64 1.16-2ubuntu1 [30.4 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 libk5crypto3 arm64 1.16-2ubuntu1 [86.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkeyutils1 arm64 1.5.9-9.3 [9512 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkrb5-3 arm64 1.16-2ubuntu1 [265 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgssapi-krb5-2 arm64 1.16-2ubuntu1 [113 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnuma1 arm64 2.0.11-2.2 [19.6 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpsl5 arm64 0.20.2-1 [48.4 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.0.0 arm64 1.0.2n-1ubuntu6 [724 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssh-client arm64 1:7.7p1-4 [582 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 autoconf all 2.69-11 [322 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 automake all 1:1.16.1-1.1ubuntu1 [522 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 autopoint all 0.19.8.1-7 [412 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbison-dev arm64 2:3.0.4.dfsg-1build1 [339 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 bison arm64 2:3.0.4.dfsg-1build1 [230 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 cmake-data all 3.12.1-1 [1419 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblzo2-2 arm64 2.10-0.1 [42.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive13 arm64 3.2.2-5 [277 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-2 [35.4 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-2 [130 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-2 [24.9 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-2 [75.2 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-2 [46.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-2 [88.5 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-2 [170 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-2 [13.4 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-2 [79.3 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsasl2-modules-db arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.4 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsasl2-2 arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [43.1 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libldap-2.4-2 arm64 2.4.46+dfsg-5ubuntu1 [131 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnghttp2-14 arm64 1.32.1-1 [74.6 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcurl4 arm64 7.61.0-1ubuntu1 [199 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjsoncpp1 arm64 1.7.4-3 [69.2 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 librhash0 arm64 1.3.6-2 [71.8 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuv1 arm64 1.22.0-3ubuntu1 [63.4 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 cmake arm64 3.12.1-1 [2997 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtool all 2.4.6-4 [196 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 19 [16.1 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive-zip-perl all 1.63-1 [84.8 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-7 [852 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 po-debconf all 1.0.20 [232 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/universe arm64 gengetopt arm64 2.22.6+dfsg0-3 [143 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran5 arm64 8.2.0-7ubuntu1 [308 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran-8-dev arm64 8.2.0-7ubuntu1 [355 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran-8 arm64 8.2.0-7ubuntu1 [6108 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran arm64 4:8.2.0-1ubuntu1 [1364 B] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfreetype6 arm64 2.8.1-2ubuntu2 [290 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgraphite2-3 arm64 1.3.12-1 [68.7 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 libharfbuzz0b arm64 1.8.8-2 [243 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main arm64 gir1.2-harfbuzz-0.0 arm64 1.8.8-2 [19.3 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-3-200 arm64 3.4.0-1 [51.5 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-route-3-200 arm64 3.4.0-1 [138 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main arm64 libibverbs1 arm64 19.0-1 [43.0 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main arm64 ibverbs-providers arm64 19.0-1 [148 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main arm64 icu-devtools arm64 60.2-6ubuntu1 [173 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblas3 arm64 3.8.0-1build1 [89.8 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblas-dev arm64 3.8.0-1build1 [92.3 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost1.67-dev arm64 1.67.0-7 [8364 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost-dev arm64 1.67.0.0ubuntu1 [3140 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost-serialization1.67.0 arm64 1.67.0-7 [286 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost-serialization1.67-dev arm64 1.67.0-7 [332 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4build1 [109 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4build1 [70.7 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4build1 [5044 B] Get:105 http://ftpmaster.internal/ubuntu cosmic/main arm64 libltdl7 arm64 2.4.6-4 [37.9 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc5 arm64 1.11.10-3 [85.1 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpciaccess0 arm64 0.14-1 [15.5 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main arm64 ocl-icd-libopencl1 arm64 2.2.11-1ubuntu1 [29.2 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc-plugins arm64 1.11.10-3 [11.2 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libpmix2 arm64 3.0.1-2 [374 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libopenmpi3 arm64 3.1.2-3 [2249 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libboost-mpi1.67.0 arm64 1.67.0-7 [242 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/universe arm64 openmpi-common all 3.1.2-3 [146 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 libibverbs-dev arm64 19.0-1 [120 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnuma-dev arm64 2.0.11-2.2 [31.1 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main arm64 libltdl-dev arm64 2.4.6-4 [162 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc-dev arm64 1.11.10-3 [150 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/universe arm64 openmpi-bin arm64 3.1.2-3 [85.4 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libopenmpi-dev arm64 3.1.2-3 [852 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/universe arm64 mpi-default-dev arm64 1.13 [3748 B] Get:121 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libboost-mpi1.67-dev arm64 1.67.0-7 [357 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libboost-mpi-dev arm64 1.67.0.0ubuntu1 [3012 B] Get:123 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libboost-serialization-dev arm64 1.67.0.0ubuntu1 [3148 B] Get:124 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-bin arm64 2.58.1-2 [68.3 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main arm64 python3-distutils all 3.6.6-1 [141 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-dev-bin arm64 2.58.1-2 [103 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre16-3 arm64 2:8.39-11 [125 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre32-3 arm64 2:8.39-11 [119 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcrecpp0v5 arm64 2:8.39-11 [15.0 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre3-dev arm64 2:8.39-11 [467 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkg-config arm64 0.29.1-0ubuntu2 [42.8 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-dev arm64 