https://launchpad.net/ubuntu/+archive/test-rebuild-20190614-gcc9/+build/17110845 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-013 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:12:37 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_177 python-lpbuildd_177 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 17 Sep 09:32:04 ntpdate[1913]: adjust time server 10.211.37.1 offset -0.019821 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 --image-type chroot /home/buildd/filecache-default/b148568f42c06950756bf7fea120011aafea366b Creating target for build PACKAGEBUILD-17110845 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 Starting target for build PACKAGEBUILD-17110845 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan main' 'deb http://ftpmaster.internal/ubuntu eoan main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-17110845 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 Adding trusted keys to build-PACKAGEBUILD-17110845 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 Updating target for build PACKAGEBUILD-17110845 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan InRelease [15.4 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main arm64 Packages [2820 B] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main Translation-en [4848 B] Get:5 http://ftpmaster.internal/ubuntu eoan/main arm64 Packages [936 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [504 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/restricted arm64 Packages [1064 B] Get:8 http://ftpmaster.internal/ubuntu eoan/restricted Translation-en [4836 B] Get:9 http://ftpmaster.internal/ubuntu eoan/universe arm64 Packages [8678 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5224 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/multiverse arm64 Packages [121 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/multiverse Translation-en [111 kB] Fetched 15.9 MB in 6s (2473 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: logsave The following packages will be upgraded: binutils binutils-aarch64-linux-gnu binutils-common build-essential coreutils cpp cpp-9 dpkg dpkg-dev e2fsprogs g++ g++-9 gcc gcc-9 gcc-9-base libapparmor1 libasan5 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-9-dev libgcc1 libgnutls30 libgomp1 libip4tc2 libisl21 libitm1 liblsan0 libp11-kit0 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libtsan0 libubsan1 linux-libc-dev login passwd 46 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 46.7 MB of archives. After this operation, 814 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main arm64 coreutils arm64 8.30-3ubuntu2 [1174 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main arm64 dpkg arm64 1.19.7ubuntu2 [1115 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main arm64 login arm64 1:4.5-1.1ubuntu4 [261 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main arm64 libc6-dev arm64 2.30-0ubuntu1 [2091 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main arm64 libc-dev-bin arm64 2.30-0ubuntu1 [64.2 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main arm64 linux-libc-dev arm64 5.3.0-10.11 [1042 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main arm64 libcc1-0 arm64 9.2.1-8ubuntu1 [46.5 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main arm64 binutils-aarch64-linux-gnu arm64 2.32.51.20190905-0ubuntu1 [2022 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main arm64 libbinutils arm64 2.32.51.20190905-0ubuntu1 [471 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main arm64 binutils-common arm64 2.32.51.20190905-0ubuntu1 [203 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main arm64 binutils arm64 2.32.51.20190905-0ubuntu1 [3392 B] Get:12 http://ftpmaster.internal/ubuntu eoan/main arm64 gcc-9-base arm64 9.2.1-8ubuntu1 [19.2 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main arm64 libgcc1 arm64 1:9.2.1-8ubuntu1 [34.1 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main arm64 libgomp1 arm64 9.2.1-8ubuntu1 [80.5 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main arm64 libitm1 arm64 9.2.1-8ubuntu1 [25.0 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main arm64 libatomic1 arm64 9.2.1-8ubuntu1 [9172 B] Get:17 http://ftpmaster.internal/ubuntu eoan/main arm64 libasan5 arm64 9.2.1-8ubuntu1 [365 