https://launchpad.net/ubuntu/+archive/test-rebuild-20190614-gcc9/+build/17093290 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-045 4.4.0-151-generic #178-Ubuntu SMP Tue Jun 11 08:30:22 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 Jun 17:45:11 ntpdate[1887]: adjust time server 10.211.37.1 offset -0.000416 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 --image-type chroot /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-17093290 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 Starting target for build PACKAGEBUILD-17093290 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan main' 'deb http://ftpmaster.internal/ubuntu eoan main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-17093290 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 Adding trusted keys to build-PACKAGEBUILD-17093290 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 Updating target for build PACKAGEBUILD-17093290 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan InRelease [20.7 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan InRelease [15.4 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 Packages [37.2 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main Translation-en [12.9 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main amd64 Packages [978 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main Translation-en [503 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/restricted amd64 Packages [16.3 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/restricted Translation-en [5528 B] Get:10 http://ftpmaster.internal/ubuntu eoan/universe amd64 Packages [9014 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main amd64 Packages [15.1 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main Translation-en [4628 B] Get:13 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5283 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/multiverse amd64 Packages [157 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/multiverse Translation-en [112 kB] Fetched 16.4 MB in 3s (5450 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libgcc-9-dev libisl21 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libitm1 libjson-c3 libkmod2 liblsan0 liblz4-1 liblzma5 libmount1 libmpfr6 libmpx2 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 145 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 132 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 gcc-9-base amd64 9.1.0-4ubuntu1 [18.0 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6-dev amd64 2.29-0ubuntu2 [2541 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libgcc1 amd64 1:9.1.0-4ubuntu1 [40.7 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libstdc++6 amd64 9.1.0-4ubuntu1 [512 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libgomp1 amd64 9.1.0-4ubuntu1 [89.2 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libitm1 amd64 9.1.0-4ubuntu1 [28.0 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libatomic1 amd64 9.1.0-4ubuntu1 [9180 B] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libasan5 amd64 9.1.0-4ubuntu1 [395 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 liblsan0 amd64 9.1.0-4ubuntu1 [139 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libtsan0 amd64 9.1.0-4ubuntu1 [301 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-dev-bin amd64 2.29-0ubuntu2 [71.2 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main amd64 linux-libc-dev amd64 5.0.0-17.18 [1060 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libubsan1 amd64 9.1.0-4ubuntu1 [130 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libmpx2 amd64 8.3.0-14ubuntu1 [11.7 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libquadmath0 amd64 9.1.0-4ubuntu1 [146 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6 amd64 2.29-0ubuntu2 [2707 kB] Get:17 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 g++-8 amd64 8.3.0-14ubuntu1 [10.0 MB] Get:18 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-bin amd64 2.29-0ubuntu2 [626 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main amd64 base-files amd64 10.2ubuntu3 [60.4 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main amd64 debianutils amd64 4.8.6.1 [85.5 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main amd64 bash amd64 5.0-4ubuntu1 [635 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main amd64 bsdutils amd64 1:2.33.1-0.1ubuntu2 [63.8 