2.58.1-2 [1421 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgraphite2-dev arm64 1.3.12-1 [14.7 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/main arm64 libharfbuzz-icu0 arm64 1.8.8-2 [5828 B] Get:137 http://ftpmaster.internal/ubuntu cosmic/main arm64 libharfbuzz-gobject0 arm64 1.8.8-2 [13.4 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu-le-hb0 arm64 1.0.3+git161113-5 [14.5 kB] Get:139 http://ftpmaster.internal/ubuntu cosmic/main arm64 libiculx60 arm64 60.2-6ubuntu1 [18.7 kB] Get:140 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu-le-hb-dev arm64 1.0.3+git161113-5 [29.8 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu-dev arm64 60.2-6ubuntu1 [8887 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic/main arm64 libharfbuzz-dev arm64 1.8.8-2 [327 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblapack3 arm64 3.8.0-1build1 [1478 kB] Get:144 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblapack-dev arm64 3.8.0-1build1 [1511 kB] Get:145 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxml2-dev arm64 2.9.4+dfsg1-7ubuntu1 [683 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.6 MB in 3s (25.1 MB/s) Selecting previously unselected package libpython3.6-minimal:arm64. (Reading database ... 13602 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-4_arm64.deb ... Unpacking libpython3.6-minimal:arm64 (3.6.6-4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.6-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-1) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-4_arm64.deb ... Unpacking python3.6-minimal (3.6.6-4) ... Setting up libpython3.6-minimal:arm64 (3.6.6-4) ... Setting up libexpat1:arm64 (2.2.6-1) ... Setting up python3.6-minimal (3.6.6-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 13849 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_arm64.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... 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Setting up libedit2:arm64 (3.1-20180525-1) ... Setting up libicu60:arm64 (60.2-6ubuntu1) ... Setting up libevent-2.1-6:arm64 (2.1.8-stable-4build1) ... Setting up libevent-core-2.1-6:arm64 (2.1.8-stable-4build1) ... Setting up libarchive-zip-perl (1.63-1) ... Setting up libssl1.0.0:arm64 (1.0.2n-1ubuntu6) ... Setting up libnghttp2-14:arm64 (1.32.1-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up libuv1:arm64 (1.22.0-3ubuntu1) ... Setting up libpsl5:arm64 (0.20.2-1) ... Setting up libnuma1:arm64 (2.0.11-2.2) ... Setting up libelf1:arm64 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:arm64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:arm64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-7) ... Setting up cmake-data (3.12.1-1) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up libroken18-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up gengetopt (2.22.6+dfsg0-3) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libkrb5support0:arm64 (1.16-2ubuntu1) ... Setting up libgirepository-1.0-1:arm64 (1.58.0-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu1) ... Setting up libfreetype6:arm64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up libgraphite2-3:arm64 (1.3.12-1) ... Setting up librhash0:arm64 (1.3.6-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libblas3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:arm64 (1.58.0-1) ... Setting up libglib2.0-data (2.58.1-2) ... Setting up libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.1.2-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:arm64 (1.67.0-7) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libltdl7:arm64 (2.4.6-4) ... Setting up libbison-dev:arm64 (2:3.0.4.dfsg-1build1) ... Setting up libpciaccess0:arm64 (0.14-1) ... Setting up libpcrecpp0v5:arm64 (2:8.39-11) ... Setting up libpcre32-3:arm64 (2:8.39-11) ... Setting up libboost-serialization1.67.0:arm64 (1.67.0-7) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up libpcre16-3:arm64 (2:8.39-11) ... Setting up libboost-dev:arm64 (1.67.0.0ubuntu1) ... Setting up bison (2:3.0.4.dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libnuma-dev:arm64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:arm64 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:arm64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libgfortran5:arm64 (8.2.0-7ubuntu1) ... Setting up libgraphite2-dev:arm64 (1.3.12-1) ... Setting up autopoint (0.19.8.1-7) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up liblzo2-2:arm64 (2.10-0.1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libpython3.6-stdlib:arm64 (3.6.6-4) ... Setting up libk5crypto3:arm64 (1.16-2ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.39-11) ... Setting up python3.6 (3.6.6-4) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-7) ... Setting up libboost-serialization1.67-dev:arm64 (1.67.0-7) ... Setting up flex (2.6.4-6.2) ... Setting up libblas-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libarchive13:arm64 (3.2.2-5) ... Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libharfbuzz0b:arm64 (1.8.8-2) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhwloc5:arm64 (1.11.10-3) ... Setting up libhx509-5-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libhwloc-plugins:arm64 (1.11.10-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up gir1.2-harfbuzz-0.0:arm64 (1.8.8-2) ... Setting up automake (1:1.16.1-1.1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:arm64 (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libgfortran-8-dev:arm64 (8.2.0-7ubuntu1) ... Setting up libharfbuzz-gobject0:arm64 (1.8.8-2) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-4) ... Setting up libpython3-stdlib:arm64 (3.6.6-1) ... Setting up libibverbs1:arm64 (19.0-1) ... Setting up libboost-serialization-dev:arm64 (1.67.0.0ubuntu1) ... Setting up libharfbuzz-icu0:arm64 (1.8.8-2) ... Setting up libltdl-dev:arm64 (2.4.6-4) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up libhwloc-dev:arm64 (1.11.10-3) ... Setting up gfortran-8 (8.2.0-7ubuntu1) ... Setting up libicu-le-hb0:arm64 (1.0.3+git161113-5) ... Setting up libpmix2:arm64 (3.0.1-2) ... Setting up libgssapi-krb5-2:arm64 (1.16-2ubuntu1) ... Setting up ibverbs-providers:arm64 (19.0-1) ... Setting up libiculx60:arm64 (60.2-6ubuntu1) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up openssh-client (1:7.7p1-4) ... Setting up libibverbs-dev:arm64 (19.0-1) ... Setting up python3-distutils (3.6.6-1) ... Setting up gfortran (4:8.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libopenmpi3:arm64 (3.1.2-3) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up openmpi-bin (3.1.2-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libglib2.0-dev:arm64 (2.58.1-2) ... Setting up libldap-2.4-2:arm64 (2.4.46+dfsg-5ubuntu1) ... Setting up libboost-mpi1.67.0 (1.67.0-7) ... Setting up libopenmpi-dev:arm64 (3.1.2-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libcurl4:arm64 (7.61.0-1ubuntu1) ... Setting up mpi-default-dev (1.13) ... Setting up cmake (3.12.1-1) ... Setting up libboost-mpi1.67-dev (1.67.0-7) ... Setting up libboost-mpi-dev (1.67.0.0ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up libxml2-dev:arm64 (2.9.4+dfsg1-7ubuntu1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up libharfbuzz-dev:arm64 (1.8.8-2) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libicu-le-hb-dev:arm64 (1.0.3+git161113-5) ... Setting up sbuild-build-depends-prime-phylo-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-135-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-6ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-7_7.3.0-29ubuntu1 g++-8_8.2.0-7ubuntu1 gcc-7_7.3.0-29ubuntu1 gcc-8_8.2.0-7ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-7-dev_7.3.0-29ubuntu1 