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main arm64 liblsan0 arm64 9.2.1-8ubuntu1 [126 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main arm64 libtsan0 arm64 9.2.1-8ubuntu1 [283 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main arm64 libubsan1 arm64 9.2.1-8ubuntu1 [121 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main arm64 g++-9 arm64 9.2.1-8ubuntu1 [9437 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main arm64 libstdc++-9-dev arm64 9.2.1-8ubuntu1 [1673 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main arm64 libgcc-9-dev arm64 9.2.1-8ubuntu1 [914 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main arm64 gcc-9 arm64 9.2.1-8ubuntu1 [9062 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main arm64 cpp-9 arm64 9.2.1-8ubuntu1 [8312 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main arm64 libstdc++6 arm64 9.2.1-8ubuntu1 [467 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main arm64 libisl21 arm64 0.21-2 [521 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main arm64 libc6 arm64 2.30-0ubuntu1 [2271 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main arm64 libc-bin arm64 2.30-0ubuntu1 [476 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main arm64 libext2fs2 arm64 1.45.3-4ubuntu1 [174 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main arm64 e2fsprogs arm64 1.45.3-4ubuntu1 [502 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main arm64 logsave arm64 1.45.3-4ubuntu1 [9584 B] Get:33 http://ftpmaster.internal/ubuntu eoan/main arm64 passwd arm64 1:4.5-1.1ubuntu4 [791 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main arm64 libp11-kit0 arm64 0.23.17-2 [177 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main arm64 libgnutls30 arm64 3.6.9-4build1 [721 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main arm64 libcom-err2 arm64 1.45.3-4ubuntu1 [8712 B] Get:37 http://ftpmaster.internal/ubuntu eoan/main arm64 libss2 arm64 1.45.3-4ubuntu1 [10.7 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main arm64 libapparmor1 arm64 2.13.3-5ubuntu1 [34.3 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main arm64 libdevmapper1.02.1 arm64 2:1.02.155-2ubuntu6 [110 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main arm64 libsqlite3-0 arm64 3.29.0-2 [494 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main arm64 g++ arm64 4:9.2.1-3.1ubuntu1 [1596 B] Get:42 http://ftpmaster.internal/ubuntu eoan/main arm64 gcc arm64 4:9.2.1-3.1ubuntu1 [5228 B] Get:43 http://ftpmaster.internal/ubuntu eoan/main arm64 cpp arm64 4:9.2.1-3.1ubuntu1 [27.6 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main arm64 dpkg-dev all 1.19.7ubuntu2 [679 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main arm64 libdpkg-perl all 1.19.7ubuntu2 [230 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main arm64 build-essential arm64 12.7ubuntu1 [4644 B] Get:47 http://ftpmaster.internal/ubuntu eoan/main arm64 libip4tc2 arm64 1.8.3-2ubuntu4 [20.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.7 MB in 2s (25.0 MB/s) (Reading database ... 12720 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_arm64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu1) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 12720 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.7ubuntu2_arm64.deb ... Unpacking dpkg (1.19.7ubuntu2) over (1.19.7ubuntu1) ... Setting up dpkg (1.19.7ubuntu2) ... (Reading database ... 12720 files and directories currently installed.) Preparing to unpack .../login_1%3a4.5-1.1ubuntu4_arm64.deb ... Unpacking login (1:4.5-1.1ubuntu4) over (1:4.5-1.1ubuntu3) ... Setting up login (1:4.5-1.1ubuntu4) ... (Reading database ... 12720 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu1) over (2.29-0ubuntu3) ... 