https://launchpad.net/ubuntu/+archive/test-rebuild-20181220-gcc9/+build/15936756 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-005 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Jan 03:10:56 ntpdate[1802]: adjust time server 10.211.37.1 offset -0.072407 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-15936756 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 Starting target for build PACKAGEBUILD-15936756 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco main' 'deb http://ftpmaster.internal/ubuntu disco main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-15936756 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 Adding trusted keys to build-PACKAGEBUILD-15936756 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 Updating target for build PACKAGEBUILD-15936756 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf Packages [959 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:6 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8650 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco InRelease [15.4 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco InRelease [15.4 kB] Get:9 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5170 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main armhf Packages [13.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco/multiverse armhf Packages [127 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main Translation-en [9512 B] Get:13 http://ftpmaster.internal/ubuntu disco/multiverse Translation-en [113 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf Packages [142 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main Translation-en [26.9 kB] Fetched 16.1 MB in 6s (2576 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libgcc-9-dev libstdc++-9-dev The following packages will be upgraded: binutils binutils-arm-linux-gnueabihf binutils-common cpp dash dpkg dpkg-dev e2fslibs e2fsprogs g++ gcc grep init init-system-helpers libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc1 libgnutls30 libgomp1 libmpfr6 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++6 libubsan1 libzstd1 sed tar tzdata 37 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After this operation, 69.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf tar armhf 1.30+dfsg-4 [218 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf gcc-9-base armhf 9-20190109-0ubuntu1 [187 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libgcc1 armhf 1:9-20190109-0ubuntu1 [37.5 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf dpkg armhf 1.19.2ubuntu2 [1056 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libstdc++6 armhf 9-20190109-0ubuntu1 [454 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-11ubuntu1 [2150 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-3ubuntu1 [78.4 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf grep armhf 3.3-1 [138 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.7-1 [181 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf init-system-helpers all 1.56+nmu1 [38.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libext2fs2 armhf 1.44.5-1 [145 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf e2fsprogs armhf 1.44.5-1 [492 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf init armhf 1.56+nmu1 [6080 B] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-2 [7016 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-2 [72.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libzstd1 armhf 1.3.8+dfsg-3 [195 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libgnutls30 armhf 3.6.5-2ubuntu1 [700 kB] Get:18 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main armhf libbinutils armhf 2.31.1-11ubuntu1 [309 kB] Get:19 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main armhf binutils armhf 2.31.1-11ubuntu1 [3348 B] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf libcom-err2 armhf 1.44.5-1 [8468 B] Get:21 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu disco/main armhf binutils-common armhf 2.31.1-11ubuntu1 [194 kB] Get:22 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf cpp-9 armhf 9-20190109-0ubuntu1 [5806 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libss2 armhf 1.44.5-1 [9324 B] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libsqlite3-0 armhf 3.26.0-3 [449 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018i-1 [189 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libmpfr6 armhf 4.0.2~rc1-1 [196 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf e2fslibs armhf 1.44.5-1 [2704 B] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libassuan0 armhf 2.5.2-1 [28.7 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libcomerr2 armhf 1.44.5-1 [2700 B] Get:32 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libcc1-0 armhf 9-20190109-0ubuntu1 [34.2 kB] Get:33 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libgomp1 armhf 9-20190109-0ubuntu1 [78.3 kB] Get:34 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libatomic1 armhf 9-20190109-0ubuntu1 [7068 B] Get:35 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libasan5 armhf 9-20190109-0ubuntu1 [385 kB] Get:36 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libubsan1 armhf 9-20190109-0ubuntu1 [120 kB] Get:37 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libgcc-9-dev armhf 9-20190109-0ubuntu1 [685 kB] Get:38 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf gcc-9 armhf 9-20190109-0ubuntu1 [6382 kB] Get:39 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libstdc++-9-dev armhf 9-20190109-0ubuntu1 [1667 kB] Get:40 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf g++-9 armhf 9-20190109-0ubuntu1 [6586 kB] Get:41 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf g++ armhf 4:9-20181126-1ubuntu3 [1584 B] Get:42 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf gcc armhf 4:9-20181126-1ubuntu3 [5196 B] Get:43 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf cpp armhf 4:9-20181126-1ubuntu3 [42.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.1 MB in 1s (25.6 MB/s) (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-4_armhf.deb ... Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-4) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_armhf.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-3ubuntu1_armhf.deb ... Unpacking dash (0.5.10.2-3ubuntu1) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-3ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_armhf.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_armhf.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_armhf.deb ... Unpacking libext2fs2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:armhf (1.44.5-1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_armhf.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../init_1.56+nmu1_armhf.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../gcc-9-base_9-20190109-0ubuntu1_armhf.deb ... Unpacking gcc-9-base:armhf (9-20190109-0ubuntu1) ... Setting up gcc-9-base:armhf (9-20190109-0ubuntu1) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.8-1build2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_armhf.deb ... Unpacking libsemanage1:armhf (2.8-2) over (2.8-1build2) ... Setting up libsemanage1:armhf (2.8-2) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3_armhf.deb ... Unpacking libzstd1:armhf (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:armhf (1.3.8+dfsg-3) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:armhf (3.6.5-2ubuntu1) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9-20190109-0ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:9-20190109-0ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:armhf (1:9-20190109-0ubuntu1) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../libstdc++6_9-20190109-0ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (9-20190109-0ubuntu1) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:armhf (9-20190109-0ubuntu1) ... (Reading database ... 12407 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.44.5-1_armhf.deb ... Unpacking libcom-err2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../01-libss2_1.44.5-1_armhf.deb ... Unpacking libss2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../02-libsqlite3-0_3.26.0-3_armhf.deb ... Unpacking libsqlite3-0:armhf (3.26.0-3) over (3.26.0-2) ... Preparing to unpack .../03-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) over (2018g-1) ... Preparing to unpack .../04-binutils-arm-linux-gnueabihf_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../05-libbinutils_2.31.1-11ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../06-binutils_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../07-binutils-common_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../08-libmpfr6_4.0.2~rc1-1_armhf.deb ... Unpacking libmpfr6:armhf (4.0.2~rc1-1) over (4.0.1-2) ... Selecting previously unselected package cpp-9. Preparing to unpack .../09-cpp-9_9-20190109-0ubuntu1_armhf.deb ... Unpacking cpp-9 (9-20190109-0ubuntu1) ... 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Preparing to unpack .../23-libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../24-e2fslibs_1.44.5-1_armhf.deb ... Unpacking e2fslibs:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../25-libassuan0_2.5.2-1_armhf.deb ... Unpacking libassuan0:armhf (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../26-libcomerr2_1.44.5-1_armhf.deb ... Unpacking libcomerr2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libcom-err2:armhf (1.44.5-1) ... Setting up libgomp1:armhf (9-20190109-0ubuntu1) ... Setting up libatomic1:armhf (9-20190109-0ubuntu1) ... Setting up libss2:armhf (1.44.5-1) ... Setting up libcc1-0:armhf (9-20190109-0ubuntu1) ... Setting up e2fslibs:armhf (1.44.5-1) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 10 03:11:29 UTC 2019. Universal Time is now: Thu Jan 10 03:11:29 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libmpfr6:armhf (4.0.2~rc1-1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up binutils-common:armhf (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up cpp-9 (9-20190109-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.26.0-3) ... Setting up libcomerr2:armhf (1.44.5-1) ... Setting up libasan5:armhf (9-20190109-0ubuntu1) ... Setting up libassuan0:armhf (2.5.2-1) ... Setting up libubsan1:armhf (9-20190109-0ubuntu1) ... Setting up cpp (4:9-20181126-1ubuntu3) ... Setting up libgcc-9-dev:armhf (9-20190109-0ubuntu1) ... Setting up libbinutils:armhf (2.31.1-11ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-11ubuntu1) ... Setting up libstdc++-9-dev:armhf (9-20190109-0ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gcc-9 (9-20190109-0ubuntu1) ... Setting up g++-9 (9-20190109-0ubuntu1) ... Setting up gcc (4:9-20181126-1ubuntu3) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Setting up g++ (4:9-20181126-1ubuntu3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15936756 armhf disco -c chroot:build-PACKAGEBUILD-15936756 --arch=armhf --dist=disco --nolog 'lammps_0~20180822.gitb47e49223+dfsg1-2.dsc' Initiating build PACKAGEBUILD-15936756 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-005.buildd +==============================================================================+ | lammps 0~20180822.gitb47e49223+dfsg1-2 (armhf) 10 Jan 2019 03:11 | +==============================================================================+ Package: lammps Version: 0~20180822.gitb47e49223+dfsg1-2 Source Version: 0~20180822.gitb47e49223+dfsg1-2 Distribution: disco Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/lammps-N2scQG/lammps-0~20180822.gitb47e49223+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/lammps-N2scQG' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15936756/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- lammps_0~20180822.gitb47e49223+dfsg1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-3vN5hv/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-3vN5hv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3vN5hv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-3vN5hv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3vN5hv/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-3vN5hv/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (108 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-3vN5hv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13353 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev Filtered Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<>/resolver-hMMGyP/apt_archive/sbuild-build-depends-lammps-dummy.deb'. Ign:1 copy:/<>/resolver-hMMGyP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hMMGyP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hMMGyP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hMMGyP/apt_archive ./ Sources [310 B] Get:5 copy:/<>/resolver-hMMGyP/apt_archive ./ Packages [634 B] Fetched 3063 B in 0s (117 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install lammps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: g++-8 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-9 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls1 libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.7.1 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-9-dev libgfortran5 libgif-dev libgif7 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler82 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool libtwolame0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-155 libx265-165 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff isoquery lrzip libitpp-dev liblapack-doc libbluray-bdj libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev cups-common libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libhdf4-doc hdf4-tools libhdf5-doc libhwloc-contrib-plugins libice-doc icu-doc liblcms2-utils libtool-doc