libstdc++-8-dev_8.2.0-7ubuntu1 libstdc++6_8.2.0-7ubuntu1 linux-libc-dev_4.18.0-8.9 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~rc2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-1.1ubuntu1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1ubuntu6 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-6ubuntu1 binutils-aarch64-linux-gnu_2.31.1-6ubuntu1 binutils-common_2.31.1-6ubuntu1 bison_2:3.0.4.dfsg-1build1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 cmake_3.12.1-1 cmake-data_3.12.1-1 coreutils_8.28-1ubuntu1 cpp_4:8.2.0-1ubuntu1 cpp-7_7.3.0-29ubuntu1 cpp-8_8.2.0-7ubuntu1 dash_0.5.8-2.10 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.34-2 findutils_4.6.0+git+20180808-2 flex_2.6.4-6.2 g++_4:8.2.0-1ubuntu1 g++-7_7.3.0-29ubuntu1 g++-8_8.2.0-7ubuntu1 gcc_4:8.2.0-1ubuntu1 gcc-7_7.3.0-29ubuntu1 gcc-7-base_7.3.0-29ubuntu1 gcc-8_8.2.0-7ubuntu1 gcc-8-base_8.2.0-7ubuntu1 gengetopt_2.22.6+dfsg0-3 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gfortran_4:8.2.0-1ubuntu1 gfortran-8_8.2.0-7ubuntu1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_1.8.8-2 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 ibverbs-providers_19.0-1 icu-devtools_60.2-6ubuntu1 init_1.54 init-system-helpers_1.54 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu8 libapt-pkg5.0_1.7.0~rc2ubuntu1 libarchive-zip-perl_1.63-1 libarchive13_3.2.2-5 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-29ubuntu1 libasan5_8.2.0-7ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2 libassuan0_2.5.1-2 libatomic1_8.2.0-7ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-6ubuntu1 libbison-dev_2:3.0.4.dfsg-1build1 libblas-dev_3.8.0-1build1 libblas3_3.8.0-1build1 libblkid1_2.32-0.1ubuntu1 libboost-dev_1.67.0.0ubuntu1 libboost-mpi-dev_1.67.0.0ubuntu1 libboost-mpi1.67-dev_1.67.0-7 libboost-mpi1.67.0_1.67.0-7 libboost-serialization-dev_1.67.0.0ubuntu1 libboost-serialization1.67-dev_1.67.0-7 libboost-serialization1.67.0_1.67.0-7 libboost1.67-dev_1.67.0-7 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-7ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl4_7.61.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu5 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2ubuntu2 libgcc-7-dev_7.3.0-29ubuntu1 libgcc-8-dev_8.2.0-7ubuntu1 libgcc1_1:8.2.0-7ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-8-dev_8.2.0-7ubuntu1 libgfortran5_8.2.0-7ubuntu1 libgirepository-1.0-1_1.58.0-1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1ubuntu1 libgomp1_8.2.0-7ubuntu1 libgpg-error0_1.32-1 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16-2ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2 libharfbuzz-dev_1.8.8-2 libharfbuzz-gobject0_1.8.8-2 libharfbuzz-icu0_1.8.8-2 libharfbuzz0b_1.8.8-2 libhcrypto4-heimdal_7.5.0+dfsg-2 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhwloc-dev_1.11.10-3 libhwloc-plugins_1.11.10-3 libhwloc5_1.11.10-3 libhx509-5-heimdal_7.5.0+dfsg-2 libibverbs-dev_19.0-1 libibverbs1_19.0-1 libicu-dev_60.2-6ubuntu1 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6ubuntu1 libiculx60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-7ubuntu1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2ubuntu1 libkrb5support0_1.16-2ubuntu1 liblapack-dev_3.8.0-1build1 liblapack3_3.8.0-1build1 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-7ubuntu1 libltdl-dev_2.4.6-4 libltdl7_2.4.6-4 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.32.1-1 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-1 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.1.2-3 libopenmpi3_3.1.2-3 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libpmix2_3.0.1-2 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-1 libpython3-stdlib_3.6.6-1 libpython3.6-minimal_3.6.6-4 libpython3.6-stdlib_3.6.6-4 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.4-2 libssl1.0.0_1.0.2n-1ubuntu6 libssl1.1_1.1.0h-4ubuntu1 libstdc++-7-dev_7.3.0-29ubuntu1 libstdc++-8-dev_8.2.0-7ubuntu1 libstdc++6_8.2.0-7ubuntu1 libsystemd0_239-7ubuntu9 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-4 libtsan0_8.2.0-7ubuntu1 libubsan0_7.3.0-29ubuntu1 libubsan1_8.2.0-7ubuntu1 libudev1_239-7ubuntu9 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libuv1_1.22.0-3ubuntu1 libwind0-heimdal_7.5.0+dfsg-2 libxml2_2.9.4+dfsg1-7ubuntu1 libxml2-dev_2.9.4+dfsg1-7ubuntu1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-8.9 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.2 man-db_2.8.4-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 mpi-default-dev_1.13 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.1.2-3 openmpi-common_3.1.2-3 openssh-client_1:7.7p1-4 openssl_1.1.0h-4ubuntu1 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.6-4 python3.6-minimal_3.6.6-4 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-prime-phylo-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7ubuntu9 systemd-sysv_239-7ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue May 22 12:24:04 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./prime-phylo_1.0.11-6.dsc dpkg-source: info: extracting prime-phylo in prime-phylo-1.0.11 dpkg-source: info: unpacking prime-phylo_1.0.11.orig.tar.gz dpkg-source: info: unpacking prime-phylo_1.0.11-6.debian.tar.xz dpkg-source: info: applying fix-ftbfs-with-Boost160.patch dpkg-source: info: applying fix-gcc-8.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15418689 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15418689 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15418689 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package prime-phylo dpkg-buildpackage: info: source version 1.0.11-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build prime-phylo-1.0.11 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-arch dh build-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -Dofficial_binary_packaging=on \ -Dprime_dynamic=on \ -DCMAKE_INSTALL_PREFIX=/usr \ -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo \ -DCMAKE_BUILD_TYPE=RELEASE cd obj-aarch64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -Dofficial_binary_packaging=on -Dprime_dynamic=on -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo -DCMAKE_BUILD_TYPE=RELEASE -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The Fortran compiler identification is GNU 8.2.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- The C compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so hittade /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found BISON: /usr/bin/bison (found version "3.0.4") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI_Fortran: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Boost version: 1.67.0 -- Found the following Boost libraries: -- mpi -- serialization -- Found LibXml2: /usr/lib/aarch64-linux-gnu/libxml2.so (found version "2.9.4") mpilib is /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi;/usr/lib/aarch64-linux-gnu/openmpi/include included path is CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "primeDTLSR". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/applications/primeDTLSR/CMakeLists.txt:30 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "primeDLRS". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/applications/primeDLRS/CMakeLists.txt:27 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "showtree". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/tools/showtree/CMakeLists.txt:12 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:120 (if): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: '@CMAKE_SOURCE_DIR@/excluded_from_release' the old evaluation rules produce: '/<>/excluded_from_release' but the new evaluation rules produce: '@CMAKE_SOURCE_DIR@/excluded_from_release' Using the old result for compatibility since the policy is not set. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-aarch64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 1%] [BISON][MyParser2] Building parser with bison 3.0.4 [ 1%] [FLEX][MyScanner2] Building scanner with flex 2.6.4 cd /<>/src/cxx/libraries/sfile && /usr/bin/flex -o/<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/lexer.c seqreader.l cd /<>/src/cxx/libraries/sfile && /usr/bin/bison -d -d -o /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c gb.y gb.y: warning: 1 nonterminal useless in grammar [-Wother] gb.y: warning: 1 rule useless in grammar [-Wother] gb.y:117.47-58: warning: nonterminal useless in grammar: darwin_entry [-Wother] %type gb_entry fasta_entry ig_entry darwin_entry ^^^^^^^^^^^^ gb.y:258.19-61: warning: rule useless in grammar [-Wother] darwin_entry : TEXT {$$ = NULL; /* Not implemented yet */} ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cxx/libraries/sfile /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake --color= Scanning dependencies of target prime-phylo-sfile make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o -c /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/lexer.c cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gbread.c.o -c /<>/src/cxx/libraries/sfile/gbread.c cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c /<>/src/cxx/libraries/sfile/sfile.c [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -c /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c /<>/src/cxx/libraries/sfile/gbread.c: In function ‘main’: /<>/src/cxx/libraries/sfile/gbread.c:17:10: warning: implicit declaration of function ‘strcmp’ [-Wimplicit-function-declaration] if (!strcmp(argv[opt], "-d")) { ^~~~~~ /<>/src/cxx/libraries/sfile/sfile.c: In function ‘seq_print’: /<>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] printf("%9d", char_counter + 1); ^~~~~ ~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable ‘date’ set but not used [-Wunused-but-set-variable] char *top, *date; ^~~~ /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c: In function ‘yyparse’: /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c:1237:16: warning: implicit declaration of function ‘yylex’ [-Wimplicit-function-declaration] yychar = yylex (); ^~~~~ gb.y: In function ‘yyerror’: gb.y:291:70: warning: implicit declaration of function ‘linenumber’ [-Wimplicit-function-declaration] gb.y: In function ‘add_to_seq’: gb.y:402:9: warning: unused variable ‘new_buf’ [-Wunused-variable] seqreader.l: In function ‘seq_read’: seqreader.l:270:9: warning: unused variable ‘code’ [-Wunused-variable] At top level: /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16: warning: ‘input’ defined but not used [-Wunused-function] static int input (void) ^~~~~ /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17: warning: ‘yyunput’ defined but not used [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^~~~~~~ [ 4%] Linking C shared library libprime-phylo-sfile.so cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo-sfile.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo-sfile.so -o libprime-phylo-sfile.so CMakeFiles/prime-phylo-sfile.dir/gbread.c.o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -Wl,-rpath,:::::::::::::::::::: make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 4%] Built target prime-phylo-sfile make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 5%] [BISON][MyParser] Building parser with bison 3.0.4 [ 5%] [FLEX][MyScanner] Building scanner with flex 2.6.4 cd /<>/src/cxx/libraries/prime && /usr/bin/flex -Pyytree_ -o/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/lexer.c NHX.l cd /<>/src/cxx/libraries/prime && /usr/bin/bison -d -y -p yytree_ -d -o /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/NHXparse.c NHXparse.y cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cxx/libraries/prime /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake --color= Scanning dependencies of target prime-phylo make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o [ 6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o [ 6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXnode.c.o -c /<>/src/cxx/libraries/prime/NHXnode.c cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXtree.c.o -c /<>/src/cxx/libraries/prime/NHXtree.c cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/lexer.c.o -c /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/lexer.c [ 7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXannotation.c.o -c /<>/src/cxx/libraries/prime/NHXannotation.c /<>/src/cxx/libraries/prime/NHXnode.c: In function ‘NHX_debug_print’: /<>/src/cxx/libraries/prime/NHXnode.c:155:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=] fprintf(stderr, "BW:\t%d\n", l->arg.t); ~^ ~~~~~~~~ %f /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/lexer.c:1597:16: warning: ‘input’ defined but not used [-Wunused-function] static int input (void) ^~~~~ /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/lexer.c:1554:17: warning: ‘yyunput’ defined but not used [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^~~~~~~ [ 8%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXparse.c.o -c /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/NHXparse.c [ 8%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/AnError.cc.o -c /<>/src/cxx/libraries/prime/AnError.cc /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/NHXparse.c: In function ‘yytree_parse’: /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/NHXparse.c:64:25: warning: implicit declaration of function ‘yytree_lex’; did you mean ‘yytree_parse’? [-Wimplicit-function-declaration] #define yylex yytree_lex ^~~~~~~~~~ /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime/NHXparse.c:1280:16: note: in expansion of macro ‘yylex’ yychar = yylex (); ^~~~~ NHXparse.y: In function ‘read_tree’: NHXparse.y:351:5: warning: implicit declaration of function ‘close’; did you mean ‘pclose’? [-Wimplicit-function-declaration] NHXparse.y: In function ‘read_tree_string’: NHXparse.y:399:3: warning: implicit declaration of function ‘read_from_string’; did you mean ‘read_tree_string’? [-Wimplicit-function-declaration] NHXparse.y:404:3: warning: implicit declaration of function ‘close_string_buffer’ [-Wimplicit-function-declaration] [ 9%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Beep.cc.o -c /<>/src/cxx/libraries/prime/Beep.cc [ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/BeepOption.cc.o -c /<>/src/cxx/libraries/prime/BeepOption.cc [ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Hacks.cc.o -c /<>/src/cxx/libraries/prime/Hacks.cc [ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/ODESolver.cc.o -c /<>/src/cxx/libraries/prime/ODESolver.cc [ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/PRNG.cc.o -c /<>/src/cxx/libraries/prime/PRNG.cc [ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -c /<>/src/cxx/libraries/prime/PrimeOptionMap.cc In file included from /<>/src/cxx/libraries/prime/ODESolver.cc:4: /<>/src/cxx/libraries/prime/ODESolver.hh:359:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::C2’ of non-integral type [-fpermissive] static const Real C2 = 1.0 / 5.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:360:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::C3’ of non-integral type [-fpermissive] static const Real C3 = 3.0 / 10.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:361:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::C4’ of non-integral type [-fpermissive] static const Real C4 = 4.0 / 5.