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main amd64 coreutils amd64 8.30-3ubuntu1 [1243 kB] Get:24 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 gcc-8 amd64 8.3.0-14ubuntu1 [9780 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main amd64 lsb-base all 10.2019051400ubuntu1 [12.4 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main amd64 tar amd64 1.30+dfsg-6 [243 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main amd64 dpkg amd64 1.19.6ubuntu1 [1132 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main amd64 libperl5.28 amd64 5.28.1-6 [3827 kB] Get:29 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libstdc++-8-dev amd64 8.3.0-14ubuntu1 [1553 kB] Get:30 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libgcc-8-dev amd64 8.3.0-14ubuntu1 [2313 kB] Get:31 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libcc1-0 amd64 9.1.0-4ubuntu1 [48.9 kB] Get:32 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 binutils-x86-64-linux-gnu amd64 2.32.51.20190614-0ubuntu1 [1899 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main amd64 perl amd64 5.28.1-6 [204 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main amd64 perl-base amd64 5.28.1-6 [1511 kB] Get:35 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libbinutils amd64 2.32.51.20190614-0ubuntu1 [471 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main amd64 perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:37 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 binutils amd64 2.32.51.20190614-0ubuntu1 [3392 B] Get:38 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 binutils-common amd64 2.32.51.20190614-0ubuntu1 [202 kB] Get:39 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 cpp-8 amd64 8.3.0-14ubuntu1 [8902 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.6ubuntu1 [672 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main amd64 libgdbm6 amd64 1.18.1-4 [27.4 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main amd64 libgdbm-compat4 amd64 1.18.1-4 [6152 B] Get:43 http://ftpmaster.internal/ubuntu eoan/main amd64 zlib1g amd64 1:1.2.11.dfsg-1ubuntu2 [54.0 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main amd64 debconf all 1.5.72 [122 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main amd64 dash amd64 0.5.10.2-5 [85.9 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main amd64 diffutils amd64 1:3.7-3 [200 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main amd64 findutils amd64 4.6.0+git+20190209-2 [329 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main amd64 grep amd64 3.3-1 [149 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main amd64 gzip amd64 1.10-0ubuntu1 [94.4 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main amd64 libsmartcols1 amd64 2.33.1-0.1ubuntu2 [92.1 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main amd64 libuuid1 amd64 2.33.1-0.1ubuntu2 [21.0 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main amd64 libblkid1 amd64 2.33.1-0.1ubuntu2 [134 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main amd64 libfdisk1 amd64 2.33.1-0.1ubuntu2 [173 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main amd64 libpcre2-8-0 amd64 10.32-5 [180 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main amd64 libselinux1 amd64 2.9-1 [69.3 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main amd64 libmount1 amd64 2.33.1-0.1ubuntu2 [145 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main amd64 libncurses6 amd64 6.1+20181013-2ubuntu2 [101 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main amd64 libtinfo6 amd64 6.1+20181013-2ubuntu2 [83.8 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main amd64 libncursesw6 amd64 6.1+20181013-2ubuntu2 [131 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main amd64 fdisk amd64 2.33.1-0.1ubuntu2 [119 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main amd64 login amd64 1:4.5-1.1ubuntu2 [264 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main amd64 util-linux amd64 2.33.1-0.1ubuntu2 [1002 kB] Get:63 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 gcc-8-base amd64 8.3.0-14ubuntu1 [18.2 kB] Get:64 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 cpp-9 amd64 9.1.0-4ubuntu1 [9698 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main amd64 ncurses-bin amd64 6.1+20181013-2ubuntu2 [164 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main amd64 sed amd64 4.7-1 [190 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main amd64 libdebconfclient0 amd64 0.249ubuntu1 [6388 B] Get:68 http://ftpmaster.internal/ubuntu eoan/main amd64 base-passwd amd64 3.5.46 [47.4 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main amd64 ncurses-base all 6.1+20181013-2ubuntu2 [17.9 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main amd64 sysvinit-utils amd64 2.93-8ubuntu1 [19.4 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main amd64 libnettle6 amd64 3.4.1-1 [110 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main amd64 libhogweed4 amd64 3.4.1-1 [140 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main amd64 libp11-kit0 amd64 0.23.15-2 [184 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main amd64 libunistring2 amd64 0.9.10-1ubuntu2 [369 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main amd64 libgnutls30 amd64 3.6.7-4ubuntu1 [771 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main amd64 liblz4-1 amd64 1.8.3-1ubuntu1 [71.7 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main amd64 liblzma5 amd64 5.2.4-1 [92.4 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main amd64 systemd-sysv amd64 240-6ubuntu9 [9380 B] Get:80 http://ftpmaster.internal/ubuntu eoan/main amd64 libacl1 amd64 2.2.53-4 [18.3 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main amd64 libapparmor1 amd64 2.13.2-9ubuntu7 [34.6 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main amd64 libaudit-common all 1:2.8.4-3ubuntu1 [4200 B] Get:83 http://ftpmaster.internal/ubuntu eoan/main amd64 libcap-ng0 amd64 0.7.9-2 [11.0 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main amd64 libaudit1 amd64 1:2.8.4-3ubuntu1 [38.9 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main amd64 libcap2 amd64 1:2.25-2 [13.3 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.2 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main amd64 libudev1 amd64 240-6ubuntu9 [65.3 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu4 [127 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main amd64 libjson-c3 amd64 0.12.1+ds-2 [22.2 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main amd64 libssl1.1 amd64 1.1.1c-1ubuntu3 [1312 kB] Get:91 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main amd64 g++ amd64 4:9.1.0-1ubuntu4 [1564 B] Get:92 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main amd64 gcc amd64 4:9.1.0-1ubuntu4 [5172 B] Get:93 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main amd64 cpp amd64 4:9.1.0-1ubuntu4 [42.5 kB] Get:94 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libgcc-9-dev amd64 9.1.0-4ubuntu1 [2361 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main amd64 libcryptsetup12 amd64 2:2.1.0-5ubuntu1 [149 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main amd64 libgpg-error0 amd64 1.36-1 [57.7 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main amd64 libidn11 amd64 1.33-2.2ubuntu2 [46.2 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main amd64 libkmod2 amd64 26-1ubuntu1 [42.8 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main amd64 libpam0g amd64 1.3.1-5ubuntu1 [56.2 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main amd64 libseccomp2 amd64 2.4.1-0ubuntu0.19.10.3 [39.0 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main amd64 mount amd64 2.33.1-0.1ubuntu2 [113 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main amd64 libsepol1 amd64 2.9-1 [254 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main amd64 libsemanage-common all 2.9-1 [9916 B] Get:104 http://ftpmaster.internal/ubuntu eoan/main amd64 libsemanage1 amd64 2.9-1 [85.4 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu1 [38.1 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main amd64 libpam-modules amd64 1.3.1-5ubuntu1 [248 kB] Get:107 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 gcc-9 amd64 9.1.0-4ubuntu1 [10.3 MB] Get:108 http://ftpmaster.internal/ubuntu eoan/main amd64 passwd amd64 1:4.5-1.1ubuntu2 [816 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main amd64 adduser all 3.118ubuntu1 [163 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main amd64 systemd amd64 240-6ubuntu9 [3337 kB] Get:111 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 libstdc++-9-dev amd64 9.1.0-4ubuntu1 [1702 kB] Get:112 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main amd64 g++-9 amd64 9.1.0-4ubuntu1 [11.0 MB] Get:113 