liblzma-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin openmpi-doc opus-tools pciutils postgresql-doc-11 proj-bin qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins librsvg2-bin lm-sensors libsm-doc speex sqlite3-doc libsuperlu-doc gcj-jdk vtk6-doc vtk6-examples java-virtual-machine libx11-doc libxcb-doc libxerces-c-doc libxext-doc libxt-doc m4-doc apparmor less www-browser opencl-icd libpoclu-dev keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk python-attr-doc python-cryptography-doc python-cryptography-vectors python-enum34-doc python-future-doc python-numpy python-nacl-doc python-openssl-doc python-openssl-dbg python-pil-doc python-pil-dbg python-setuptools python-trie-doc python-twisted-bin-dbg python-gtk2 python-glade2 python-pampy python-qt3 python-serial python-wxgtk3.0 python-txaio-doc mayavi2 python2-doc python2.7-doc binfmt-support tcl-doc tcl-tclreadline tcl8.6-doc tk-doc tk8.6-doc Recommended packages: python-dev curl | wget | lynx libaacs0 libpam-cap dbus libarchive-cpio-perl proj-bin libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs gstreamer1.0-plugins-base javascript-common krb5-locales libcoarrays-openmpi-dev libpng-tools poppler-data publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0 libgl1-mesa-glx librsvg2-common libsasl2-modules va-driver-all | va-driver vdpau-driver-all | vdpau-driver libwacom-bin xauth libmail-sendmail-perl python-click python-olefile xterm | x-terminal-emulator The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-9 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls1 libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.7.1 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-9-dev libgfortran5 libgif-dev libgif7 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler82 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool libtwolame0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-155 libx265-165 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-lammps-dummy shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 514 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After this operation, 1123 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hMMGyP/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [960 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libgfortran5 armhf 9-20190109-0ubuntu1 [247 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf libxdmcp6 armhf 1:1.1.2-3 [9316 B] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libxcb1 armhf 1.13.1-2 [40.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libx11-data all 2:1.6.7-1 [113 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libx11-6 armhf 2:1.6.7-1 [515 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf man-db armhf 2.8.5-1 [1068 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libogg0 armhf 1.3.2-1 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libglvnd0 armhf 1.1.0-1 [48.5 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-common all 2.4.95-1 [5000 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libdrm2 armhf 2.4.95-1 [26.7 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libexpat1 armhf 2.2.6-1 [60.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf libwayland-server0 armhf 1.16.0-1ubuntu2 [23.6 kB] Get:20 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf libgfortran-9-dev armhf 9-20190109-0ubuntu1 [298 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libgbm1 armhf 18.2.8-2ubuntu1 [22.5 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf libglapi-mesa armhf 18.2.8-2ubuntu1 [30.0 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libwayland-client0 armhf 1.16.0-1ubuntu2 [18.7 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libx11-xcb1 armhf 2:1.6.7-1 [9104 B] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri2-0 armhf 1.13.1-2 [6676 B] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri3-0 armhf 1.13.1-2 [6288 B] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-present0 armhf 1.13.1-2 [5424 B] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-sync1 armhf 1.13.1-2 [8240 B] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xfixes0 armhf 1.13.1-2 [9004 B] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libxshmfence1 armhf 1.3-1 [4792 B] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libegl-mesa0 armhf 18.2.8-2ubuntu1 [72.4 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libegl1 armhf 1.1.0-1 [26.3 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libgles2 armhf 1.1.0-1 [17.9 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libcap2-bin armhf 1:2.25-1.2 [20.1 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libgstreamer1.0-0 armhf 1.14.4-1 [793 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf liborc-0.4-0 armhf 1:0.4.28-3.1 [117 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf iso-codes all 4.1-1 [2632 kB] Get:39 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf gfortran-9 armhf 9-20190109-0ubuntu1 [6158 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf libgstreamer-plugins-base1.0-0 armhf 1.14.4-1ubuntu1 [620 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libhyphen0 armhf 2.8.8-5 [24.1 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libicu63 armhf 63.1-5 [7991 kB] Get:43 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu disco/main armhf gfortran armhf 4:9-20181126-1ubuntu3 [1344 B] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8 armhf 2.0.0-0ubuntu2 [90.0 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:46 http://ftpmaster.internal/ubuntu disco/universe armhf libdouble-conversion1 armhf 3.1.0-2 [37.7 kB] Get:47 http://ftpmaster.internal/ubuntu disco/universe armhf libpcre2-16-0 armhf 10.32-3 [146 kB] Get:48 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5core5a armhf 5.11.3+dfsg-2ubuntu1 [1648 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6 armhf 2.8.1-2ubuntu2 [280 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf ucf all 3.0038 [50.5 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1 armhf 2.13.0-5ubuntu3 [93.9 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig armhf 2.13.0-5ubuntu3 [168 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main armhf libgraphite2-3 armhf 1.3.12-1 [63.1 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main armhf libharfbuzz0b armhf 2.3.0-1 [327 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main armhf x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main armhf libice6 armhf 2:1.0.9-2 [33.5 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main armhf libevdev2 armhf 1.6.0+dfsg-1 [23.5 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main armhf libmtdev1 armhf 1.1.5-1ubuntu3 [12.7 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main armhf libgudev-1.0-0 armhf 1:232-2 [11.7 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main armhf libwacom-common all 0.31-1 [38.1 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main armhf libwacom2 armhf 0.31-1 [15.4 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main armhf libinput-bin armhf 1.12.4-1 [13.0 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main armhf libinput10 armhf 1.12.4-1 [87.6 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main armhf libdbus-1-3 armhf 1.12.10-1ubuntu2 [154 kB] Get:67 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5dbus5 armhf 5.11.3+dfsg-2ubuntu1 [173 kB] Get:68 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5network5 armhf 5.11.3+dfsg-2ubuntu1 [561 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [9704 B] Get:71 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shm0 armhf 1.13.1-2 [5380 B] Get:72 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-util1 armhf 0.4.0-0ubuntu3 [10.3 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-image0 armhf 0.4.0-1build1 [11.1 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-keysyms1 armhf 0.4.0-1 [7796 B] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-randr0 armhf 1.13.1-2 [15.3 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render0 armhf 1.13.1-2 [13.9 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render-util0 armhf 0.3.9-1 [8858 B] Get:78 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shape0 armhf 1.13.1-2 [5644 B] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xinerama0 armhf 1.13.1-2 [5128 B] Get:80 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xkb1 armhf 1.13.1-2 [26.1 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main armhf libxi6 armhf 2:1.7.9-1 [26.1 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main armhf xkb-data all 2.23.1-1ubuntu1.18.10.1 [325 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main armhf libxkbcommon0 armhf 0.8.2-1 [86.2 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [12.1 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:86 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5gui5 armhf 5.11.3+dfsg-2ubuntu1 [2230 kB] Get:87 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5positioning5 armhf 5.11.3+dfsg-2 [161 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-common-data armhf 0.7-4ubuntu4 [21.4 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-common3 armhf 0.7-4ubuntu4 [18.2 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main armhf libavahi-client3 armhf 0.7-4ubuntu4 [21.7 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5support0 armhf 1.16.2-1 [27.4 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main armhf libk5crypto3 armhf 1.16.2-1 [83.1 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main armhf libkeyutils1 armhf 1.5.9-9.3 [8660 B] Get:94 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-3 armhf 1.16.2-1 [235 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi-krb5-2 armhf 1.16.2-1 [101 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main armhf libcups2 armhf 2.2.10-3 [179 kB] Get:97 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5widgets5 armhf 5.11.3+dfsg-2ubuntu1 [1937 kB] Get:98 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5printsupport5 armhf 5.11.3+dfsg-2ubuntu1 [172 kB] Get:99 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5qml5 armhf 5.11.3-2build1 [1069 kB] Get:100 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5quick5 armhf 5.11.3-2build1 [1061 kB] Get:101 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5sensors5 armhf 5.11.3-2 [95.2 kB] Get:102 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5webchannel5 armhf 5.11.3-2 [41.8 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main armhf libbrotli1 armhf 1.0.7-2 [259 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main armhf libwoff1 armhf 1.0.2-1build1 [35.3 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu3 [533 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main armhf libxslt1.1 armhf 1.1.32-2 [131 kB] Get:108 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5webkit5 armhf 5.212.0~alpha2-19ubuntu1 [9314 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main armhf libxxf86vm1 armhf 1:1.1.4-1 [9770 B] Get:110 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-minimal armhf 2.7.15-5 [335 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main armhf python2.7-minimal armhf 2.7.15-5 [1100 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main armhf python2-minimal armhf 2.7.15-3 [28.1 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main armhf python-minimal armhf 2.7.15-3 [5996 B] Get:114 http://ftpmaster.internal/ubuntu disco/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:115 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-stdlib armhf 2.7.15-5 [1833 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main armhf python2.7 armhf 2.7.15-5 [239 kB] Get:117 http://ftpmaster.internal/ubuntu disco/main armhf libpython2-stdlib armhf 2.7.15-3 [7728 B] Get:118 http://ftpmaster.internal/ubuntu disco/main armhf libpython-stdlib armhf 2.7.15-3 [5824 B] Get:119 http://ftpmaster.internal/ubuntu disco/main armhf python2 armhf 2.7.15-3 [26.5 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main armhf python armhf 2.7.15-3 [7828 B] Get:121 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.175-1 [41.1 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main armhf libfribidi0 armhf 1.0.5-3 [24.2 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main armhf shared-mime-info armhf 1.10-1 [426 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-9 [46.0 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main armhf libedit2 armhf 3.1-20181209-1 [71.3 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main armhf openssh-client armhf 1:7.9p1-4 [537 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-2 [186 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main armhf automake all 1:1.16.1-4 [522 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-9 [412 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main armhf cmake-data all 3.13.2-1 [1457 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main armhf libarchive13 armhf 3.3.3-3 [268 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main armhf libroken18-heimdal armhf 7.5.0+dfsg-2.1 [34.0 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-2.1 [138 kB] Get:141 http://ftpmaster.internal/ubuntu disco/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-2.1 [24.0 kB] Get:142 http://ftpmaster.internal/ubuntu disco/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-2.1 [76.7 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main armhf libwind0-heimdal armhf 7.5.0+dfsg-2.1 [47.1 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-2.1 [87.8 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-2.1 [167 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-2.1 [13.1 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-2.1 [78.7 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main armhf libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main