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:362:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::C5’ of non-integral type [-fpermissive] static const Real C5 = 8.0 / 9.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:363:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A21’ of non-integral type [-fpermissive] static const Real A21 = 1.0 / 5.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:364:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A31’ of non-integral type [-fpermissive] static const Real A31 = 3.0 / 40.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:365:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A32’ of non-integral type [-fpermissive] static const Real A32 = 9.0 / 40.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:366:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A41’ of non-integral type [-fpermissive] static const Real A41 = 44.0 / 45.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:367:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A42’ of non-integral type [-fpermissive] static const Real A42 = -56.0 / 15.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:368:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A43’ of non-integral type [-fpermissive] static const Real A43 = 32.0 / 9.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:369:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A51’ of non-integral type [-fpermissive] static const Real A51 = 19372.0 / 6561.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A52’ of non-integral type [-fpermissive] static const Real A52 = -25360.0 / 2187.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A53’ of non-integral type [-fpermissive] static const Real A53 = 64448.0 / 6561.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A54’ of non-integral type [-fpermissive] static const Real A54 = -212.0 / 729.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A61’ of non-integral type [-fpermissive] static const Real A61 = 9017.0 / 3168.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A62’ of non-integral type [-fpermissive] static const Real A62 = -355.0 / 33.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A63’ of non-integral type [-fpermissive] static const Real A63 = 46732.0 / 5247.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A64’ of non-integral type [-fpermissive] static const Real A64 = 49.0 / 176.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A65’ of non-integral type [-fpermissive] static const Real A65 = -5103.0 / 18656.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A71’ of non-integral type [-fpermissive] static const Real A71 = 35.0 / 384.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A73’ of non-integral type [-fpermissive] static const Real A73 = 500.0 / 1113.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A74’ of non-integral type [-fpermissive] static const Real A74 = 125.0 / 192.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A75’ of non-integral type [-fpermissive] static const Real A75 = -2187.0 / 6784.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::A76’ of non-integral type [-fpermissive] static const Real A76 = 11.0 / 84.0; ^~~ /<>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E1’ of non-integral type [-fpermissive] static const Real E1 = 71.0 / 57600.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E3’ of non-integral type [-fpermissive] static const Real E3 = -71.0 / 16695.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E4’ of non-integral type [-fpermissive] static const Real E4 = 71.0 / 1920.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E5’ of non-integral type [-fpermissive] static const Real E5 = -17253.0 / 339200.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E6’ of non-integral type [-fpermissive] static const Real E6 = 22.0 / 525.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::E7’ of non-integral type [-fpermissive] static const Real E7 = -1.0 / 40.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D1’ of non-integral type [-fpermissive] static const Real D1 = -12715105075.0 / 11282082432.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D3’ of non-integral type [-fpermissive] static const Real D3 = 87487479700.0 / 32700410799.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D4’ of non-integral type [-fpermissive] static const Real D4 = -10690763975.0 / 1880347072.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D5’ of non-integral type [-fpermissive] static const Real D5 = 701980252875.0 / 199316789632.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D6’ of non-integral type [-fpermissive] static const Real D6 = -1453857185.0 / 822651844.0; ^~ /<>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::ODESolver::D7’ of non-integral type [-fpermissive] static const Real D7 = 69997945.0 / 29380423.0; ^~ [ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o -c /<>/src/cxx/libraries/prime/ProbabilityModel.cc In file included from /<>/src/cxx/libraries/prime/PrimeOptionMap.cc:3: /<>/src/cxx/libraries/prime/PrimeOption.hh: In member function ‘void beep::UserSubstitutionMatrixOption::parseParams(std::__cxx11::string&, unsigned int, std::vector&)’: /<>/src/cxx/libraries/prime/PrimeOption.hh:405:23: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] catch(std::exception e) ^ /<>/src/cxx/libraries/prime/PrimeOption.hh:423:23: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] catch(std::exception e) ^ [ 13%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o -c /<>/src/cxx/libraries/prime/DiscreteGamma.cc [ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Probability.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Probability.cc.o -c /<>/src/cxx/libraries/prime/Probability.cc [ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tokenizer.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o -c /<>/src/cxx/libraries/prime/Tokenizer.cc [ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o -c /<>/src/cxx/libraries/prime/TimeEstimator.cc [ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o -c /<>/src/cxx/libraries/prime/BranchSwapping.cc [ 16%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscTree.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/DiscTree.cc.o -c /<>/src/cxx/libraries/prime/DiscTree.cc [ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o -c /<>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc [ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o -c /<>/src/cxx/libraries/prime/EdgeDiscTree.cc [ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o -c /<>/src/cxx/libraries/prime/EpochPtMaps.cc [ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o -c /<>/src/cxx/libraries/prime/EpochPtSet.cc [ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochTree.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EpochTree.cc.o -c /<>/src/cxx/libraries/prime/EpochTree.cc In file included from /<>/src/cxx/libraries/prime/EpochPtMaps.hh:9, from /<>/src/cxx/libraries/prime/EpochPtMaps.cc:5: /<>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive] static const Real MIN_SPLICE_DELTA = 0.0001; ^~~~~~~~~~~~~~~~ [ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvMRCA.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o -c /<>/src/cxx/libraries/prime/InvMRCA.cc In file included from /<>/src/cxx/libraries/prime/EpochTree.cc:7: /<>/src/cxx/libraries/prime/EpochTree.hh:54:20: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive] static const Real MIN_SPLICE_DELTA = 0.0001; ^~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Node.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Node.cc.o -c /<>/src/cxx/libraries/prime/Node.cc [ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeMap.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NodeMap.cc.o -c /<>/src/cxx/libraries/prime/NodeMap.cc [ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o -c /<>/src/cxx/libraries/prime/NodeNodeMap.cc [ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o -c /<>/src/cxx/libraries/prime/RandomTreeGenerator.cc [ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StrStrMap.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o -c /<>/src/cxx/libraries/prime/StrStrMap.cc [ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tree.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Tree.cc.o -c /<>/src/cxx/libraries/prime/Tree.cc [ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o -c /<>/src/cxx/libraries/prime/TreeAnalysis.cc [ 24%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o -c /<>/src/cxx/libraries/prime/TreeDiscretizer.cc [ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o -c /<>/src/cxx/libraries/prime/TreeDiscretizers.cc [ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o -c /<>/src/cxx/libraries/prime/TreeMCMC.cc [ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIO.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<>/src/cxx/libraries/prime/TreeIO.cc [ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c /<>/src/cxx/libraries/prime/TreeInputOutput.cc [ 27%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o -c /<>/src/cxx/libraries/prime/TreeIOTraits.cc /<>/src/cxx/libraries/prime/TreeMCMC.cc: In constructor ‘beep::TreeMCMC::TreeMCMC(beep::MCMCModel&, beep::Tree&, const Real&)’: /<>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null] sprAccPropCnt(0, 0) ^ /<>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null] /<>/src/cxx/libraries/prime/TreeMCMC.cc:34:23: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null] [ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o -c /<>/src/cxx/libraries/prime/TreePerturbationEvent.cc [ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o -c /<>/src/cxx/libraries/prime/ConstRateModel.cc /<>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function ‘void beep::TreeInputOutput::fromFileStream(FILE*, beep::inputFormats)’: /<>/src/cxx/libraries/prime/TreeInputOutput.cc:118:22: warning: converting to non-pointer type ‘char’ from NULL [-Wconversion-null] buf[ bytes_read ]=NULL; ^~~~ [ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_common.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o -c /<>/src/cxx/libraries/prime/Density2P_common.cc /<>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function ‘beep::Node* beep::TreeInputOutput::extendBeepTree(beep::Tree&, xmlNodePtr, const beep::TreeIOTraits&, std::vector*, beep::StrStrMap*, std::map*, std::map*)’: /<>/src/cxx/libraries/prime/TreeInputOutput.cc:1049:22: warning: ‘idInt’ may be used uninitialized in this function [-Wmaybe-uninitialized] new_node = S.addNode(l, r, idInt, name); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o -c /<>/src/cxx/libraries/prime/Density2P_positive.cc In file included from /<>/src/cxx/libraries/prime/Density2P_common.cc:5: /<>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive] static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$ ^~ In file included from /<>/src/cxx/libraries/prime/Density2P_common.cc:6: /<>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive] static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$. ^~ [ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o -c /<>/src/cxx/libraries/prime/Density2PMCMC.cc [ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o -c /<>/src/cxx/libraries/prime/EdgeRateMCMC.cc [ 31%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o -c /<>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc [ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o -c /<>/src/cxx/libraries/prime/EdgeRateModel_common.cc [ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o -c /<>/src/cxx/libraries/prime/EdgeWeightHandler.cc /<>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc: In member function ‘void beep::EdgeRateMCMC_common::generateRates() [with Templ_EdgeRateModel = beep::gbmRateModel]’: /<>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:104:30: warning: unused variable ‘fparam’ [-Wunused-variable] Real fparam = std::log(rate) - 0.5 * variance * (rtime - 3.0 * ltime); ^~~~~~ /<>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:105:30: warning: unused variable ‘rparam’ [-Wunused-variable] Real rparam = variance * (rtime + ltime); ^~~~~~ [ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o -c /<>/src/cxx/libraries/prime/EdgeWeightMCMC.cc [ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaDensity.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o -c /<>/src/cxx/libraries/prime/GammaDensity.cc [ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o -c /<>/src/cxx/libraries/prime/InvGaussDensity.cc In file included from /<>/src/cxx/libraries/prime/InvGaussDensity.cc:1: /<>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive] static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$ ^~ /<>/src/cxx/libraries/prime/EdgeWeightMCMC.cc: In member function ‘void beep::EdgeWeightMCMC::showCurrentTree()’: /<>/src/cxx/libraries/prime/EdgeWeightMCMC.cc:106:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] for (int i = 0; i < t.size(); i++) ~~^~~~~~~~~~ [ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o -c /<>/src/cxx/libraries/prime/LengthRateModel.cc [ 35%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o -c /<>/src/cxx/libraries/prime/LogNormDensity.cc [ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NormalDensity.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o -c /<>/src/cxx/libraries/prime/NormalDensity.cc [ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/UniformDensity.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o -c /<>/src/cxx/libraries/prime/UniformDensity.cc In file included from /<>/src/cxx/libraries/prime/LogNormDensity.cc:1: /<>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive] static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$. ^~ In file included from /<>/src/cxx/libraries/prime/NormalDensity.cc:1: /<>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::NormalDensity::pi’ of non-integral type [-fpermissive] static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$. ^~ [ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/VarRateModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o -c /<>/src/cxx/libraries/prime/VarRateModel.cc [ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o -c /<>/src/cxx/libraries/prime/SiteRateHandler.cc [ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o -c /<>/src/cxx/libraries/prime/DummyMCMC.cc [ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o -c /<>/src/cxx/libraries/prime/MCMCModel.cc [ 39%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o -c /<>/src/cxx/libraries/prime/StdMCMCModel.cc In file included from /<>/src/cxx/libraries/prime/SiteRateHandler.cc:7: /<>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive] static const Real MAX = 1e10; //!< rates do not change for alpha > MAX. ^~~ [ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCObject.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o -c /<>/src/cxx/libraries/prime/MCMCObject.cc In file included from /<>/src/cxx/libraries/prime/StdMCMCModel.cc:5: /<>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive] static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$. ^~ In file included from /<>/src/cxx/libraries/prime/StdMCMCModel.cc:6: /<>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const Real beep::NormalDensity::pi’ of non-integral type [-fpermissive] static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$. ^~ [ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o -c /<>/src/cxx/libraries/prime/SimpleMCMC.cc [ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o -c /<>/src/cxx/libraries/prime/SimpleMCMCPostSample.cc [ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleML.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/SimpleML.cc.o -c /<>/src/cxx/libraries/prime/SimpleML.cc /<>/src/cxx/libraries/prime/SimpleMCMC.cc: In member function ‘virtual void beep::SimpleMCMC::iterate(unsigned int, unsigned int)’: /<>/src/cxx/libraries/prime/SimpleMCMC.cc:78:14: warning: variable ‘check_number_nonupdate’ set but not used [-Wunused-but-set-variable] unsigned check_number_nonupdate = 0; ^~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o -c /<>/src/cxx/libraries/prime/mcmc/MCMCSampler.cc [ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o -c /<>/src/cxx/libraries/prime/mcmc/GSRSampler.cc [ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o -c /<>/src/cxx/libraries/prime/mcmc/PosteriorSampler.cc [ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o -c /<>/src/cxx/libraries/prime/SimpleObserver.cc [ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o -c /<>/src/cxx/libraries/prime/MpiMCMC.cc [ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MultiGSR.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o -c /<>/src/cxx/libraries/prime/MultiGSR.cc [ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o cd /<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-aarch64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o -c /<>/src/cxx/libraries/prime/MpiMultiGSR.cc In file included from /usr/include/boost/serialization/extended_type_info_typeid.hpp:37, from /usr/include/boost/archive/detail/oserializer.hpp:40, from /usr/include/boost/mpi/detail/mpi_datatype_oarchive.hpp:14, from /usr/include/boost/mpi/detail/mpi_datatype_cache.hpp:13, from /usr/include/boost/mpi/datatype.hpp:27, from /usr/include/boost/mpi/communicator.hpp:22, from /<>/src/cxx/libraries/prime/Probability.hh:5, from /<>/src/cxx/libraries/prime/MpiMCMC.cc:3: /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector >]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector >]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector >]’ /usr/include/boost/archive/detail/oserializer.hpp:153:40: required from ‘void boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::mpi::packed_oarchive; T = std::vector >]’ /usr/include/boost/archive/detail/oserializer.hpp:106:1: required from ‘class boost::archive::detail::oserializer > >’ /usr/include/boost/archive/detail/oserializer.hpp:258:13: required from ‘static void boost::archive::detail::save_non_pointer_type::save_standard::invoke(Archive&, const T&) [with T = std::vector >; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/archive/detail/oserializer.hpp:315:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/mpi/packed_oarchive.hpp:97:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&, mpl_::false_) [with T = std::vector >; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/packed_oarchive.hpp:112:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&) [with T = std::vector >]’ /usr/include/boost/archive/detail/interface_oarchive.hpp:70:9: required from ‘Archive& boost::archive::detail::interface_oarchive::operator<<(const T&) [with T = std::vector >; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/mpi/collectives/broadcast.hpp:113:12: required from ‘void boost::mpi::detail::broadcast_impl(const boost::mpi::communicator&, T*, int, int, mpl_::false_) [with T = std::vector >; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/collectives/broadcast.hpp:141:25: required from ‘void boost::mpi::broadcast(const boost::mpi::communicator&, T&, int) [with T = std::vector >]’ /<>/src/cxx/libraries/prime/MpiMCMC.cc:112:33: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector >’ has no member named ‘serialize’ t.serialize(ar, file_version); ~~^~~~~~~~~ /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector >]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector >]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector >]’ /usr/include/boost/archive/detail/iserializer.hpp:189:40: required from ‘void boost::archive::detail::iserializer::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::mpi::packed_iarchive; T = std::vector >]’ /usr/include/boost/archive/detail/iserializer.hpp:121:1: required from ‘class boost::archive::detail::iserializer > >’ /usr/include/boost/archive/detail/iserializer.hpp:411:13: required from ‘static void boost::archive::detail::load_non_pointer_type::load_standard::invoke(Archive&, const T&) [with T = std::vector >; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/archive/detail/iserializer.hpp:463:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/mpi/packed_iarchive.hpp:99:5: required from ‘void boost::mpi::packed_iarchive::load_override(T&, mpl_::false_) [with T = std::vector >; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/packed_iarchive.hpp:116:5: required from ‘void boost::mpi::packed_iarchive::load_override(T&) [with T = std::vector >]’ /usr/include/boost/archive/detail/interface_iarchive.hpp:68:9: required from ‘Archive& boost::archive::detail::interface_iarchive::operator>>(T&) [with T = std::vector >; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/mpi/collectives/broadcast.hpp:133:12: required from ‘void boost::mpi::detail::broadcast_impl(const boost::mpi::communicator&, T*, int, int, mpl_::false_) [with T = std::vector >; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/collectives/broadcast.hpp:141:25: required from ‘void boost::mpi::broadcast(const boost::mpi::communicator&, T&, int) [with T = std::vector >]’ /<>/src/cxx/libraries/prime/MpiMCMC.cc:112:33: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector >’ has no member named ‘serialize’ /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/archive/detail/oserializer.hpp:153:40: required from ‘void boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/archive/detail/oserializer.hpp:106:1: required from ‘class boost::archive::detail::oserializer >’ /usr/include/boost/archive/detail/oserializer.hpp:258:13: required from ‘static void boost::archive::detail::save_non_pointer_type::save_standard::invoke(Archive&, const T&) [with T = std::vector; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/archive/detail/oserializer.hpp:315:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/mpi/packed_oarchive.hpp:97:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&, mpl_::false_) [with T = std::vector; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/packed_oarchive.hpp:112:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&) [with T = std::vector]’ /usr/include/boost/archive/detail/interface_oarchive.hpp:70:9: required from ‘Archive& boost::archive::detail::interface_oarchive::operator<<(const T&) [with T = std::vector; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/mpi/collectives/broadcast.hpp:113:12: required from ‘void boost::mpi::detail::broadcast_impl(const boost::mpi::communicator&, T*, int, int, mpl_::false_) [with T = std::vector; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/collectives/broadcast.hpp:141:25: required from ‘void boost::mpi::broadcast(const boost::mpi::communicator&, T&, int) [with T = std::vector]’ /<>/src/cxx/libraries/prime/MpiMCMC.cc:113:42: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector’ has no member named ‘serialize’ /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/archive/detail/iserializer.hpp:189:40: required from ‘void boost::archive::detail::iserializer::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/archive/detail/iserializer.hpp:121:1: required from ‘class boost::archive::detail::iserializer >’ /usr/include/boost/archive/detail/iserializer.hpp:411:13: required from ‘static void boost::archive::detail::load_non_pointer_type::load_standard::invoke(Archive&, const T&) [with T = std::vector; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/archive/detail/iserializer.hpp:463:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/mpi/packed_iarchive.hpp:99:5: required from ‘void boost::mpi::packed_iarchive::load_override(T&, mpl_::false_) [with T = std::vector; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/packed_iarchive.hpp:116:5: required from ‘void boost::mpi::packed_iarchive::load_override(T&) [with T = std::vector]’ /usr/include/boost/archive/detail/interface_iarchive.hpp:68:9: required from ‘Archive& boost::archive::detail::interface_iarchive::operator>>(T&) [with T = std::vector; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/mpi/collectives/broadcast.hpp:133:12: required from ‘void boost::mpi::detail::broadcast_impl(const boost::mpi::communicator&, T*, int, int, mpl_::false_) [with T = std::vector; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/collectives/broadcast.hpp:141:25: required from ‘void boost::mpi::broadcast(const boost::mpi::communicator&, T&, int) [with T = std::vector]’ /<>/src/cxx/libraries/prime/MpiMCMC.cc:113:42: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector’ has no member named ‘serialize’ make[3]: *** [src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make:949: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o] Error 1 make[3]: *** Waiting for unfinished jobs.... /<>/src/cxx/libraries/prime/MpiMultiGSR.cc: In member function ‘virtual beep::Probability beep::MpiMultiGSR::calcDataProbability(unsigned int)’: /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:6: warning: operation on ‘i’ may be undefined [-Wsequence-point] p[++i] = geneFams[i]->initStateProb();//updateDataProbability(); ^~~ /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:6: warning: operation on ‘i’ may be undefined [-Wsequence-point] /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:337:6: warning: operation on ‘i’ may be undefined [-Wsequence-point] In file included from /usr/include/boost/serialization/extended_type_info_typeid.hpp:37, from /usr/include/boost/archive/detail/oserializer.hpp:40, from /usr/include/boost/mpi/detail/mpi_datatype_oarchive.hpp:14, from /usr/include/boost/mpi/detail/mpi_datatype_cache.hpp:13, from /usr/include/boost/mpi/datatype.hpp:27, from /usr/include/boost/mpi/communicator.hpp:22, from /<>/src/cxx/libraries/prime/MpiMultiGSR.hh:11, from /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:6: /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/archive/detail/oserializer.hpp:153:40: required from ‘void boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::mpi::packed_oarchive; T = std::vector]’ /usr/include/boost/archive/detail/oserializer.hpp:106:1: required from ‘class boost::archive::detail::oserializer >’ /usr/include/boost/archive/detail/oserializer.hpp:258:13: required from ‘static void boost::archive::detail::save_non_pointer_type::save_standard::invoke(Archive&, const T&) [with T = std::vector; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/archive/detail/oserializer.hpp:315:22: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/mpi/packed_oarchive.hpp:97:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&, mpl_::false_) [with T = beep::SeriMultiGSRvars; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/packed_oarchive.hpp:112:5: required from ‘void boost::mpi::packed_oarchive::save_override(const T&) [with T = beep::SeriMultiGSRvars]’ /usr/include/boost/archive/detail/interface_oarchive.hpp:70:9: required from ‘Archive& boost::archive::detail::interface_oarchive::operator<<(const T&) [with T = beep::SeriMultiGSRvars; Archive = boost::mpi::packed_oarchive]’ /usr/include/boost/mpi/communicator.hpp:1528:12: required from ‘boost::mpi::request boost::mpi::communicator::isend_impl(int, int, const T&, mpl_::false_) const [with T = beep::SeriMultiGSRvars; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/communicator.hpp:1539:65: required from ‘boost::mpi::request boost::mpi::communicator::isend(int, int, const T&) const [with T = beep::SeriMultiGSRvars]’ /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:388:43: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector’ has no member named ‘serialize’ t.serialize(ar, file_version); ~~^~~~~~~~~ /usr/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’: /usr/include/boost/serialization/serialization.hpp:68:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/serialization/serialization.hpp:126:14: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/archive/detail/iserializer.hpp:189:40: required from ‘void boost::archive::detail::iserializer::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::mpi::packed_iarchive; T = std::vector]’ /usr/include/boost/archive/detail/iserializer.hpp:121:1: required from ‘class boost::archive::detail::iserializer >’ /usr/include/boost/archive/detail/iserializer.hpp:411:13: required from ‘static void boost::archive::detail::load_non_pointer_type::load_standard::invoke(Archive&, const T&) [with T = std::vector; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/archive/detail/iserializer.hpp:463:22: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/archive/detail/interface_iarchive.hpp:68:9: required from ‘Archive& boost::archive::detail::interface_iarchive::operator>>(T&) [with T = beep::SeriMultiGSRvars; Archive = boost::mpi::packed_iarchive]’ /usr/include/boost/mpi/communicator.hpp:1591:10: required from ‘void boost::mpi::detail::serialized_irecv_data::deserialize(boost::mpi::status&) [with T = beep::SeriMultiGSRvars]’ /usr/include/boost/mpi/communicator.hpp:1688:5: required from ‘static boost::optional boost::mpi::request::handle_serialized_irecv(boost::mpi::request*, boost::mpi::request::request_action) [with T = beep::SeriMultiGSRvars]’ /usr/include/boost/mpi/communicator.hpp:1803:17: required from ‘boost::mpi::request boost::mpi::communicator::irecv_impl(int, int, T&, mpl_::false_) const [with T = beep::SeriMultiGSRvars; mpl_::false_ = mpl_::bool_]’ /usr/include/boost/mpi/communicator.hpp:1817:67: required from ‘boost::mpi::request boost::mpi::communicator::irecv(int, int, T&) const [with T = beep::SeriMultiGSRvars]’ /<>/src/cxx/libraries/prime/MpiMultiGSR.cc:458:51: required from here /usr/include/boost/serialization/access.hpp:116:11: error: ‘class std::vector’ has no member named ‘serialize’ make[3]: *** [src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make:975: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o] Error 1 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:142: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[1]: *** [Makefile:155: all] Error 2 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_auto_build: cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:12: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20181003-0712 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 79088 Build-Time: 163 Distribution: cosmic Fail-Stage: build Host Architecture: arm64 Install-Time: 49 Job: prime-phylo_1.0.11-6.dsc Machine Architecture: arm64 Package: prime-phylo Package-Time: 214 Source-Version: 1.0.11-6 Space: 79088 Status: attempted Version: 1.0.11-6 -------------------------------------------------------------------------------- Finished at 20181003-0712 Build needed 00:03:34, 79088k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15418689 Scanning for processes to kill in build PACKAGEBUILD-15418689