http://ftpmaster.internal/ubuntu eoan/main amd64 libsystemd0 amd64 240-6ubuntu9 [245 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main amd64 libzstd1 amd64 1.3.8+dfsg-3 [226 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main amd64 libapt-pkg5.0 amd64 1.8.2+19.10 [821 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcrypt20 amd64 1.8.4-5ubuntu1 [419 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main amd64 gpgv amd64 2.2.12-1ubuntu3 [197 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main amd64 apt amd64 1.8.2+19.10 [1274 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main amd64 libext2fs2 amd64 1.45.1-1ubuntu1 [185 kB] Get:120 http://ftpmaster.internal/ubuntu eoan/main amd64 e2fsprogs amd64 1.45.1-1ubuntu1 [534 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main amd64 init amd64 1.56+nmu1 [6080 B] Get:122 http://ftpmaster.internal/ubuntu eoan/main amd64 libattr1 amd64 1:2.4.48-4 [12.6 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main amd64 libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main amd64 libpcre3 amd64 2:8.39-12 [231 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main amd64 libisl21 amd64 0.21-1 [571 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main amd64 libmpfr6 amd64 4.0.2-1 [240 kB] Get:127 http://ftpmaster.internal/ubuntu 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Setting up cpp-9 (9.1.0-4ubuntu1) ... Setting up libbinutils:amd64 (2.32.51.20190614-0ubuntu1) ... Setting up cpp-8 (8.3.0-14ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu2) ... Setting up openssl (1.1.1c-1ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.0-1) ... Setting up libcc1-0:amd64 (9.1.0-4ubuntu1) ... Setting up liblsan0:amd64 (9.1.0-4ubuntu1) ... Setting up libitm1:amd64 (9.1.0-4ubuntu1) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up binutils-x86-64-linux-gnu (2.32.51.20190614-0ubuntu1) ... Setting up libtsan0:amd64 (9.1.0-4ubuntu1) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libreadline8:amd64 (8.0-1) ... Setting up e2fsprogs (1.45.1-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up binutils (2.32.51.20190614-0ubuntu1) ... Setting up libgcc-9-dev:amd64 (9.1.0-4ubuntu1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libgcc-8-dev:amd64 (8.3.0-14ubuntu1) ... Setting up libperl5.28:amd64 (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:amd64 (2.29-0ubuntu2) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:amd64 (8.3.0-14ubuntu1) ... Setting up gcc-9 (9.1.0-4ubuntu1) ... Setting up gcc-8 (8.3.0-14ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:amd64 (9.1.0-4ubuntu1) ... Setting up pkgbinarymangler (144) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up perl (5.28.1-6) ... Setting up g++-9 (9.1.0-4ubuntu1) ... Setting up libdpkg-perl (1.19.6ubuntu1) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-14ubuntu1) ... Setting up dpkg-dev (1.19.6ubuntu1) ... Setting up build-essential (12.6ubuntu1) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17093290 amd64 eoan -c chroot:build-PACKAGEBUILD-17093290 --arch=amd64 --dist=eoan --nolog -A libbpp-seq-omics_2.4.1-3.dsc Initiating build PACKAGEBUILD-17093290 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-151-generic #178-Ubuntu SMP Tue Jun 11 08:30:22 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-045.buildd +==============================================================================+ | libbpp-seq-omics 2.4.1-3 (amd64) 22 Jun 2019 17:45 | +==============================================================================+ Package: libbpp-seq-omics Version: 2.4.1-3 Source Version: 2.4.1-3 Distribution: eoan Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-l3WaH7/libbpp-seq-omics-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-omics-l3WaH7' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17093290/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq-omics_2.4.1-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-OlFxr0/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-OlFxr0/apt_archive ./ InRelease Get:2 copy:/<>/resolver-OlFxr0/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-OlFxr0/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-OlFxr0/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-OlFxr0/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-OlFxr0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13892 