armhf libldap-2.4-2 armhf 2.4.46+dfsg-5ubuntu3 [131 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main armhf libnghttp2-14 armhf 1.35.1-1 [68.3 kB] Get:153 http://ftpmaster.internal/ubuntu disco/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [49.2 kB] Get:154 http://ftpmaster.internal/ubuntu disco/main armhf libcurl4 armhf 7.61.0-1ubuntu2.2 [185 kB] Get:155 http://ftpmaster.internal/ubuntu disco/main armhf libjsoncpp1 armhf 1.7.4-3 [65.9 kB] Get:156 http://ftpmaster.internal/ubuntu disco/main armhf librhash0 armhf 1.3.7-1 [106 kB] Get:157 http://ftpmaster.internal/ubuntu disco/main armhf libuv1 armhf 1.24.0-1 [58.1 kB] Get:158 http://ftpmaster.internal/ubuntu disco/main armhf cmake armhf 3.13.2-1 [2832 kB] Get:159 http://ftpmaster.internal/ubuntu disco/universe armhf cython armhf 0.28.4-1build1 [1978 kB] Get:160 http://ftpmaster.internal/ubuntu disco/main armhf libtool all 2.4.6-6 [195 kB] Get:161 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:162 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:163 http://ftpmaster.internal/ubuntu disco/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:164 http://ftpmaster.internal/ubuntu disco/main armhf dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:165 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-3 [72.1 kB] Get:166 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-3 [69.6 kB] Get:167 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-9 [833 kB] Get:168 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:169 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.21 [233 kB] Get:170 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 11.5.3ubuntu1 [888 kB] Get:171 http://ftpmaster.internal/ubuntu disco/main armhf mysql-common all 5.8+1.0.5 [7352 B] Get:172 http://ftpmaster.internal/ubuntu disco/main armhf libmysqlclient20 armhf 5.7.24-2 [754 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main armhf libmysqlclient-dev armhf 5.7.24-2 [1108 kB] Get:175 http://ftpmaster.internal/ubuntu disco/main armhf default-libmysqlclient-dev armhf 1.0.5 [3792 B] Get:176 http://ftpmaster.internal/ubuntu disco/universe armhf gdal-data all 2.3.2+dfsg-4 [511 kB] Get:177 http://ftpmaster.internal/ubuntu disco/universe armhf hdf5-helpers armhf 1.10.0-patch1+docs-4build2 [12.3 kB] Get:178 http://ftpmaster.internal/ubuntu disco/main armhf libnl-3-200 armhf 3.4.0-1 [46.1 kB] Get:179 http://ftpmaster.internal/ubuntu disco/main armhf libnl-route-3-200 armhf 3.4.0-1 [124 kB] Get:180 http://ftpmaster.internal/ubuntu disco/main armhf libibverbs1 armhf 21.0-1 [43.1 kB] Get:181 http://ftpmaster.internal/ubuntu disco/main armhf ibverbs-providers armhf 21.0-1 [18.5 kB] Get:182 http://ftpmaster.internal/ubuntu disco/main armhf icu-devtools armhf 63.1-5 [163 kB] Get:183 http://ftpmaster.internal/ubuntu disco/universe armhf libaec0 armhf 1.0.2-1 [19.1 kB] Get:184 http://ftpmaster.internal/ubuntu disco/universe armhf libaom0 armhf 1.0.0-3 [775 kB] Get:185 http://ftpmaster.internal/ubuntu disco/main armhf libblas3 armhf 3.8.0-2 [98.5 kB] Get:186 http://ftpmaster.internal/ubuntu disco/main armhf liblapack3 armhf 3.8.0-2 [1619 kB] Get:187 http://ftpmaster.internal/ubuntu disco/universe armhf libarpack2 armhf 3.6.3-1 [78.3 kB] Get:188 http://ftpmaster.internal/ubuntu disco/universe armhf libsuperlu5 armhf 5.2.1+dfsg1-3build1 [131 kB] Get:189 http://ftpmaster.internal/ubuntu disco/universe armhf libarmadillo9 armhf 1:9.200.6+dfsg-1 [83.7 kB] Get:190 http://ftpmaster.internal/ubuntu disco/main armhf libblas-dev armhf 3.8.0-2 [105 kB] Get:191 http://ftpmaster.internal/ubuntu disco/main armhf liblapack-dev armhf 3.8.0-2 [1667 kB] Get:192 http://ftpmaster.internal/ubuntu disco/universe armhf libarpack2-dev armhf 3.6.3-1 [89.3 kB] Get:193 http://ftpmaster.internal/ubuntu disco/universe armhf libsz2 armhf 1.0.2-1 [5072 B] Get:194 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-100 armhf 1.10.0-patch1+docs-4build2 [1210 kB] Get:195 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8-dev armhf 2.0.0-0ubuntu2 [203 kB] Get:196 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:197 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:198 http://ftpmaster.internal/ubuntu disco/universe armhf libaec-dev armhf 1.0.2-1 [16.3 kB] Get:199 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4build2 [91.2 kB] Get:200 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-dev armhf 1.10.0-patch1+docs-4build2 [3463 kB] Get:201 http://ftpmaster.internal/ubuntu disco/universe armhf libsuperlu-dev armhf 5.2.1+dfsg1-3build1 [16.3 kB] Get:202 http://ftpmaster.internal/ubuntu disco/universe armhf libarmadillo-dev armhf 1:9.200.6+dfsg-1 [356 kB] Get:203 http://ftpmaster.internal/ubuntu disco/universe armhf libva2 armhf 2.3.0-2 [42.8 kB] Get:204 http://ftpmaster.internal/ubuntu disco/universe armhf libva-drm2 armhf 2.3.0-2 [6060 B] Get:205 http://ftpmaster.internal/ubuntu disco/main armhf libxfixes3 armhf 1:5.0.3-1 [9390 B] Get:206 http://ftpmaster.internal/ubuntu disco/universe armhf libva-x11-2 armhf 2.3.0-2 [9416 B] Get:207 http://ftpmaster.internal/ubuntu disco/main armhf libvdpau1 armhf 1.1.1-8ubuntu1 [23.7 kB] Get:208 http://ftpmaster.internal/ubuntu disco/universe armhf libavutil56 armhf 7:4.1-1 [201 kB] Get:209 http://ftpmaster.internal/ubuntu disco/main armhf libpixman-1-0 armhf 0.36.0-1 [157 kB] Get:210 http://ftpmaster.internal/ubuntu disco/main armhf libcairo2 armhf 1.16.0-1 [511 kB] Get:211 http://ftpmaster.internal/ubuntu disco/universe armhf libcodec2-0.8.1 armhf 0.8.1-2 [216 kB] Get:212 http://ftpmaster.internal/ubuntu disco/universe armhf libgsm1 armhf 1.0.18-1 [23.3 kB] Get:213 http://ftpmaster.internal/ubuntu disco/main armhf libmp3lame0 armhf 3.100-2build1 [120 kB] Get:214 http://ftpmaster.internal/ubuntu disco/universe armhf libopenjp2-7 armhf 2.3.0-1.1 [126 kB] Get:215 http://ftpmaster.internal/ubuntu disco/main armhf libopus0 armhf 1.3-1 [173 kB] Get:216 http://ftpmaster.internal/ubuntu disco/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:217 http://ftpmaster.internal/ubuntu disco/main armhf libtiff5 armhf 4.0.10-3 [139 kB] Get:218 http://ftpmaster.internal/ubuntu disco/main armhf libgdk-pixbuf2.0-common all 2.38.0+dfsg-7 [6080 B] Get:219 http://ftpmaster.internal/ubuntu disco/main armhf libgdk-pixbuf2.0-0 armhf 2.38.0+dfsg-7 [153 kB] Get:220 http://ftpmaster.internal/ubuntu disco/main armhf libthai-data all 0.1.28-1 [134 kB] Get:221 http://ftpmaster.internal/ubuntu disco/main armhf libdatrie1 armhf 0.2.12-1 [15.0 kB] Get:222 http://ftpmaster.internal/ubuntu disco/main armhf libthai0 armhf 0.1.28-1 [14.7 kB] Get:223 http://ftpmaster.internal/ubuntu disco/main armhf libpango-1.0-0 armhf 1.42.4-6 [138 kB] Get:224 http://ftpmaster.internal/ubuntu disco/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [30.0 kB] Get:225 http://ftpmaster.internal/ubuntu disco/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [19.5 kB] Get:226 http://ftpmaster.internal/ubuntu disco/main armhf librsvg2-2 armhf 2.44.10-1 [920 kB] Get:227 http://ftpmaster.internal/ubuntu disco/universe armhf libshine3 armhf 3.1.1-2 [21.6 kB] Get:228 http://ftpmaster.internal/ubuntu disco/main armhf libsnappy1v5 armhf 1.1.7-1 [14.3 kB] Get:229 http://ftpmaster.internal/ubuntu disco/main armhf libspeex1 armhf 1.2~rc1.2-1ubuntu2 [43.7 kB] Get:230 http://ftpmaster.internal/ubuntu disco/main armhf libsoxr0 armhf 0.1.2-3 [51.1 kB] Get:231 http://ftpmaster.internal/ubuntu disco/universe armhf libswresample3 armhf 7:4.1-1 [50.9 kB] Get:232 http://ftpmaster.internal/ubuntu disco/main armhf libtheora0 armhf 1.1.1+dfsg.1-14 [146 kB] Get:233 http://ftpmaster.internal/ubuntu disco/main armhf libtwolame0 armhf 0.3.13-4 [42.4 kB] Get:234 http://ftpmaster.internal/ubuntu disco/main armhf libvorbis0a armhf 1.3.6-1 [75.7 kB] Get:235 http://ftpmaster.internal/ubuntu disco/main armhf libvorbisenc2 armhf 1.3.6-1 [64.4 kB] Get:236 http://ftpmaster.internal/ubuntu disco/main armhf libvpx5 armhf 1.7.0-3 [449 kB] Get:237 http://ftpmaster.internal/ubuntu disco/main armhf libwavpack1 armhf 5.1.0-5 [65.3 kB] Get:238 http://ftpmaster.internal/ubuntu disco/main armhf libwebpmux3 armhf 0.6.1-2 [16.0 kB] Get:239 http://ftpmaster.internal/ubuntu disco/universe armhf libx264-155 armhf 2:0.155.2917+git0a84d98-2 [438 kB] Get:240 http://ftpmaster.internal/ubuntu disco/universe armhf libx265-165 armhf 2.9-3 [526 kB] Get:241 http://ftpmaster.internal/ubuntu disco/universe armhf libxvidcore4 armhf 2:1.3.5-1 [163 kB] Get:242 http://ftpmaster.internal/ubuntu disco/universe armhf libzvbi-common all 0.2.35-15 [32.4 kB] Get:243 http://ftpmaster.internal/ubuntu disco/universe armhf libzvbi0 armhf 0.2.35-15 [208 kB] Get:244 http://ftpmaster.internal/ubuntu disco/universe armhf libavcodec58 armhf 7:4.1-1 [4479 kB] Get:245 http://ftpmaster.internal/ubuntu disco/universe armhf libavutil-dev armhf 7:4.1-1 [317 kB] Get:246 http://ftpmaster.internal/ubuntu disco/universe armhf libswresample-dev armhf 7:4.1-1 [59.6 kB] Get:247 http://ftpmaster.internal/ubuntu disco/universe armhf libavcodec-dev armhf 7:4.1-1 [5003 kB] Get:248 http://ftpmaster.internal/ubuntu disco/universe armhf libbluray2 armhf 1:1.0.2-3 [128 kB] Get:249 http://ftpmaster.internal/ubuntu disco/universe armhf libchromaprint1 armhf 1.4.3-3 [33.4 kB] Get:250 http://ftpmaster.internal/ubuntu disco/universe armhf libgme0 armhf 0.6.2-1 [106 kB] Get:251 http://ftpmaster.internal/ubuntu disco/main armhf libmpg123-0 armhf 1.25.10-2 [110 kB] Get:252 http://ftpmaster.internal/ubuntu disco/main armhf libvorbisfile3 armhf 1.3.6-1 [15.2 kB] Get:253 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpt0 armhf 0.4.1-1 [529 kB] Get:254 http://ftpmaster.internal/ubuntu disco/main armhf libssh-gcrypt-4 armhf 0.8.6-1 [165 kB] Get:255 http://ftpmaster.internal/ubuntu disco/universe armhf libavformat58 armhf 7:4.1-1 [895 kB] Get:256 http://ftpmaster.internal/ubuntu disco/universe armhf libavformat-dev armhf 7:4.1-1 [1131 kB] Get:257 http://ftpmaster.internal/ubuntu disco/main armhf libboost1.67-dev armhf 1.67.0-11 [8362 kB] Get:258 http://ftpmaster.internal/ubuntu disco/main armhf libboost-dev armhf 1.67.0.1 [3228 B] Get:259 http://ftpmaster.internal/ubuntu disco/universe armhf libcharls1 armhf 1.1.0+dfsg-3 [46.7 kB] Get:260 http://ftpmaster.internal/ubuntu disco/universe armhf libcharls-dev armhf 1.1.0+dfsg-3 [20.5 kB] Get:261 http://ftpmaster.internal/ubuntu disco/main armhf libcurl3-gnutls armhf 7.61.0-1ubuntu2.2 [183 kB] Get:262 http://ftpmaster.internal/ubuntu disco/main armhf libcurl4-gnutls-dev armhf 7.61.0-1ubuntu2.2 [271 kB] Get:263 http://ftpmaster.internal/ubuntu disco/universe armhf libdap25 armhf 3.20.2-1 [372 kB] Get:264 http://ftpmaster.internal/ubuntu disco/universe armhf libdapserver7v5 armhf 3.20.2-1 [18.8 kB] Get:265 http://ftpmaster.internal/ubuntu disco/universe armhf libdapclient6v5 armhf 3.20.2-1 [79.4 kB] Get:266 http://ftpmaster.internal/ubuntu disco/main armhf libicu-dev armhf 63.1-5 [8928 kB] Get:267 http://ftpmaster.internal/ubuntu disco/main armhf libxml2-dev armhf 2.9.4+dfsg1-7ubuntu3 [654 kB] Get:268 http://ftpmaster.internal/ubuntu disco/main armhf uuid-dev armhf 2.32-0.1ubuntu2 [32.7 kB] Get:269 http://ftpmaster.internal/ubuntu disco/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:270 http://ftpmaster.internal/ubuntu disco/universe armhf libdap-dev armhf 3.20.2-1 [708 kB] Get:271 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-amdgpu1 armhf 2.4.95-1 [15.8 kB] Get:272 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-radeon1 armhf 2.4.95-1 [19.0 kB] Get:273 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-nouveau2 armhf 2.4.95-1 [14.5 kB] Get:274 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-omap1 armhf 2.4.95-1 [6320 B] Get:275 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-freedreno1 armhf 2.4.95-1 [16.7 kB] Get:276 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-exynos1 armhf 2.4.95-1 [9320 B] Get:277 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-tegra0 armhf 2.4.95-1 [5688 B] Get:278 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-etnaviv1 armhf 2.4.95-1 [10.0 kB] Get:279 http://ftpmaster.internal/ubuntu disco/main armhf libdrm-dev armhf 2.4.95-1 [129 kB] Get:280 http://ftpmaster.internal/ubuntu disco/universe armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.0 kB] Get:281 http://ftpmaster.internal/ubuntu disco/main armhf libevent-2.1-6 armhf 2.1.8-stable-4build1 [115 kB] Get:282 http://ftpmaster.internal/ubuntu disco/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4build1 [75.0 kB] Get:283 http://ftpmaster.internal/ubuntu disco/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4build1 [4904 B] Get:284 http://ftpmaster.internal/ubuntu disco/main armhf libexpat1-dev armhf 2.2.6-1 [107 kB] Get:285 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-double3 armhf 3.3.8-2 [426 kB] Get:286 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-single3 armhf 3.3.8-2 [709 kB] Get:287 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-bin armhf 3.3.8-2 [24.7 kB] Get:288 http://ftpmaster.internal/ubuntu disco/main armhf libfftw3-dev armhf 3.3.8-2 [1122 kB] Get:289 http://ftpmaster.internal/ubuntu disco/main armhf libpng-dev armhf 1.6.34-2 [163 kB] Get:290 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6-dev armhf 2.8.1-2ubuntu2 [2488 kB] Get:291 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1-dev armhf 2.13.0-5ubuntu3 [693 kB] Get:292 http://ftpmaster.internal/ubuntu disco/universe armhf libfyba0 armhf 4.1.1-6 [99.1 kB] Get:293 http://ftpmaster.internal/ubuntu disco/universe armhf libfyba-dev armhf 4.1.1-6 [159 kB] Get:294 http://ftpmaster.internal/ubuntu disco/universe armhf libfreexl1 armhf 1.0.5-3 [31.2 kB] Get:295 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-3.7.1 armhf 3.7.1-1 [400 kB] Get:296 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-c1v5 