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Setting up libip4tc2:arm64 (1.8.3-2ubuntu4) ... Setting up libisl21:arm64 (0.21-2) ... Setting up libapparmor1:arm64 (2.13.3-5ubuntu1) ... Setting up libsqlite3-0:arm64 (3.29.0-2) ... Setting up binutils-common:arm64 (2.32.51.20190905-0ubuntu1) ... Setting up linux-libc-dev:arm64 (5.3.0-10.11) ... Setting up libcom-err2:arm64 (1.45.3-4ubuntu1) ... Setting up libgomp1:arm64 (9.2.1-8ubuntu1) ... Setting up libasan5:arm64 (9.2.1-8ubuntu1) ... Setting up libatomic1:arm64 (9.2.1-8ubuntu1) ... Setting up libss2:arm64 (1.45.3-4ubuntu1) ... Setting up libdpkg-perl (1.19.7ubuntu2) ... Setting up logsave (1.45.3-4ubuntu1) ... Setting up libubsan1:arm64 (9.2.1-8ubuntu1) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.155-2ubuntu6) ... Setting up cpp-9 (9.2.1-8ubuntu1) ... Setting up libbinutils:arm64 (2.32.51.20190905-0ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu1) ... Setting up libcc1-0:arm64 (9.2.1-8ubuntu1) ... Setting up liblsan0:arm64 (9.2.1-8ubuntu1) ... Setting up libitm1:arm64 (9.2.1-8ubuntu1) ... Setting up libtsan0:arm64 (9.2.1-8ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190905-0ubuntu1) ... Setting up e2fsprogs (1.45.3-4ubuntu1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/e2scrub.conf ... Setting up binutils (2.32.51.20190905-0ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu2) ... Setting up libgcc-9-dev:arm64 (9.2.1-8ubuntu1) ... Setting up cpp (4:9.2.1-3.1ubuntu1) ... Setting up libc6-dev:arm64 (2.30-0ubuntu1) ... Setting up gcc-9 (9.2.1-8ubuntu1) ... Setting up libstdc++-9-dev:arm64 (9.2.1-8ubuntu1) ... Setting up gcc (4:9.2.1-3.1ubuntu1) ... Setting up g++-9 (9.2.1-8ubuntu1) ... Setting up g++ (4:9.2.1-3.1ubuntu1) ... Setting up build-essential (12.7ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17110845 arm64 eoan -c chroot:build-PACKAGEBUILD-17110845 --arch=arm64 --dist=eoan --nolog 'mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' Initiating build PACKAGEBUILD-17110845 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:12:37 UTC 2019 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-013.buildd +==============================================================================+ | mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (arm64) 17 Sep 2019 09:32 | +==============================================================================+ Package: mrtrix3 Version: 3.0~rc3+git135-g2b8e7d0c2-3 Source Version: 3.0~rc3+git135-g2b8e7d0c2-3 Distribution: eoan Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/mrtrix3-Jiw2l6/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' with '<>' I: NOTICE: Log filtering will replace 'build/mrtrix3-Jiw2l6' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17110845/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-zUGboh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-zUGboh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zUGboh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-zUGboh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zUGboh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-zUGboh/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (117 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-zUGboh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12734 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc Filtered Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc dpkg-deb: building package 'sbuild-build-depends-mrtrix3-dummy' in '/<>/resolver-bVUgFJ/apt_archive/sbuild-build-depends-mrtrix3-dummy.deb'. Ign:1 copy:/<>/resolver-bVUgFJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bVUgFJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bVUgFJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bVUgFJ/apt_archive ./ Sources [300 B] Get:5 copy:/<>/resolver-bVUgFJ/apt_archive ./ Packages [620 B] Fetched 3039 B in 0s (114 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mrtrix3 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1 libdbus-1-3 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave6 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsub-override-perl libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig ufraw-batch xdg-utils libasound2-plugins alsa-utils libatkmm-1.6-doc nas liblapack-doc libcairo2-doc libcairomm-1.0-doc cups-common libeigen3-doc libmpfrc++-dev libfftw3-doc freetype2-doc libglib2.0-doc libglibmm-2.4-doc libgtkmm-3.0-dev libiodbc2-dev default-libmysqlclient-dev graphicsmagick-dbg libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libgtk2.0-doc libgtkmm-2.4-doc libhdf5-doc libice-doc icu-doc jackd2 liblcms2-utils libmagickcore-6.q16-6-extra ncurses-doc libpango1.0-doc libqscintilla2-doc libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt5-image-formats-plugins qtwayland5 libicu55 qt4-qtconfig readline-doc librsvg2-bin lm-sensors libsigc++-2.0-doc