https://launchpad.net/ubuntu/+archive/test-rebuild-20181220-gcc9/+build/15910427 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-013 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:32:22 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 8 Jan 20:10:23 ntpdate[1747]: adjust time server 10.211.37.1 offset 0.057190 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 /home/buildd/filecache-default/5f92d5ecab7ce0d953bb2def2bd7e5fe5fb7c904 Creating target for build PACKAGEBUILD-15910427 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 Starting target for build PACKAGEBUILD-15910427 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco main' 'deb http://ftpmaster.internal/ubuntu disco main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-15910427 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 Adding trusted keys to build-PACKAGEBUILD-15910427 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 Updating target for build PACKAGEBUILD-15910427 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco InRelease [15.4 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco InRelease [15.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x Packages [23.1 kB] Get:6 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main Translation-en [13.3 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main s390x Packages [941 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x Packages [142 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main Translation-en [26.9 kB] Get:12 http://ftpmaster.internal/ubuntu disco/universe s390x Packages [8564 kB] Get:13 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5170 kB] Get:14 http://ftpmaster.internal/ubuntu disco/multiverse s390x Packages [122 kB] Get:15 http://ftpmaster.internal/ubuntu disco/multiverse Translation-en [113 kB] Fetched 16.0 MB in 3s (5244 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libgcc-9-dev libstdc++-9-dev The following packages will be upgraded: binutils binutils-common binutils-s390x-linux-gnu cpp cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++ g++-8 gcc gcc-8 gcc-8-base grep init init-system-helpers libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libitm1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libubsan1 libzstd1 sed tzdata 42 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 49.0 MB of archives. After this operation, 87.0 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x gcc-9-base s390x 9-20190102-0ubuntu2 [187 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main s390x dpkg s390x 1.19.2ubuntu2 [1080 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libgcc1 s390x 1:9-20190102-0ubuntu2 [24.4 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libstdc++6 s390x 9-20190102-0ubuntu2 [411 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libgomp1 s390x 9-20190102-0ubuntu2 [82.5 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libitm1 s390x 9-20190102-0ubuntu2 [26.9 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libatomic1 s390x 9-20190102-0ubuntu2 [8380 B] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libasan5 s390x 9-20190102-0ubuntu2 [345 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main s390x dash s390x 0.5.10.2-3ubuntu1 [83.8 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main s390x grep s390x 3.3-1 [146 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main s390x sed s390x 4.7-1 [187 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main s390x init-system-helpers all 1.56+nmu1 [38.2 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main s390x libext2fs2 s390x 1.44.5-1 [155 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libubsan1 s390x 9-20190102-0ubuntu2 [122 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main s390x e2fsprogs s390x 1.44.5-1 [490 kB] Get:16 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x g++-8 s390x 8.2.0-13ubuntu1 [6360 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main s390x init s390x 1.56+nmu1 [6080 B] Get:18 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage-common all 2.8-2 [7016 B] Get:19 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage1 s390x 2.8-2 [78.5 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main s390x libzstd1 s390x 1.3.8+dfsg-3 [204 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main s390x libgnutls30 s390x 3.6.5-2ubuntu1 [661 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main s390x libcom-err2 s390x 1.44.5-1 [9200 B] Get:23 http://ftpmaster.internal/ubuntu disco/main s390x libss2 s390x 1.44.5-1 [10.6 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main s390x libsqlite3-0 s390x 3.26.0-3 [493 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main s390x tzdata all 2018i-1 [189 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main s390x dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main s390x libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main s390x e2fslibs s390x 1.44.5-1 [2704 B] Get:29 http://ftpmaster.internal/ubuntu disco/main s390x libassuan0 s390x 2.5.2-1 [32.1 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main s390x libcomerr2 s390x 1.44.5-1 [2700 B] Get:31 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x gcc-8 s390x 8.2.0-13ubuntu1 [6266 kB] Get:32 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x libstdc++-8-dev s390x 8.2.0-13ubuntu1 [1503 kB] Get:33 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x libgcc-8-dev s390x 8.2.0-13ubuntu1 [654 kB] Get:34 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libcc1-0 s390x 9-20190102-0ubuntu2 [37.8 kB] Get:35 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x binutils-s390x-linux-gnu s390x 2.31.1-11ubuntu1 [1679 kB] Get:36 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x libbinutils s390x 2.31.1-11ubuntu1 [304 kB] Get:37 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x binutils s390x 2.31.1-11ubuntu1 [3328 B] Get:38 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x binutils-common s390x 2.31.1-11ubuntu1 [194 kB] Get:39 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x cpp-8 s390x 8.2.0-13ubuntu1 [5504 kB] Get:40 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x gcc-8-base s390x 8.2.0-13ubuntu1 [18.6 kB] Get:41 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x cpp-9 s390x 9-20190102-0ubuntu2 [5618 kB] Get:42 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libgcc-9-dev s390x 9-20190102-0ubuntu2 [684 kB] Get:43 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x gcc-9 s390x 9-20190102-0ubuntu2 [6245 kB] Get:44 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libstdc++-9-dev s390x 9-20190102-0ubuntu2 [1569 kB] Get:45 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x g++-9 s390x 9-20190102-0ubuntu2 [6463 kB] Get:46 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x g++ s390x 4:9-20181126-1ubuntu3 [1572 B] Get:47 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x gcc s390x 4:9-20181126-1ubuntu3 [5180 B] Get:48 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x cpp s390x 4:9-20181126-1ubuntu3 [42.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.0 MB in 1s (33.7 MB/s) (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_s390x.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-3ubuntu1_s390x.deb ... Unpacking dash (0.5.10.2-3ubuntu1) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-3ubuntu1) ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_s390x.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_s390x.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_s390x.deb ... Unpacking libext2fs2:s390x (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:s390x (1.44.5-1) ... (Reading database ... 12437 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_s390x.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../init_1.56+nmu1_s390x.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../gcc-9-base_9-20190102-0ubuntu2_s390x.deb ... Unpacking gcc-9-base:s390x (9-20190102-0ubuntu2) ... Setting up gcc-9-base:s390x (9-20190102-0ubuntu2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9-20190102-0ubuntu2_s390x.deb ... 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Unpacking libassuan0:s390x (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../32-libcomerr2_1.44.5-1_s390x.deb ... Unpacking libcomerr2:s390x (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libcom-err2:s390x (1.44.5-1) ... Setting up libgomp1:s390x (9-20190102-0ubuntu2) ... Setting up libatomic1:s390x (9-20190102-0ubuntu2) ... Setting up libss2:s390x (1.44.5-1) ... Setting up libcc1-0:s390x (9-20190102-0ubuntu2) ... Setting up e2fslibs:s390x (1.44.5-1) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 8 20:10:39 UTC 2019. Universal Time is now: Tue Jan 8 20:10:39 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up binutils-common:s390x (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up cpp-9 (9-20190102-0ubuntu2) ... Setting up gcc-8-base:s390x (8.2.0-13ubuntu1) ... Setting up libsqlite3-0:s390x (3.26.0-3) ... Setting up libcomerr2:s390x (1.44.5-1) ... Setting up libasan5:s390x (9-20190102-0ubuntu2) ... Setting up libassuan0:s390x (2.5.2-1) ... Setting up libitm1:s390x (9-20190102-0ubuntu2) ... Setting up libubsan1:s390x (9-20190102-0ubuntu2) ... Setting up cpp-8 (8.2.0-13ubuntu1) ... Setting up cpp (4:9-20181126-1ubuntu3) ... Setting up libgcc-9-dev:s390x (9-20190102-0ubuntu2) ... Setting up libbinutils:s390x (2.31.1-11ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.31.1-11ubuntu1) ... Setting up libstdc++-9-dev:s390x (9-20190102-0ubuntu2) ... Setting up libgcc-8-dev:s390x (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:s390x (8.2.0-13ubuntu1) ... Setting up gcc-9 (9-20190102-0ubuntu2) ... Setting up g++-9 (9-20190102-0ubuntu2) ... Setting up gcc (4:9-20181126-1ubuntu3) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Setting up g++ (4:9-20181126-1ubuntu3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15910427 s390x disco -c chroot:build-PACKAGEBUILD-15910427 --arch=s390x --dist=disco --nolog dipy_0.14.0-1.dsc Initiating build PACKAGEBUILD-15910427 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:32:22 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-013.buildd +==============================================================================+ | dipy 0.14.0-1 (s390x) 08 Jan 2019 20:10 | +==============================================================================+ Package: dipy Version: 0.14.0-1 Source Version: 0.14.0-1 Distribution: disco Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/dipy-l4LwO1/dipy-0.14.0' with '<>' I: NOTICE: Log filtering will replace 'build/dipy-l4LwO1' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15910427/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dipy_0.14.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-oAHuY7/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-oAHuY7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-oAHuY7/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-oAHuY7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-oAHuY7/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-oAHuY7/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (226 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-oAHuY7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13390 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-numpydoc, python-nose, python-nibabel (>= 2.1.0), libgomp1 Filtered Build-Depends: debhelper (>= 9), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-numpydoc, python-nose, python-nibabel (>= 2.1.0), libgomp1 dpkg-deb: building package 'sbuild-build-depends-dipy-dummy' in '/<>/resolver-ABL3GW/apt_archive/sbuild-build-depends-dipy-dummy.deb'. Ign:1 copy:/<>/resolver-ABL3GW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ABL3GW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ABL3GW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ABL3GW/apt_archive ./ Sources [292 B] Get:5 copy:/<>/resolver-ABL3GW/apt_archive ./ Packages [611 B] Fetched 3022 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dipy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fonts-lyx gcc-7-base gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libgfortran5 libglib2.0-0 libhdf5-100 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsz2 libtool libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-backports.functools-lru-cache python-bz2file python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-h5py python-idna python-imagesize python-jinja2 python-kiwisolver python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-numpydoc python-packaging python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal sgml-base sphinx-common ttf-bitstream-vera xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-mock python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-setuptools python-pygments-doc python-pyparsing-doc python-cryptography python-openssl python-socks python-scipy-doc imagemagick-6.q16 latexmk libjs-mathjax python-sphinx-rtd-theme python-stemmer sphinx-doc texlive-fonts-recommended texlive-generic-extra python-ntlm python2-doc python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-tk python-dicom python-fuse python-enum34 python-cryptography python-ipaddress python-openssl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fonts-lyx gcc-7-base gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libgfortran5 libglib2.0-0 libhdf5-100 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsz2 libtool libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-backports.functools-lru-cache python-bz2file python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-h5py python-idna python-imagesize python-jinja2 python-kiwisolver python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-numpydoc python-packaging python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-dipy-dummy sgml-base sphinx-common ttf-bitstream-vera xml-core 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 89.2 MB of archives. After this operation, 357 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ABL3GW/apt_archive ./ sbuild-build-depends-dipy-dummy 0.invalid.0 [944 B] Get:2 http://ftpmaster.internal/ubuntu disco/main s390x libbsd0 s390x 0.9.1-1 [43.1 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x gcc-7-base s390x 7.4.0-2ubuntu1 [18.8 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main s390x libgfortran4 s390x 7.4.0-2ubuntu1 [275 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main s390x libgfortran5 s390x 9-20190102-0ubuntu2 [332 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main s390x libpipeline1 s390x 1.5.0-2 [24.4 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main s390x man-db s390x 2.8.5-1 [1087 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main s390x libpython2.7-minimal s390x 2.7.15-5 [335 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main s390x python2.7-minimal s390x 2.7.15-5 [1172 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main s390x python2-minimal s390x 2.7.15-3 [28.1 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main s390x python-minimal s390x 2.7.15-3 [5996 B] Get:14 http://ftpmaster.internal/ubuntu disco/main s390x mime-support all 3.60ubuntu1 [30.1 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main s390x libexpat1 s390x 2.2.6-1 [82.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main s390x libpython2.7-stdlib s390x 2.7.15-5 [1855 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main s390x python2.7 s390x 2.7.15-5 [239 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main s390x libpython2-stdlib s390x 2.7.15-3 [7728 B] Get:19 http://ftpmaster.internal/ubuntu disco/main s390x libpython-stdlib s390x 2.7.15-3 [5828 B] Get:20 http://ftpmaster.internal/ubuntu disco/main s390x python2 s390x 2.7.15-3 [26.5 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main s390x python s390x 2.7.15-3 [7832 B] Get:22 http://ftpmaster.internal/ubuntu disco/main s390x sgml-base all 1.29 [12.3 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main s390x libmagic-mgc s390x 1:5.34-2 [197 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main s390x libmagic1 s390x 1:5.34-2 [69.0 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main s390x file s390x 1:5.34-2 [22.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main s390x libelf1 s390x 0.175-1 [41.4 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main s390x libglib2.0-0 s390x 2.58.1-2 [1085 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main s390x libicu63 s390x 63.1-5 [8033 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main s390x libxml2 s390x 2.9.4+dfsg1-7ubuntu3 [553 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main s390x gettext-base s390x 0.19.8.1-9 [48.1 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main s390x m4 s390x 1.4.18-2 [194 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main s390x autoconf all 2.69-11 [322 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main s390x automake all 1:1.16.1-4 [522 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main s390x autopoint all 0.19.8.1-9 [412 kB] Get:37 http://ftpmaster.internal/ubuntu disco/universe s390x cython s390x 0.28.4-1build1 [1862 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main s390x libtool all 2.4.6-6 [195 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main s390x dh-autoreconf all 19 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main s390x libarchive-zip-perl all 1.64-1 [84.9 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main s390x libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main s390x dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:43 http://ftpmaster.internal/ubuntu disco/main s390x dwz s390x 0.12-3 [73.6 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main s390x libcroco3 s390x 0.6.12-3 [74.0 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main s390x gettext s390x 0.19.8.1-9 [858 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main s390x po-debconf all 1.0.21 [233 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main s390x debhelper all 11.5.3ubuntu1 [888 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main s390x xml-core all 0.18 [21.3 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main s390x docutils-common all 0.14+dfsg-3 [156 kB] Get:51 http://ftpmaster.internal/ubuntu disco/universe s390x fonts-lyx all 2.3.2-1 [154 kB] Get:52 http://ftpmaster.internal/ubuntu disco/universe s390x libaec0 s390x 1.0.2-1 [19.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main s390x libblas3 s390x 3.8.0-2 [116 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main s390x libexpat1-dev s390x 2.2.6-1 [127 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main s390x libfreetype6 s390x 2.8.1-2ubuntu2 [314 kB] Get:56 http://ftpmaster.internal/ubuntu disco/universe s390x libsz2 s390x 1.0.2-1 [5084 B] Get:57 http://ftpmaster.internal/ubuntu disco/universe s390x libhdf5-100 s390x 1.10.0-patch1+docs-4build2 [1070 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main s390x libjs-jquery all 3.2.1-1 [152 kB] Get:59 http://ftpmaster.internal/ubuntu disco/universe s390x libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main s390x libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main s390x libjs-sphinxdoc all 1.7.9-1 [92.3 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main s390x liblapack3 s390x 3.8.0-2 [1611 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main s390x libpython2.7 s390x 2.7.15-5 [964 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main s390x libpython2.7-dev s390x 2.7.15-5 [31.3 MB] Get:65 http://ftpmaster.internal/ubuntu disco/main s390x libpython2-dev s390x 2.7.15-3 [7784 B] Get:66 http://ftpmaster.internal/ubuntu disco/main s390x libpython-dev s390x 2.7.15-3 [5884 B] Get:67 http://ftpmaster.internal/ubuntu disco/main s390x libpython-all-dev s390x 2.7.15-3 [1092 B] Get:68 http://ftpmaster.internal/ubuntu disco/main s390x python-all s390x 2.7.15-3 [1072 B] Get:69 http://ftpmaster.internal/ubuntu disco/main s390x python2.7-dev s390x 2.7.15-5 [280 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main s390x python2-dev s390x 2.7.15-3 [1240 B] Get:71 http://ftpmaster.internal/ubuntu disco/main s390x python-dev s390x 2.7.15-3 [1220 B] Get:72 http://ftpmaster.internal/ubuntu disco/main s390x python-all-dev s390x 2.7.15-3 [1096 B] Get:73 http://ftpmaster.internal/ubuntu disco/main s390x python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main s390x python-pkg-resources all 40.6.2-1 [129 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main s390x python-tz all 2018.7-1 [31.3 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main s390x python-babel all 2.6.0+dfsg.1-1 [84.1 kB] Get:77 http://ftpmaster.internal/ubuntu disco/universe s390x python-backports.functools-lru-cache all 1.5-1 [6172 B] Get:78 http://ftpmaster.internal/ubuntu disco/universe s390x python-bz2file all 0.98-2 [7904 B] Get:79 http://ftpmaster.internal/ubuntu disco/main s390x python-certifi all 2018.8.24-1 [140 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main s390x python-chardet all 3.0.4-2 [80.9 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main s390x python-six all 1.11.0-2 [11.3 kB] Get:82 http://ftpmaster.internal/ubuntu disco/universe s390x python-cycler all 0.10.0-1 [7520 B] Get:83 http://ftpmaster.internal/ubuntu disco/main s390x python-dateutil all 2.7.3-1 [75.8 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main s390x python-decorator all 4.3.0-1.1 [9524 B] Get:85 http://ftpmaster.internal/ubuntu disco/main s390x python-roman all 2.0.0-3 [8548 B] Get:86 http://ftpmaster.internal/ubuntu disco/main s390x python-docutils all 0.14+dfsg-3 [365 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main s390x python-numpy s390x 1:1.14.5-1ubuntu8 [1847 kB] Get:88 http://ftpmaster.internal/ubuntu disco/universe s390x python-h5py s390x 2.8.0-1build1 [598 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main s390x python-idna all 2.6-1 [32.4 kB] Get:90 http://ftpmaster.internal/ubuntu disco/universe s390x python-imagesize all 1.0.0-1 [4928 B] Get:91 http://ftpmaster.internal/ubuntu disco/main s390x python-markupsafe s390x 1.1.0-1 [12.9 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main s390x python-jinja2 all 2.10-1 [94.6 kB] Get:93 http://ftpmaster.internal/ubuntu disco/universe s390x python-kiwisolver s390x 1.0.1-2build2 [55.0 kB] Get:94 http://ftpmaster.internal/ubuntu disco/universe s390x ttf-bitstream-vera all 1.10-8 [352 kB] Get:95 http://ftpmaster.internal/ubuntu disco/universe s390x python-matplotlib-data all 2.2.2-4ubuntu2 [3775 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main s390x python-pyparsing all 2.2.0+dfsg1-2 [52.1 kB] Get:97 http://ftpmaster.internal/ubuntu disco/universe s390x python-subprocess32 s390x 3.5.3-1 [26.4 kB] Get:98 http://ftpmaster.internal/ubuntu disco/universe s390x python-matplotlib s390x 2.2.2-4ubuntu2 [4175 kB] Get:99 http://ftpmaster.internal/ubuntu disco/universe s390x python-nose all 1.3.7-4 [116 kB] Get:100 http://ftpmaster.internal/ubuntu disco/universe s390x python-typing all 3.6.6-1 [22.8 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main s390x sphinx-common all 1.7.9-1 [437 kB] Get:102 http://ftpmaster.internal/ubuntu disco/universe s390x python-alabaster all 0.7.8-1 [18.4 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main s390x python-packaging all 18.0-1 [18.2 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main s390x python-pygments all 2.2.0+dfsg-2 [576 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main s390x python-urllib3 all 1.24-1 [83.3 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main s390x python-requests all 2.20.0-2 [46.9 kB] Get:107 http://ftpmaster.internal/ubuntu disco/universe s390x python-sphinx all 1.7.9-1 [451 kB] Get:108 http://ftpmaster.internal/ubuntu disco/universe s390x python-numpydoc all 0.7.0-1 [18.3 kB] Get:109 http://ftpmaster.internal/ubuntu disco/universe s390x python-scipy s390x 1.1.0-2 [9226 kB] Get:110 http://ftpmaster.internal/ubuntu disco/universe s390x python-nibabel all 2.3.2-1 [2592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.2 MB in 2s (48.1 MB/s) Selecting previously unselected package libbsd0:s390x. 