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1) Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1) dpkg-deb: building package 'sbuild-build-depends-libbpp-seq-omics-dummy' in '/<>/resolver-2P1SOG/apt_archive/sbuild-build-depends-libbpp-seq-omics-dummy.deb'. Ign:1 copy:/<>/resolver-2P1SOG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2P1SOG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2P1SOG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2P1SOG/apt_archive ./ Sources [247 B] Get:5 copy:/<>/resolver-2P1SOG/apt_archive ./ Packages [564 B] Fetched 2930 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbpp-seq-omics build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-seq-omics-dummy 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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12.1.1ubuntu1 [899 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/universe amd64 libbpp-core4 amd64 2.4.1-3 [621 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/universe amd64 libbpp-core-dev amd64 2.4.1-3 [947 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/universe amd64 libbpp-seq12 amd64 2.4.1-3 [532 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/universe amd64 libbpp-seq-dev amd64 2.4.1-3 [758 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.5 MB in 1s (39.3 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up libbpp-core4:amd64 (2.4.1-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up d-shlibs (0.84ubuntu2) ... Setting up libk5crypto3:amd64 (1.17-3) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-3) ... Setting up libbpp-seq12:amd64 (2.4.1-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-10) ... Setting up libarchive13:amd64 (3.3.3-4) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up libbpp-core-dev (2.4.1-3) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libssh-4:amd64 (0.8.7-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-3) ... Setting up gettext (0.19.8.1-9) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-3) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3ubuntu2) ... Setting up libcurl4:amd64 (7.64.0-4ubuntu1) ... Setting up cmake (3.13.4-1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libbpp-seq-omics-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-151-generic amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190614-0ubuntu1 dpkg-dev_1.19.6ubuntu1 g++-8_8.3.0-14ubuntu1 g++-9_9.1.0-4ubuntu1 gcc-8_8.3.0-14ubuntu1 gcc-9_9.1.0-4ubuntu1 libc6-dev_2.29-0ubuntu2 libstdc++-8-dev_8.3.0-14ubuntu1 libstdc++-9-dev_9.1.0-4ubuntu1 libstdc++6_9.1.0-4ubuntu1 linux-libc-dev_5.0.0-17.18 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.8.2+19.10 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu3 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190614-0ubuntu1 binutils-common_2.32.51.20190614-0ubuntu1 binutils-x86-64-linux-gnu_2.32.51.20190614-0ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu2 build-essential_12.6ubuntu1 bzip2_1.0.6-9 ca-certificates_20190110 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3ubuntu1 cpp_4:9.1.0-1ubuntu4 cpp-8_8.3.0-14ubuntu1 cpp-9_9.1.0-4ubuntu1 d-shlibs_0.84ubuntu2 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1ubuntu1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dmsetup_2:1.02.155-2ubuntu4 dpkg_1.19.6ubuntu1 dpkg-dev_1.19.6ubuntu1 dwz_0.12-3 e2fslibs_1.45.1-1ubuntu1 e2fsprogs_1.45.1-1ubuntu1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu2 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:9.1.0-1ubuntu4 g++-8_8.3.0-14ubuntu1 g++-9_9.1.0-4ubuntu1 gcc_4:9.1.0-1ubuntu4 gcc-8_8.3.0-14ubuntu1 gcc-8-base_8.3.0-14ubuntu1 gcc-9_9.1.0-4ubuntu1 gcc-9-base_9.1.0-4ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu1 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.0_1.8.2+19.10 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libargon2-1_0~20171227-0.2 libasan5_9.1.0-4ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-3 libassuan0_2.5.3-1 libatomic1_9.1.0-4ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3ubuntu1 libaudit1_1:2.8.4-3ubuntu1 libbinutils_2.32.51.20190614-0ubuntu1 libblkid1_2.33.1-0.1ubuntu2 libbpp-core-dev_2.4.1-3 libbpp-core4_2.4.1-3 libbpp-seq-dev_2.4.1-3 libbpp-seq12_2.4.1-3 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.29-0ubuntu2 libc-dev-bin_2.29-0ubuntu2 libc6_2.29-0ubuntu2 libc6-dev_2.29-0ubuntu2 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.1.0-4ubuntu1 libcom-err2_1.45.1-1ubuntu1 libcomerr2_1.45.1-1ubuntu1 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5ubuntu1 libcurl4_7.64.0-4ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu4 libdpkg-perl_1.19.6ubuntu1 libelf1_0.176-1.1 libexpat1_2.2.6-1 libext2fs2_1.45.1-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libgcc-8-dev_8.3.0-14ubuntu1 libgcc-9-dev_9.1.0-4ubuntu1 libgcc1_1:9.1.0-4ubuntu1 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.60.