libsm-doc libtool-doc gcj-jdk libwmf0.2-7-gtk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree texlive-fonts-recommended Recommended packages: curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm dbus libarchive-cpio-perl xdg-user-dirs gsfonts libgail-common libgtk2.0-bin krb5-locales libpng-tools publicsuffix libqt4-sql-mysql | libqt4-sql-odbc | libqt4-sql-psql | libqt4-sql-sqlite qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase qt-at-spi libsasl2-modules libltdl-dev libwacom-bin libwww-perl libxml-sax-expat-perl gnuplot-qt | gnuplot-x11 | gnuplot-nox libopenblas-base | libatlas3-base pstoedit epstool default-jre-headless octave-doc fonts-freefont-otf libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1 libdbus-1-3 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave6 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsub-override-perl libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-mrtrix3-dummy shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 434 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After this operation, 1115 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bVUgFJ/apt_archive ./ sbuild-build-depends-mrtrix3-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main arm64 libpython3.7-minimal arm64 3.7.4-4 [544 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main arm64 libexpat1 arm64 2.2.7-2 [61.2 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main arm64 python3.7-minimal arm64 3.7.4-4 [1713 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main arm64 python3-minimal arm64 3.7.3-1 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main arm64 mime-support all 3.63ubuntu1 [30.8 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main arm64 libpython3.7-stdlib arm64 3.7.4-4 [1711 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main arm64 python3.7 arm64 3.7.4-4 [294 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main arm64 libpython3-stdlib arm64 3.7.3-1 [6976 B] Get:11 http://ftpmaster.internal/ubuntu eoan/main arm64 python3 arm64 3.7.3-1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main arm64 groff-base arm64 1.22.4-3 [813 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main arm64 libpipeline1 arm64 1.5.1-2 [24.4 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main arm64 man-db arm64 2.8.7-3 [1096 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main arm64 libfftw3-double3 arm64 3.3.8-2 [379 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main arm64 libfreetype6 arm64 2.9.1-4 [310 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main arm64 ucf all 3.0038+nmu1 [51.6 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main arm64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main arm64 libfontconfig1 arm64 2.13.1-2ubuntu2 [111 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main arm64 libjpeg-turbo8 arm64 2.0.3-0ubuntu1 [101 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:27 http://ftpmaster.internal/ubuntu eoan/main arm64 liblcms2-2 arm64 2.9-4 [131 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main arm64 libglib2.0-0 arm64 2.62.0-1 [1178 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main arm64 liblqr-1-0 arm64 0.4.2-2.1 [22.5 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main arm64 libltdl7 arm64 2.4.6-11 [37.3 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main arm64 libtiff5 arm64 4.0.10+git190818-1 [150 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main arm64 libwebpmux3 arm64 0.6.1-2 [17.3 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main arm64 libxau6 arm64 1:1.0.9-0ubuntu1 [7356 B] Get:35 http://ftpmaster.internal/ubuntu eoan/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu1 [10.3 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb1 arm64 1.13.1-2 [43.6 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main arm64 libx11-data all 2:1.6.7-1 [113 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main arm64 libx11-6 arm64 2:1.6.7-1 [552 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main arm64 libxext6 arm64 2:1.3.4-0ubuntu1 [27.7 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main arm64 libicu63 arm64 63.2-2 [8146 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu3 [562 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main