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Setting up autotools-dev (20180224.1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up sphinx-common (1.7.9-1) ... Setting up libexpat1-dev:s390x (2.2.6-1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up xml-core (0.18) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgfortran5:s390x (9-20190102-0ubuntu2) ... Setting up libpython2.7-stdlib:s390x (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsz2:s390x (1.0.2-1) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libhdf5-100:s390x (1.10.0-patch1+docs-4build2) ... Setting up python-matplotlib-data (2.2.2-4ubuntu2) ... Setting up libgfortran4:s390x (7.4.0-2ubuntu1) ... Setting up gettext (0.19.8.1-9) ... Setting up liblapack3:s390x (3.8.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up python2.7 (2.7.15-5) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:s390x (2.7.15-5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:s390x (2.7.15-3) ... Setting up libpython2.7-dev:s390x (2.7.15-5) ... Setting up python2.7-dev (2.7.15-5) ... Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:s390x (2.7.15-3) ... Setting up libpython-stdlib:s390x (2.7.15-3) ... Setting up python2-dev (2.7.15-3) ... Setting up python (2.7.15-3) ... Setting up python-typing (3.6.6-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-idna (2.6-1) ... Setting up libpython-dev:s390x (2.7.15-3) ... Setting up python-backports.functools-lru-cache (1.5-1) ... Setting up python-dev (2.7.15-3) ... Setting up python-certifi (2018.8.24-1) ... Setting up python-tz (2018.7-1) ... Setting up libpython-all-dev:s390x (2.7.15-3) ... Setting up python-imagesize (1.0.0-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (40.6.2-1) ... Setting up python-roman (2.0.0-3) ... Setting up python-markupsafe (1.1.0-1) ... Setting up python-numpy (1:1.14.5-1ubuntu8) ... Setting up cython (0.28.4-1build1) ... Setting up python-six (1.11.0-2) ... Setting up python-pygments (2.2.0+dfsg-2) ... Setting up python-packaging (18.0-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up python-bz2file (0.98-2) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python-nose (1.3.7-4) ... Setting up python-all (2.7.15-3) ... Setting up python-urllib3 (1.24-1) ... Setting up python-h5py (2.8.0-1build1) ... Setting up python-chardet (3.0.4-2) ... Setting up python-kiwisolver (1.0.1-2build2) ... Setting up python-scipy (1.1.0-2) ... Setting up python-jinja2 (2.10-1) ... Setting up python-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-cycler (0.10.0-1) ... Setting up python-dateutil (2.7.3-1) ... Setting up python-all-dev (2.7.15-3) ... Setting up python-requests (2.20.0-2) ... Setting up python-nibabel (2.3.2-1) ... Setting up python-matplotlib (2.2.2-4ubuntu2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-3) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.14+dfsg-3) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.7.9-1) ... update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python-numpydoc (0.7.0-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (11.5.3ubuntu1) ... Setting up sbuild-build-depends-dipy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic s390x (s390x) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 g++-9_9-20190102-0ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-9_9-20190102-0ubuntu2 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++-9-dev_9-20190102-0ubuntu2 libstdc++6_9-20190102-0ubuntu2 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-s390x-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 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python-all_2.7.15-3 python-all-dev_2.7.15-3 python-babel_2.6.0+dfsg.1-1 python-babel-localedata_2.6.0+dfsg.1-1 python-backports.functools-lru-cache_1.5-1 python-bz2file_0.98-2 python-certifi_2018.8.24-1 python-chardet_3.0.4-2 python-cycler_0.10.0-1 python-dateutil_2.7.3-1 python-decorator_4.3.0-1.1 python-dev_2.7.15-3 python-docutils_0.14+dfsg-3 python-h5py_2.8.0-1build1 python-idna_2.6-1 python-imagesize_1.0.0-1 python-jinja2_2.10-1 python-kiwisolver_1.0.1-2build2 python-markupsafe_1.1.0-1 python-matplotlib_2.2.2-4ubuntu2 python-matplotlib-data_2.2.2-4ubuntu2 python-minimal_2.7.15-3 python-nibabel_2.3.2-1 python-nose_1.3.7-4 python-numpy_1:1.14.5-1ubuntu8 python-numpydoc_0.7.0-1 python-packaging_18.0-1 python-pkg-resources_40.6.2-1 python-pygments_2.2.0+dfsg-2 python-pyparsing_2.2.0+dfsg1-2 python-requests_2.20.0-2 python-roman_2.0.0-3 python-scipy_1.1.0-2 python-six_1.11.0-2 python-sphinx_1.7.9-1 python-subprocess32_3.5.3-1 python-typing_3.6.6-1 python-tz_2018.7-1 python-urllib3_1.24-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dipy-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.9-1 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 ttf-bitstream-vera_1.10-8 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue May 15 15:20:59 2018 UTC gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dipy_0.14.0-1.dsc dpkg-source: info: extracting dipy in dipy-0.14.0 dpkg-source: info: unpacking dipy_0.14.0.orig.tar.gz dpkg-source: info: unpacking dipy_0.14.0.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.14.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15910427 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15910427 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15910427 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 0.14.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from dipy-0.14.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ fakeroot debian/rules clean dh clean --buildsystem=python_distutils --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find dipy -iname *.c | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f rm -f pyx-stamps dh_auto_clean override_dh_auto_clean dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_clean: This feature will be removed in compat 12. python setup.py clean -a running clean 'build/lib.linux-s390x-2.7' does not exist -- can't clean it 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/<>/doc' rm -rf reference/*.rst cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[2]: [Makefile:32: clean] Error 1 (ignored) make[2]: Leaving directory '/<>/doc' dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --buildsystem=python_distutils --with python2 dh_update_autotools_config -a -O--buildsystem=python_distutils dh_auto_configure -a -O--buildsystem=python_distutils dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_configure: This feature will be removed in compat 12. debian/rules override_dh_auto_build make[1]: Entering directory '/<>' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.25.1" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : dh_auto_build dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. python setup.py build --force running build running build_py creating build creating build/lib.linux-s390x-2.7 creating build/lib.linux-s390x-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-s390x-2.7/dipy copying dipy/info.py -> build/lib.linux-s390x-2.7/dipy copying dipy/__init__.py -> build/lib.linux-s390x-2.7/dipy creating build/lib.linux-s390x-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-s390x-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.linux-s390x-2.7/dipy/tests creating build/lib.linux-s390x-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-s390x-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.linux-s390x-2.7/dipy/align creating build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_whole_brain_slr.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.linux-s390x-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.linux-s390x-2.7/dipy/align/tests creating build/lib.linux-s390x-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/wavelet.py -> build/lib.linux-s390x-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-s390x-2.7/dipy/core creating build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-s390x-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-s390x-2.7/dipy/core/tests creating build/lib.linux-s390x-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.linux-s390x-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.linux-s390x-2.7/dipy/direction creating build/lib.linux-s390x-2.7/dipy/direction/tests copying dipy/direction/tests/test_bootstrap_direction_getter.py -> build/lib.linux-s390x-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.linux-s390x-2.7/dipy/direction/tests copying dipy/direction/tests/test_pmf.py -> build/lib.linux-s390x-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.linux-s390x-2.7/dipy/direction/tests creating build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-s390x-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-s390x-2.7/dipy/tracking creating build/lib.linux-s390x-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.linux-s390x-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.linux-s390x-2.7/dipy/tracking/local creating build/lib.linux-s390x-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.linux-s390x-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tracking.py -> build/lib.linux-s390x-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_interpolation.py -> build/lib.linux-s390x-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/tracking/local/tests creating build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_fbc.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_localtrack.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-s390x-2.7/dipy/tracking/tests creating build/lib.linux-s390x-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.linux-s390x-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.linux-s390x-2.7/dipy/tracking/benchmarks creating build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/fwdti.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/ivim.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/forecast.py -> build/lib.linux-s390x-2.7/dipy/reconst copying dipy/reconst/dki_micro.py -> build/lib.linux-s390x-2.7/dipy/reconst creating build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-s390x-2.7/dipy/reconst/benchmarks creating build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki_micro.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_forecast.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_fwdti.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_ivim.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.linux-s390x-2.7/dipy/reconst/tests creating build/lib.linux-s390x-2.7/dipy/io copying dipy/io/peaks.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/streamline.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/image.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/vtk.py -> build/lib.linux-s390x-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-s390x-2.7/dipy/io creating build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_io_peaks.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_streamline.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-s390x-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/io/tests creating build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/widget.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/actor.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/interactor.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/window.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/ui.py -> build/lib.linux-s390x-2.7/dipy/viz copying dipy/viz/utils.py -> build/lib.linux-s390x-2.7/dipy/viz creating build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_interactor.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_ui.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_actors.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_widgets.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_utils.py -> build/lib.linux-s390x-2.7/dipy/viz/tests copying dipy/viz/tests/test_window.py -> build/lib.linux-s390x-2.7/dipy/viz/tests creating build/lib.linux-s390x-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-s390x-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.linux-s390x-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-s390x-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-s390x-2.7/dipy/testing creating build/lib.linux-s390x-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.linux-s390x-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-s390x-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/testing/tests creating build/lib.linux-s390x-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-s390x-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-s390x-2.7/dipy/boots creating build/lib.linux-s390x-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-s390x-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-s390x-2.7/dipy/data creating build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-s390x-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-s390x-2.7/dipy/utils package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) creating build/lib.linux-s390x-2.7/dipy/data/tests copying dipy/data/tests/test_data.py -> build/lib.linux-s390x-2.7/dipy/data/tests copying dipy/data/tests/test_fetcher.py -> build/lib.linux-s390x-2.7/dipy/data/tests creating build/lib.linux-s390x-2.7/dipy/utils/tests copying dipy/utils/tests/test_omp.py -> build/lib.linux-s390x-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-s390x-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.linux-s390x-2.7/dipy/utils/tests creating build/lib.linux-s390x-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-s390x-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-s390x-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.linux-s390x-2.7/dipy/fixes creating build/lib.linux-s390x-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-s390x-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-s390x-2.7/dipy/external creating build/lib.linux-s390x-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/external/tests creating build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/tissue.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/bundles.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-s390x-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-s390x-2.7/dipy/segment creating build/lib.linux-s390x-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.linux-s390x-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.linux-s390x-2.7/dipy/segment/benchmarks creating build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_mrf.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_adjustment.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_qbx.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_rb.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.linux-s390x-2.7/dipy/segment/tests creating build/lib.linux-s390x-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-s390x-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-s390x-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-s390x-2.7/dipy/sims creating build/lib.linux-s390x-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-s390x-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-s390x-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/sims/tests creating build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/localpca.py -> build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/adaptive_soft_matching.py -> build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.linux-s390x-2.7/dipy/denoise copying dipy/denoise/non_local_means.py -> build/lib.linux-s390x-2.7/dipy/denoise creating build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_ascm.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_lpca.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_non_local_means.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.linux-s390x-2.7/dipy/denoise/tests creating build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/multi_io.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/mask.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/flow_runner.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/denoise.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/align.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/io.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/workflow.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/combined_workflow.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.linux-s390x-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.linux-s390x-2.7/dipy/workflows creating build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_csa_csd.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_mapmri.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_io.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_tracking.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_masking.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dki.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/workflow_tests_utils.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dti.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_align.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_workflow.py -> build/lib.linux-s390x-2.7/dipy/workflows/tests creating build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/repulsion200.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/ascm_out_test.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_custom_interactor_style_events.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_text_block.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_button_and_slider_widgets.log.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.pkl -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.linux-s390x-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.linux-s390x-2.7/dipy/data/files package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse s390x-linux-gnu-gcc: error: unrecognized command line option ‘-msse2’ s390x-linux-gnu-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 test.o -o libtestlib.so -fopenmp cythoning dipy/direction/pmf.pyx to dipy/direction/pmf.c building 'dipy.direction.pmf' extension creating build/temp.linux-s390x-2.7 creating build/temp.linux-s390x-2.7/dipy creating build/temp.linux-s390x-2.7/dipy/direction s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/pmf.c -o build/temp.linux-s390x-2.7/dipy/direction/pmf.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/pmf.