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4ubuntu1 libgomp1_9.1.0-4ubuntu1 libgpg-error0_1.36-1 libgssapi-krb5-2_1.17-3 libgssapi3-heimdal_7.5.0+dfsg-3 libhcrypto4-heimdal_7.5.0+dfsg-3 libheimbase1-heimdal_7.5.0+dfsg-3 libheimntlm0-heimdal_7.5.0+dfsg-3 libhogweed4_3.4.1-1 libhx509-5-heimdal_7.5.0+dfsg-3 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libisl21_0.21-1 libitm1_9.1.0-4ubuntu1 libjson-c3_0.12.1+ds-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-3 libkeyutils1_1.6-6 libkmod2_26-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-3 libkrb5-3_1.17-3 libkrb5support0_1.17-3 libldap-2.4-2_2.4.47+dfsg-3ubuntu2 libldap-common_2.4.47+dfsg-3ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_9.1.0-4ubuntu1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-14ubuntu1 libncurses6_6.1+20181013-2ubuntu2 libncursesw6_6.1+20181013-2ubuntu2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1~exp4 libprocps7_2:3.3.15-2ubuntu2 libpsl5_0.20.2-2 libquadmath0_9.1.0-4ubuntu1 libreadline7_7.0-5 libreadline8_8.0-1 librhash0_1.3.8-1 libroken18-heimdal_7.5.0+dfsg-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-1 libsemanage-common_2.9-1 libsemanage1_2.9-1 libsepol1_2.9-1 libsigsegv2_2.12-2 libslang2_2.3.2-3 libsmartcols1_2.33.1-0.1ubuntu2 libsqlite3-0_3.27.2-3 libss2_1.45.1-1ubuntu1 libssh-4_0.8.7-1 libssl1.1_1.1.1c-1ubuntu3 libstdc++-8-dev_8.3.0-14ubuntu1 libstdc++-9-dev_9.1.0-4ubuntu1 libstdc++6_9.1.0-4ubuntu1 libsystemd0_240-6ubuntu9 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2ubuntu2 libtool_2.4.6-10 libtsan0_9.1.0-4ubuntu1 libubsan1_9.1.0-4ubuntu1 libuchardet0_0.0.6-3 libudev1_240-6ubuntu9 libunistring2_0.9.10-1ubuntu2 libusb-0.1-4_2:0.1.12-32 libuuid1_2.33.1-0.1ubuntu2 libuv1_1.24.1-1 libwind0-heimdal_7.5.0+dfsg-3 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.0.0-17.18 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_10.2019051400ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17ubuntu3 mount_2.33.1-0.1ubuntu2 multiarch-support_2.29-0ubuntu2 ncurses-base_6.1+20181013-2ubuntu2 ncurses-bin_6.1+20181013-2ubuntu2 openssl_1.1.1c-1ubuntu3 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-seq-omics-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-6ubuntu9 systemd-sysv_240-6ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.93-8ubuntu1 tar_1.30+dfsg-6 tzdata_2019a-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Mar 16 18:11:34 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.1-3.dsc dpkg-source: info: extracting libbpp-seq-omics in libbpp-seq-omics-2.4.1 dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17093290 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17093290 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17093290 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 9.1.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 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--color= Scanning dependencies of target bpp-seq-omics-shared Scanning dependencies of target bpp-seq-omics-static make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /<>/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /<>/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /<>/src/Bpp/Seq/Io/Fastq.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 80%] Linking CXX shared library libbpp-seq-omics.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= Scanning dependencies of target test_gff make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /<>/test/test_gff.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 84%] Linking CXX executable test_gff cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/<>/obj-x86_64-linux-gnu/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target test_gff make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Scanning dependencies of target test_fastq make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /<>/test/test_fastq.