arm64 imagemagick-6-common all 8:6.9.10.23+dfsg-2.1ubuntu3 [61.1 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main arm64 libmagickcore-6.q16-6 arm64 8:6.9.10.23+dfsg-2.1ubuntu3 [1447 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main arm64 libmagickwand-6.q16-6 arm64 8:6.9.10.23+dfsg-2.1ubuntu3 [244 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpython2.7-minimal arm64 2.7.16-4 [335 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/universe arm64 python2.7-minimal arm64 2.7.16-4 [1233 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/universe arm64 python2-minimal arm64 2.7.16-1 [27.8 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/universe arm64 python-minimal arm64 2.7.16-1 [5996 B] Get:49 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpython2.7-stdlib arm64 2.7.16-4 [1866 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/universe arm64 python2.7 arm64 2.7.16-4 [244 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpython2-stdlib arm64 2.7.16-1 [7432 B] Get:52 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpython-stdlib arm64 2.7.16-1 [5828 B] Get:53 http://ftpmaster.internal/ubuntu eoan/universe arm64 python2 arm64 2.7.16-1 [26.5 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/universe arm64 python arm64 2.7.16-1 [7836 B] Get:55 http://ftpmaster.internal/ubuntu eoan/main arm64 tex-common all 6.12 [32.7 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main arm64 libmagic-mgc arm64 1:5.37-5 [209 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main arm64 libmagic1 arm64 1:5.37-5 [70.9 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main arm64 file arm64 1:5.37-5 [23.2 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main arm64 libgirepository-1.0-1 arm64 1.60.1-1 [74.8 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-glib-2.0 arm64 1.60.1-1 [133 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main arm64 libdbus-1-3 arm64 1.12.14-1ubuntu2 [170 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main arm64 libelf1 arm64 0.176-1.1 [43.6 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main arm64 libfribidi0 arm64 1.0.5-3.1 [26.3 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main arm64 libglib2.0-data all 2.62.0-1 [6748 B] Get:65 http://ftpmaster.internal/ubuntu eoan/main arm64 shared-mime-info arm64 1.10-1 [427 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main arm64 xkb-data all 2.26-2ubuntu1 [333 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main arm64 gettext-base arm64 0.19.8.1-9 [48.0 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-common all 2.4.99-1 [5216 B] Get:69 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm2 arm64 2.4.99-1 [31.5 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main arm64 libedit2 arm64 3.1-20190324-1 [82.7 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main arm64 libkrb5support0 arm64 1.17-6 [30.8 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main arm64 libk5crypto3 arm64 1.17-6 [80.5 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main arm64 libkeyutils1 arm64 1.6-6 [9960 B] Get:74 http://ftpmaster.internal/ubuntu eoan/main arm64 libkrb5-3 arm64 1.17-6 [312 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main arm64 libgssapi-krb5-2 arm64 1.17-6 [113 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main arm64 libpsl5 arm64 0.20.2-2 [49.9 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] Get:78 http://ftpmaster.internal/ubuntu eoan/main arm64 libgdk-pixbuf2.0-common all 2.39.2-3 [4868 B] Get:79 http://ftpmaster.internal/ubuntu eoan/main arm64 libgdk-pixbuf2.0-0 arm64 2.39.2-3 [156 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main arm64 gtk-update-icon-cache arm64 3.24.11-1ubuntu1 [28.7 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main arm64 libpixman-1-0 arm64 0.38.4-0ubuntu1 [130 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-render0 arm64 1.13.1-2 [14.5 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-shm0 arm64 1.13.1-2 [5628 B] Get:84 http://ftpmaster.internal/ubuntu eoan/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairo2 arm64 1.16.0-4 [539 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main arm64 fontconfig arm64 2.13.1-2ubuntu2 [171 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main arm64 libthai-data