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/direction/pmf.o -o build/lib.linux-s390x-2.7/dipy/direction/pmf.so -fopenmp cythoning dipy/direction/probabilistic_direction_getter.pyx to dipy/direction/probabilistic_direction_getter.c building 'dipy.direction.probabilistic_direction_getter' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/probabilistic_direction_getter.c -o build/temp.linux-s390x-2.7/dipy/direction/probabilistic_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/probabilistic_direction_getter.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/direction/probabilistic_direction_getter.o -o build/lib.linux-s390x-2.7/dipy/direction/probabilistic_direction_getter.so -fopenmp cythoning dipy/direction/closest_peak_direction_getter.pyx to dipy/direction/closest_peak_direction_getter.c building 'dipy.direction.closest_peak_direction_getter' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/closest_peak_direction_getter.c -o build/temp.linux-s390x-2.7/dipy/direction/closest_peak_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/closest_peak_direction_getter.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/direction/closest_peak_direction_getter.o -o build/lib.linux-s390x-2.7/dipy/direction/closest_peak_direction_getter.so -fopenmp cythoning dipy/direction/bootstrap_direction_getter.pyx to dipy/direction/bootstrap_direction_getter.c building 'dipy.direction.bootstrap_direction_getter' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/bootstrap_direction_getter.c -o build/temp.linux-s390x-2.7/dipy/direction/bootstrap_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/bootstrap_direction_getter.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/direction/bootstrap_direction_getter.o -o build/lib.linux-s390x-2.7/dipy/direction/bootstrap_direction_getter.so -fopenmp cythoning dipy/reconst/peak_direction_getter.pyx to dipy/reconst/peak_direction_getter.c warning: dipy/reconst/peak_direction_getter.pyx:57:4: Overriding cdef method with def method. building 'dipy.reconst.peak_direction_getter' extension creating build/temp.linux-s390x-2.7/dipy/reconst s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/peak_direction_getter.c -o build/temp.linux-s390x-2.7/dipy/reconst/peak_direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/peak_direction_getter.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ dipy/reconst/peak_direction_getter.c: In function ‘__pyx_pw_4dipy_7reconst_21peak_direction_getter_30PeaksAndMetricsDirectionGetter_5initial_direction’: dipy/reconst/peak_direction_getter.c:3508:3: warning: ‘__pyx_v_numpeaks’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3508 | for (__pyx_t_18 = 0; __pyx_t_18 < __pyx_t_17; __pyx_t_18+=1) { | ^~~ dipy/reconst/peak_direction_getter.c:3207:12: note: ‘__pyx_v_numpeaks’ was declared here 3207 | npy_intp __pyx_v_numpeaks; | ^~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/reconst/peak_direction_getter.o -o build/lib.linux-s390x-2.7/dipy/reconst/peak_direction_getter.so -fopenmp cythoning dipy/reconst/recspeed.pyx to dipy/reconst/recspeed.c warning: dipy/reconst/recspeed.pyx:570:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:59: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.reconst.recspeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-s390x-2.7/dipy/reconst/recspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/reconst/recspeed.o -o build/lib.linux-s390x-2.7/dipy/reconst/recspeed.so -fopenmp cythoning dipy/reconst/vec_val_sum.pyx to dipy/reconst/vec_val_sum.c building 'dipy.reconst.vec_val_sum' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-s390x-2.7/dipy/reconst/vec_val_sum.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-s390x-2.7/dipy/reconst/vec_val_sum.so -fopenmp cythoning dipy/reconst/quick_squash.pyx to dipy/reconst/quick_squash.c building 'dipy.reconst.quick_squash' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-s390x-2.7/dipy/reconst/quick_squash.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-s390x-2.7/dipy/reconst/quick_squash.so -fopenmp cythoning dipy/tracking/distances.pyx to dipy/tracking/distances.c warning: dipy/tracking/distances.pyx:246:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:53: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:42: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:49: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:56: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:63: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:43: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1536:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.distances' extension creating build/temp.linux-s390x-2.7/dipy/tracking s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-s390x-2.7/dipy/tracking/distances.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_f_4dipy_8tracking_9distances_czhang’: dipy/tracking/distances.c:8821:10: warning: ‘__pyx_v_dist_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8821 | return __pyx_r; | ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_pf_4dipy_8tracking_9distances_14cut_plane.isra.0’: dipy/tracking/distances.c:3263:16: warning: ‘*((void *)&__pyx_v_normal+8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3263 | __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4649:9: note: ‘*((void *)&__pyx_v_normal+8)’ was declared here 4649 | float __pyx_v_normal[3]; | ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3263:16: warning: ‘*((void *)&__pyx_v_normal+4)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3263 | __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4649:9: note: ‘*((void *)&__pyx_v_normal+4)’ was declared here 4649 | float __pyx_v_normal[3]; | ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3263:16: warning: ‘__pyx_v_normal’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3263 | __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4649:9: note: ‘__pyx_v_normal’ was declared here 4649 | float __pyx_v_normal[3]; | ^~~~~~~~~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/distances.o -o build/lib.linux-s390x-2.7/dipy/tracking/distances.so -fopenmp cythoning dipy/tracking/streamlinespeed.pyx to dipy/tracking/streamlinespeed.c building 'dipy.tracking.streamlinespeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/streamlinespeed.c -o build/temp.linux-s390x-2.7/dipy/tracking/streamlinespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/streamlinespeed.c:569: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/streamlinespeed.o -o build/lib.linux-s390x-2.7/dipy/tracking/streamlinespeed.so -fopenmp cythoning dipy/tracking/local/localtrack.pyx to dipy/tracking/local/localtrack.c building 'dipy.tracking.local.localtrack' extension creating build/temp.linux-s390x-2.7/dipy/tracking/local s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/localtrack.c -o build/temp.linux-s390x-2.7/dipy/tracking/local/localtrack.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/localtrack.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/local/localtrack.o -o build/lib.linux-s390x-2.7/dipy/tracking/local/localtrack.so -fopenmp cythoning dipy/tracking/local/direction_getter.pyx to dipy/tracking/local/direction_getter.c building 'dipy.tracking.local.direction_getter' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/direction_getter.c -o build/temp.linux-s390x-2.7/dipy/tracking/local/direction_getter.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/direction_getter.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/local/direction_getter.o -o build/lib.linux-s390x-2.7/dipy/tracking/local/direction_getter.so -fopenmp cythoning dipy/tracking/local/tissue_classifier.pyx to dipy/tracking/local/tissue_classifier.c building 'dipy.tracking.local.tissue_classifier' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/tissue_classifier.c -o build/temp.linux-s390x-2.7/dipy/tracking/local/tissue_classifier.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/tissue_classifier.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ dipy/tracking/local/tissue_classifier.c: In function ‘__pyx_f_4dipy_8tracking_5local_17tissue_classifier_27ConstrainedTissueClassifier_get_exclude_c’: dipy/tracking/local/tissue_classifier.c:5126:3: warning: label ‘__pyx_L1_error’ defined but not used [-Wunused-label] 5126 | __pyx_L1_error:; | ^~~~~~~~~~~~~~ dipy/tracking/local/tissue_classifier.c: In function ‘__pyx_f_4dipy_8tracking_5local_17tissue_classifier_27ConstrainedTissueClassifier_get_include_c’: dipy/tracking/local/tissue_classifier.c:5439:3: warning: label ‘__pyx_L1_error’ defined but not used [-Wunused-label] 5439 | __pyx_L1_error:; | ^~~~~~~~~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/local/tissue_classifier.o -o build/lib.linux-s390x-2.7/dipy/tracking/local/tissue_classifier.so -fopenmp cythoning dipy/tracking/local/interpolation.pyx to dipy/tracking/local/interpolation.c building 'dipy.tracking.local.interpolation' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/interpolation.c -o build/temp.linux-s390x-2.7/dipy/tracking/local/interpolation.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/interpolation.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/local/interpolation.o -o build/lib.linux-s390x-2.7/dipy/tracking/local/interpolation.so -fopenmp cythoning dipy/tracking/vox2track.pyx to dipy/tracking/vox2track.c building 'dipy.tracking.vox2track' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-s390x-2.7/dipy/tracking/vox2track.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:569: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/vox2track.o -o build/lib.linux-s390x-2.7/dipy/tracking/vox2track.so -fopenmp cythoning dipy/tracking/propspeed.pyx to dipy/tracking/propspeed.c warning: dipy/tracking/propspeed.pyx:134:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:134:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:135:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:45: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:370:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.propspeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-s390x-2.7/dipy/tracking/propspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/propspeed.o -o build/lib.linux-s390x-2.7/dipy/tracking/propspeed.so -fopenmp cythoning dipy/tracking/fbcmeasures.pyx to dipy/tracking/fbcmeasures.c building 'dipy.tracking.fbcmeasures' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/fbcmeasures.c -o build/temp.linux-s390x-2.7/dipy/tracking/fbcmeasures.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/fbcmeasures.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/tracking/fbcmeasures.o -o build/lib.linux-s390x-2.7/dipy/tracking/fbcmeasures.so -fopenmp cythoning dipy/segment/cythonutils.pyx to dipy/segment/cythonutils.c building 'dipy.segment.cythonutils' extension creating build/temp.linux-s390x-2.7/dipy/segment s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/cythonutils.c -o build/temp.linux-s390x-2.7/dipy/segment/cythonutils.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/cythonutils.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/cythonutils.o -o build/lib.linux-s390x-2.7/dipy/segment/cythonutils.so -fopenmp cythoning dipy/segment/featurespeed.pyx to dipy/segment/featurespeed.c building 'dipy.segment.featurespeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/featurespeed.c -o build/temp.linux-s390x-2.7/dipy/segment/featurespeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/featurespeed.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/featurespeed.o -o build/lib.linux-s390x-2.7/dipy/segment/featurespeed.so -fopenmp cythoning dipy/segment/metricspeed.pyx to dipy/segment/metricspeed.c building 'dipy.segment.metricspeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/metricspeed.c -o build/temp.linux-s390x-2.7/dipy/segment/metricspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/metricspeed.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/metricspeed.o -o build/lib.linux-s390x-2.7/dipy/segment/metricspeed.so -fopenmp cythoning dipy/segment/clusteringspeed.pyx to dipy/segment/clusteringspeed.c building 'dipy.segment.clusteringspeed' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clusteringspeed.c -o build/temp.linux-s390x-2.7/dipy/segment/clusteringspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clusteringspeed.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/clusteringspeed.o -o build/lib.linux-s390x-2.7/dipy/segment/clusteringspeed.so -fopenmp cythoning dipy/segment/clustering_algorithms.pyx to dipy/segment/clustering_algorithms.c building 'dipy.segment.clustering_algorithms' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clustering_algorithms.c -o build/temp.linux-s390x-2.7/dipy/segment/clustering_algorithms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clustering_algorithms.c:568: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/clustering_algorithms.o -o build/lib.linux-s390x-2.7/dipy/segment/clustering_algorithms.so -fopenmp cythoning dipy/segment/mrf.pyx to dipy/segment/mrf.c building 'dipy.segment.mrf' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/mrf.c -o build/temp.linux-s390x-2.7/dipy/segment/mrf.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/mrf.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/segment/mrf.o -o build/lib.linux-s390x-2.7/dipy/segment/mrf.so -fopenmp cythoning dipy/denoise/denspeed.pyx to dipy/denoise/denspeed.c building 'dipy.denoise.denspeed' extension creating build/temp.linux-s390x-2.7/dipy/denoise s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/denspeed.c -o build/temp.linux-s390x-2.7/dipy/denoise/denspeed.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/denspeed.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/denoise/denspeed.o -o build/lib.linux-s390x-2.7/dipy/denoise/denspeed.so -fopenmp cythoning dipy/denoise/pca_noise_estimate.pyx to dipy/denoise/pca_noise_estimate.c building 'dipy.denoise.pca_noise_estimate' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/pca_noise_estimate.c -o build/temp.linux-s390x-2.7/dipy/denoise/pca_noise_estimate.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/pca_noise_estimate.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ In file included from /usr/include/python2.7/Python.h:83, from dipy/denoise/pca_noise_estimate.c:4: dipy/denoise/pca_noise_estimate.c: In function ‘initpca_noise_estimate’: /usr/include/python2.7/object.h:769:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 769 | ((PyObject*)(op))->ob_refcnt++) | ~^~~~~~~~~~~~~~~~ dipy/denoise/pca_noise_estimate.c:1335:27: note: in expansion of macro ‘Py_INCREF’ 1335 | #define __Pyx_INCREF(r) Py_INCREF(r) | ^~~~~~~~~ dipy/denoise/pca_noise_estimate.c:22290:7: note: in expansion of macro ‘__Pyx_INCREF’ 22290 | __Pyx_INCREF(Py_False); | ^~~~~~~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/denoise/pca_noise_estimate.o -o build/lib.linux-s390x-2.7/dipy/denoise/pca_noise_estimate.so -fopenmp cythoning dipy/denoise/nlmeans_block.pyx to dipy/denoise/nlmeans_block.c building 'dipy.denoise.nlmeans_block' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/nlmeans_block.c -o build/temp.linux-s390x-2.7/dipy/denoise/nlmeans_block.o -fopenmp s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/denoise/nlmeans_block.o -o build/lib.linux-s390x-2.7/dipy/denoise/nlmeans_block.so -fopenmp cythoning dipy/denoise/enhancement_kernel.pyx to dipy/denoise/enhancement_kernel.c building 'dipy.denoise.enhancement_kernel' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/enhancement_kernel.c -o build/temp.linux-s390x-2.7/dipy/denoise/enhancement_kernel.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/enhancement_kernel.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/denoise/enhancement_kernel.o -o build/lib.linux-s390x-2.7/dipy/denoise/enhancement_kernel.so -fopenmp cythoning dipy/denoise/shift_twist_convolution.pyx to dipy/denoise/shift_twist_convolution.c building 'dipy.denoise.shift_twist_convolution' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/shift_twist_convolution.c -o build/temp.linux-s390x-2.7/dipy/denoise/shift_twist_convolution.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/shift_twist_convolution.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/denoise/shift_twist_convolution.o -o build/lib.linux-s390x-2.7/dipy/denoise/shift_twist_convolution.so -fopenmp cythoning dipy/align/vector_fields.pyx to dipy/align/vector_fields.c building 'dipy.align.vector_fields' extension creating build/temp.linux-s390x-2.7/dipy/align s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/vector_fields.c -o build/temp.linux-s390x-2.7/dipy/align/vector_fields.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/vector_fields.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/vector_fields.o -o build/lib.linux-s390x-2.7/dipy/align/vector_fields.so -fopenmp cythoning dipy/align/sumsqdiff.pyx to dipy/align/sumsqdiff.c building 'dipy.align.sumsqdiff' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/sumsqdiff.c -o build/temp.linux-s390x-2.7/dipy/align/sumsqdiff.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/sumsqdiff.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/sumsqdiff.o -o build/lib.linux-s390x-2.7/dipy/align/sumsqdiff.so -fopenmp cythoning dipy/align/expectmax.pyx to dipy/align/expectmax.c building 'dipy.align.expectmax' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/expectmax.c -o build/temp.linux-s390x-2.7/dipy/align/expectmax.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/expectmax.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/expectmax.o -o build/lib.linux-s390x-2.7/dipy/align/expectmax.so -fopenmp cythoning dipy/align/crosscorr.pyx to dipy/align/crosscorr.c building 'dipy.align.crosscorr' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/crosscorr.c -o build/temp.linux-s390x-2.7/dipy/align/crosscorr.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/crosscorr.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/crosscorr.o -o build/lib.linux-s390x-2.7/dipy/align/crosscorr.so -fopenmp cythoning dipy/align/bundlemin.pyx to dipy/align/bundlemin.c warning: dipy/align/bundlemin.pyx:380:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:380:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:380:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.align.bundlemin' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/bundlemin.c -o build/temp.linux-s390x-2.7/dipy/align/bundlemin.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/bundlemin.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/bundlemin.o -o build/lib.linux-s390x-2.7/dipy/align/bundlemin.so -fopenmp cythoning dipy/align/transforms.pyx to dipy/align/transforms.c building 'dipy.align.transforms' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/transforms.c -o build/temp.linux-s390x-2.7/dipy/align/transforms.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/transforms.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/transforms.o -o build/lib.linux-s390x-2.7/dipy/align/transforms.so -fopenmp cythoning dipy/align/parzenhist.pyx to dipy/align/parzenhist.c building 'dipy.align.parzenhist' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/parzenhist.c -o build/temp.linux-s390x-2.7/dipy/align/parzenhist.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/parzenhist.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/align/parzenhist.o -o build/lib.linux-s390x-2.7/dipy/align/parzenhist.so -fopenmp cythoning dipy/utils/omp.pyx to dipy/utils/omp.c building 'dipy.utils.omp' extension creating build/temp.linux-s390x-2.7/dipy/utils s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/utils/omp.c -o build/temp.linux-s390x-2.7/dipy/utils/omp.o -fopenmp s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/utils/omp.o -o build/lib.linux-s390x-2.7/dipy/utils/omp.so -fopenmp cythoning dipy/utils/fast_numpy.pyx to dipy/utils/fast_numpy.c building 'dipy.utils.fast_numpy' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/utils/fast_numpy.c -o build/temp.linux-s390x-2.7/dipy/utils/fast_numpy.o -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/utils/fast_numpy.c:567: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 15 | #warning "Using deprecated NumPy API, disable it by " \ | ^~~~~~~ s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/dipy/utils/fast_numpy.o -o build/lib.linux-s390x-2.7/dipy/utils/fast_numpy.so -fopenmp running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_fit_dti -> build/scripts-2.7 copying and adjusting bin/dipy_fit_mapmri -> build/scripts-2.7 copying and adjusting bin/dipy_nlmeans -> build/scripts-2.7 copying and adjusting bin/dipy_reslice -> build/scripts-2.7 copying and adjusting bin/dipy_info -> build/scripts-2.7 copying and adjusting bin/dipy_track_det -> build/scripts-2.7 copying and adjusting bin/dipy_fit_csd -> build/scripts-2.7 copying and adjusting bin/dipy_fit_csa -> build/scripts-2.7 copying and adjusting bin/dipy_median_otsu -> build/scripts-2.7 copying and adjusting bin/dipy_fit_dki -> build/scripts-2.7 copying and adjusting bin/dipy_mask -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_fit_dti from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_mapmri from 664 to 775 changing mode of build/scripts-2.7/dipy_nlmeans from 664 to 775 changing mode of build/scripts-2.7/dipy_reslice from 664 to 775 changing mode of build/scripts-2.7/dipy_info from 664 to 775 changing mode of build/scripts-2.7/dipy_track_det from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_csd from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_csa from 664 to 775 changing mode of build/scripts-2.7/dipy_median_otsu from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_dki from 664 to 775 changing mode of build/scripts-2.7/dipy_mask from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --buildsystem=python_distutils --with python2 dh_testroot -a -O--buildsystem=python_distutils dh_prep -a -O--buildsystem=python_distutils dh_installdirs -a -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_install: This feature will be removed in compat 12. python setup.py install --force --root=/<>/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_py package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse s390x-linux-gnu-gcc: error: unrecognized command line option ‘-msse2’ s390x-linux-gnu-gcc: error: unrecognized command line option ‘-mfpmath=sse’ Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RkiuPD/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 test.o -o libtestlib.so -fopenmp skipping 'dipy/direction/pmf.c' Cython extension (up-to-date) skipping 'dipy/direction/probabilistic_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/direction/closest_peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/direction/bootstrap_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/recspeed.c' Cython extension (up-to-date) skipping 'dipy/reconst/vec_val_sum.c' Cython extension (up-to-date) skipping 'dipy/reconst/quick_squash.c' Cython extension (up-to-date) skipping 'dipy/tracking/distances.c' Cython extension (up-to-date) skipping 'dipy/tracking/streamlinespeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/localtrack.