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 91%] Linking CXX executable test_fastq cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/<>/obj-x86_64-linux-gnu/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target test_fastq [ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 97%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [100%] Linking CXX static library libbpp-seq-omics.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/bin/ranlib libbpp-seq-omics.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' 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Passed 0.00 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.01 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 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preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-seq-omics-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-seq-omics3/DEBIAN/symbols doesn't match completely debian/libbpp-seq-omics3.symbols.amd64 --- debian/libbpp-seq-omics3.symbols.amd64 (libbpp-seq-omics3_2.4.1-3_amd64) +++ dpkg-gensymbols6iVUYX 2019-06-22 17:47:12.737357047 +0000 @@ -22,8 +22,9 @@ _ZN3bpp11MafSequenceC1ERKS0_@Base 2.4.1 _ZN3bpp11MafSequenceD0Ev@Base 2.4.1 _ZN3bpp11MafSequenceD1Ev@Base 2.4.1 - _ZN3bpp11VectorTools11vectorUnionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKS8_ISB_SaISB_EE@Base 2.4.1 +#MISSING: 2.4.1-3# _ZN3bpp11VectorTools11vectorUnionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKS8_ISB_SaISB_EE@Base 2.4.1 _ZN3bpp11VectorTools18vectorIntersectionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKSB_SD_@Base 2.4.1 + _ZN3bpp11VectorTools6uniqueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKSB_@Base 2.4.1-3 _ZN3bpp12EdSymbolList11getListenerEm@Base 2.4.1 _ZN3bpp12EdSymbolList20afterSequenceChangedERKNS_22SymbolListEditionEventE@Base 2.4.1 _ZN3bpp12EdSymbolList20afterSequenceDeletedERKNS_23SymbolListDeletionEventE@Base 2.4.1 @@ -37,11 +38,12 @@ _ZN3bpp12EdSymbolList25beforeSequenceSubstitutedERKNS_27SymbolListSubstitutionEventE@Base 2.4.1 _ZN3bpp12EdSymbolList7shuffleEv@Base 2.4.1 _ZN3bpp12EdSymbolListixEm@Base 2.4.1 - _ZN3bpp12SequenceMaskC1ERKSt6vectorIbSaIbEEb@Base 2.4.1 +#MISSING: 2.4.1-3# _ZN3bpp12SequenceMaskC1ERKSt6vectorIbSaIbEEb@Base 2.4.1 _ZN3bpp12SequenceMaskD0Ev@Base 2.4.1 _ZN3bpp13AlphabetStateD0Ev@Base 2.4.1 _ZN3bpp13AlphabetStateD1Ev@Base 2.4.1 _ZN3bpp13BasicSequenceD0Ev@Base 2.4.1 + _ZN3bpp13SequenceTools6subseqERKNS_8SequenceEmmRS1_@Base 2.4.1-3 _ZN3bpp14LetterAlphabet13registerStateEPNS_13AlphabetStateE@Base 2.4.1 _ZN3bpp14LetterAlphabet8setStateEmPNS_13AlphabetStateE@Base 2.4.1 _ZN3bpp14SequenceWalkerC1ERKNS_8SequenceE@Base 2.4.1 @@ -181,7 +183,7 @@ _ZN3bpp22WindowSplitMafIteratorD0Ev@Base 2.4.1 _ZN3bpp22WindowSplitMafIteratorD1Ev@Base 2.4.1 _ZN3bpp23VectorSequenceContainerD2Ev@Base 2.4.1 - _ZN3bpp24AlignedSequenceContainerC1ERKS0_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZN3bpp24AlignedSequenceContainerC1ERKS0_@Base 2.4.1 _ZN3bpp24EntropyFilterMafIterator16nextRemovedBlockEv@Base 2.4.1 _ZN3bpp24EntropyFilterMafIterator20analyseCurrentBlock_Ev@Base 2.4.1 _ZN3bpp24EntropyFilterMafIteratorD0Ev@Base 2.4.1 @@ -323,6 +325,7 @@ _ZN3bpp9MafParserD0Ev@Base 2.4.1 _ZN3bpp9MafParserD1Ev@Base 2.4.1 _ZN3bpp9TextTools2toIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 + _ZN3bpp9TextTools8toStringIcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1-3 _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 _ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 _ZN3bpp9TextTools8toStringIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1 @@ -340,6 +343,7 @@ _ZNK3bpp11MafSequence4stopEv@Base 2.4.1 _ZNK3bpp11MafSequence5cloneEv@Base 2.4.1 _ZNK3bpp11MafSequence5startEv@Base 2.4.1 + _ZNK3bpp11MafSequence8getRangeEb@Base 2.4.1-3 _ZNK3bpp12EdSymbolList10getContentEv@Base 2.4.1 _ZNK3bpp12EdSymbolList11getAlphabetEv@Base 2.4.1 _ZNK3bpp12EdSymbolList11getListenerEm@Base 2.4.1 @@ -462,7 +466,7 @@ _ZNK3bpp6NumberIiE8toStringB5cxx11Ev@Base 2.4.1 _ZNK3bpp6NumberIjE5cloneEv@Base 2.4.1 _ZNK3bpp6NumberIjE8toStringB5cxx11Ev@Base 2.4.1 - _ZNK3bpp8MafBlock11getSequenceEm@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNK3bpp8MafBlock11getSequenceEm@Base 2.4.1 _ZNK3bpp8MafBlock14getDescriptionB5cxx11Ev@Base 2.4.1 _ZNK3bpp8MafBlock21getSequenceForSpeciesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 _ZNK3bpp8MafBlock5cloneEv@Base 2.4.1 @@ -476,7 +480,7 @@ _ZNK3bpp8SeqRange5cloneEv@Base 2.4.1 _ZNK3bpp8SeqRange9getStrandEv@Base 2.4.1 _ZNK3bpp9BppDouble5cloneEv@Base 2.4.1 - _ZNKSt15_Deque_iteratorISt6vectorIbSaIbEERS2_PS2_EplEl@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNKSt15_Deque_iteratorISt6vectorIbSaIbEERS2_PS2_EplEl@Base 2.4.1 _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.1 _ZNSt11_Deque_baseIPN3bpp8MafBlockESaIS2_EED1Ev@Base 2.4.1 _ZNSt11_Deque_baseIPN3bpp8MafBlockESaIS2_EED2Ev@Base 2.4.1 @@ -486,9 +490,9 @@ _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.4.1 _ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 2.4.1 _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 2.4.1 - _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 2.4.1 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp10BppNumberIESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.1 - _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_@Base 2.4.1 _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1 _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1 _ZNSt5dequeIPN3bpp8MafBlockESaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_@Base 2.4.1 @@ -497,6 +501,7 @@ _ZNSt5dequeISt6vectorIiSaIiEESaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_@Base 2.4.1 _ZNSt5dequeISt6vectorIiSaIiEESaIS2_EE19_M_destroy_data_auxESt15_Deque_iteratorIS2_RS2_PS2_ES8_@Base 2.4.1 _ZNSt5dequeIjSaIjEE16_M_push_back_auxIJjEEEvDpOT_@Base 2.4.1 + _ZNSt5dequeImSaImEE17_M_push_front_auxIJmEEEvDpOT_@Base 2.4.1-3 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 @@ -507,7 +512,7 @@ _ZNSt6vectorIPKN3bpp11MafSequenceESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.1 _ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 _ZNSt6vectorIPN3bpp13SiteContainerESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 - _ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1 _ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 _ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 _ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 @@ -523,21 +528,21 @@ _ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev@Base 2.4.1 _ZNSt6vectorIS_ImSaImEESaIS1_EED1Ev@Base 2.4.1 _ZNSt6vectorIS_ImSaImEESaIS1_EED2Ev@Base 2.4.1 - _ZNSt6vectorIbSaIbEEC1ERKS1_@Base 2.4.1 - _ZNSt6vectorIbSaIbEEC2ERKS1_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorIbSaIbEEC1ERKS1_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorIbSaIbEEC2ERKS1_@Base 2.4.1 _ZNSt6vectorIiSaIiEE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.4.1 - _ZNSt6vectorIiSaIiEEC1ERKS1_@Base 2.4.1 - _ZNSt6vectorIiSaIiEEC2ERKS1_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorIiSaIiEEC1ERKS1_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorIiSaIiEEC2ERKS1_@Base 2.4.1 _ZNSt6vectorIiSaIiEEaSERKS1_@Base 2.4.1 _ZNSt6vectorIjSaIjEE14_M_fill_assignEmRKj@Base 2.4.1 _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.4.1 _ZNSt6vectorImSaImEE12emplace_backIJmEEEvDpOT_@Base 2.4.1 _ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 2.4.1 _ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 2.4.1 - _ZNSt6vectorImSaImEE9push_backERKm@Base 2.4.1 - _ZNSt6vectorImSaImEEC1ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1 - _ZNSt6vectorImSaImEEC2ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorImSaImEE9push_backERKm@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorImSaImEEC1ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1 +#MISSING: 2.4.1-3# _ZNSt6vectorImSaImEEC2ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1 _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIN9__gnu_cxx17__normal_iteratorIPcS4_EEEEvT_SA_St20forward_iterator_tag@Base 2.4.1 _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 2.4.1 _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:10: binary] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190622-1747 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 307120 Build-Time: 68 Distribution: eoan Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: libbpp-seq-omics_2.4.1-3.dsc Machine Architecture: amd64 Package: libbpp-seq-omics Package-Time: 78 Source-Version: 2.4.1-3 Space: 307120 Status: attempted Version: 2.4.1-3 -------------------------------------------------------------------------------- Finished at 20190622-1747 Build needed 00:01:18, 307120k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17093290 Scanning for processes to kill in build PACKAGEBUILD-17093290