armhf 3.7.1-1 [49.4 kB] Get:297 http://ftpmaster.internal/ubuntu disco/universe armhf proj-data all 5.1.0-2 [6952 kB] Get:298 http://ftpmaster.internal/ubuntu disco/universe armhf libproj13 armhf 5.1.0-2 [156 kB] Get:299 http://ftpmaster.internal/ubuntu disco/universe armhf libgeotiff2 armhf 1.4.3-1 [46.7 kB] Get:300 http://ftpmaster.internal/ubuntu disco/main armhf libgif7 armhf 5.1.4-3 [28.3 kB] Get:301 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf4-0-alt armhf 4.2.13-4 [230 kB] Get:302 http://ftpmaster.internal/ubuntu disco/universe armhf libminizip1 armhf 1.1-8build1 [18.5 kB] Get:303 http://ftpmaster.internal/ubuntu disco/universe armhf liburiparser1 armhf 0.9.0-1 [32.0 kB] Get:304 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlbase1 armhf 1.3.0-7 [38.3 kB] Get:305 http://ftpmaster.internal/ubuntu disco/universe armhf libkmldom1 armhf 1.3.0-7 [147 kB] Get:306 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlengine1 armhf 1.3.0-7 [61.7 kB] Get:307 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf13 armhf 1:4.6.2-1 [310 kB] Get:308 http://ftpmaster.internal/ubuntu disco/main armhf libltdl7 armhf 2.4.6-6 [35.7 kB] Get:309 http://ftpmaster.internal/ubuntu disco/main armhf libodbc1 armhf 2.3.6-0.1 [156 kB] Get:310 http://ftpmaster.internal/ubuntu disco/universe armhf libogdi3.2 armhf 3.2.1+ds-4 [184 kB] Get:311 http://ftpmaster.internal/ubuntu disco/main armhf liblcms2-2 armhf 2.9-3 [113 kB] Get:312 http://ftpmaster.internal/ubuntu disco/main armhf libnspr4 armhf 2:4.20-1ubuntu1 [84.6 kB] Get:313 http://ftpmaster.internal/ubuntu disco/main armhf libnss3 armhf 2:3.39-1ubuntu1 [953 kB] Get:314 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler82 armhf 0.71.0-1ubuntu1 [759 kB] Get:315 http://ftpmaster.internal/ubuntu disco/main armhf libpq5 armhf 11.1-1build1 [148 kB] Get:316 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull7 armhf 2015.2-4 [134 kB] Get:317 http://ftpmaster.internal/ubuntu disco/universe armhf libspatialite7 armhf 4.3.0a-5build2 [1298 kB] Get:318 http://ftpmaster.internal/ubuntu disco/universe armhf libxerces-c3.2 armhf 3.2.2+debian-1build1 [720 kB] Get:319 http://ftpmaster.internal/ubuntu disco/main armhf odbcinst armhf 2.3.6-0.1 [14.1 kB] Get:320 http://ftpmaster.internal/ubuntu disco/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [33.8 kB] Get:321 http://ftpmaster.internal/ubuntu disco/universe armhf libgdal20 armhf 2.3.2+dfsg-4 [4774 kB] Get:322 http://ftpmaster.internal/ubuntu disco/universe armhf libgeos-dev armhf 3.7.1-1 [73.9 kB] Get:323 http://ftpmaster.internal/ubuntu disco/main armhf libgif-dev armhf 5.1.4-3 [18.1 kB] Get:324 http://ftpmaster.internal/ubuntu disco/main armhf libllvm7 armhf 1:7.0.1-4 [11.2 MB] Get:325 http://ftpmaster.internal/ubuntu disco/main armhf libsensors-config all 1:3.5.0-3 [6264 B] Get:326 http://ftpmaster.internal/ubuntu disco/main armhf libsensors5 armhf 1:3.5.0-3 [24.3 kB] Get:327 http://ftpmaster.internal/ubuntu disco/main armhf libgl1-mesa-dri armhf 18.2.8-2ubuntu1 [3992 kB] Get:328 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-glx0 armhf 1.13.1-2 [20.2 kB] Get:329 http://ftpmaster.internal/ubuntu disco/main armhf libxdamage1 armhf 1:1.1.4-3 [6488 B] Get:330 http://ftpmaster.internal/ubuntu disco/main armhf libglx-mesa0 armhf 18.2.8-2ubuntu1 [120 kB] Get:331 http://ftpmaster.internal/ubuntu disco/main armhf libglx0 armhf 1.1.0-1 [23.7 kB] Get:332 http://ftpmaster.internal/ubuntu disco/main armhf libgl1 armhf 1.1.0-1 [98.1 kB] Get:333 http://ftpmaster.internal/ubuntu disco/universe armhf libgl2ps1.4 armhf 1.4.0+dfsg1-2 [33.6 kB] Get:334 http://ftpmaster.internal/ubuntu disco/universe armhf libgl2ps-dev armhf 1.4.0+dfsg1-2 [12.9 kB] Get:335 http://ftpmaster.internal/ubuntu disco/main armhf libgles1 armhf 1.1.0-1 [11.5 kB] Get:336 http://ftpmaster.internal/ubuntu disco/main armhf libglu1-mesa armhf 9.0.0-2.1build1 [134 kB] Get:337 http://ftpmaster.internal/ubuntu disco/main armhf xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:338 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-dev all 2018.4-4 [251 kB] Get:339 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-core-dev all 2018.4-4 [2620 B] Get:340 http://ftpmaster.internal/ubuntu disco/main armhf libxau-dev armhf 1:1.0.8-1 [9438 B] Get:341 http://ftpmaster.internal/ubuntu disco/main armhf libxdmcp-dev armhf 1:1.1.2-3 [23.6 kB] Get:342 http://ftpmaster.internal/ubuntu disco/main armhf xtrans-dev all 1.3.5-1 [70.5 kB] Get:343 http://ftpmaster.internal/ubuntu disco/main armhf libpthread-stubs0-dev armhf 0.3-4 [4084 B] Get:344 http://ftpmaster.internal/ubuntu disco/main armhf libxcb1-dev armhf 1.13.1-2 [77.2 kB] Get:345 http://ftpmaster.internal/ubuntu disco/main armhf libx11-dev armhf 2:1.6.7-1 [588 kB] Get:346 http://ftpmaster.internal/ubuntu disco/main armhf mesa-common-dev armhf 18.2.8-2ubuntu1 [560 kB] Get:347 http://ftpmaster.internal/ubuntu disco/main armhf libglvnd-core-dev armhf 1.1.0-1 [12.6 kB] Get:348 http://ftpmaster.internal/ubuntu disco/main armhf libopengl0 armhf 1.1.0-1 [33.9 kB] Get:349 http://ftpmaster.internal/ubuntu disco/main armhf libglvnd-dev armhf 1.1.0-1 [3396 B] Get:350 http://ftpmaster.internal/ubuntu disco/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [9748 B] Get:351 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri3-dev armhf 1.13.1-2 [7384 B] Get:352 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render0-dev armhf 1.13.1-2 [18.2 kB] Get:353 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-randr0-dev armhf 1.13.1-2 [20.3 kB] Get:354 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shape0-dev armhf 1.13.1-2 [7084 B] Get:355 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [11.9 kB] Get:356 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-sync-dev armhf 1.13.1-2 [10.5 kB] Get:357 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-present-dev armhf 1.13.1-2 [7064 B] Get:358 http://ftpmaster.internal/ubuntu disco/main armhf libxshmfence-dev armhf 1.3-1 [3552 B] Get:359 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [8476 B] Get:360 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-glx0-dev armhf 1.13.1-2 [27.0 kB] Get:361 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:362 http://ftpmaster.internal/ubuntu disco/main armhf libxfixes-dev armhf 1:5.0.3-1 [9856 B] Get:363 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:364 http://ftpmaster.internal/ubuntu disco/main armhf libxdamage-dev armhf 1:1.1.4-3 [4692 B] Get:365 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-xext-dev all 2018.4-4 [2620 B] Get:366 http://ftpmaster.internal/ubuntu disco/main armhf libxext-dev armhf 2:1.3.3-1 [77.8 kB] Get:367 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:368 http://ftpmaster.internal/ubuntu disco/main armhf libxxf86vm-dev armhf 1:1.1.4-1 [12.7 kB] Get:369 http://ftpmaster.internal/ubuntu disco/main armhf libgl1-mesa-dev armhf 18.2.8-2ubuntu1 [6036 B] Get:370 http://ftpmaster.internal/ubuntu disco/main armhf libglu1-mesa-dev armhf 9.0.0-2.1build1 [170 kB] Get:371 http://ftpmaster.internal/ubuntu disco/main armhf libice-dev armhf 2:1.0.9-2 [40.4 kB] Get:372 http://ftpmaster.internal/ubuntu disco/main armhf libjs-jquery all 3.2.1-1 [152 kB] Get:373 http://ftpmaster.internal/ubuntu disco/main armhf libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:374 http://ftpmaster.internal/ubuntu disco/main armhf libjs-sphinxdoc all 1.7.9-1 [92.3 kB] Get:375 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlconvenience1 armhf 1.3.0-7 [38.8 kB] Get:376 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlregionator1 armhf 1.3.0-7 [16.8 kB] Get:377 http://ftpmaster.internal/ubuntu disco/universe armhf libkmlxsd1 armhf 1.3.0-7 [24.8 kB] Get:378 http://ftpmaster.internal/ubuntu disco/main armhf libltdl-dev armhf 2.4.6-6 [160 kB] Get:379 http://ftpmaster.internal/ubuntu disco/universe armhf libminizip-dev armhf 1.1-8build1 [25.7 kB] Get:380 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-c++4 armhf 4.2-11 [27.4 kB] Get:381 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-dev armhf 1:4.6.2-1 [38.8 kB] Get:382 http://ftpmaster.internal/ubuntu disco/universe armhf libnetcdf-cxx-legacy-dev armhf 4.2-11 [50.0 kB] Get:383 http://ftpmaster.internal/ubuntu disco/main armhf libnl-3-dev armhf 3.4.0-1 [87.1 kB] Get:384 http://ftpmaster.internal/ubuntu disco/main armhf libnl-route-3-dev armhf 3.4.0-1 [150 kB] Get:385 http://ftpmaster.internal/ubuntu disco/main armhf libogg-dev armhf 1.3.2-1 [155 kB] Get:386 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc5 armhf 1.11.11-2 [83.5 kB] Get:387 http://ftpmaster.internal/ubuntu disco/main armhf libpciaccess0 armhf 0.14-1 [15.5 kB] Get:388 http://ftpmaster.internal/ubuntu disco/main armhf ocl-icd-libopencl1 armhf 2.2.11-1ubuntu1 [28.7 kB] Get:389 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc-plugins armhf 1.11.11-2 [11.2 kB] Get:390 http://ftpmaster.internal/ubuntu disco/universe armhf libpmix2 armhf 3.1.0~rc2-3 [373 kB] Get:391 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpi3 armhf 3.1.3-4 [1851 kB] Get:392 http://ftpmaster.internal/ubuntu disco/main armhf libpcre16-3 armhf 2:8.39-11 [128 kB] Get:393 http://ftpmaster.internal/ubuntu disco/main armhf libpcre32-3 armhf 2:8.39-11 [120 kB] Get:394 http://ftpmaster.internal/ubuntu disco/main armhf libpcrecpp0v5 armhf 2:8.39-11 [13.2 kB] Get:395 http://ftpmaster.internal/ubuntu disco/main armhf libpcre3-dev armhf 2:8.39-11 [474 kB] Get:396 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler-dev armhf 0.71.0-1ubuntu1 [5108 B] Get:397 http://ftpmaster.internal/ubuntu disco/main armhf libpoppler-private-dev armhf 0.71.0-1ubuntu1 [171 kB] Get:398 http://ftpmaster.internal/ubuntu disco/main armhf libpq-dev armhf 11.1-1build1 [144 kB] Get:399 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7 armhf 2.7.15-5 [891 kB] Get:400 http://ftpmaster.internal/ubuntu disco/main armhf libpython2.7-dev armhf 2.7.15-5 [30.9 MB] Get:401 http://ftpmaster.internal/ubuntu disco/main armhf libpython2-dev armhf 2.7.15-3 [7788 B] Get:402 http://ftpmaster.internal/ubuntu disco/main armhf libpython-dev armhf 2.7.15-3 [5888 B] Get:403 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull-r7 armhf 2015.2-4 [132 kB] Get:404 http://ftpmaster.internal/ubuntu disco/universe armhf libqhull-dev armhf 2015.2-4 [332 kB] Get:405 http://ftpmaster.internal/ubuntu disco/universe armhf libqt5opengl5 armhf 5.11.3+dfsg-2ubuntu1 [110 kB] Get:406 http://ftpmaster.internal/ubuntu disco/main armhf libsm-dev armhf 2:1.2.2-1 [14.8 kB] Get:407 http://ftpmaster.internal/ubuntu disco/main armhf libsodium23 armhf 1.0.16-2build1 [125 kB] Get:408 http://ftpmaster.internal/ubuntu disco/main armhf libsqlite3-dev armhf 3.26.0-3 [608 kB] Get:409 http://ftpmaster.internal/ubuntu disco/universe armhf libswscale5 armhf 7:4.1-1 [129 kB] Get:410 http://ftpmaster.internal/ubuntu disco/universe armhf libswscale-dev armhf 7:4.1-1 [144 kB] Get:411 http://ftpmaster.internal/ubuntu disco/universe armhf libsymspg1 armhf 1.11.1-1 [57.4 kB] Get:412 http://ftpmaster.internal/ubuntu disco/universe armhf libsymspg-dev armhf 1.11.1-1 [64.3 kB] Get:413 http://ftpmaster.internal/ubuntu disco/main armhf libtcl8.6 armhf 8.6.9+dfsg-1 [790 kB] Get:414 http://ftpmaster.internal/ubuntu disco/main armhf libtheora-dev armhf 1.1.1+dfsg.1-14 [162 kB] Get:415 http://ftpmaster.internal/ubuntu disco/main armhf libjbig-dev armhf 2.1-3.1build1 [22.9 kB] Get:416 http://ftpmaster.internal/ubuntu disco/main armhf liblzma-dev armhf 5.2.2-1.3 [138 kB] Get:417 http://ftpmaster.internal/ubuntu disco/main armhf libtiffxx5 armhf 4.0.10-3 [5732 B] Get:418 http://ftpmaster.internal/ubuntu disco/main armhf libtiff-dev armhf 4.0.10-3 [261 kB] Get:419 http://ftpmaster.internal/ubuntu disco/main armhf libxft2 armhf 2.3.2-2 [31.6 kB] Get:420 http://ftpmaster.internal/ubuntu disco/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:421 http://ftpmaster.internal/ubuntu disco/main armhf libtk8.6 armhf 8.6.9-1 [619 kB] Get:422 http://ftpmaster.internal/ubuntu disco/universe armhf liburiparser-dev armhf 0.9.0-1 [11.8 kB] Get:423 http://ftpmaster.internal/ubuntu disco/universe armhf libvoro++1 armhf 0.4.6+dfsg1-3 [89.7 kB] Get:424 http://ftpmaster.internal/ubuntu disco/universe armhf libeigen3-dev all 3.3.7-1 [814 kB] Get:425 http://ftpmaster.internal/ubuntu disco/universe armhf libepsilon-dev armhf 0.9.2+dfsg-4 [44.9 kB] Get:426 http://ftpmaster.internal/ubuntu disco/universe armhf libfreexl-dev armhf 1.0.5-3 [29.2 kB] Get:427 http://ftpmaster.internal/ubuntu disco/universe armhf libgeotiff-dev armhf 1.4.3-1 [73.2 kB] Get:428 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf4-alt-dev armhf 4.2.13-4 [333 kB] Get:429 http://ftpmaster.internal/ubuntu disco/main armhf libjson-c-dev armhf 0.12.1-1.3 [29.1 kB] Get:430 http://ftpmaster.internal/ubuntu disco/universe armhf libkml-dev armhf 1.3.0-7 [933 kB] Get:431 http://ftpmaster.internal/ubuntu disco/universe armhf libproj-dev armhf 5.1.0-2 [196 kB] Get:432 http://ftpmaster.internal/ubuntu disco/universe armhf libogdi3.2-dev armhf 3.2.1+ds-4 [23.7 kB] Get:433 http://ftpmaster.internal/ubuntu disco/universe armhf libopenjp2-7-dev armhf 2.3.0-1.1 [26.6 kB] Get:434 http://ftpmaster.internal/ubuntu disco/universe armhf libspatialite-dev armhf 4.3.0a-5build2 [1524 kB] Get:435 http://ftpmaster.internal/ubuntu disco/main armhf libwebpdemux2 armhf 0.6.1-2 [8760 B] Get:436 http://ftpmaster.internal/ubuntu disco/main armhf libwebp-dev armhf 0.6.1-2 [228 kB] Get:437 http://ftpmaster.internal/ubuntu disco/universe armhf libxerces-c-dev armhf 3.2.2+debian-1build1 [1525 kB] Get:438 http://ftpmaster.internal/ubuntu disco/main armhf libzstd-dev armhf 1.3.8+dfsg-3 [243 kB] Get:439 http://ftpmaster.internal/ubuntu disco/main armhf unixodbc-dev armhf 2.3.6-0.1 [202 kB] Get:440 http://ftpmaster.internal/ubuntu