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/direction_getter.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/tissue_classifier.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/interpolation.c' Cython extension (up-to-date) skipping 'dipy/tracking/vox2track.c' Cython extension (up-to-date) skipping 'dipy/tracking/propspeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/fbcmeasures.c' Cython extension (up-to-date) skipping 'dipy/segment/cythonutils.c' Cython extension (up-to-date) skipping 'dipy/segment/featurespeed.c' Cython extension (up-to-date) skipping 'dipy/segment/metricspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clusteringspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clustering_algorithms.c' Cython extension (up-to-date) skipping 'dipy/segment/mrf.c' Cython extension (up-to-date) skipping 'dipy/denoise/denspeed.c' Cython extension (up-to-date) skipping 'dipy/denoise/pca_noise_estimate.c' Cython extension (up-to-date) skipping 'dipy/denoise/nlmeans_block.c' Cython extension (up-to-date) skipping 'dipy/denoise/enhancement_kernel.c' Cython extension (up-to-date) skipping 'dipy/denoise/shift_twist_convolution.c' Cython extension (up-to-date) skipping 'dipy/align/vector_fields.c' Cython extension (up-to-date) skipping 'dipy/align/sumsqdiff.c' Cython extension (up-to-date) skipping 'dipy/align/expectmax.c' Cython extension (up-to-date) skipping 'dipy/align/crosscorr.c' Cython extension (up-to-date) skipping 'dipy/align/bundlemin.c' Cython extension (up-to-date) skipping 'dipy/align/transforms.c' Cython extension (up-to-date) skipping 'dipy/align/parzenhist.c' Cython extension (up-to-date) skipping 'dipy/utils/omp.c' Cython extension (up-to-date) skipping 'dipy/utils/fast_numpy.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/tmp creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python2.7 creating /<>/debian/tmp/usr/lib/python2.7/dist-packages creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/multi_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/flow_runner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/align.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_reconst_csa_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_reconst_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_masking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_reconst_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/workflow_tests_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_reconst_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_iap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_align.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/tests/test_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-s390x-2.7/dipy/workflows/io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/reconst.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/combined_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/workflows/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-s390x-2.7/dipy/COMMIT_INFO.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/six.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/_importlib.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/omp.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-s390x-2.7/dipy/utils/tests/test_omp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-s390x-2.7/dipy/utils/tests/test_arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-s390x-2.7/dipy/utils/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-s390x-2.7/dipy/utils/tests/test_tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-s390x-2.7/dipy/utils/fast_numpy.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/optpkg.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-s390x-2.7/dipy/utils/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/nlmeans_block.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/localpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/adaptive_soft_matching.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/denspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/pca_noise_estimate.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_ascm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_lpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/tests/test_kernel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-s390x-2.7/dipy/denoise/shift_twist_convolution.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/enhancement_kernel.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-s390x-2.7/dipy/denoise/non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-s390x-2.7/dipy/fixes/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-s390x-2.7/dipy/fixes/argparse.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-s390x-2.7/dipy/fixes/scipy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-s390x-2.7/dipy/pkg_info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-s390x-2.7/dipy/sims/phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-s390x-2.7/dipy/sims/voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-s390x-2.7/dipy/sims/tests/test_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-s390x-2.7/dipy/sims/tests/test_phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-s390x-2.7/dipy/sims/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-s390x-2.7/dipy/sims/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_101D.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/t1_coronal_slice.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/cb_2.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/eg_3voxels.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_piesno.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/fib2.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/C3.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_64D.bvals.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/life_matlab_weights.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/55dir_grad.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_disk_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/repulsion200.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/aniso_vox.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/ascm_out_test.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_25.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/circle.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/func_discrete.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/gtab_taiwan_dsi.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/55dir_grad.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/evenly_distributed_sphere_642.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/grad_514.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_64D.gradients.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_button_panel.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_64D.nii -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/evenly_distributed_sphere_724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_file_select_menu_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_25.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_line_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_disk_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/func_coef.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/gtab_isbi2013_2shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/C.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_textbox.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/fib1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_custom_interactor_style_events.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/evenly_distributed_sphere_362.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_text_block.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/dsi515_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_button_panel.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/C1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_101D.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/repulsion724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/tracks300.trk -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/gtab_3shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/life_matlab_rmse.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/dsi4169_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_line_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_button_and_slider_widgets.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_25.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_file_select_menu_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/ScannerVectors_GQI101.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/small_101D.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/S0_10slices.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/test_ui_textbox.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/dipy_colormaps.json -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/repulsion100.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/fib0.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/files/sphere_grad.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-s390x-2.7/dipy/data/fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-s390x-2.7/dipy/data/tests/test_data.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-s390x-2.7/dipy/data/tests/test_fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-s390x-2.7/dipy/data/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-s390x-2.7/dipy/__config__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/image.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/trackvis.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_io_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/test_io_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-s390x-2.7/dipy/io/pickles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/vtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-s390x-2.7/dipy/io/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/onetime.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/histeq.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/profile.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/sphere_stats.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/tests/test_ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-s390x-2.7/dipy/core/ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/wavelet.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/core/rng.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-s390x-2.7/dipy/info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-s390x-2.7/dipy/tests/test_scripts.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-s390x-2.7/dipy/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-s390x-2.7/dipy/tests/scriptrunner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/bench_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/bench_squash.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-s390x-2.7/dipy/reconst/peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/quick_squash.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_reco_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_peakdf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_forecast.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_peak_finding.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_shore_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_shore_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/tests/test_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-s390x-2.7/dipy/reconst/cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/recspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/forecast.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/vec_val_sum.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-s390x-2.7/dipy/reconst/dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-s390x-2.7/dipy/testing/decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-s390x-2.7/dipy/testing/memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-s390x-2.7/dipy/testing/tests/test_memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-s390x-2.7/dipy/testing/tests/test_decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-s390x-2.7/dipy/testing/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-s390x-2.7/dipy/testing/spherepoints.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-s390x-2.7/dipy/testing/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/transforms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/crosscorr.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/sumsqdiff.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/parzenhist.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/bundlemin.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_crosscorr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_parzenhist.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_sumsqdiff.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_transforms.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_whole_brain_slr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_vector_fields.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_expectmax.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/tests/test_imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-s390x-2.7/dipy/align/imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/expectmax.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/vector_fields.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-s390x-2.7/dipy/align/imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/widget.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/actor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/colormap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_actors.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_widgets.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/tests/test_window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-s390x-2.7/dipy/viz/window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/projections.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-s390x-2.7/dipy/viz/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-s390x-2.7/dipy/direction/closest_peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-s390x-2.7/dipy/direction/probabilistic_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-s390x-2.7/dipy/direction/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-s390x-2.7/dipy/direction/pmf.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/tests/test_bootstrap_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/tests/test_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/tests/test_pmf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/tests/test_prob_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-s390x-2.7/dipy/direction/bootstrap_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-s390x-2.7/dipy/direction/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-s390x-2.7/dipy/external/fsl.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-s390x-2.7/dipy/external/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-s390x-2.7/dipy/external/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-s390x-2.7/dipy/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-s390x-2.7/dipy/boots/resampling.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-s390x-2.7/dipy/boots/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/streamlinespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/vox2track.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/eudx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/fbcmeasures.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-s390x-2.7/dipy/tracking/benchmarks/bench_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-s390x-2.7/dipy/tracking/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-s390x-2.7/dipy/tracking/life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/propspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_fbc.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_localtrack.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_track_volumes.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_distances.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_propagation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-s390x-2.7/dipy/tracking/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/local/direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/local/interpolation.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/local/localtracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-s390x-2.7/dipy/tracking/local/tests/test_tissue_classifier.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-s390x-2.7/dipy/tracking/local/tests/test_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-s390x-2.7/dipy/tracking/local/tests/test_interpolation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-s390x-2.7/dipy/tracking/local/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-s390x-2.7/dipy/tracking/local/tissue_classifier.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/local/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/local/localtrack.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-s390x-2.7/dipy/tracking/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-s390x-2.7/dipy/tracking/distances.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/tissue.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/cythonutils.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-s390x-2.7/dipy/segment/benchmarks/bench_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-s390x-2.7/dipy/segment/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-s390x-2.7/dipy/segment/featurespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/mrf.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_mrf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_adjustment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_qbx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_qb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_rb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/tests/test_feature.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-s390x-2.7/dipy/segment/metricspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/clustering_algorithms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/bundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/clusteringspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/threshold.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-s390x-2.7/dipy/segment/quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment running install_scripts creating /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_dti -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_mapmri -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_nlmeans -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reslice -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_info -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_track_det -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_csd -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_csa -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_median_otsu -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_dki -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_mask -> /<>/debian/tmp/usr/bin changing mode of /<>/debian/tmp/usr/bin/dipy_fit_dti to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_mapmri to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_nlmeans to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_reslice to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_info to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_track_det to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_csd to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_csa to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_median_otsu to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_dki to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_mask to 775 running install_data creating /<>/debian/tmp/usr/share creating /<>/debian/tmp/usr/share/doc creating /<>/debian/tmp/usr/share/doc/dipy creating /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/fiber_to_bundle_coherence.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_ui.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_localpca.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_tissue_classifier.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_ivim.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_bootstrap_peaks.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/combined_workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_extending_clustering_framework.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tissue_classification.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/deterministic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_reconst.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_mapmri.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/linear_fascicle_evaluation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_forecast.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_nlmeans.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/particle_filtering_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/piesno.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_fwdti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_surfaces.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/introduction_to_basic_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_slice.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_roi_contour.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_ascm.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_features.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_2d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_bundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/affine_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/kfold_xval.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/bundle_registration.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/contextual_enhancement.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_advanced.py -> /<>/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.14.0.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/*/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/<>/build HOME=/<>/build; \ cd doc; /usr/bin/make html-after-examples SPHINXOPTS="-D today=\"May 14, 2018\"" make[2]: Entering directory '/<>/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="May 14, 2018" . _build/html Running Sphinx v1.7.9 Initializing GitHub plugin making output directory... loading pickled environment... not yet created loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : ('intersphinx inventory %r not fetchable due to %s: %s', 'http://docs.python.org/objects.inv', , ProxyError(...)) building [mo]: targets for 0 po files that are out of date building [html]: targets for 110 source files that are out of date updating environment: 110 added, 0 changed, 0 removed reading sources... [ 0%] api_changes reading sources... [ 1%] cite reading sources... [ 2%] dependencies reading sources... [ 3%] devel/coding_style_guideline reading sources... [ 4%] devel/commit_codes reading sources... [ 5%] devel/gitwash/configure_git reading sources... [ 6%] devel/gitwash/development_workflow reading sources... [ 7%] devel/gitwash/dot2_dot3 reading sources... [ 8%] devel/gitwash/following_latest reading sources... [ 9%] devel/gitwash/forking_hell reading sources... [ 10%] devel/gitwash/git_development reading sources... [ 10%] devel/gitwash/git_install reading sources... [ 11%] devel/gitwash/git_intro reading sources... [ 12%] devel/gitwash/git_resources reading sources... [ 13%] devel/gitwash/index reading sources... [ 14%] devel/gitwash/maintainer_workflow reading sources... [ 15%] devel/gitwash/patching reading sources... [ 16%] devel/gitwash/set_up_fork reading sources... [ 17%] devel/index reading sources... [ 18%] devel/intro reading sources... [ 19%] devel/make_release reading sources... [ 20%] devel/python3 reading sources... [ 20%] developers reading sources... [ 21%] documentation reading sources... [ 22%] examples_built/affine_registration_3d reading sources... [ 23%] examples_built/brain_extraction_dwi reading sources... [ 24%] examples_built/bundle_registration reading sources... [ 25%] examples_built/combined_workflow_creation reading sources... [ 26%] examples_built/contextual_enhancement reading sources... [ 27%] examples_built/denoise_localpca reading sources... [ 28%] examples_built/denoise_nlmeans reading sources... [ 29%] examples_built/deterministic_fiber_tracking reading sources... [ 30%] examples_built/fiber_to_bundle_coherence reading sources... [ 30%] examples_built/gradients_spheres reading sources... [ 31%] examples_built/introduction_to_basic_tracking reading sources... [ 32%] examples_built/kfold_xval reading sources... [ 33%] examples_built/linear_fascicle_evaluation reading sources... [ 34%] examples_built/particle_filtering_fiber_tracking reading sources... [ 35%] examples_built/probabilistic_fiber_tracking reading sources... [ 36%] examples_built/quick_start reading sources... [ 37%] examples_built/reconst_csa reading sources... [ 38%] examples_built/reconst_csa_parallel reading sources... [ 39%] examples_built/reconst_csd reading sources... [ 40%] examples_built/reconst_csd_parallel reading sources... [ 40%] examples_built/reconst_dki reading sources... 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CMC/ACT Tissue Classifiers --------------------- /<>/doc/examples_built/particle_filtering_fiber_tracking.rst:151: WARNING: Literal block expected; none found. /<>/doc/examples_built/reconst_forecast.rst:114: WARNING: Literal block expected; none found. /<>/doc/examples_built/reconst_shore_metrics.rst:133: WARNING: duplicate citation Descoteaux2011, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:137: WARNING: duplicate citation Wu2007, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:140: WARNING: duplicate citation Wu2008, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/segment_clustering_metrics.rst:184: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_features.rst /<>/doc/examples_built/segment_extending_clustering_framework.rst:272: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_metrics.rst /<>/doc/examples_built/segment_quickbundles.rst:180: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_extending_clustering_framework.rst /<>/doc/examples_built/sfm_tracking.rst:185: WARNING: duplicate citation Rokem2015, other instance in /<>/doc/examples_built/sfm_reconst.rst /<>/doc/examples_built/simulate_multi_tensor.rst:89: WARNING: Literal block expected; 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none found. /<>/doc/examples_built/syn_registration_2d.rst:258: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:278: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/affine_registration_3d.rst /<>/doc/examples_built/syn_registration_3d.rst:104: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:157: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:175: WARNING: duplicate citation Avants09, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/syn_registration_3d.rst:180: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/tracking_bootstrap_peaks.rst:6: WARNING: Title overline too short. ================================================= Bootstrap and Closest Peak Direction Getters Example ================================================= /<>/doc/examples_built/tracking_bootstrap_peaks.rst:76: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_bootstrap_peaks.rst:145: WARNING: Explicit markup ends without a blank line; unexpected unindent. /<>/doc/examples_built/tracking_bootstrap_peaks.rst:148: WARNING: Explicit markup ends without a blank line; unexpected unindent. /<>/doc/examples_built/tracking_quick_start.rst:210: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_quickbundles.rst /<>/doc/examples_built/tracking_tissue_classifier.rst:155: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:227: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:352: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:369: WARNING: duplicate citation Smith2012, other instance in /<>/doc/examples_built/particle_filtering_fiber_tracking.rst /<>/doc/examples_built/viz_bundles.rst:209: WARNING: Error in "figure" directive: invalid option block. .. figure:: bundle5.png :align: center **Color every streamline by the length of the streamline ** /<>/doc/examples_built/viz_roi_contour.rst:6: WARNING: Title overline too short. ================================== Visualization of ROI Surface Rendered with Streamlines ================================== /<>/doc/examples_built/viz_slice.rst:171: WARNING: Literal block expected; 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Fiber ORientation Estimated using Continuous Axially Symmetric Tensors ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/examples_index.rst:64: WARNING: Title underline too short. 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[ 98%] examples_built/reconst_forecast.py copying downloadable files... [100%] examples_built/tissue_classification.py copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 161 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/<>/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory make[1]: [debian/rules:83: override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/<>/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude 'test_(peaksFromModelParallel|fetcher)' dipy; \ done I: Running Dipy unittests using python2.7 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:11: DeprecationWarning: The `dipy.io.trackvis` module is deprecated as of version 0.14 of Dipy and will be removed in a future version. Please use `dipy.io.streamline` module instead DeprecationWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:45: UserWarning: sklearn is not available, you can use 'nnls' method to fit the SparseFascicleModel warnings.warn(w) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:48: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_1 = np.random.random_integers(20, size=(171, 171, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:51: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_2 = np.random.random_integers(20, size=(114, 114, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:54: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_3 = np.random.random_integers(20, size=(58, 58, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/quickbundles.py:10: DeprecationWarning: Class 'dipy.segment.quickbundles.QuickBundles' is deprecated, instead use module 'dipy.segment.clustering.QuickBundles'. warn(DeprecationWarning(deprecation_msg)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/fvtk.py:93: DeprecationWarning: Module 'dipy.viz.fvtk' is deprecated as of version 0.14 of dipy and will be removed in a future version. Please, instead use module 'dipy.viz.window' or 'dipy.viz.actor'. warn(DeprecationWarning(deprecation_msg)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/docstring_parser.py:151: UserWarning: Unknown section Yields warn("Unknown section %s" % key) Set numpy print options to "legacy" for new versions of numpy ... ok Compares the output of the optimized function to compute the cross- ... ok Compares the output of the optimized function to compute the cross- ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_2d ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_expectmax.test_quantize_positive_2d ... ok dipy.align.tests.test_expectmax.test_quantize_positive_3d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_2d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_3d ... ok dipy.align.tests.test_imaffine.test_transform_centers_of_mass_3d ... ok dipy.align.tests.test_imaffine.test_transform_geometric_centers_3d ... ok dipy.align.tests.test_imaffine.test_transform_origins_3d ... ok dipy.align.tests.test_imaffine.test_affreg_all_transforms ... ok dipy.align.tests.test_imaffine.test_affreg_defaults ... ok dipy.align.tests.test_imaffine.test_mi_gradient ... ok dipy.align.tests.test_imaffine.test_affine_map ... ok dipy.align.tests.test_imaffine.test_MIMetric_invalid_params ... ok Test matrix multiplication using None as identity ... ok Test 2D DiffeomorphicMap ... ok Test simplification of 2D diffeomorphic maps ... ok Test simplification of 3D diffeomorphic maps ... ok Test exceptions from SyN ... ok Test direction and spacings from affine transforms ... ok Test 2D SyN with SSD metric, demons-like optimizer ... Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 2)>>0.995530 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 3)>>0.986457 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 2)>>0.998987 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 3)>>0.999780 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 2)>>0.999884 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 3)>>0.999642 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 2)>>0.997823 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 3)>>0.993422 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 2)>>0.997435 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 3)>>0.999290 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 148.967083 148.967083 297.934166 inf 2: 140.803789 140.803789 281.607577 inf 3: 132.911776 132.911776 265.823551 inf 4: 123.231999 123.231999 246.463997 inf 5: 114.722135 114.722135 229.444269 inf 6: 107.066895 107.066895 214.133789 inf 7: 102.035943 102.035943 204.071887 inf 8: 96.646767 96.646767 193.293534 inf 9: 89.674500 89.674500 179.349000 inf 10: 81.181151 81.181151 162.362302 inf 11: 75.765548 75.765548 151.531095 inf 12: 71.448278 71.448278 142.896556 0.00527900129756 13: 68.103093 68.103093 136.206185 0.00538551128291 14: 64.869063 64.869063 129.738127 0.00538217741931 15: 62.595061 62.595061 125.190122 0.00529894244928 16: 58.781632 58.781632 117.563263 0.00510648777591 17: 56.600046 56.600046 113.200092 0.00495916074255 18: 53.238731 53.238731 106.477463 0.0047645234269 19: 51.677355 51.677355 103.354709 0.00461568677843 20: 49.654621 49.654621 99.309242 0.00435743030392 21: 49.086650 49.086650 98.173299 0.00406536210423 22: 47.099318 47.099318 94.198635 0.00370473902637 23: 46.583460 46.583460 93.166920 0.00347969901492 24: 44.167176 44.167176 88.334352 0.00321264505233 25: 44.105006 44.105006 88.210012 0.00306888165425 26: 41.817988 41.817988 83.635977 0.00281825494168 27: 42.280137 42.280137 84.560273 0.00269599978528 28: 40.373037 40.373037 80.746075 0.00241258184945 29: 40.929566 40.929566 81.859132 0.00229636684975 30: 38.793769 38.793769 77.587538 0.00204200026644 31: 39.270946 39.270946 78.541891 0.00201002212417 32: 37.058236 37.058236 74.116471 0.00184073004532 33: 37.857003 37.857003 75.714007 0.00187295393419 34: 35.392249 35.392249 70.784499 0.00169410061597 35: 36.346224 36.346224 72.692448 0.00176892940958 36: 33.366015 33.366015 66.732030 0.00161084193361 37: 34.626740 34.626740 69.253480 0.00180609961394 38: 31.657261 31.657261 63.314522 0.0016915219524 39: 33.291087 33.291087 66.582175 0.00193635182015 40: 30.898098 30.898098 61.796197 0.0017823801644 41: 32.607002 32.607002 65.214004 0.00191966443357 42: 30.491445 30.491445 60.982890 0.00165172870056 43: 32.109173 32.109173 64.218346 0.00168978551442 44: 29.815562 29.815562 59.631123 0.00135708964704 45: 31.567858 31.567858 63.135716 0.00139854108657 46: 29.123279 29.123279 58.246559 0.00103999295601 47: 30.770206 30.770206 61.540412 0.00112624738281 48: 28.418635 28.418635 56.837269 0.00081952989386 49: 29.972625 29.972625 59.945250 0.000995718701581 50: 27.698627 27.698627 55.397253 0.000767397619502 51: 29.073138 29.073138 58.146276 0.00102010871553 52: 26.763331 26.763331 53.526662 0.000858645013137 53: 28.288321 28.288321 56.576642 0.00114772239662 54: 25.746367 25.746367 51.492734 0.000975495314267 55: 26.884107 26.884107 53.768214 0.00127936290608 56: 24.717974 24.717974 49.435947 0.0011660667132 57: 25.901010 25.901010 51.802019 0.00147185395977 58: 23.962974 23.962974 47.925947 0.00132523840179 59: 25.099345 25.099345 50.198690 0.00158081685919 60: 23.193417 23.193417 46.386833 0.00139065766645 61: 24.386849 24.386849 48.773698 0.00160894078534 62: 22.611317 22.611317 45.222634 0.00136961273536 63: 23.876936 23.876936 47.753873 0.00153371355099 64: 22.131433 22.131433 44.262867 0.00123944193997 65: 23.519629 23.519629 47.039258 0.00137662840832 66: 21.740970 21.740970 43.481940 0.00102354347782 67: 23.119556 23.119556 46.239111 0.00116202304804 68: 21.285857 21.285857 42.571715 0.000844307053708 69: 22.573939 22.573939 45.147878 0.00102393893249 70: 20.835922 20.835922 41.671844 0.000755939551655 71: 22.048718 22.048718 44.097437 0.000960362625462 72: 20.359352 20.359352 40.718703 0.000729239877786 73: 21.400371 21.400371 42.800742 0.000967314954066 74: 19.819711 19.819711 39.639423 0.000789208326395 75: 20.844208 20.844208 41.688415 0.00104734960027 76: 19.227650 19.227650 38.455301 0.000873484139106 77: 20.305247 20.305247 40.610495 0.00114614197979 78: 18.776277 18.776277 37.552554 0.000949488614145 79: 19.718303 19.718303 39.436606 0.00119326434111 80: 18.149259 18.149259 36.298518 0.000990465414743 81: 18.975172 18.975172 37.950343 0.00125040421089 82: 17.624281 17.624281 35.248562 0.00108136468005 83: 19.077837 19.077837 38.155674 0.00131914027996 84: 17.006790 17.006790 34.013579 0.000982965238591 85: 17.140211 17.140211 34.280422 0.00126463826911 86: 16.932329 16.932329 33.864659 0.0012778156385 87: 18.293001 18.293001 36.586002 0.00139013030223 88: 16.424052 16.424052 32.848104 0.000963408243583 89: 16.654943 16.654943 33.309885 0.00115378059854 90: 16.442448 16.442448 32.884896 0.00106150548301 91: 17.836032 17.836032 35.672064 0.00110497495541 92: 15.923964 15.923964 31.847928 0.000614261509787 93: 16.281589 16.281589 32.563178 0.000808182073869 94: 16.048055 16.048055 32.096109 0.000722489687698 95: 17.378184 17.378184 34.756367 0.00079228200291 96: 15.644493 15.644493 31.288986 0.000287858956944 97: 16.251447 16.251447 32.502894 0.000522612876478 98: 15.723382 15.723382 31.446765 0.000499562586189 99: 17.451646 17.451646 34.903293 0.000609963313096 100: 15.425195 15.425195 30.850390 4.36279848735e-05 Optimizing level 2 0: 77.385761 77.385761 154.771523 inf 1: 68.314127 68.314127 136.628254 inf 2: 60.766545 60.766545 121.533090 inf 3: 54.926898 54.926898 109.853796 inf 4: 49.469970 49.469970 98.939940 inf 5: 44.188710 44.188710 88.377420 inf 6: 39.190633 39.190633 78.381265 inf 7: 34.412704 34.412704 68.825407 inf 8: 30.106027 30.106027 60.212054 inf 9: 26.805734 26.805734 53.611468 inf 10: 24.097343 24.097343 48.194686 inf 11: 21.725603 21.725603 43.451205 inf 12: 19.596124 19.596124 39.192247 0.00886335202523 13: 18.207357 18.207357 36.414714 0.00882712749115 14: 17.204369 17.204369 34.408738 0.00870846639927 15: 15.729452 15.729452 31.458905 0.00845476542213 16: 14.166168 14.166168 28.332336 0.00813909934767 17: 13.780263 13.780263 27.560526 0.00782666239582 18: 12.769721 12.769721 25.539442 0.0073284673903 19: 12.037616 12.037616 24.075233 0.00685134493436 20: 11.543080 11.543080 23.086159 0.00639936613594 21: 10.636917 10.636917 21.273835 0.00596164500763 22: 10.371316 10.371316 20.742633 0.00566128670781 23: 8.939313 8.939313 17.878627 0.00530036705829 24: 9.462034 9.462034 18.924067 0.00531304680024 25: 7.939716 7.939716 15.879432 0.00497945303877 26: 7.907807 7.907807 15.815615 0.00508325479959 27: 7.319049 7.319049 14.638099 0.00495191250916 28: 7.875824 7.875824 15.751647 0.0049434438127 29: 6.373540 6.373540 12.747079 0.00455480282615 30: 7.108408 7.108408 14.216816 0.00470025213158 31: 5.907998 5.907998 11.815995 0.00427013931798 32: 6.506102 6.506102 13.012203 0.00437511392016 33: 6.151650 6.151650 12.303301 0.00388817887804 34: 7.009036 7.009036 14.018073 0.00356445889587 35: 5.881651 5.881651 11.763301 0.0025250777838 36: 6.261745 6.261745 12.523489 0.00246982860202 37: 6.192900 6.192900 12.385800 0.00183244025466 38: 6.701746 6.701746 13.403493 0.00154448016247 39: 5.835174 5.835174 11.670347 0.000836630213604 40: 6.342181 6.342181 12.684363 0.000913392901032 41: 5.802395 5.802395 11.604790 0.000366852727596 42: 6.452019 6.452019 12.904038 0.000660863851964 43: 5.337680 5.337680 10.675360 0.000179984175105 44: 5.681863 5.681863 11.363726 0.000903816526038 45: 4.993749 4.993749 9.987497 0.00101939369964 46: 4.978141 4.978141 9.956282 0.00165911723027 47: 4.882039 4.882039 9.764079 0.0018489278258 48: 5.002736 5.ok Test 2D SyN with SSD metric, Gauss-Newton optimizer ... 