disco/universe armhf libgdal-dev armhf 2.3.2+dfsg-4 [6694 kB] Get:441 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-openmpi-100 armhf 1.10.0-patch1+docs-4build2 [1242 kB] Get:442 http://ftpmaster.internal/ubuntu disco/universe armhf openmpi-common all 3.1.3-4 [147 kB] Get:443 http://ftpmaster.internal/ubuntu disco/main armhf libibverbs-dev armhf 21.0-1 [147 kB] Get:444 http://ftpmaster.internal/ubuntu disco/universe armhf libhwloc-dev armhf 1.11.11-2 [148 kB] Get:445 http://ftpmaster.internal/ubuntu disco/universe armhf openmpi-bin armhf 3.1.3-4 [85.6 kB] Get:446 http://ftpmaster.internal/ubuntu disco/universe armhf libopenmpi-dev armhf 3.1.3-4 [850 kB] Get:447 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-openmpi-dev armhf 1.10.0-patch1+docs-4build2 [2365 kB] Get:448 http://ftpmaster.internal/ubuntu disco/universe armhf mpi-default-dev armhf 1.13 [3748 B] Get:449 http://ftpmaster.internal/ubuntu disco/universe armhf libhdf5-mpi-dev armhf 1.10.0-patch1+docs-4build2 [3172 B] Get:450 http://ftpmaster.internal/ubuntu disco/main armhf libjsoncpp-dev armhf 1.7.4-3 [77.5 kB] Get:451 http://ftpmaster.internal/ubuntu disco/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:452 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6.3 armhf 6.3.0+dfsg2-2build4 [28.4 MB] Get:453 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6.3-qt armhf 6.3.0+dfsg2-2build4 [218 kB] Get:454 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-jni armhf 6.3.0+dfsg2-2build4 [3892 kB] Get:455 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-java armhf 6.3.0+dfsg2-2build4 [3300 kB] Get:456 http://ftpmaster.internal/ubuntu disco/main armhf libxrender-dev armhf 1:0.9.10-1 [21.7 kB] Get:457 http://ftpmaster.internal/ubuntu disco/main armhf libxft-dev armhf 2.3.2-2 [42.3 kB] Get:458 http://ftpmaster.internal/ubuntu disco/main armhf x11proto-scrnsaver-dev all 2018.4-4 [2628 B] Get:459 http://ftpmaster.internal/ubuntu disco/main armhf libxss-dev armhf 1:1.2.3-1 [11.5 kB] Get:460 http://ftpmaster.internal/ubuntu disco/main armhf libxt-dev armhf 1:1.1.5-1 [366 kB] Get:461 http://ftpmaster.internal/ubuntu disco/universe armhf python-cbor armhf 1.0.0-1build2 [19.6 kB] Get:462 http://ftpmaster.internal/ubuntu disco/main armhf python-concurrent.futures all 3.2.0-2 [34.6 kB] Get:463 http://ftpmaster.internal/ubuntu disco/main armhf python-configparser all 3.5.0b2-1 [59.3 kB] Get:464 http://ftpmaster.internal/ubuntu disco/universe armhf python-future all 0.15.2-5 [335 kB] Get:465 http://ftpmaster.internal/ubuntu disco/universe armhf python-lz4 armhf 1.1.0+dfsg-1build1 [23.5 kB] Get:466 http://ftpmaster.internal/ubuntu disco/main armhf python-cffi-backend armhf 1.11.5-3ubuntu2 [55.8 kB] Get:467 http://ftpmaster.internal/ubuntu disco/main armhf python-six all 1.11.0-2 [11.3 kB] Get:468 http://ftpmaster.internal/ubuntu disco/universe armhf python-nacl armhf 1.3.0-2 [42.8 kB] Get:469 http://ftpmaster.internal/ubuntu disco/main armhf python-asn1crypto all 0.24.0-1 [72.7 kB] Get:470 http://ftpmaster.internal/ubuntu disco/main armhf python-enum34 all 1.1.6-2 [34.8 kB] Get:471 http://ftpmaster.internal/ubuntu disco/main armhf python-idna all 2.6-1 [32.4 kB] Get:472 http://ftpmaster.internal/ubuntu disco/main armhf python-ipaddress all 1.0.17-1 [18.2 kB] Get:473 http://ftpmaster.internal/ubuntu disco/main armhf python-cryptography armhf 2.3-1ubuntu2 [171 kB] Get:474 http://ftpmaster.internal/ubuntu disco/main armhf python-openssl all 18.0.0-1 [42.9 kB] Get:475 http://ftpmaster.internal/ubuntu disco/main armhf python-pil armhf 5.3.0-1 [308 kB] Get:476 http://ftpmaster.internal/ubuntu disco/universe armhf python-qrcode all 6.0-1 [28.0 kB] Get:477 http://ftpmaster.internal/ubuntu disco/main armhf python-attr all 18.2.0-1 [29.6 kB] Get:478 http://ftpmaster.internal/ubuntu disco/main armhf python-pyasn1 all 0.4.2-3 [46.7 kB] Get:479 http://ftpmaster.internal/ubuntu disco/main armhf python-pyasn1-modules all 0.2.1-0.2 [32.8 kB] Get:480 http://ftpmaster.internal/ubuntu disco/main armhf python-service-identity all 16.0.0-2 [9318 B] Get:481 http://ftpmaster.internal/ubuntu disco/universe armhf python-snappy armhf 0.5.3-1build1 [16.1 kB] Get:482 http://ftpmaster.internal/ubuntu disco/universe armhf python-trie all 0.2+ds-1 [7076 B] Get:483 http://ftpmaster.internal/ubuntu disco/universe armhf python-trollius all 2.1~b1-5 [83.9 kB] Get:484 http://ftpmaster.internal/ubuntu disco/main armhf python-twisted-bin armhf 18.9.0-3 [13.2 kB] Get:485 http://ftpmaster.internal/ubuntu disco/main armhf python-pkg-resources all 40.6.2-1 [129 kB] Get:486 http://ftpmaster.internal/ubuntu disco/main armhf python-zope.interface armhf 4.3.2-1build4 [80.5 kB] Get:487 http://ftpmaster.internal/ubuntu disco/main armhf python-automat all 0.6.0-1 [25.1 kB] Get:488 http://ftpmaster.internal/ubuntu disco/main armhf python-constantly all 15.1.0-1 [7960 B] Get:489 http://ftpmaster.internal/ubuntu disco/main armhf python-hyperlink all 17.3.1-2 [27.5 kB] Get:490 http://ftpmaster.internal/ubuntu disco/main armhf python-incremental all 16.10.1-3 [14.4 kB] Get:491 http://ftpmaster.internal/ubuntu disco/main armhf python-twisted-core all 18.9.0-3 [1989 kB] Get:492 http://ftpmaster.internal/ubuntu disco/universe armhf python-twisted all 18.9.0-3 [3716 B] Get:493 http://ftpmaster.internal/ubuntu disco/universe armhf python-txaio all 2.10.0-1 [18.7 kB] Get:494 http://ftpmaster.internal/ubuntu disco/universe armhf python-u-msgpack all 2.1-1 [7268 B] Get:495 http://ftpmaster.internal/ubuntu disco/universe armhf python-ubjson armhf 0.12.0-1build1 [29.5 kB] Get:496 http://ftpmaster.internal/ubuntu disco/universe armhf python-wsaccel armhf 0.6.2-1build2 [35.2 kB] Get:497 http://ftpmaster.internal/ubuntu disco/universe armhf python-autobahn all 17.10.1+dfsg1-3 [157 kB] Get:498 http://ftpmaster.internal/ubuntu disco/universe armhf mpi-default-bin armhf 1.13 [2968 B] Get:499 http://ftpmaster.internal/ubuntu disco/universe armhf python-mpi4py armhf 2.0.0-3build3 [367 kB] Get:500 http://ftpmaster.internal/ubuntu disco/universe armhf python-vtk6 armhf 6.3.0+dfsg2-2build4 [244 kB] Get:501 http://ftpmaster.internal/ubuntu disco/main armhf tcl8.6 armhf 8.6.9+dfsg-1 [14.2 kB] Get:502 http://ftpmaster.internal/ubuntu disco/main armhf tcl8.6-dev armhf 8.6.9+dfsg-1 [807 kB] Get:503 http://ftpmaster.internal/ubuntu disco/universe armhf tcl armhf 8.6.0+9 [5142 B] Get:504 http://ftpmaster.internal/ubuntu disco/universe armhf tcl-dev armhf 8.6.0+9 [5680 B] Get:505 http://ftpmaster.internal/ubuntu disco/universe armhf tcl-vtk6 armhf 6.3.0+dfsg2-2build4 [130 kB] Get:506 http://ftpmaster.internal/ubuntu disco/universe armhf tk8.6 armhf 8.6.9-1 [12.1 kB] Get:507 http://ftpmaster.internal/ubuntu disco/universe armhf tk8.6-dev armhf 8.6.9-1 [634 kB] Get:508 http://ftpmaster.internal/ubuntu disco/universe armhf tk armhf 8.6.0+9 [3178 B] Get:509 http://ftpmaster.internal/ubuntu disco/universe armhf tk-dev armhf 8.6.0+9 [2976 B] Get:510 http://ftpmaster.internal/ubuntu disco/universe armhf vtk6 armhf 6.3.0+dfsg2-2build4 [154 kB] Get:511 http://ftpmaster.internal/ubuntu disco/universe armhf libvtk6-dev armhf 6.3.0+dfsg2-2build4 [2144 kB] Get:512 http://ftpmaster.internal/ubuntu disco/universe armhf voro++-dev armhf 0.4.6+dfsg1-3 [124 kB] Get:513 http://ftpmaster.internal/ubuntu disco/main armhf opencl-c-headers all 2.2~2018.10.31-g03490c3-1 [30.3 kB] Get:514 http://ftpmaster.internal/ubuntu disco/main armhf ocl-icd-opencl-dev armhf 2.2.11-1ubuntu1 [2520 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 261 MB in 12s (22.5 MB/s) Selecting previously unselected package libxau6:armhf. (Reading database ... 13353 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../003-libxcb1_1.13.1-2_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../005-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../006-libxext6_2%3a1.3.3-1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../007-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../009-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.8.5-1_armhf.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libogg0:armhf. Preparing to unpack .../011-libogg0_1.3.2-1_armhf.deb ... Unpacking libogg0:armhf (1.3.2-1) ... Selecting previously unselected package libglvnd0:armhf. Preparing to unpack .../012-libglvnd0_1.1.0-1_armhf.deb ... Unpacking libglvnd0:armhf (1.1.0-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../013-libdrm-common_2.4.95-1_all.deb ... Unpacking libdrm-common (2.4.95-1) ... Selecting previously unselected package libdrm2:armhf. Preparing to unpack .../014-libdrm2_2.4.95-1_armhf.deb ... Unpacking libdrm2:armhf (2.4.95-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../015-libexpat1_2.2.6-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-1) ... Selecting previously unselected package libwayland-server0:armhf. Preparing to unpack .../016-libwayland-server0_1.16.0-1ubuntu2_armhf.deb ... Unpacking libwayland-server0:armhf (1.16.0-1ubuntu2) ... Selecting previously unselected package libgbm1:armhf. Preparing to unpack .../017-libgbm1_18.2.8-2ubuntu1_armhf.deb ... Unpacking libgbm1:armhf (18.2.8-2ubuntu1) ... Selecting previously unselected package libglapi-mesa:armhf. Preparing to unpack .../018-libglapi-mesa_18.2.8-2ubuntu1_armhf.deb ... Unpacking libglapi-mesa:armhf (18.2.8-2ubuntu1) ... Selecting previously unselected package libwayland-client0:armhf. Preparing to unpack .../019-libwayland-client0_1.16.0-1ubuntu2_armhf.deb ... Unpacking libwayland-client0:armhf (1.16.0-1ubuntu2) ... Selecting previously unselected package libx11-xcb1:armhf. Preparing to unpack .../020-libx11-xcb1_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.6.7-1) ... Selecting previously unselected package libxcb-dri2-0:armhf. Preparing to unpack .../021-libxcb-dri2-0_1.13.1-2_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-dri3-0:armhf. Preparing to unpack .../022-libxcb-dri3-0_1.13.1-2_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-present0:armhf. Preparing to unpack .../023-libxcb-present0_1.13.1-2_armhf.deb ... Unpacking libxcb-present0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-sync1:armhf. Preparing to unpack .../024-libxcb-sync1_1.13.1-2_armhf.deb ... Unpacking libxcb-sync1:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0:armhf. Preparing to unpack .../025-libxcb-xfixes0_1.13.1-2_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.13.1-2) ... Selecting previously unselected package libxshmfence1:armhf. Preparing to unpack .../026-libxshmfence1_1.3-1_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1) ... Selecting previously unselected package libegl-mesa0:armhf. Preparing to unpack .../027-libegl-mesa0_18.2.8-2ubuntu1_armhf.deb ... Unpacking libegl-mesa0:armhf (18.2.8-2ubuntu1) ... Selecting previously unselected package libegl1:armhf. Preparing to unpack .../028-libegl1_1.1.0-1_armhf.deb ... Unpacking libegl1:armhf (1.1.0-1) ... Selecting previously unselected package libgles2:armhf. 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Selecting previously unselected package libxcb-xkb1:armhf. Preparing to unpack .../074-libxcb-xkb1_1.13.1-2_armhf.deb ... Unpacking libxcb-xkb1:armhf (1.13.1-2) ... Selecting previously unselected package libxi6:armhf. Preparing to unpack .../075-libxi6_2%3a1.7.9-1_armhf.deb ... Unpacking libxi6:armhf (2:1.7.9-1) ... Selecting previously unselected package xkb-data. Preparing to unpack .../076-xkb-data_2.23.1-1ubuntu1.18.10.1_all.deb ... Unpacking xkb-data (2.23.1-1ubuntu1.18.10.1) ... Selecting previously unselected package libxkbcommon0:armhf. Preparing to unpack .../077-libxkbcommon0_0.8.2-1_armhf.deb ... Unpacking libxkbcommon0:armhf (0.8.2-1) ... Selecting previously unselected package libxkbcommon-x11-0:armhf. Preparing to unpack .../078-libxkbcommon-x11-0_0.8.2-1_armhf.deb ... Unpacking libxkbcommon-x11-0:armhf (0.8.2-1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../079-libxrender1_1%3a0.9.10-1_armhf.deb ... 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Setting up libmysqlclient20:armhf (5.7.24-2) ... Setting up icu-devtools (63.1-5) ... Setting up liborc-0.4-0:armhf (1:0.4.28-3.1) ... Setting up libpcre16-3:armhf (2:8.39-11) ... Setting up libaom0:armhf (1.0.0-3) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libgme0:armhf (0.6.2-1) ... Setting up libtcl8.6:armhf (8.6.9+dfsg-1) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:armhf (5.2.2-1.3) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up ocl-icd-libopencl1:armhf (2.2.11-1ubuntu1) ... Setting up libzvbi0:armhf (0.2.35-15) ... Setting up libkeyutils1:armhf (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:armhf (3.4.0-1) ... Setting up libvorbis0a:armhf (1.3.6-1) ... Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmpg123-0:armhf (1.25.10-2) ... Setting up libfyba-dev:armhf (4.1.1-6) ... Setting up libogg-dev:armhf (1.3.2-1) ... Setting up libgfortran5:armhf (9-20190109-0ubuntu1) ... Setting up libglvnd-core-dev:armhf (1.1.0-1) ... Setting up libpcre2-16-0:armhf (10.32-3) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4build2) ... Setting up libqhull-r7:armhf (2015.2-4) ... Setting up libgsm1:armhf (1.0.18-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libpython2.7-stdlib:armhf (2.7.15-5) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libdbus-1-3:armhf (1.12.10-1ubuntu2) ... Setting up liburiparser1:armhf (0.9.0-1) ... Setting up libavahi-common-data:armhf (0.7-4ubuntu4) ... Setting up libsz2:armhf (1.0.2-1) ... Setting up proj-data (5.1.0-2) ... Setting up libwayland-server0:armhf (1.16.0-1ubuntu2) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libfreexl-dev:armhf (1.0.5-3) ... Setting up libvorbisfile3:armhf (1.3.6-1) ... Setting up libjsoncpp-dev:armhf (1.7.4-3) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libqt5core5a:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libsymspg-dev (1.11.1-1) ... Setting up libk5crypto3:armhf (1.16.2-1) ... Setting up libqt5dbus5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libpcre3-dev:armhf (2:8.39-11) ... Setting up libdap25:armhf (3.20.2-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libodbc1:armhf (2.3.6-0.1) ... Setting up libgstreamer1.0-0:armhf (1.14.4-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libqt5network5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libgfortran-9-dev:armhf (9-20190109-0ubuntu1) ... Setting up libwacom2:armhf (0.31-1) ... Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4build2) ... Setting up libmysqlclient-dev (5.7.24-2) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libxshmfence-dev:armhf (1.3-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libopenmpt0:armhf (0.4.1-1) ... Setting up libarchive13:armhf (3.3.3-3) ... Setting up libllvm7:armhf (1:7.0.1-4) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up libgif-dev (5.1.4-3) ... Setting up libepsilon-dev:armhf (0.9.2+dfsg-4) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up ocl-icd-opencl-dev:armhf (2.2.11-1ubuntu1) ... Setting up liblapack3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libaec-dev:armhf (1.0.2-1) ... Setting up python2.7 (2.7.15-5) ... Setting up libnss3:armhf (2:3.39-1ubuntu1) ... Setting up libproj13:armhf (5.1.0-2) ... Setting up libharfbuzz0b:armhf (2.3.0-1) ... Setting up libtiff5:armhf (4.0.10-3) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:armhf (1:1.0.8-1) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:armhf (0.1.28-1) ... Setting up libicu-dev (63.1-5) ... Setting up file (1:5.34-2) ... Setting up libinput-bin (1.12.4-1) ... Setting up libsuperlu5:armhf (5.2.1+dfsg1-3build1) ... Setting up libhwloc5:armhf (1.11.11-2) ... Setting up libkmlbase1:armhf (1.3.0-7) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libqhull-dev:armhf (2015.2-4) ... Setting up libdrm2:armhf (2.4.95-1) ... Setting up libxml2-dev:armhf (2.9.4+dfsg1-7ubuntu3) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up libhwloc-plugins:armhf (1.11.11-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libkmlxsd1:armhf (1.3.0-7) ... Setting up libgeos-c1v5:armhf (3.7.1-1) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-3build1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libdapserver7v5:armhf (3.20.2-1) ... Setting up libqt5positioning5:armhf (5.11.3+dfsg-2) ... Setting up libwebpmux3:armhf (0.6.1-2) ... Setting up libva-drm2:armhf (2.3.0-2) ... Setting up tcl8.6 (8.6.9+dfsg-1) ... Setting up libdrm-etnaviv1:armhf (2.4.95-1) ... Setting up libpython2.7:armhf (2.7.15-5) ... Setting up libgeotiff2:armhf (1.4.3-1) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:armhf (2:1.0.9-2) ... Setting up libtiffxx5:armhf (4.0.10-3) ... Setting up libwebpdemux2:armhf (0.6.1-2) ... Setting up libspatialite7:armhf (4.3.0a-5build2) ... Setting up libarpack2:armhf (3.6.3-1) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:armhf (2.7.15-3) ... Setting up liburiparser-dev (0.9.0-1) ... Setting up libkrb5-3:armhf (1.16.2-1) ... Setting up libpython2.7-dev:armhf (2.7.15-5) ... Setting up libkmldom1:armhf (1.3.0-7) ... Setting up libavahi-common3:armhf (0.7-4ubuntu4) ... Setting up libdrm-radeon1:armhf (2.4.95-1) ... Setting up default-libmysqlclient-dev:armhf (1.0.5) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libpng-dev:armhf (1.6.34-2) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up libvorbisenc2:armhf (1.3.6-1) ... Setting up libdrm-nouveau2:armhf (2.4.95-1) ... Setting up libspatialite-dev:armhf (4.3.0a-5build2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up tcl8.6-dev:armhf (8.6.9+dfsg-1) ... Setting up gfortran-9 (9-20190109-0ubuntu1) ... Setting up libxcb-xkb1:armhf (1.13.1-2) ... Setting up libqt5qml5:armhf (5.11.3-2build1) ... Setting up liblapack-dev:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.6-6) ... Setting up libxcb-xinerama0:armhf (1.13.1-2) ... Setting up gfortran (4:9-20181126-1ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libibverbs1:armhf (21.0-1) ... Setting up libxcb-present0:armhf (1.13.1-2) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.14.4-1ubuntu1) ... Setting up libtiff-dev:armhf (4.0.10-3) ... Setting up libfontconfig1:armhf (2.13.0-5ubuntu3) ... Setting up libxcb-dri2-0:armhf (1.13.1-2) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libqt5sensors5:armhf (5.11.3-2) ... Setting up libgeotiff-dev:armhf (1.4.3-1) ... Setting up libproj-dev:armhf (5.1.0-2) ... Setting up libxcb-dri3-0:armhf (1.13.1-2) ... Setting up libxcb-glx0:armhf (1.13.1-2) ... Setting up libxcb-randr0:armhf (1.13.1-2) ... Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4build2) ... Setting up libxcb-xfixes0:armhf (1.13.1-2) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libltdl-dev:armhf (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up libdrm-amdgpu1:armhf (2.4.95-1) ... Setting up libhwloc-dev:armhf (1.11.11-2) ... Setting up libdrm-exynos1:armhf (2.4.95-1) ... Setting up libdrm-freedreno1:armhf (2.4.95-1) ... Setting up libarmadillo9 (1:9.200.6+dfsg-1) ... Setting up libdrm-omap1:armhf (2.4.95-1) ... Setting up libgbm1:armhf (18.2.8-2ubuntu1) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libinput10:armhf (1.12.4-1) ... Setting up libgl1-mesa-dri:armhf (18.2.8-2ubuntu1) ... Setting up tcl (8.6.0+9) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libpoppler82:armhf (0.71.0-1ubuntu1) ... Setting up libbluray2:armhf (1:1.0.2-3) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4build2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgeos-dev (3.7.1-1) ... Setting up libdrm-tegra0:armhf (2.4.95-1) ... Setting up libxcb-util1:armhf (0.4.0-0ubuntu3) ... Setting up libpmix2:armhf (3.1.0~rc2-3) ... Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ... Setting up python2 (2.7.15-3) ... Setting up libogdi3.2-dev (3.2.1+ds-4) ... Setting up libwebp-dev:armhf (0.6.1-2) ... Setting up libxcb-sync1:armhf (1.13.1-2) ... Setting up libgssapi-krb5-2:armhf (1.16.2-1) ... Setting up libpython2-dev:armhf (2.7.15-3) ... Setting up libpython-stdlib:armhf (2.7.15-3) ... Setting up libkmlengine1:armhf (1.3.0-7) ... Setting up libfreetype6-dev:armhf (2.8.1-2ubuntu2) ... Setting up libice-dev:armhf (2:1.0.9-2) ... Setting up ibverbs-providers:armhf (21.0-1) ... Setting up libarpack2-dev:armhf (3.6.3-1) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxcb-shape0:armhf (1.13.1-2) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libxcb-glx0-dev:armhf (1.13.1-2) ... Setting up libavahi-client3:armhf (0.7-4ubuntu4) ... Setting up libxcb-keysyms1:armhf (0.4.0-1) ... Setting up libegl-mesa0:armhf (18.2.8-2ubuntu1) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up libqt5webchannel5:armhf (5.11.3-2) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up openssh-client (1:7.9p1-4) ... Setting up libibverbs-dev:armhf (21.0-1) ... Setting up tcl-dev:armhf (8.6.0+9) ... Setting up python (2.7.15-3) ... Setting up libxcb-sync-dev:armhf (1.13.1-2) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up libcups2:armhf (2.2.10-3) ... Setting up python-u-msgpack (2.1-1) ... Setting up libarmadillo-dev (1:9.200.6+dfsg-1) ... Setting up libfontconfig1-dev:armhf (2.13.0-5ubuntu3) ... Setting up python-idna (2.6-1) ... Setting up libx11-xcb-dev:armhf (2:1.6.7-1) ... Setting up libpython-dev:armhf (2.7.15-3) ... Setting up python-hyperlink (17.3.1-2) ... Setting up libsm-dev:armhf (2:1.2.2-1) ... Setting up libxcb-render-util0:armhf (0.3.9-1) ... Setting up python-asn1crypto (0.24.0-1) ... Setting up libopenmpi3:armhf (3.1.3-4) ... Setting up libhdf5-openmpi-100:armhf (1.10.0-patch1+docs-4build2) ... Setting up libpoppler-dev:armhf (0.71.0-1ubuntu1) ... Setting up python-attr (18.2.0-1) ... Setting up libxdamage1:armhf (1:1.1.4-3) ... Setting up python-snappy (0.5.3-1build1) ... Setting up libxcb-image0:armhf (0.4.0-1build1) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up python-pyasn1 (0.4.2-3) ... Setting up libdrm-dev:armhf (2.4.95-1) ... Setting up libssh-gcrypt-4:armhf (0.8.6-1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libgdk-pixbuf2.0-0:armhf (2.38.0+dfsg-7) ... Setting up python-twisted-bin:armhf (18.9.0-3) ... Setting up libvdpau1:armhf (1.1.1-8ubuntu1) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up python-pkg-resources (40.6.2-1) ... Setting up libkmlconvenience1:armhf (1.3.0-7) ... Setting up openmpi-bin (3.1.3-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python-pyasn1-modules (0.2.1-0.2) ... Setting up cython (0.28.4-1build1) ... Setting up python-wsaccel (0.6.2-1build2) ... Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up python-configparser (3.5.0b2-1) ... Setting up libegl1:armhf (1.1.0-1) ... Setting up python-cffi-backend (1.11.5-3ubuntu2) ... Setting up libxft-dev:armhf (2.3.2-2) ... Setting up python-incremental (16.10.1-3) ... Setting up libxcb-dri3-dev:armhf (1.13.1-2) ... Setting up python-six (1.11.0-2) ... Setting up python-constantly (15.1.0-1) ... Setting up python-cbor (1.0.0-1build2) ... Setting up python-zope.interface (4.3.2-1build4) ... Setting up libldap-2.4-2:armhf (2.4.46+dfsg-5ubuntu3) ... Setting up libkmlregionator1:armhf (1.3.0-7) ... Setting up libxext-dev:armhf (2:1.3.3-1) ... Setting up libpango-1.0-0:armhf (1.42.4-6) ... Setting up python-enum34 (1.1.6-2) ... Setting up libxcb-shape0-dev:armhf (1.13.1-2) ... Setting up python-concurrent.futures (3.2.0-2) ... Setting up libxxf86vm1:armhf (1:1.1.4-1) ... Setting up libva-x11-2:armhf (2.3.0-2) ... Setting up python-ubjson (0.12.0-1build1) ... Setting up python-ipaddress (1.0.17-1) ... Setting up libxxf86vm-dev:armhf (1:1.1.4-1) ... Setting up libxfixes-dev:armhf (1:5.0.3-1) ... Setting up python-trie (0.2+ds-1) ... Setting up python-automat (0.6.0-1) ... Setting up python-pil:armhf (5.3.0-1) ... Setting up python-future (0.15.2-5) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up libglx-mesa0:armhf (18.2.8-2ubuntu1) ... Setting up mpi-default-bin (1.13) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up libcairo2:armhf (1.16.0-1) ... Setting up libxcb-randr0-dev:armhf (1.13.1-2) ... Setting up libxt-dev:armhf (1:1.1.5-1) ... Setting up libpoppler-private-dev:armhf (0.71.0-1ubuntu1) ... Setting up python-lz4 (1.1.0+dfsg-1build1) ... Setting up python-nacl (1.3.0-2) ... Setting up mesa-common-dev:armhf (18.2.8-2ubuntu1) ... Setting up python-trollius (2.1~b1-5) ... Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ... Setting up libcurl3-gnutls:armhf (7.61.0-1ubuntu2.2) ... Setting up libavutil56:armhf (7:4.1-1) ... Setting up libtk8.6:armhf (8.6.9-1) ... Setting up libopenmpi-dev:armhf (3.1.3-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libcurl4:armhf (7.61.0-1ubuntu2.2) ... Setting up libxdamage-dev:armhf (1:1.1.4-3) ... Setting up python-qrcode (6.0-1) ... update-alternatives: using /usr/bin/python2-qr to provide /usr/bin/qr (qr) in auto mode Setting up libxss-dev:armhf (1:1.2.3-1) ... Setting up mpi-default-dev (1.13) ... Setting up libkml-dev:armhf (1.3.0-7) ... Setting up libpangoft2-1.0-0:armhf (1.42.4-6) ... Setting up libhdf5-openmpi-dev (1.10.0-patch1+docs-4build2) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode Setting up libdapclient6v5:armhf (3.20.2-1) ... Setting up libpq5:armhf (11.1-1build1) ... Setting up libqt5gui5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libnetcdf13:armhf (1:4.6.2-1) ... Setting up python-cryptography (2.3-1ubuntu2) ... Setting up libxcb-present-dev:armhf (1.13.1-2) ... Setting up cmake (3.13.2-1) ... Setting up libtheora0:armhf (1.1.1+dfsg.1-14) ... Setting up libglx0:armhf (1.1.0-1) ... Setting up libcurl4-gnutls-dev:armhf (7.61.0-1ubuntu2.2) ... Setting up libnetcdf-dev (1:4.6.2-1) ... Setting up libxerces-c3.2:armhf (3.2.2+debian-1build1) ... Setting up libswscale5:armhf (7:4.1-1) ... Setting up python-mpi4py (2.0.0-3build3) ... Setting up libqt5quick5:armhf (5.11.3-2build1) ... Setting up libavutil-dev:armhf (7:4.1-1) ... Setting up libnetcdf-c++4 (4.2-11) ... Setting up libnetcdf-cxx-legacy-dev (4.2-11) ... Setting up libxerces-c-dev (3.2.2+debian-1build1) ... Setting up tk8.6 (8.6.9-1) ... Setting up libpq-dev (11.1-1build1) ... Setting up libqt5widgets5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libswresample3:armhf (7:4.1-1) ... Setting up libdap-dev:armhf (3.20.2-1) ... Setting up python-openssl (18.0.0-1) ... Setting up libtheora-dev:armhf (1.1.1+dfsg.1-14) ... Setting up tk8.6-dev:armhf (8.6.9-1) ... Setting up libpangocairo-1.0-0:armhf (1.42.4-6) ... Setting up libhdf5-mpi-dev (1.10.0-patch1+docs-4build2) ... Setting up libqt5printsupport5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libqt5opengl5:armhf (5.11.3+dfsg-2ubuntu1) ... Setting up libhdf4-alt-dev (4.2.13-4) ... Setting up libswscale-dev:armhf (7:4.1-1) ... Setting up tk (8.6.0+9) ... Setting up libswresample-dev:armhf (7:4.1-1) ... Setting up libgl1:armhf (1.1.0-1) ... Setting up libglu1-mesa:armhf (9.0.0-2.1build1) ... Setting up python-service-identity (16.0.0-2) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up librsvg2-2:armhf (2.44.10-1) ... Setting up libqt5webkit5:armhf (5.212.0~alpha2-19ubuntu1) ... Setting up tk-dev:armhf (8.6.0+9) ... Setting up libglvnd-dev:armhf (1.1.0-1) ... Setting up python-twisted-core (18.9.0-3) ... Setting up libgl1-mesa-dev:armhf (18.2.8-2ubuntu1) ... Setting up python-twisted (18.9.0-3) ... Setting up libgl2ps-dev (1.4.0+dfsg1-2) ... Setting up libavcodec58:armhf (7:4.1-1) ... Setting up libglu1-mesa-dev:armhf (9.0.0-2.1build1) ... Setting up libchromaprint1:armhf (1.4.3-3) ... Setting up python-txaio (2.10.0-1) ... Setting up libavformat58:armhf (7:4.1-1) ... Setting up libavcodec-dev:armhf (7:4.1-1) ... Setting up libavformat-dev:armhf (7:4.1-1) ... Setting up python-autobahn (17.10.1+dfsg1-3) ... Setting up dh-autoreconf (19) ... Setting up odbcinst (2.3.6-0.1) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up odbcinst1debian2:armhf (2.3.6-0.1) ... Setting up debhelper (11.5.3ubuntu1) ... Setting up unixodbc-dev:armhf (2.3.6-0.1) ... Setting up libgdal20 (2.3.2+dfsg-4) ... Setting up libvtk6.3 (6.3.0+dfsg2-2build4) ... Setting up libvtk6.3-qt (6.3.0+dfsg2-2build4) ... Setting up python-vtk6 (6.3.0+dfsg2-2build4) ... Setting up libgdal-dev (2.3.2+dfsg-4) ... Setting up vtk6 (6.3.0+dfsg2-2build4) ... Setting up libvtk6-jni (6.3.0+dfsg2-2build4) ... Setting up tcl-vtk6 (6.3.0+dfsg2-2build4) ... Setting up libvtk6-java (6.3.0+dfsg2-2build4) ... Setting up libvtk6-dev (6.3.0+dfsg2-2build4) ... Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-12ubuntu1 g++-9_9-20190109-0ubuntu1 gcc-8_8.2.0-12ubuntu1 gcc-9_9-20190109-0ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-12ubuntu1 libstdc++-9-dev_9-20190109-0ubuntu1 libstdc++6_9-20190109-0ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 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libtinfo6_6.1+20180210-4ubuntu1 libtk8.6_8.6.9-1 libtool_2.4.6-6 libtwolame0_0.3.13-4 libubsan1_9-20190109-0ubuntu1 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 liburiparser-dev_0.9.0-1 liburiparser1_0.9.0-1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libuv1_1.24.0-1 libva-drm2_2.3.0-2 libva-x11-2_2.3.0-2 libva2_2.3.0-2 libvdpau1_1.1.1-8ubuntu1 libvorbis0a_1.3.6-1 libvorbisenc2_1.3.6-1 libvorbisfile3_1.3.6-1 libvoro++1_0.4.6+dfsg1-3 libvpx5_1.7.0-3 libvtk6-dev_6.3.0+dfsg2-2build4 libvtk6-java_6.3.0+dfsg2-2build4 libvtk6-jni_6.3.0+dfsg2-2build4 libvtk6.3_6.3.0+dfsg2-2build4 libvtk6.3-qt_6.3.0+dfsg2-2build4 libwacom-common_0.31-1 libwacom2_0.31-1 libwavpack1_5.1.0-5 libwayland-client0_1.16.0-1ubuntu2 libwayland-server0_1.16.0-1ubuntu2 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2.1 libwoff1_1.0.2-1build1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libx264-155_2:0.155.2917+git0a84d98-2 libx265-165_2.9-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1build1 libxcb-keysyms1_0.4.0-1 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util1_0.4.0-0ubuntu3 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.2+debian-1build1 libxerces-c3.2_3.2.2+debian-1build1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxi6_2:1.7.9-1 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml2_2.9.4+dfsg1-7ubuntu3 libxml2-dev_2.9.4+dfsg1-7ubuntu3 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxslt1.1_1.1.32-2 libxss-dev_1:1.2.3-1 libxss1_1:1.2.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxvidcore4_2:1.3.5-1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzstd-dev_1.3.8+dfsg-3 libzstd1_1.3.8+dfsg-3 libzvbi-common_0.2.35-15 libzvbi0_0.2.35-15 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mesa-common-dev_18.2.8-2ubuntu1 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 mpi-default-bin_1.13 mpi-default-dev_1.13 multiarch-support_2.28-0ubuntu1 mysql-common_5.8+1.0.5 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 ocl-icd-opencl-dev_2.2.11-1ubuntu1 odbcinst_2.3.6-0.1 odbcinst1debian2_2.3.6-0.1 opencl-c-headers_2.2~2018.10.31-g03490c3-1 openmpi-bin_3.1.3-4 openmpi-common_3.1.3-4 openssh-client_1:7.9p1-4 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 proj-data_5.1.0-2 python_2.7.15-3 python-asn1crypto_0.24.0-1 python-attr_18.2.0-1 python-autobahn_17.10.1+dfsg1-3 python-automat_0.6.0-1 python-cbor_1.0.0-1build2 python-cffi-backend_1.11.5-3ubuntu2 python-concurrent.futures_3.2.0-2 python-configparser_3.5.0b2-1 python-constantly_15.1.0-1 python-cryptography_2.3-1ubuntu2 python-enum34_1.1.6-2 python-future_0.15.2-5 python-hyperlink_17.3.1-2 python-idna_2.6-1 python-incremental_16.10.1-3 python-ipaddress_1.0.17-1 python-lz4_1.1.0+dfsg-1build1 python-minimal_2.7.15-3 python-mpi4py_2.0.0-3build3 python-nacl_1.3.0-2 python-openssl_18.0.0-1 python-pil_5.3.0-1 python-pkg-resources_40.6.2-1 python-pyasn1_0.4.2-3 python-pyasn1-modules_0.2.1-0.2 python-qrcode_6.0-1 python-service-identity_16.0.0-2 python-six_1.11.0-2 python-snappy_0.5.3-1build1 python-trie_0.2+ds-1 python-trollius_2.1~b1-5 python-twisted_18.9.0-3 python-twisted-bin_18.9.0-3 python-twisted-core_18.9.0-3 python-txaio_2.10.0-1 python-u-msgpack_2.1-1 python-ubjson_0.12.0-1build1 python-vtk6_6.3.0+dfsg2-2build4 python-wsaccel_0.6.2-1build2 python-zope.interface_4.3.2-1build4 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tcl_8.6.0+9 tcl-dev_8.6.0+9 tcl-vtk6_6.3.0+dfsg2-2build4 tcl8.6_8.6.9+dfsg-1 tcl8.6-dev_8.6.9+dfsg-1 tk_8.6.0+9 tk-dev_8.6.0+9 tk8.6_8.6.9-1 tk8.6-dev_8.6.9-1 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unixodbc-dev_2.3.6-0.1 util-linux_2.32-0.1ubuntu2 uuid-dev_2.32-0.1ubuntu2 voro++-dev_0.4.6+dfsg1-3 vtk6_6.3.0+dfsg2-2build4 x11-common_1:7.7+19ubuntu8 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-scrnsaver-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.23.1-1ubuntu1.18.10.1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 13 18:53:21 2018 UTC gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20180822.gitb47e49223+dfsg1-2.dsc dpkg-source: info: extracting lammps in lammps-0~20180822.gitb47e49223+dfsg1 dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1.orig.tar.xz dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_enable_spglib.patch dpkg-source: info: applying 20_set_potentials_path.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15936756 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15936756 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15936756 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20180822.gitb47e49223+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_clean rm -rf /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_clean -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build debian/rules build-arch dh build-arch --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build dh_update_autotools_config -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_autoreconf -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_configure -- \ -DPKG_ASPHERE=ON \ -DPKG_BODY=ON \ -DPKG_CLASS2=ON \ -DPKG_COLLOID=ON \ -DPKG_COMPRESS=ON \ -DPKG_CORESHELL=ON \ -DPKG_DIPOLE=ON \ -DPKG_GPU=ON \ -DPKG_GRANULAR=ON \ -DPKG_KIM=OFF \ -DPKG_KSPACE=ON \ -DPKG_MANYBODY=ON \ -DPKG_MC=ON \ -DPKG_MEAM=ON \ -DPKG_MISC=ON \ -DPKG_MOLECULE=ON \ -DPKG_MPIIO=ON \ -DPKG_OPT=ON \ -DPKG_PERI=ON \ -DPKG_POEMS=ON \ -DPKG_PYTHON=ON \ -DPKG_QEQ=ON \ -DPKG_REAX=OFF \ -DPKG_REPLICA=ON \ -DPKG_RIGID=ON \ -DPKG_SHOCK=ON \ -DPKG_SNAP=ON \ -DPKG_SRD=ON \ -DPKG_USER-ATC=ON \ -DPKG_USER-AWPMD=ON \ -DPKG_USER-BOCS=ON \ -DPKG_USER-CGDNA=ON \ -DPKG_USER-CGSDK=ON \ -DPKG_USER-DIFFRACTION=ON \ -DPKG_USER-DPD=ON \ -DPKG_USER-DRUDE=ON \ -DPKG_USER-EFF=ON \ -DPKG_USER-FEP=ON \ -DPKG_USER-H5MD=ON \ -DPKG_USER-LB=ON \ -DPKG_USER-MANIFOLD=ON \ -DPKG_USER-MEAMC=ON \ -DPKG_USER-MESO=ON \ -DPKG_USER-MGPT=ON \ -DPKG_USER-MISC=ON \ -DPKG_USER-MOFFF=ON \ -DPKG_USER-MOLFILE=ON \ -DPKG_USER-NETCDF=ON \ -DPKG_USER-OMP=ON \ -DPKG_USER-PHONON=ON \ -DPKG_USER-QTB=ON \ -DPKG_USER-REAXC=OFF \ -DPKG_USER-SMD=ON \ -DPKG_USER-SMTBQ=ON \ -DPKG_USER-SPH=ON \ -DPKG_USER-TALLY=ON \ -DPKG_USER-UEF=ON \ -DPKG_USER-VTK=ON \ -DPKG_VORONOI=ON cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=OFF -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REAX=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake -- The CXX compiler identification is GNU 9.0.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Running check for auto-generated files from make-based build system -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- The Fortran compiler identification is GNU 9.0.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- The C compiler identification is GNU 9.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.15+") -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "80") -- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.34") -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found GZIP: /bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so -- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so -- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/arm-linux-gnueabihf/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- Looking for C++ include math.h -- Looking for C++ include math.h - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.0.1") -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib/arm-linux-gnueabihf/libOpenCL.so (found version "2.2") Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/atom_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/beck_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/charmm_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/colloid_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_debye_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_dsf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/device_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_long_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dpd_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/eam_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gauss_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj96_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_class2_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_debye_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_msm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cubic_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_dsf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_gromacs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/mie_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/morse_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_cpu_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_gpu_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/pppm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/soft_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/sw_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/table_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_mod_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_zbl_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ufm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/vashishta_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_colloid_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/zbl_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_lj_cl.h... -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating lmpinstalledpkgs.h... -- Building package: ASPHERE -- Building package: BODY -- Building package: CLASS2 -- Building package: COLLOID -- Building package: COMPRESS -- Building package: DIPOLE -- Building package: GRANULAR -- Building package: KSPACE -- Building package: MANYBODY -- Building package: MC -- Building package: MEAM -- Building package: MISC -- Building package: MOLECULE -- Building package: PERI -- Building package: REPLICA -- Building package: RIGID -- Building package: SHOCK -- Building package: SNAP -- Building package: SRD -- Building package: PYTHON -- Building package: MPIIO -- Building package: VORONOI -- Building package: POEMS -- Building package: USER-ATC -- Building package: USER-AWPMD -- Building package: USER-BOCS -- Building package: USER-CGDNA -- Building package: USER-MESO -- Building package: USER-CGSDK -- Building package: USER-DIFFRACTION -- Building package: USER-DPD -- Building package: USER-DRUDE -- Building package: USER-EFF -- Building package: USER-FEP -- Building package: USER-H5MD -- Building package: USER-LB -- Building package: USER-MANIFOLD -- Building package: USER-MEAMC -- Building package: USER-MGPT -- Building package: USER-MISC -- Building package: USER-MOFFF -- Building package: USER-MOLFILE -- Building package: USER-NETCDF -- Building package: USER-PHONON -- Building package: USER-QTB -- Building package: USER-SMD -- Building package: USER-SMTBQ -- Building package: USER-SPH -- Building package: USER-TALLY -- Building package: USER-UEF -- Building package: USER-VTK -- Building package: USER-OMP -- Building package: OPT -- Building package: GPU -- The following packages have been found: * MPI * OpenMP * PkgConfig * FFTW3 * BLAS * Threads * LAPACK * PythonInterp * PythonLibs * JPEG * PNG * VORO * NetCDF * Eigen3 * VTK * ZLIB * HDF5 * OpenCL -- <<< Build configuration >>> Build type None Install path /usr Compilers and Flags: C++ Compiler /usr/bin/c++ Type GNU Version 9.0.0 C++ Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLIC_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL);LAMMPS_VTK -- Fortran Compiler /usr/bin/gfortran Type GNU Version 9.0.0 Fortran Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -- C Compiler /usr/bin/cc Type GNU Version 9.0.0 C Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -- Linker flags: Executable -Wl,-Bsymbolic-functions -Wl,-z,relro -- Static libraries -- Link libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so;/usr/lib/arm-linux-gnueabihf/libfftw3.so;/usr/lib/arm-linux-gnueabihf/libpython2.7.so;/usr/lib/arm-linux-gnueabihf/libjpeg.so;/usr/lib/arm-linux-gnueabihf/libpng.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libvoro++.so;molfile;/usr/lib/arm-linux-gnueabihf/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/arm-linux-gnueabihf/libfreetype.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/arm-linux-gnueabihf/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/arm-linux-gnueabihf/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/arm-linux-gnueabihf/libproj.so;vtkIOAMR;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/arm-linux-gnueabihf/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/arm-linux-gnueabihf/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/arm-linux-gnueabihf/libtheoraenc.so;/usr/lib/arm-linux-gnueabihf/libtheoradec.so;/usr/lib/arm-linux-gnueabihf/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/arm-linux-gnueabihf/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/arm-linux-gnueabihf/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;m;meam;poems;atc;awpmd;h5md;gpu;gfortran;gcc_s;gcc;c -- Using mpi with headers in /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include and /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so -- GPU Api: OPENCL -- OCL Tune: GENERIC -- GPU Precision: MIXED -- Using FFTW3 as FFT -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_build -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build cd debian/build && make V=1 -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' /usr/bin/cmake -S"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" -B"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= Scanning dependencies of target awpmd make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp" Scanning dependencies of target poems make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp" [ 1%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp" Scanning dependencies of target atc make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 1%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp" Scanning dependencies of target gpu make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 1%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp" [ 1%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp" [ 1%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 1%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o" -c 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp" /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp" [ 3%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp" [ 3%] Linking CXX static library libawpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc libawpmd.a "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" /usr/bin/ranlib libawpmd.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 3%] Built target awpmd make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= Scanning dependencies of target meam make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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[-Wmissing-include-dirs] [ 3%] Building C object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o /usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp" [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp" [ 3%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp" [ 3%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp" [ 4%] Linking Fortran static library libmeam.a /usr/bin/cmake -P CMakeFiles/meam.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/meam.dir/link.txt --verbose=1 /usr/bin/ar qc libmeam.a "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o" /usr/bin/ranlib libmeam.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 4%] Built target meam make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= Scanning dependencies of target h5md make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 4%] Building C object CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o /usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 4%] Linking C static library libh5md.a /usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 /usr/bin/ar qc libh5md.a "CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o" /usr/bin/ranlib libh5md.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 4%] Built target h5md make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= Scanning dependencies of target ocl_get_devices make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp" make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 4%] Building CXX object CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp" In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void ucl_opencl::UCL_Device::add_properties(cl_device_id)’: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp" [ 4%] Linking CXX executable ocl_get_devices /usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 4%] Built target ocl_get_devices [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp" [ 4%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 5%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp" [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp" /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp" /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 8%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp" [ 8%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void ucl_opencl::UCL_Device::add_properties(cl_device_id)’: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp" In file included from /usr/include/c++/9/set:60, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]’: /usr/include/c++/9/bits/stl_tree.h:2445:7: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 2445 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/map:61, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]’: /usr/include/c++/9/bits/stl_tree.h:2445:7: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 2445 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp" In file included from /usr/include/c++/9/map:61, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/9/bits/stl_map.h: In member function ‘void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp" [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual void ATC::FE_Rectangular3DMesh::partition_mesh()’: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual void ATC::FE_Uniform3DMesh::partition_mesh()’: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1910:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1910 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1911 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1910:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘int ATC::GhostModifierDampedHarmonicLayers::find_layers()’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]’: /usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 112 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp" In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In constructor ‘KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 161 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 162 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 161 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 162 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/vector.tcc: In static member function ‘static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D&)’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 12%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp: In member function ‘void ATC::OutputManager::read_restart_file(std::string, ATC::RESTART_LIST*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 164 | fread(&myVal,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp" In file included from /usr/include/c++/9/vector:67, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)’: /usr/include/c++/9/bits/stl_vector.h:1159:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1159 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp:18: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp" In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp" In file included from /usr/include/c++/9/vector:72, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:8, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:427:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 427 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:122:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 122 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1810:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1810 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1829 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1829:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]’: /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1929 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1929:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1943:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1943 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]’: /usr/include/c++/9/bits/stl_algo.h:1957:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1957 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1958 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1874:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1874 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1879 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp:26: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ In file included from /usr/include/CL/cl.h:32, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp" [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp: In member function ‘virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 133 | fread(&theta0[1],sizeof(double),atom->nangletypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 338 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:347:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 347 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 350 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:322:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 322 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:331:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 331 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:334:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 334 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp: In member function ‘virtual void LAMMPS_NS::BondZero::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 131 | fread(&r0[1],sizeof(double),atom->nbondtypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond_local.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp.o" -c 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" 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"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 323 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 332 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 335 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp: In member function ‘virtual void LAMMPS_NS::FixAveChunk::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp:1058:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 1058 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 537 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 828 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 499 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 700 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 911 | if (fileend > 0) ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp: In member function ‘virtual void LAMMPS_NS::FixHalt::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp:187:52: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘LAMMPS_NS::bigint’ {aka ‘long long int’} [-Wformat=] 187 | sprintf(str,"Fix halt %s condition met on step %ld with value %g", | ~~^ | | | long int | %lld 188 | id,update->ntimestep,attvalue); | ~~~~~~~~~~~~~~~~~ | | | LAMMPS_NS::bigint {aka long long int} [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_restrain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_rg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_rg.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csld.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj93.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:730:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 730 | if (me == 0) fread(&ngroup,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:742:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 742 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:746:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 746 | if (me == 0) fread(names[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 320 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 329 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 332 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp: In member function ‘void LAMMPS_NS::KSpace::qsum_qsq()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp:280:3: error: ‘nlocal’ not specified in enclosing ‘parallel’ 280 | for (int i = 0; i < nlocal; i++) { | ^~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp:278:9: error: enclosing ‘parallel’ 278 | #pragma omp parallel for default(none) reduction(+:qsum_local,qsqsum_local) | ^~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp:281:19: error: ‘q’ not specified in enclosing ‘parallel’ 281 | qsum_local += q[i]; | ^ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp:278:9: error: enclosing ‘parallel’ 278 | #pragma omp parallel for default(none) reduction(+:qsum_local,qsqsum_local) | ^~~ make[3]: *** [CMakeFiles/lmp.dir/build.make:2627: CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[2]: *** [CMakeFiles/Makefile2:229: CMakeFiles/lmp.dir/all] Error 2 make[2]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[1]: *** [Makefile:133: all] Error 2 make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' dh_auto_build: cd debian/build && make V=1 -j4 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:10: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190110-0326 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 835264 Build-Time: 733 Distribution: disco Fail-Stage: build Host Architecture: armhf Install-Time: 134 Job: lammps_0~20180822.gitb47e49223+dfsg1-2.dsc Machine Architecture: arm64 Package: lammps Package-Time: 884 Source-Version: 0~20180822.gitb47e49223+dfsg1-2 Space: 835264 Status: attempted Version: 0~20180822.gitb47e49223+dfsg1-2 -------------------------------------------------------------------------------- Finished at 20190110-0326 Build needed 00:14:44, 835264k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15936756 Scanning for processes to kill in build PACKAGEBUILD-15936756