002736 10.005472 0.0022877339206 49: 4.728744 4.728744 9.457487 0.00232103815091 50: 4.679795 4.679795 9.359590 0.0024548294428 51: 4.904466 4.904466 9.808932 0.00229157243273 52: 5.222718 5.222718 10.445436 0.002068725746 53: 4.753041 4.753041 9.506082 0.00130758822044 54: 5.292235 5.292235 10.584469 0.00115160226941 55: 4.904898 4.904898 9.809797 0.000203426203392 56: 5.498666 5.498666 10.997332 0.000101125180348 57: 5.065853 5.065853 10.131705 -0.000666035113992 Optimizing level 1 0: 44.894344 44.894344 89.788688 inf 1: 30.882591 30.882591 61.765181 inf 2: 24.173722 24.173722 48.347444 inf 3: 21.749926 21.749926 43.499853 inf 4: 24.945659 24.945659 49.891319 inf 5: 20.402059 20.402059 40.804119 inf 6: 22.094003 22.094003 44.188006 inf 7: 20.022455 20.022455 40.044911 inf 8: 20.755886 20.755886 41.511771 inf 9: 20.071647 20.071647 40.143294 inf 10: 19.762609 19.762609 39.525218 inf 11: 20.184060 20.184060 40.368119 inf 12: 18.913669 18.913669 37.827338 0.00386378108297 13: 20.488102 20.488102 40.976205 0.00230836881052 14: 18.228416 18.228416 36.456833 0.00130580921618 15: 21.197795 21.197795 42.395590 0.00134296777379 16: 17.337246 17.337246 34.674491 0.000820339688812 17: 20.485964 20.485964 40.971929 0.000892632364692 18: 16.970909 16.970909 33.941819 0.000550455500282 19: 19.627168 19.627168 39.254336 0.000871298573262 20: 17.681810 17.681810 35.363620 0.0006375445446 21: 18.381357 18.381357 36.762714 0.000788345607605 22: 17.986889 17.986889 35.973779 0.000750199885573 23: 18.295969 18.295969 36.591939 0.000790793071818 24: 17.236774 17.236774 34.473548 0.000656870812442 25: 18.637643 18.637643 37.275286 0.000872450872429 26: 16.995943 16.995943 33.991886 0.000501576806719 27: 19.509562 19.509562 39.019123 0.000772206561961 28: 17.177725 17.177725 34.355450 3.71776733499e-05 Optimizing level 0 0: 84.623713 84.623713 169.247426 inf 1: 68.705203 68.705203 137.410406 inf 2: 61.370958 61.370958 122.741917 inf 3: 57.037942 57.037942 114.075885 inf 4: 53.503883 53.503883 107.007766 inf 5: 51.483044 51.483044 102.966088 inf 6: 49.175738 49.175738 98.351476 inf 7: 48.234830 48.234830 96.469660 inf 8: 46.250199 46.250199 92.500397 inf 9: 46.074623 46.074623 92.149247 inf 10: 44.117121 44.117121 88.234242 inf 11: 44.666336 44.666336 89.332671 inf 12: 42.359009 42.359009 84.718018 0.00379240726617 13: 43.314872 43.314872 86.629745 0.00295684606193 14: 40.980361 40.980361 81.960721 0.00234773777299 15: 42.679494 42.679494 85.358988 0.00208777842733 16: 39.836186 39.836186 79.672371 0.00167562757615 17: 41.850554 41.850554 83.701108 0.00160427040818 18: 38.608498 38.608498 77.216996 0.00128428145931 19: 40.652565 40.652565 81.305129 0.00133944070227 20: 37.744813 37.744813 75.489626 0.00110007515368 21: 38.963668 38.963668 77.927336 0.00120650335872 22: 37.285145 37.285145 74.570291 0.00107592221366 23: 38.511040 38.511040 77.022080 0.0011537889629 24: 36.651474 36.651474 73.302948 0.000973140176255 Static-Reference Residual error: 0.005961 (0.000188) Moving-Reference Residual error :0.007328 (0.000436) Final residual error: 0.171298 (0.157130) Pre-align: [[ 1. 0. 0.] [ 0. 1. 0.] [ 0. 0. 1.]] Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 140.425137 140.425137 280.850273 inf 2: 122.632717 122.632717 245.265433 inf 3: 107.533624 107.533624 215.067248 inf 4: 95.957127 95.957127 191.914253 inf 5: 82.847331 82.847331 165.694663 inf 6: 71.216589 71.216589 142.433178 inf 7: 63.804336 63.804336 127.608672 inf 8: 54.921843 54.921843 109.843686 inf 9: 45.509381 45.509381 91.018761 inf 10: 39.685490 39.685490 79.370980 inf 11: 35.088915 35.088915 70.177829 inf 12: 29.560402 29.560402 59.120805 0.0102528290918 13: 25.559512 25.559512 51.119023 0.0104618758347 14: 22.480693 22.480693 44.961387 0.0106048529083 15: 19.647795 19.647795 39.295589 0.0107012323565 16: 17.522935 17.522935 35.045869 0.0107498639909 17: 15.905991 15.905991 31.811983 0.0106623563228 18: 14.572590 14.572590 29.145180 0.0104793425628 19: 12.783410 12.783410 25.566821 0.0101986972873 20: 11.607882 11.607882 23.215765 0.00983910941086 21: 11.152276 11.152276 22.304552 0.009431011778 22: 10.661634 10.661634 21.323268 0.00895386457304 23: 11.037056 11.037056 22.074113 0.008327490255 24: 12.499733 12.499733 24.999466 0.00730827466245 25: 14.954526 14.954526 29.909051 0.00574650197257 26: 12.461237 12.461237 24.922474 0.00340382811207 27: 13.527777 13.527777 27.055554 0.00214078929779 28: 12.473630 12.473630 24.947261 0.000733528152525 29: 13.627387 13.627387 27.254774 6.46857149584e-06 Optimizing level 2 0: 61.023019 61.023019 122.046039 inf 1: 56.538447 56.538447 113.076893 inf 2: 49.981503 49.981503 99.963005 inf 3: 48.064184 48.064184 96.128368 inf 4: 42.887603 42.887603 85.775206 inf 5: 43.089590 43.089590 86.179179 inf 6: 37.320460 37.320460 74.640919 inf 7: 39.874221 39.874221 79.748442 inf 8: 34.029064 34.029064 68.058128 inf 9: 36.929952 36.929952 73.859903 inf 10: 32.223323 32.223323 64.446645 inf 11: 34.359234 34.359234 68.718467 inf 12: 28.346886 28.346886 56.693771 0.00420675209614 13: 31.255763 31.255763 62.511525 0.00416304569667 14: 26.086055 26.086055 52.172110 0.00361112048287 15: 29.563715 29.563715 59.127430 0.00377827842877 16: 23.307039 23.307039 46.614077 0.0032591466395 17: 27.891947 27.891947 55.783894 0.00368162196916 18: 20.164356 20.164356 40.328712 0.0031042998313 19: 23.480347 23.480347 46.960693 0.00385265702307 20: 18.019272 18.019272 36.038544 0.00357240082416 21: 23.276865 23.276865 46.553729 0.00432188486185 22: 16.069171 16.069171 32.138343 0.00359561669321 23: 20.891326 20.891326 41.782653 0.00432682860233 24: 16.132507 16.132507 32.265013 0.00359712577674 25: 20.985889 20.985889 41.971778 0.00407071377645 26: 13.327543 13.327543 26.655086 0.00297958700443 27: 18.014659 18.014659 36.029318 0.00385999028087 28: 11.834185 11.834185 23.668371 0.00299714423107 29: 19.452558 19.452558 38.905117 0.00400204877888 30: 11.029442 11.029442 22.058884 0.00228617485084 31: 17.500499 17.500499 35.000999 0.00349362840612 32: 12.468678 12.468678 24.937356 0.0022425043651ok Test 3D SyN with SSD metric, demons-like optimizer ... ok Test 3D SyN with SSD metric, Gauss-Newton optimizer ... 7 33: 17.841311 17.841311 35.682622 0.0029245127924 34: 11.867010 11.867010 23.734020 0.00126107957693 35: 18.087270 18.087270 36.174540 0.00219359773501 36: 11.491153 11.491153 22.982305 0.000496696872055 37: 17.587509 17.587509 35.175018 0.00145914383772 38: 12.762609 12.762609 25.525217 -0.000250202580232 Optimizing level 1 0: 95.721706 95.721706 191.443412 inf 1: 40.331688 40.331688 80.663376 inf 2: 23.928366 23.928366 47.856731 inf 3: 17.568627 17.568627 35.137254 inf 4: 28.969939 28.969939 57.939878 inf 5: 19.569967 19.569967 39.139935 inf 6: 27.459121 27.459121 54.918241 inf 7: 20.340419 20.340419 40.680837 inf 8: 26.612097 26.612097 53.224194 inf 9: 21.562172 21.562172 43.124343 inf 10: 27.069414 27.069414 54.138829 inf 11: 23.864093 23.864093 47.728186 inf 12: 29.141533 29.141533 58.283065 0.00542845920851 13: 27.968314 27.968314 55.936628 -5.41413761609e-05 Optimizing level 0 0: 135.105913 135.105913 270.211825 inf 1: 67.346824 67.346824 134.693647 inf 2: 58.073357 58.073357 116.146715 inf 3: 65.531738 65.531738 131.063477 inf 4: 64.193338 64.193338 128.386675 inf 5: 63.268582 63.268582 126.537164 inf 6: 64.914284 64.914284 129.828567 inf 7: 59.158043 59.158043 118.316085 inf 8: 65.709626 65.709626 131.419253 inf 9: 57.908895 57.908895 115.817790 inf 10: 66.806227 66.806227 133.612454 inf 11: 57.146353 57.146353 114.292706 inf 12: 68.367808 68.367808 136.735617 0.00257782253326 13: 56.823024 56.823024 113.646049 -2.16853329018e-05 Static-Reference Residual error: 0.041575 (0.072598) Moving-Reference Residual error :0.009427 (0.000717) Final residual error: 1.657301 (15.738568) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 156.113535 156.113535 312.227070 inf 1: 123.101970 123.101970 246.203940 inf 2: 94.813392 94.813392 189.626783 inf 3: 69.683166 69.683166 139.366333 inf 4: 47.661585 47.661585 95.323170 inf 5: 30.866092 30.866092 61.732184 inf 6: 17.763043 17.763043 35.526086 inf 7: 8.411418 8.411418 16.822836 inf 8: 3.891010 3.891010 7.782019 inf 9: 4.955464 4.955464 9.910927 inf Optimizing level 0 0: 76.053769 76.053769 152.107537 inf 1: 61.611425 61.611425 123.222849 inf 2: 52.858264 52.858264 105.716528 inf 3: 47.715526 47.715526 95.431051 inf 4: 46.516910 46.516910 93.033820 inf 5: 42.188476 42.188476 84.376953 inf 6: 42.986213 42.986213 85.972425 inf 7: 39.148031 39.148031 78.296061 inf 8: 40.055706 40.055706 80.111412 inf 9: 37.813761 37.813761 75.627523 inf Static-Reference Residual error: 0.003568 (0.000018) Moving-Reference Residual error :0.003460 (0.000019) Final residual error: 0.004769 (0.000069) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., ok Test 2D SyN with CC metric ... ok Test 3D SyN with CC metric ... 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 174.160236 174.160236 348.320472 inf 1: 129.301704 129.301704 258.603408 inf 2: 90.003685 90.003685 180.007370 inf 3: 62.023355 62.023355 124.046710 inf 4: 44.031650 44.031650 88.063299 inf 5: 30.138086 30.138086 60.276171 inf 6: 19.769586 19.769586 39.539171 inf 7: 12.200864 12.200864 24.401728 inf 8: 7.030179 7.030179 14.060357 inf 9: 3.932382 3.932382 7.864764 inf Optimizing level 0 0: 50.431440 50.431440 100.862881 inf 1: 42.406259 42.406259 84.812519 inf 2: 34.634311 34.634311 69.268622 inf 3: 27.499932 27.499932 54.999865 inf 4: 22.276122 22.276122 44.552244 inf 5: 18.144578 18.144578 36.289155 inf 6: 14.831776 14.831776 29.663552 inf 7: 12.606386 12.606386 25.212771 inf 8: 14.068786 14.068786 28.137571 inf 9: 13.291431 13.291431 26.582861 inf Static-Reference Residual error: 0.002930 (0.000043) Moving-Reference Residual error :0.002968 (0.000045) Final residual error: 0.004095 (0.000111) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Optimizing level 1 0: -2470.850522 -2470.850522 -4941.701045 inf 1: -2809.035391 -2809.035391 -5618.070783 inf 2: -3097.929180 -3097.929180 -6195.858360 inf 3: -3314.948446 -3314.948446 -6629.896893 inf 4: -3487.392000 -3487.392000 -6974.784000 inf 5: -3687.198100 -3687.198100 -7374.396200 inf 6: -3901.419800 -3901.419800 -7802.839600 inf 7: -4062.786802 -4062.786802 -8125.573603 inf 8: -4204.035022 -4204.035022 -8408.070044 inf 9: -4317.120683 -4317.120683 -8634.241367 inf 10: -4400.328948 -4400.328948 -8800.657896 inf 11: -4472.480246 -4472.480246 -8944.960493 inf 12: -4533.762530 -4533.762530 -9067.525059 0.00381066805447 13: -4576.180550 -4576.180550 -9152.361100 0.00317135627435 14: -4601.501231 -4601.501231 -9203.002462 0.00264119987365 Optimizing level 0 0: -15604.348537 -15604.348537 -31208.697075 inf 1: -15735.173699 -15735.173699 -31470.347397 inf 2: -15827.193833 -15827.193833 -31654.387667 inf 3: -15919.901145 -15919.901145 -31839.802290 inf 4: -15989.430778 -15989.430778 -31978.861557 inf Static-Reference Residual error: 0.002058 (0.000017) Moving-Reference Residual error :0.002026 (0.000016) Final residual error: 0.002855 (0.000047) Pre-align: None Applying zero mask: False Creating scale space from the moving imaok Test 3D SyN with EM metric, Gauss-Newton optimizer ... ge. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Optimizing level 1 0: -23248.088838 -23248.088838 -46496.177675 inf 1: -24224.696019 -24224.696019 -48449.392038 inf 2: -24643.553653 -24643.553653 -49287.107306 inf 3: -25094.155774 -25094.155774 -50188.311549 inf 4: -25644.508102 -25644.508102 -51289.016205 inf 5: -25976.564449 -25976.564449 -51953.128897 inf 6: -26277.148890 -26277.148890 -52554.297779 inf 7: -26571.473989 -26571.473989 -53142.947978 inf 8: -26837.096492 -26837.096492 -53674.192983 inf 9: -27059.015230 -27059.015230 -54118.030459 inf 10: -27254.823759 -27254.823759 -54509.647518 inf 11: -27475.594624 -27475.594624 -54951.189248 inf 12: -27651.003730 -27651.003730 -55302.007460 0.00107625477996 13: -27780.836871 -27780.836871 -55561.673741 0.000925917105584 14: -27897.549180 -27897.549180 -55795.098360 0.000819951957575 15: -27998.179038 -27998.179038 -55996.358076 0.000717260043572 16: -28058.257200 -28058.257200 -56116.514399 0.000623883512661 17: -28083.805034 -28083.805034 -56167.610068 0.000545604426886 18: -28113.886520 -28113.886520 -56227.773040 0.000465642827482 19: -28137.110925 -28137.110925 -56274.221850 0.000388625806647 Optimizing level 0 0: -147007.938166 -147007.938166 -294015.876333 inf 1: -150063.452192 -150063.452192 -300126.904385 inf 2: -152207.966403 -152207.966403 -304415.932807 inf 3: -153752.679211 -153752.679211 -307505.358421 inf 4: -155053.651264 -155053.651264 -310107.302529 inf Static-Reference Residual error: 0.003305 (0.000081) Moving-Reference Residual error :0.003028 (0.000066) Final residual error: 0.005146 (0.000277) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 346.480775 342.803728 689.284503 inf 1: 291.387631 292.951456 584.339087 inf 2: 251.682946 253.268586 504.951533 inf 3: 220.268384 218.766443 439.034827 inf 4: 186.456671 ok Test 2D SyN with EM metric, Gauss-Newton optimizer ... 188.759209 375.215881 inf 5: 156.027283 156.098045 312.125328 inf 6: 128.952217 129.557679 258.509896 inf 7: 107.858514 109.417323 217.275837 inf 8: 93.634469 94.427042 188.061510 inf 9: 75.627442 75.956333 151.583775 inf 10: 60.707502 60.179111 120.886613 inf 11: 48.490357 47.543302 96.033659 inf 12: 35.568786 35.269615 70.838401 0.012411917186 13: 24.651489 24.494067 49.145556 0.0129220824293 14: 16.172697 15.947212 32.119909 0.0136357044006 15: 9.459281 9.430112 18.889393 0.0144980587455 16: 4.743769 4.728759 9.472527 0.0154949892787 17: 2.077247 2.060161 4.137408 0.016641704185 18: 1.422652 1.414828 2.837480 0.0179032543055 19: 0.972011 0.952717 1.924728 0.0190888696133 Optimizing level 0 0: 67.763473 46.896821 114.660293 inf 1: 50.113141 40.524049 90.637189 inf 2: 38.241275 31.723795 69.965071 inf 3: 30.628686 25.896806 56.525492 inf 4: 26.696378 22.857843 49.554221 inf Static-Reference Residual error: 0.004794 (0.000102) Moving-Reference Residual error :0.004949 (0.000105) Final residual error: 0.004654 (0.000183) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.260563 25.935777 51.196341 inf 1: 24.291909 24.782446 49.074355 inf 2: 21.905502 19.816675 41.722177 inf 3: 16.319560 16.287693 32.607252 inf 4: 15.510241 15.323560 30.833801 inf 5: 12.833023 10.664176 23.497199 inf 6: 6.911960 6.402279 13.314239 inf 7: 4.227106 4.539786 8.766892 inf 8: 2.875194 2.799543 5.674738 inf 9: 1.028632 1.103462 2.132094 inf 10: 0.385113 0.588294 0.973407 inf 11: 0.378790 0.469463 0.848253 inf 12: 0.315466 0.250128 0.565594 0.0187608373542 13: 0.309691 0.238778 0.548469 0.0200898020321 14: 0.190588 0.179123 0.369711 0.0210177414203 15: 0.217590 0.200559 0.418149 0.0217283490109 16: 0.184794 0.126621 0.311415 0.0220641257751 17: 0.281238 0.193238 0.474476 0.0218811033207 18: 0.125829 0.138359 0.264188 0.0206767286897 19: 0.170557 0.188336 0.358893 0.0192731241518 20: 0.123527 0.126567 0.250094 0.0161426605476 21: 0.207990 0.181007 0.388997 0.0114627883047 22: 0.154809 0.132260 0.287069 0.00705910865924 23: 0.196801 0.182502 0.379303 0.00566897712645 24: 0.211032 0.187251 0.398284 0.00300179232941 25: 0.136730 0.143651 0.280382 0.00115968665248 26: 0.170191 0.167518 0.337709 0.000917108054183 27: 0.198692 0.144906 0.343598 0.000697020160087 28: 0.142870 0.141998 0.284868 0.000113041903499 29: 0.185604 0.173708 0.359312 0.000924596260835 30: 0.142361 0.118889 0.261250 -0.000370540977552 Optimizing level 1 0: 1.594140 2.008261 3.602400 inf 1: 0.690500 0.838075 1.528575 inf 2: 0.400110 0.497698 0.897808 inf 3: 0.235701 0.300912 0.536613 inf 4: 0.200830 0.266492 0.46ok Test 3D SyN with EM metric, demons-like optimizer ... ok Test 2D SyN with EM metric, demons-like optimizer ... 7322 inf 5: 0.226676 0.275083 0.501758 inf 6: 0.228042 0.283812 0.511853 inf 7: 0.211152 0.253775 0.464927 inf 8: 0.261904 0.306827 0.568731 inf 9: 0.216284 0.294498 0.510783 inf 10: 0.285706 0.321656 0.607361 inf 11: 0.230042 0.316215 0.546257 inf 12: 0.268310 0.336497 0.604807 0.0097785317307 13: 0.270239 0.365102 0.635341 0.00327878493471 14: 0.280673 0.381619 0.662292 -0.000506215479995 Optimizing level 0 0: 5.169310 6.433118 11.602428 inf 1: 2.713145 4.717974 7.431119 inf 2: 1.719758 3.805299 5.525058 inf 3: 1.331604 3.286542 4.618146 inf 4: 1.089693 2.838476 3.928169 inf 5: 0.840253 2.872338 3.712590 inf 6: 0.826263 2.461212 3.287475 inf 7: 0.791384 2.478850 3.270234 inf 8: 0.795025 2.367274 3.162299 inf 9: 0.797022 2.484837 3.281858 inf Static-Reference Residual error: 0.004676 (0.000118) Moving-Reference Residual error :0.006066 (0.000181) Final residual error: 0.007267 (0.000473) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 342.803728 346.480775 689.284503 inf 1: 294.194338 290.386190 584.580529 inf 2: 251.942413 258.204847 510.147259 inf 3: 213.718215 213.491888 427.210103 inf 4: 178.992076 177.054144 356.046220 inf 5: 145.964460 144.012091 289.976551 inf 6: 117.308109 114.614283 231.922392 inf 7: 93.398067 92.001111 185.399178 inf 8: 71.062390 71.677016 142.739406 inf 9: 54.762203 55.194580 109.956783 inf 10: 41.626243 42.337306 83.963549 inf 11: 31.290937 31.816745 63.107682 inf 12: 23.104850 23.097029 46.201879 0.0143802525713 13: 17.081529 16.995519 34.077048 0.0150347305207 14: 13.121821 12.879489 26.001309 0.0156791901255 15: 9.965806 9.906915 19.872721 0.0161908415575 16: 7.475292 7.432413 14.907706 0.0166146139413 17: 5.877192 5.824527 11.701719 0.0169450749436 18: 5.091890 5.086561 10.178451 0.0171597842243 19: 4.572170 4.580415 9.152585 0.0171730722077 Optimizing level 0 0: 191.697038 250.308319 442.005358 inf 1: 164.623238 207.020119 371.643358 inf 2: 153.585180 178.671593 332.256773 inf 3: 143.968185 171.550456 315.518641 inf 4: 134.594087 168.165503 302.759590 inf Static-Reference Residual error: 0.006304 (0.000138) Moving-Reference Residual error :0.006397 (0.000158) Final residual error: 0.005795 (0.000450) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4.,ok dipy.align.tests.test_metrics.test_exceptions ... ok dipy.align.tests.test_metrics.test_EMMetric_image_dynamics ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_parzenhist.test_cubic_spline ... ok dipy.align.tests.test_parzenhist.test_cubic_spline_derivative ... ok dipy.align.tests.test_parzenhist.test_parzen_joint_histogram ... ok dipy.align.tests.test_parzenhist.test_parzen_densities ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_dense ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_sparse ... ok dipy.align.tests.test_parzenhist.test_sample_domain_regular ... ok dipy.align.tests.test_parzenhist.test_exceptions ... ok dipy.align.tests.test_reslice.test_resample ... 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.935777 25.260563 51.196340 inf 1: 27.037444 20.694161 47.731605 inf 2: 13.784599 17.400170 31.184769 inf 3: 9.943231 10.510352 20.453583 inf 4: 6.479765 6.347510 12.827275 inf 5: 3.138036 3.538554 6.676591 inf 6: 1.532194 1.621278 3.153472 inf 7: 0.446067 0.399313 0.845379 inf 8: 0.583351 0.477469 1.060820 inf 9: 0.266034 0.259799 0.525833 inf 10: 0.371923 0.350807 0.722730 inf 11: 0.283530 0.247474 0.531004 inf 12: 0.390005 0.335071 0.725076 0.0221056663649 13: 0.257404 0.309310 0.566714 0.022274083446 14: 0.361977 0.354587 0.716564 0.0218649984619 15: 0.283879 0.263841 0.547720 0.0205758039221 16: 0.338480 0.338796 0.677277 0.0182851818147 17: 0.243377 0.273284 0.516661 0.0134650607416 18: 0.366437 0.300859 0.667297 0.00775868220169 19: 0.240609 0.259311 0.499920 0.00206424498949 20: 0.313076 0.325632 0.638708 0.00223167399382 21: 0.252694 0.254945 0.507639 0.000519713318833 22: 0.298032 0.316239 0.614270 0.00145530740807 23: 0.235446 0.276002 0.511447 0.000782980643687 24: 0.356744 0.346786 0.703530 0.00150563643911 25: 0.259406 0.256541 0.515947 4.22435327605e-06 Optimizing level 1 0: 2.950720 2.337735 5.288455 inf 1: 1.651256 1.349698 3.000953 inf 2: 0.978116 0.760163 1.738278 inf 3: 0.790510 0.634077 1.424587 inf 4: 0.672294 0.519591 1.191884 inf 5: 0.657691 0.527410 1.185102 inf 6: 0.622684 0.497433 1.120117 inf 7: 0.619534 0.443340 1.062874 inf 8: 0.618931 0.438729 1.057660 inf 9: 0.566903 0.447358 1.014261 inf 10: 0.567649 0.427983 0.995632 inf 11: 0.634471 0.484169 1.118640 inf 12: 0.505029 0.391306 0.896335 0.00903869034916 13: 0.730179 0.552234 1.282413 0.00558657346444 14: 0.546126 0.424956 0.971081 0.00192242618804 15: 0.591130 0.468553 1.059683 0.0012156911767 16: 0.548781 0.395463 0.944244 0.000528201385145 17: 0.694040 0.516499 1.210539 0.000722158717477 18: 0.606099 0.402641 1.008740 -0.000298695618693 Optimizing level 0 0: 8.327193 4.504177 12.831370 inf 1: 6.550277 2.961995 9.512272 inf 2: 4.909879 2.340814 7.250693 inf 3: 4.418773 2.064781 6.483554 inf 4: 4.096945 1.712055 5.809000 inf 5: 3.967829 1.758361 5.726191 inf 6: 4.019961 1.706295 5.726256 inf 7: 3.910212 1.580735 5.490948 inf 8: 3.504665 1.555306 5.059971 inf 9: 3.684945 1.485857 5.170802 inf Static-Reference Residual error: 0.003718 (0.000049) Moving-Reference Residual error :0.003919 (0.000054) Final residual error: 0.004489 (0.000091) ok dipy.align.tests.test_scalespace.test_scale_space ... ok dipy.align.tests.test_scalespace.test_scale_space_exceptions ... ok dipy.align.tests.test_streamlinear.test_rigid_parallel_lines ... ok dipy.align.tests.test_streamlinear.test_rigid_real_bundles ... ok dipy.align.tests.test_streamlinear.test_rigid_partial_real_bundles ... ok dipy.align.tests.test_streamlinear.test_stream_rigid ... ok dipy.align.tests.test_streamlinear.test_min_vs_min_fast_precision ... ok dipy.align.tests.test_streamlinear.test_same_number_of_points ... ok dipy.align.tests.test_streamlinear.test_efficient_bmd ... ok dipy.align.tests.test_streamlinear.test_openmp_locks ... ok dipy.align.tests.test_streamlinear.test_from_to_rigid ... ok dipy.align.tests.test_streamlinear.test_matrix44 ... ok dipy.align.tests.test_streamlinear.test_abstract_metric_class ... ok dipy.align.tests.test_streamlinear.test_evolution_of_previous_iterations ... ok dipy.align.tests.test_streamlinear.test_similarity_real_bundles ... ok dipy.align.tests.test_streamlinear.test_affine_real_bundles ... (2, ) (3, ) (2, ) (3, ) [ 88.12211 109.13089 81.60664] 7.98038710888 23 196 [[ 9.99575842e-01 -2.24410391e-02 -1.85616921e-02 -9.17371007e-01] [ 2.91170565e-02 7.82729855e-01 6.21680119e-01 4.98765055e-01] [ 5.77642725e-04 -6.21956890e-01 7.83051271e-01 -1.17084992e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] fun: 7.980386979569833 hess_inv: <6x6 LbfgsInvHessProduct with dtype=float64> jac: array([ 4.52970994e-06, 2.64943623e-04, 0.00000000e+00, 6.75015599e-06, 2.70894418e-05, 5.50670620e-06]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 217 nit: 28 status: 0 success: True x: array([ -0.91734944, 0.49887961, -1.17085305, 2.01197564, -40.01557461, 0.3754392 ]) 0.0001 0.0001 fun: 0.0047654004939004513 hess_inv: <12x12 LbfgsInvHessProduct with dtype=float64> jac: array([-0.00122721, 0.00945051, -0.01480277, -0.0010169 , 0.00482658, -0.00181828, 0.07822429, -0.01035994, -0.00832381, -0.08354409, 0.06683686, 0.00748993]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 1625 nit: 115 status: 0 success: True x: array([ 1.64639833e-04, -4.14422164e-03, -9.19662838e-03, 1.90494437e+00, -1.07396011e+01, -1.25326548e+01, 8.14393978e-01, 8.95913533e-01, 1.02785494e+00, -5.91174257e-02, -1.09617911e-01, -3.01329582e-02]) direc: array([[ 8.11118113e-09, 8.10458439e-08, 4.16805572e-08, 3.40111443e-07, -8.68793573e-07, 9.95078423e-07, 2.18808795e-09, 1.60292846e-08, 1.44309839e-09, 1.83222080e-08, 1.20569878e-08, 1.98151736e-08], [ 4.89233967e-09, 5.00857690e-09, -2.80854707e-09, -2.37862706e-08, -1.93000844e-08, -8.72448097e-08, 1.50920595e-10, -8.78093751e-10, -8.76010719e-10, -1.22465634e-09, 1.00190867e-09, -2.61361705e-11], [ 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -9.81570481e-05, 7.64539764e-04, -1.54567834e-04, 1.45000230e-03, 1.01724470e-02, -5.80370358e-04, 1.55815247e-04, -8.22252367e-05, 6.42614899e-05, 7.50908279e-05, -1.54097795e-04, -1.68905239e-04], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 6.09206844e-04, -5.71573738e-04, 6.66311432e-04, 4.53429329e-03, -4.90569696e-02, 5.24529031e-02, 2.51865679e-04, 3.41858836e-04, 8.21625136e-05, 9.70169737e-04, 9.59193199e-04, 1.31319139e-04], [ 1.73215915e-09, -8.87003615e-11, 2.39892555e-10, 2.09733266e-08, -2.25212441e-08, -3.53266974e-08, 4.18196450e-10, -2.77071086e-10, 3.08637738e-10, -2.46917971e-10, 6.05410179e-10, 3.33384864e-11], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 1.17234260e-03, 2.53857510e-04, 1.97408975e-04, -4.54281511e-03, 4.36002744e-03, 1.02887718e-02, -2.97606582e-05, -1.53124657e-05, -6.209ok dipy.align.tests.test_streamlinear.test_vectorize_streamlines ... ok dipy.align.tests.test_streamlinear.test_x0_input ... ok dipy.align.tests.test_streamlinear.test_compose_decompose_matrix44 ... ok dipy.align.tests.test_streamlinear.test_cascade_of_optimizations_and_threading ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_3d ... ok dipy.align.tests.test_sumsqdiff.test_solve_2d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_solve_3d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_transforms.test_number_of_parameters ... ok dipy.align.tests.test_transforms.test_param_to_matrix_2d ... ok dipy.align.tests.test_transforms.test_param_to_matrix_3d ... ok dipy.align.tests.test_transforms.test_identity_parameters ... ok dipy.align.tests.test_transforms.test_jacobian_functions ... ok dipy.align.tests.test_transforms.test_invalid_transform ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_2d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_3d ... ok dipy.align.tests.test_vector_fields.test_circle ... ok dipy.align.tests.test_vector_fields.test_sphere ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_2d ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests 2D affine transform functions against scipy implementation ... ok Tests 3D affine transform functions against scipy implementation ... ok Creates two random displacement field that exactly map pixels from an input ... ok Creates two random displacement field that exactly map pixels from an input ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_3d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_2d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_random_vector_fields ... ok dipy.align.tests.test_vector_fields.test_gradient_2d ... ok dipy.align.tests.test_vector_fields.test_gradient_3d ... ok dipy.align.tests.test_whole_brain_slr.test_whole_brain_slr ... ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(1.0), array(0.9999999999999999), array(1.0)), (1.0, 1.0, 1.0)) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0038247415134641761, 0.003824741513464177) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_geometry.test_vec2vec_rotmat ... ok dipy.core.tests.test_geometry.test_compose_transformations ... ok dipy.core.tests.test_geometry.test_compose_decompose_matrix ... ok dipy.core.tests.test_geometry.test_perpendicular_directions ... ok dipy.core.tests.test_geometry.test_dist_to_corner ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_gradients.test_deltas ... ok dipy.core.tests.test_gradients.test_qvalues ... ok dipy.core.tests.test_gradients.test_reorient_bvecs ... ok Test that the presence of nan's in b-vectors doesn't raise warnings. ... ok Tests whether we have properly generated bvecs. ... ok dipy.core.tests.test_gradients.test_check_multi_b ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_optimize.test_optimize_new_scipy ... ok dipy.core.tests.test_optimize.test_optimize_old_scipy ... SKIP: Skipping test: test_optimize_old_scipy: Test skipped due to test condition dipy.core.tests.test_optimize.test_sklearn_linear_solver ... ok dipy.core.tests.test_optimize.test_nonnegativeleastsquares ... ok dipy.core.tests.test_optimize.test_spdot ... ok dipy.core.tests.test_optimize.test_sparse_nnls ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_sphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ok dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.denoise.tests.test_ascm.test_ascm_static ... ok dipy.denoise.tests.test_ascm.test_ascm_random_noise ... ok dipy.denoise.tests.test_ascm.test_ascm_rmse_with_nlmeans ... ok dipy.denoise.tests.test_ascm.test_sharpness ... ok dipy.denoise.tests.test_ascm.test_ascm_accuracy ... ok dipy.denoise.tests.test_denoise.test_denoise ... ok Test if the kernel values are correct by comparison against the values ... ok Test if a convolution with a delta spike is equal to the kernel ... ok Test the normalization routine applied after a convolution ... ok Test the kernel for inputs of type Sphere, type int and for input None ... ok dipy.denoise.tests.test_lpca.test_lpca_static ... ok dipy.denoise.tests.test_lpca.test_lpca_random_noise ... ok dipy.denoise.tests.test_lpca.test_lpca_boundary_behaviour ... ok dipy.denoise.tests.test_lpca.test_lpca_rmse ... ok dipy.denoise.tests.test_lpca.test_lpca_sharpness ... ok dipy.denoise.tests.test_lpca.test_lpca_dtype ... ok dipy.denoise.tests.test_lpca.test_lpca_wrong ... ok dipy.denoise.tests.test_lpca.test_phantom ... ok dipy.denoise.tests.test_lpca.test_lpca_ill_conditioned ... ok dipy.denoise.tests.test_lpca.test_lpca_sigma_wrong_shape ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_padding ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_static ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_wrong ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_boundary ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_dtype ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4d_3dsigma_and_threads ... ok dipy.denoise.tests.test_noise_estimate.test_inv_nchi ... ok dipy.denoise.tests.test_noise_estimate.test_piesno ... ok dipy.denoise.tests.test_noise_estimate.test_piesno_type ... ok dipy.denoise.tests.test_noise_estimate.test_estimate_sigma ... ok dipy.denoise.tests.test_noise_estimate.test_pca_noise_estimate ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_static ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_non_local_means.test_scalar_sigma ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_boundary ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_wrong ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_dtype ... ok This test the number of inital direction." ... ok This tests the direction found by the bootstrap direction getter. ... ok This tests the bootstrapping residual. ... ok dipy.direction.tests.test_peaks.test_peak_directions_nl ... ok dipy.direction.tests.test_peaks.test_OdfFit ... ok dipy.direction.tests.test_peaks.test_peak_directions ... ok dipy.direction.tests.test_peaks.test_peak_directions_thorough ... ok dipy.direction.tests.test_peaks.test_difference_with_minmax ... ok dipy.direction.tests.test_peaks.test_degenerative_cases ... ok dipy.direction.tests.test_peaks.test_peaksFromModel ... ok dipy.direction.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.direction.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.direction.tests.test_pmf.test_pmf_from_sh ... ok dipy.direction.tests.test_pmf.test_pmf_from_array ... ok This tests the local model used for the bootstrapping. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:755: RuntimeWarning: invalid value encountered in sqrt leverages = sqrt(1 - H.diagonal()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:755: RuntimeWarning: invalid value encountered in sqrt leverages = sqrt(1 - H.diagonal()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:755: RuntimeWarning: invalid value encountered in sqrt leverages = sqrt(1 - H.diagonal()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:757: RuntimeWarning: divide by zero encountered in divide R = (eye(len(H)) - H) / leverages /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:757: RuntimeWarning: invalid value encountered in divide R = (eye(len(H)) - H) / leverages ok dipy.direction.tests.test_prob_direction_getter.test_ProbabilisticDirectionGetter ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... ok dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.io.tests.test_io_peaks.test_io_peaks ... 70913e-05, 7.41137195e-05, -2.21586416e-04, -1.07531691e-04], [ 7.53696147e-06, 3.39287053e-04, 1.84329086e-04, -2.93472918e-02, 3.45559322e-02, -6.76554146e-03, 4.88670058e-04, 3.70947627e-05, -3.38105331e-04, 1.93950492e-04, -3.54357285e-04, -3.86101378e-04], [ -2.02952612e-10, 3.32612084e-10, -5.57707434e-11, 6.22652975e-09, -1.46507687e-08, -1.22303771e-08, 1.66866412e-10, -1.09686413e-10, 1.05838334e-10, -1.61012404e-10, 2.60841500e-10, 1.69004902e-10]]) fun: 5.8621066374679601e-14 message: 'Optimization terminated successfully.' nfev: 7346 nit: 41 status: 0 success: True x: array([ 1.25044198e-07, -2.82849745e-07, 1.51816061e-07, 4.29520007e-01, -1.45654196e+00, 1.19062893e+00, 9.98805848e-01, 1.00630348e+00, 1.00504045e+00, 2.05804119e-02, 2.50153256e-02, 1.19885715e-02]) first rigid then similarity then affine Static streamlines size 300 Moving streamlines size 300 Static streamlines after length reduction 300 Moving streamlines after length reduction 300 QB static centroids size 9 QB moving centroids size 9 SLR finished in 0.039 seconds. SLR iterations: 0 Progressive Registration is Enabled Translation (3 parameters)... Rigid (6 parameters) ... Similarity (7 parameters) ... Scaling (9 parameters) ... Affine (12 parameters) ... Progressive Registration is Enabled Translation (3 parameters)... Rigid (6 parameters) ... Similarity (7 parameters) ... Scaling (9 parameters) ... Affine (12 parameters) ... Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} fun: 7.598922857205412e-16 hess_inv: <3x3 LbfgsInvHessProduct with dtype=float64> jac: array([ -2.18306411e-08, -2.18306411e-08, -2.18306411e-08]) message: 'CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL' nfev: 12 nit: 2 status: 0 success: True x: array([ -1.59153206e-08, -1.59153206e-08, -1.59153206e-08]) (99.997547741816376, 92.109908765758362, 107.44577018904506) (100.00758641315477, 96.332632984904237, 103.87325977948871) ('Original RMSE', 0.16975863924343038) ('Smaller patch RMSE', 0.05197724542698226) ('Larger patch RMSE', 0.040705631063358054) ('ASCM RMSE', 0.046391124292215181) ('Edge gradient smaller patch', 0.25989152077496414) ('Edge gradient larger patch', 11.765311422858062) ('Edge gradient ASCM', 1.2552007034397121) The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 (99.984303278755746, 92.883035644698822, 108.34789862294276) (100.00658614958765, 99.482778165571176, 100.8252146279106) 299.542120265 101.263728704 cpu count 4 1 72.0576188564 All 20.4352171421 2 37.977617979 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) 3 FILENAME: test_bv_file2.npy PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) Ook dipy.io.tests.test_io_peaks.test_io_save_peaks_error ... ok dipy.io.tests.test_streamline.test_io_streamline ... ERROR dipy.io.tests.test_streamline.test_trackvis ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:22: DeprecationWarning: The `dipy.io.trackvis.save_trk` function is deprecated as of version 0.14 of Dipy and will be removed in a future version. Please use `dipy.io.streamline.save_trk` function instead DeprecationWarning) /usr/lib/python2.7/dist-packages/nibabel/streamlines/trk.py:594: HeaderWarning: Field 'vox_to_ras' in the TRK's header was not recorded. Will continue assuming it's the identity. " the identity."), HeaderWarning) ok dipy.reconst.tests.test_cache.test_basic_cache ... ok Test the calculation of the coefficient of determination ... ok Test k-fold cross-validation ... ok dipy.reconst.tests.test_cross_validation.test_csd_xval ... ok Test that if you try to do this with a model that doesn't have a `predict` ... ok Test the recursive response calibration method. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py:188: UserWarning: Vertices are not on the unit sphere. warnings.warn("Vertices are not on the unit sphere.") ok dipy.reconst.tests.test_csdeconv.test_auto_response ... ok dipy.reconst.tests.test_csdeconv.test_response_from_mask ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:878: UserWarning: No voxel with a FA higher than 1 were found. Try a larger roi or a lower threshold. warnings.warn(msg, UserWarning) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2957: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:80: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2957: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:73: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:324: RuntimeWarning: invalid value encountered in true_divide odf_sh /= Z ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok Test prediction API ... ok Check that we can predict reasonably from multi-voxel fits: ... ok Check that mirroring regularization sphere does not change the result of ... ok We check that the default value of lambda is the expected value with ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok Check the quality of csdfit with high SH order. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok dipy.reconst.tests.test_dki.test_positive_evals ... ok dipy.reconst.tests.test_dki.test_split_dki_param ... ok DKI fits are tested on noise free crossing fiber simulates ... ok Apparent kurtosis coeficients are tested for a spherical kurtosis ... ok dipy.reconst.tests.test_dki.test_dki_predict ... ok dipy.reconst.tests.test_dki.test_carlson_rf ... ok dipy.reconst.tests.test_dki.test_carlson_rd ... ok dipy.reconst.tests.test_dki.test_Wrotate_single_fiber ... ok dipy.reconst.tests.test_dki.test_Wrotate_crossing_fibers ... ok dipy.reconst.tests.test_dki.test_Wcons ... ok dipy.reconst.tests.test_dki.test_spherical_dki_statistics ... ok dipy.reconst.tests.test_dki.test_compare_MK_method ... ok dipy.reconst.tests.test_dki.test_single_voxel_DKI_stats ... ok dipy.reconst.tests.test_dki.test_compare_RK_methods ... ok dipy.reconst.tests.test_dki.test_MK_singularities ... ok dipy.reconst.tests.test_dki.test_dki_errors ... ok dipy.reconst.tests.test_dki.test_kurtosis_maximum ... ok dipy.reconst.tests.test_dki.test_multi_voxel_kurtosis_maximum ... ok dipy.reconst.tests.test_dki_micro.test_single_fiber_model ... ok dipy.reconst.tests.test_dki_micro.test_wmti_model_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_single_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_awf_only ... ok dipy.reconst.tests.test_dki_micro.additional_tortuosity_tests ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi.test_multib0_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok dipy.reconst.tests.test_dti.test_roll_evals ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_odf_with_zeros ... ok dipy.reconst.tests.test_dti.test_tensor_model ... ok dipy.reconst.tests.test_dti.test_indexing_on_tensor_fit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_ga_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_all_zeros ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion ... ok Test model prediction API ... ok dipy.reconst.tests.test_dti.test_eig_from_lo_tri ... ok dipy.reconst.tests.test_dti.test_min_signal_alone ... ok dipy.reconst.tests.test_dti.test_decompose_tensor_nan ... ok dipy.reconst.tests.test_forecast.test_forecast_positive_constrain ... SKIP: Skipping test: test_forecast_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_forecast.test_forecast_csd ... ok dipy.reconst.tests.test_forecast.test_forecast_odf ... ok dipy.reconst.tests.test_forecast.test_forecast_indices ... ok dipy.reconst.tests.test_forecast.test_forecast_predict ... ok dipy.reconst.tests.test_forecast.test_multivox_forecast ... ok dipy.reconst.tests.test_fwdti.test_fwdti_singlevoxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_precision ... ok dipy.reconst.tests.test_fwdti.test_fwdti_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_predictions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_errors ... ok dipy.reconst.tests.test_fwdti.test_fwdti_restore ... ok dipy.reconst.tests.test_fwdti.test_cholesky_functions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_jac_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_standalone_functions ... ok dipy.reconst.tests.test_fwdti.test_md_regularization ... ok dipy.reconst.tests.test_fwdti.test_negative_s0 ... ok dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok Test the implementation of the fitting for a single voxel. ... ok Test fitting with multivoxel data. ... ok Test if errors raised in the module are working correctly. ... ok Test whether setting incorrect mask raises and error ... ok Test whether fitting works for S0 > 1. ... ok Test to check if setting bounds for signal where initial value is ... ok Test the model prediction API. ... ok Test the method of IvimFit class ... ok Test if `shape` in `IvimFit` class gives the correct output. ... ok dipy.reconst.tests.test_ivim.test_multiple_b0 ... ok dipy.reconst.tests.test_ivim.test_no_b0 ... ok Test fitting for noisy signals. This tests whether the threshold condition ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test if the `IvimFit` class returns the correct S0 ... ok Test if the `IvimFit` class returns the correct f ... ok Test if the `IvimFit` class returns the correct D_star ... ok Test if the `IvimFit` class returns the correct D ... ok Test the linear estimates considering a single exponential fit. ... ok Test if the `estimate_f_D_star` returns the correct parameters after a ... ok Test to check the results for the one_stage linear fit. ... ok Test for cases where leastsq fitting fails and the results from a linear ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test error handling of the `_leastsq` method works when unfeasible x0 is ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) ok dipy.reconst.tests.test_mapmri.test_orthogonality_basis_functions ... /usr/lib/python2.7/dist-packages/scipy/integrate/quadpack.py:385: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. warnings.warn(msg, IntegrationWarning) /usr/lib/python2.7/dist-packages/scipy/integrate/quadpack.py:385: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. warnings.warn(msg, IntegrationWarning) ok dipy.reconst.tests.test_mapmri.test_mapmri_number_of_coefficients ... ok Test initialization conditions ... ok Test initialization conditions ... ok Test initialization conditions ... ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting ... ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_static_scale_factor ... ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting_over_radial_order ... ok dipy.reconst.tests.test_mapmri.test_mapmri_pdf_integral_unity ... ok dipy.reconst.tests.test_mapmri.test_mapmri_compare_fitted_pdf_with_multi_tensor ... ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_anisotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:788: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:816: UserWarning: Model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:856: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_isotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_anisotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_isotropic ... ok dipy.reconst.tests.test_mapmri.test_signal_fitting_equality_anisotropic_isotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_design_matrix_separability ... ok dipy.reconst.tests.test_mapmri.test_estimate_radius_with_rtap ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/voxel.py:218: RuntimeWarning: invalid value encountered in true_divide (2 * np.pi * q * radius) ** 2 ok dipy.reconst.tests.test_mapmri.test_positivity_constraint ... SKIP: Skipping test: test_positivity_constraint: Test skipped due to test condition dipy.reconst.tests.test_mapmri.test_laplacian_regularization ... ok dipy.reconst.tests.test_mapmri.test_mapmri_odf ... ok dipy.reconst.tests.test_multi_voxel.test_squash ... /usr/lib/python2.7/dist-packages/numpy/testing/nose_tools/utils.py:763: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/nose_tools/utils.py:763: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/nose_tools/utils.py:763: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_odf.test_gfa ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peakdf.test_PeaksAndMetricsDirectionGetter ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_sfm.test_design_matrix ... ok dipy.reconst.tests.test_sfm.test_sfm ... SKIP: Skipping test: test_sfm: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_predict ... SKIP: Skipping test: test_predict: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_sfm_background ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:414: RuntimeWarning: divide by zero encountered in divide flat_S0[..., None]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:61: RuntimeWarning: divide by zero encountered in divide to_fit[nzb0_idx] = data_no_b0[nzb0_idx] / s0[nzb0_idx[0]] ok dipy.reconst.tests.test_sfm.test_sfm_stick ... ok dipy.reconst.tests.test_sfm.test_sfm_sklearnlinearsolver ... ok dipy.reconst.tests.test_sfm.test_exponential_iso ... SKIP: Skipping test: test_exponential_iso: Test skipped due to test condition dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_order_from_ncoeff ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shm.test_faster_sph_harm ... ok dipy.reconst.tests.test_shm.test_anisotropic_power ... ok Based on the table in: ... ok dipy.reconst.tests.test_shore.test_shore_positive_constrain ... SKIP: Skipping test: test_shore_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_shore.test_shore_fitting_no_constrain_e0 ... ok dipy.reconst.tests.test_shore.test_shore_fitting_constrain_e0 ... SKIP: Skipping test: test_shore_fitting_constrain_e0: Test skipped due to test condition dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_adjustment.test_adjustment ... ok dipy.segment.tests.test_clustering.test_cluster_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_assign ... ok dipy.segment.tests.test_clustering.test_cluster_iter ... ok dipy.segment.tests.test_clustering.test_cluster_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_assign ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_clear ... ok dipy.segment.tests.test_clustering.test_cluster_map_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_map_size ... ok dipy.segment.tests.test_clustering.test_cluster_map_clusters_sizes ... ok dipy.segment.tests.test_clustering.test_cluster_map_get_small_and_large_clusters ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_object ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_subclassing_clustering ... ok dipy.segment.tests.test_feature.test_identity_feature ... ok dipy.segment.tests.test_feature.test_feature_resample ... ok dipy.segment.tests.test_feature.test_feature_center_of_mass ... ok dipy.segment.tests.test_feature.test_feature_midpoint ... ok dipy.segment.tests.test_feature.test_feature_arclength ... ok dipy.segment.tests.test_feature.test_feature_vector_of_endpoints ... ok dipy.segment.tests.test_feature.test_feature_extract ... ok dipy.segment.tests.test_feature.test_subclassing_feature ... ok dipy.segment.tests.test_feature.test_using_python_feature_with_cython_metric ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_metric.test_metric_minimum_average_direct_flip ... ok dipy.segment.tests.test_metric.test_metric_cosine ... ok dipy.segment.tests.test_metric.test_subclassing_metric ... ok dipy.segment.tests.test_metric.test_distance_matrix ... ok dipy.segment.tests.test_mrf.test_grayscale_image ... DF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine None Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape None ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) (256, 256, 5, 4) [[[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] ..., [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.ok dipy.segment.tests.test_mrf.test_grayscale_iter ... ok dipy.segment.tests.test_mrf.test_square_iter ... ok dipy.segment.tests.test_mrf.test_icm_square ... ok dipy.segment.tests.test_mrf.test_classify ... 27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]]] [ 0. 0.25 0.5 0.75] [ 0.11057956 0.12717534 0.1457706 0.16643355] [ 1. 1. 1. 1.] [ 0.07474418 0.08540787 0.20396497 0.42737855] -1821696.02605 -2290789.40113 -2293558.81479 -2295567.12041 -2296986.07786 -2297995.30267 -2298705.6089 -2299230.6191 -2299397.05051 -2299635.54397 -2299901.45469 -2300119.19781 -2300313.67246 -2300436.94961 -2300512.80908 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iok dipy.segment.tests.test_qb.test_qbundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/quickbundles.py:39: DeprecationWarning: Class 'dipy.segment.quickbundles.QuickBundles' is deprecated, instead use module 'dipy.segment.clustering.QuickBundles'. warn(DeprecationWarning(deprecation_msg)) ok dipy.segment.tests.test_qbx.test_3D_points ... ok dipy.segment.tests.test_qbx.test_3D_segments ... ok dipy.segment.tests.test_qbx.test_with_simulated_bundles ... ok dipy.segment.tests.test_qbx.test_with_simulated_bundles2 ... ok dipy.segment.tests.test_qbx.test_circle_parallel_fornix ... ok dipy.segment.tests.test_qbx.test_raise_mdf ... ok dipy.segment.tests.test_qbx.test_qbx_and_merge ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_empty_data ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_wrong_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_shape_uncompatibility ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_2D ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_streamlines ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_python_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_not_order_invariant_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_memory_leaks ... ok dipy.segment.tests.test_rb.test_rb_check_defaults ... ERROR dipy.segment.tests.test_rb.test_rb_disable_slr ... ERROR dipy.segment.tests.test_rb.test_rb_no_verbose_and_mam ... ERROR dipy.segment.tests.test_rb.test_rb_clustermap ... ERROR dipy.segment.tests.test_rb.test_rb_no_neighb ... ERROR dipy.segment.tests.test_rb.test_rb_reduction_mam ... ERROR dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_check_directions ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.sims.tests.test_voxel.test_all_tensor_evecs ... ok Testing symmetry of the elements of the KT ... ok Testing DKI simulations when aligning the same fiber to different axis. ... ok Testing DKI simulations of a crossing fiber ... ok This tests that the trilinear interpolation returns the correct values. ... ok This tests that the binary tissue classifier returns expected ... ok This tests that the thresholdy tissue classifier returns expected ... ok This tests that the act tissue classifier returns expected ... ok This tests that the cmc tissue classifier returns expected ... ok This tests that the Local Tracker behaves as expected for the ... ok This tests that the Probabalistic Direction Getter plays nice ... ok This tests that the ParticleFilteringTracking produces ... ok This tests that the Maximum Deterministic Direction Getter plays nice ... ok This tests that the Bootstrat Peak Direction Getter plays nice ... ok This tests that the Closest Peak Direction Getter plays nice ... ok This tests that the Peaks And Metrics Direction Getter plays nice ... ok This tests that the input affine is properly handled by ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok Test the FBC measures on a set of fibers ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_life.test_streamline_gradients ... ok dipy.tracking.tests.test_life.test_streamline_tensors ... ok dipy.tracking.tests.test_life.test_streamline_signal ... ok dipy.tracking.tests.test_life.test_voxel2streamline ... ok dipy.tracking.tests.test_life.test_FiberModel_init ... ok dipy.tracking.tests.test_life.test_FiberFit ... ok dipy.tracking.tests.test_life.test_fit_data ... ok dipy.tracking.tests.test_localtrack.test_ThresholdTissueClassifier ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_metrics.test_winding ... ok dipy.tracking.tests.test_propagation.test_offset ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok This test checks that the tracking will exclude seeds in both directions. ... ok dipy.tracking.tests.test_propagation.test_eudx_both_directions_errors ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_length ... ok dipy.tracking.tests.test_streamline.test_length_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_unlist_relist_streamlines ... ok dipy.tracking.tests.test_streamline.test_deform_streamlines ... ok dipy.tracking.tests.test_streamline.test_center_and_transform ... ok dipy.tracking.tests.test_streamline.test_select_random_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_select_by_rois ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/streamline.py:432: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: warn(w_s) ok dipy.tracking.tests.test_streamline.test_orient_by_rois ... ok dipy.tracking.tests.test_streamline.test_values_from_volume ... ok dipy.tracking.tests.test_streamline.test_streamlines_generator ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_to_voxel_coordinates_precision ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_target_lb ... ok dipy.tracking.tests.test_utils.test_near_roi ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/utils.py:723: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: 0.866025403784 warn(w_s) ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:483: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(10, 10, 10)) ok dipy.tracking.tests.test_utils.test_random_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:505: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(4, 6, 3)) ok dipy.tracking.tests.test_utils.test_connectivity_matrix_shape ... ok Testing the function unique_coords ... ok dipy.tracking.tests.test_utils.test_reduce_rois ... ok dipy.tracking.tests.test_utils.test_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_get_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_path_length ... ok dipy.tracking.tests.test_utils.test_min_at ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.utils.tests.test_arrfuncs.test_pinv ... ok dipy.utils.tests.test_arrfuncs.test_eigh ... ok dipy.utils.tests.test_omp.test_set_omp_threads ... ok dipy.utils.tests.test_omp.test_default_threads ... ok dipy.utils.tests.test_tripwire.test_is_tripwire ... ok dipy.utils.tests.test_tripwire.test_tripwire ... ok dipy.viz.tests.test_actors.test_bundle_maps ... SKIP: Skipping test: test_bundle_maps: Test skipped due to test condition dipy.viz.tests.test_actors.test_contour_from_roi ... SKIP: Skipping test: test_contour_from_roi: Test skipped due to test condition dipy.viz.tests.test_actors.test_dots ... SKIP: Skipping test: test_dots: Test skipped due to test condition dipy.viz.tests.test_actors.test_labels ... SKIP: Skipping test: test_labels: Test skipped due to test condition dipy.viz.tests.test_actors.test_odf_slicer ... SKIP: Skipping test: test_odf_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_peak_slicer ... SKIP: Skipping test: test_peak_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_points ... SKIP: Skipping test: test_points: Test skipped due to test condition dipy.viz.tests.test_actors.test_slicer ... SKIP: Skipping test: test_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_streamtube_and_line_actors ... SKIP: Skipping test: test_streamtube_and_line_actors: Test skipped due to test condition dipy.viz.tests.test_actors.test_tensor_slicer ... SKIP: Skipping test: test_tensor_slicer: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_colormap ... ok dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ... ok SKIP: No vtk for these tests dipy.viz.tests.test_regtools.test_plot_2d_diffeomorphic_map ... ok SKIP: No vtk for these tests dipy.viz.tests.test_utils.test_trilinear_interp ... ok dipy.viz.tests.test_widgets.test_button_and_slider_widgets ... SKIP: Skipping test: test_button_and_slider_widgets: Test skipped due to test condition dipy.viz.tests.test_widgets.test_text_widget ... SKIP: Skipping test: test_text_widget: Test skipped due to test condition dipy.viz.tests.test_window.test_active_camera ... SKIP: Skipping test: test_active_camera: Test skipped due to test condition dipy.viz.tests.test_window.test_order_transparent ... SKIP: Skipping test: test_order_transparent: Test skipped due to test condition dipy.viz.tests.test_window.test_parallel_projection ... SKIP: Skipping test: test_parallel_projection: Test skipped due to test condition dipy.viz.tests.test_window.test_renderer ... SKIP: Skipping test: test_renderer: Test skipped due to test condition dipy.workflows.tests.test_align.test_reslice ... ok dipy.workflows.tests.test_docstring_parser.test_signature ... ok dipy.workflows.tests.test_docstring_parser.test_summary ... ok dipy.workflows.tests.test_docstring_parser.test_extended_summary ... ok dipy.workflows.tests.test_docstring_parser.test_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_other_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_returns ... ok dipy.workflows.tests.test_docstring_parser.test_notes ... ok dipy.workflows.tests.test_docstring_parser.test_references ... ok dipy.workflows.tests.test_docstring_parser.test_examples ... ok dipy.workflows.tests.test_docstring_parser.test_index ... ok dipy.workflows.tests.test_docstring_parser.test_str ... ok dipy.workflows.tests.test_docstring_parser.test_parameters_without_extended_description ... ok dipy.workflows.tests.test_docstring_parser.test_raises ... ok dipy.workflows.tests.test_docstring_parser.test_warns ... ok dipy.workflows.tests.test_docstring_parser.test_see_also ... ok dipy.workflows.tests.test_docstring_parser.test_empty_first_line ... ok dipy.workflows.tests.test_docstring_parser.test_duplicate_signature ... ok dipy.workflows.tests.test_iap.test_iap ... ok dipy.workflows.tests.test_iap.test_iap_epilog ... ok dipy.workflows.tests.test_iap.test_flow_runner ... ok dipy.workflows.tests.test_io.test_io_info ... ok dipy.workflows.tests.test_masking.test_mask ... ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csa ... ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csd ... ok dipy.workflows.tests.test_reconst_dki.test_reconst_dki ... ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_wls ... ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_nlls ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_laplacian ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_none ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_both ... SKIP: Skipping test: test_reconst_mmri_both: Test skipped due to test condition dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_positivity ... SKIP: Skipping test: test_reconst_mmri_positivity: Test skipped due to test condition dipy.workflows.tests.test_segment.test_median_otsu_flow ... ok dipy.workflows.tests.test_tracking.test_det_track ... ok dipy.workflows.tests.test_workflow.test_force_overwrite ... ok dipy.workflows.tests.test_workflow.test_get_sub_runs ... ok dipy.workflows.tests.test_workflow.test_run ... ok Set numpy print options to "legacy" for new versions of numpy ... ok dipy.testing.tests.test_decorators.test_skipper ... ok dipy.testing.tests.test_memory.test_get_type_refcount ... ok ====================================================================== ERROR: dipy.io.tests.test_streamline.test_io_streamline ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests/test_streamline.py", line 143, in test_io_streamline tfile = nib.streamlines.load(fname) File "/usr/lib/python2.7/dist-packages/nibabel/streamlines/__init__.py", line 96, in load return tractogram_file.load(fileobj, lazy_load=lazy_load) File "/usr/lib/python2.7/dist-packages/nibabel/streamlines/trk.py", line 372, in load arr_seqs = create_arraysequences_from_generator(trk_reader, n=3) File "/usr/lib/python2.7/dist-packages/nibabel/streamlines/array_sequence.py", line 376, in create_arraysequences_from_generator for data in gen: File "/usr/lib/python2.7/dist-packages/nibabel/streamlines/trk.py", line 683, in _read buffer=f.read(nb_pts * pts_and_scalars_size)) TypeError: buffer is too small for requested array ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_check_defaults ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 29, in test_rb_check_defaults rb = RecoBundles(f, clust_thr=10) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 63, in __init__ seed=seed) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 96, in _cluster_streamlines nb_pts, None, rng, self.verbose) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_disable_slr ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 42, in test_rb_disable_slr rb = RecoBundles(f, clust_thr=10) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 63, in __init__ seed=seed) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 96, in _cluster_streamlines nb_pts, None, rng, self.verbose) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_no_verbose_and_mam ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 58, in test_rb_no_verbose_and_mam rb = RecoBundles(f, clust_thr=10, verbose=False) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 63, in __init__ seed=seed) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 96, in _cluster_streamlines nb_pts, None, rng, self.verbose) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_clustermap ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 75, in test_rb_clustermap cluster_map = qbx_and_merge(f, thresholds=[40, 25, 20, 10]) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_no_neighb ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 102, in test_rb_no_neighb rb = RecoBundles(b, clust_thr=10) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 63, in __init__ seed=seed) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 96, in _cluster_streamlines nb_pts, None, rng, self.verbose) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ====================================================================== ERROR: dipy.segment.tests.test_rb.test_rb_reduction_mam ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py", line 114, in test_rb_reduction_mam rb = RecoBundles(f, clust_thr=10, verbose=True) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 63, in __init__ seed=seed) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/bundles.py", line 96, in _cluster_streamlines nb_pts, None, rng, self.verbose) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/clustering.py", line 716, in qbx_and_merge sample_streamlines = set_number_of_points(streamlines, nb_pts) File "dipy/tracking/streamlinespeed.pyx", line 340, in dipy.tracking.streamlinespeed.set_number_of_points ValueError: Little-endian buffer not supported on big-endian compiler ---------------------------------------------------------------------- Ran 688 tests in 780.537s FAILED (SKIP=30, errors=7) teration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 41 >> Iteration: 42 >> Iteration: 43 >> Iteration: 44 >> Iteration: 45 >> Iteration: 46 >> Iteration: 47 >> Iteration: 48 >> Iteration: 49 >> Iteration: 50 >> Iteration: 51 >> Iteration: 52 >> Iteration: 53 >> Iteration: 54 >> Iteration: 55 >> Iteration: 56 >> Iteration: 57 >> Iteration: 58 >> Iteration: 59 >> Iteration: 60 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 Resampled to 20 points Size is 0.184 MB Duration of resampling is 0.000 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 401 random streamlines Duration 0.005 sec. # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 # Cluster streamlines using QBx Tractogram has 320 streamlines Size is 0.178 MB Distance threshold 10.000 # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 0.00016713142395 14 0.00214982032776 14 0.408732891083 180 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195713]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 Running in parallel! [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Optimizing level 3 Optimizing level 2 Optimizing level 1 Optimizing level 0 make[1]: *** [debian/rules:88: override_dh_auto_install] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:30: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190108-2029 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 690520 Build-Time: 1132 Distribution: disco Fail-Stage: build Host Architecture: s390x Install-Time: 22 Job: dipy_0.14.0-1.dsc Machine Architecture: s390x Package: dipy Package-Time: 1158 Source-Version: 0.14.0-1 Space: 690520 Status: attempted Version: 0.14.0-1 -------------------------------------------------------------------------------- Finished at 20190108-2029 Build needed 00:19:18, 690520k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15910427 Scanning for processes to kill in build PACKAGEBUILD-15910427