all 0.1.28-3 [134 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main arm64 libdatrie1 arm64 0.2.12-3 [17.9 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main arm64 libthai0 arm64 0.1.28-3 [16.8 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main arm64 libpango-1.0-0 arm64 1.42.4-7 [147 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main arm64 libgraphite2-3 arm64 1.3.13-8 [67.7 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main arm64 libharfbuzz0b arm64 2.6.1-3 [342 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main arm64 libpangoft2-1.0-0 arm64 1.42.4-7 [33.1 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main arm64 libpangocairo-1.0-0 arm64 1.42.4-7 [21.3 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main arm64 librsvg2-2 arm64 2.44.14-1 [1006 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main arm64 librsvg2-common arm64 2.44.14-1 [9044 B] Get:98 http://ftpmaster.internal/ubuntu eoan/main arm64 humanity-icon-theme all 0.6.15 [1250 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main arm64 ubuntu-mono all 19.04-0ubuntu1 [149 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main arm64 adwaita-icon-theme all 3.34.0-1ubuntu1 [3162 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main arm64 m4 arm64 1.4.18-2 [194 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main arm64 autoconf all 2.69-11 [322 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main arm64 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main arm64 autopoint all 0.19.8.1-9 [412 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main arm64 bc arm64 1.07.1-2build1 [84.1 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main arm64 libtool all 2.4.6-11 [194 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main arm64 dh-autoreconf all 19 [16.1 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main arm64 libarchive-zip-perl all 1.65-1 [83.6 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:112 http://ftpmaster.internal/ubuntu eoan/main arm64 libfile-stripnondeterminism-perl all 1.6.0-1 [16.2 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main arm64 dh-strip-nondeterminism all 1.6.0-1 [5208 B] Get:114 http://ftpmaster.internal/ubuntu eoan/main arm64 dwz arm64 0.13-1 [73.4 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main arm64 gettext arm64 0.19.8.1-9 [853 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main arm64 po-debconf all 1.0.21 [233 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main arm64 debhelper all 12.4ubuntu1 [910 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main arm64 libgfortran5 arm64 9.2.1-8ubuntu1 [333 kB] Get:120 http://ftpmaster.internal/ubuntu eoan/main arm64 libgfortran-9-dev arm64 9.2.1-8ubuntu1 [390 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main arm64 gfortran-9 arm64 9.2.1-8ubuntu1 [8944 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main arm64 gfortran arm64 4:9.2.1-3.1ubuntu1 [1364 B] Get:123 http://ftpmaster.internal/ubuntu eoan/main arm64 libatk1.0-data all 2.34.0-1 [2884 B] Get:124 http://ftpmaster.internal/ubuntu eoan/main arm64 libatk1.0-0 arm64 2.34.0-1 [42.6 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-atk-1.0 arm64 2.34.0-1 [18.2 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-freedesktop arm64 1.60.1-1 [9120 B] Get:127 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-gdkpixbuf-2.0 arm64 2.39.2-3 [8252 B] Get:128 http://ftpmaster.internal/ubuntu eoan/main arm64 libgtk2.0-common all 2.24.32-4ubuntu1 [126 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main arm64 libxft2 arm64 2.3.3-0ubuntu1 [35.9 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main arm64 libpangoxft-1.0-0 arm64 1.42.4-7 [16.5 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-pango-1.0 arm64 1.42.4-7 [23.0 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main arm64 libavahi-common-data arm64 0.7-4ubuntu5 [21.4 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main arm64 libavahi-common3 arm64 0.7-4ubuntu5 [20.5 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main arm64 libavahi-client3 arm64 0.7-4ubuntu5 [24.1 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main arm64 libcups2 arm64 2.2.12-2ubuntu1 [199 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcomposite1 arm64 1:0.4.5-0ubuntu1 [6900 B] Get:137 http://ftpmaster.internal/ubuntu eoan/main arm64 libxfixes3 arm64 1:5.0.3-1 [9844 B] Get:138 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcursor1 arm64 1:1.2.0-2 [19.2 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main arm64 libxdamage1 arm64 1:1.1.5-1 [6896 B] Get:140 http://ftpmaster.internal/ubuntu eoan/main arm64 libxi6 arm64 2:1.7.10-0ubuntu1 [28.2 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/main arm64 libxinerama1 arm64 2:1.1.4-2 [6872 B] Get:142 http://ftpmaster.internal/ubuntu eoan/main arm64 libxrandr2 arm64 2:1.5.2-0ubuntu1 [17.7 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/main arm64 libgtk2.0-0 arm64 2.24.32-4ubuntu1 [1645 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/universe arm64 gir1.2-gtk-2.0 arm64 2.24.32-4ubuntu1 [172 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/main arm64 gir1.2-harfbuzz-0.0 arm64 2.6.1-3 [26.4 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/universe arm64 hdf5-helpers arm64 1.10.4+repack-10 [13.9 kB] Get:147 http://ftpmaster.internal/ubuntu eoan/main arm64 icu-devtools arm64 63.2-2 [170 kB] Get:148 http://ftpmaster.internal/ubuntu eoan/universe arm64 imagemagick-6.q16 arm64 8:6.9.10.23+dfsg-2.1ubuntu3 [427 kB] Get:149 http://ftpmaster.internal/ubuntu eoan/universe arm64 imagemagick arm64 8:6.9.10.23+dfsg-2.1ubuntu3 [14.4 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/universe arm64 libaec0 arm64 1.0.4-1 [18.7 kB] Get:151 http://ftpmaster.internal/ubuntu eoan/main arm64 libsuitesparseconfig5 arm64 1:5.4.0+dfsg-1 [8992 B] Get:152 http://ftpmaster.internal/ubuntu eoan/main arm64 libamd2 arm64 1:5.4.0+dfsg-1 [16.7 kB] Get:153 http://ftpmaster.internal/ubuntu eoan/main arm64 libblas3 arm64 3.8.0-2 [89.8 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/main arm64 liblapack3 arm64 3.8.0-2 [1478 kB] Get:155 http://ftpmaster.internal/ubuntu eoan/universe arm64 libarpack2 arm64 3.7.0-2 [71.6 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-3build1 [39.4 kB] Get:157 http://ftpmaster.internal/ubuntu eoan/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-3build1 [150 kB] Get:158 http://ftpmaster.internal/ubuntu eoan/main arm64 libasound2-data all 1.1.9-0ubuntu1 [42.0 kB] Get:159 http://ftpmaster.internal/ubuntu eoan/main arm64 libasound2 arm64 1.1.9-0ubuntu1 [312 kB] Get:160 http://ftpmaster.internal/ubuntu eoan/main arm64 pkg-config arm64 0.29.1-0ubuntu3 [43.7 kB] Get:161 http://ftpmaster.internal/ubuntu eoan/main arm64 libffi-dev arm64 3.2.1-9 [155 kB] Get:162 http://ftpmaster.internal/ubuntu eoan/main arm64 libglib2.0-bin arm64 2.62.0-1 [68.6 kB] Get:163 http://ftpmaster.internal/ubuntu eoan/main arm64 python3-lib2to3 all 3.7.4-3 [75.6 kB] Get:164 http://ftpmaster.internal/ubuntu eoan/main arm64 python3-distutils all 3.7.4-3 [142 kB] Get:165 http://ftpmaster.internal/ubuntu eoan/main arm64 libglib2.0-dev-bin arm64 2.62.0-1 [104 kB] Get:166 http://ftpmaster.internal/ubuntu eoan/main arm64 uuid-dev arm64 2.34-0.1ubuntu2 [34.0 kB] Get:167 http://ftpmaster.internal/ubuntu eoan/main arm64 libblkid-dev arm64 2.34-0.1ubuntu2 [169 kB] Get:168 http://ftpmaster.internal/ubuntu eoan/main arm64 libmount-dev arm64 2.34-0.1ubuntu2 [181 kB] Get:169 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre16-3 arm64 2:8.39-12 [126 kB] Get:170 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre32-3 arm64 2:8.39-12 [119 kB] Get:171 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcrecpp0v5 arm64 2:8.39-12 [14.8 kB] Get:172 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre3-dev arm64 2:8.39-12 [468 kB] Get:173 http://ftpmaster.internal/ubuntu eoan/main arm64 libsepol1-dev arm64 2.9-2 [320 kB] Get:174 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre2-16-0 arm64 10.32-5 [144 kB] Get:175 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre2-32-0 arm64 10.32-5 [137 kB] Get:176 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre2-posix0 arm64 10.32-5 [5632 B] Get:177 http://ftpmaster.internal/ubuntu eoan/main arm64 libpcre2-dev arm64 10.32-5 [554 kB] Get:178 http://ftpmaster.internal/ubuntu eoan/main arm64 libselinux1-dev arm64 2.9-2 [152 kB] Get:179 http://ftpmaster.internal/ubuntu eoan/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1ubuntu3 [170 kB] Get:180 http://ftpmaster.internal/ubuntu eoan/main arm64 libglib2.0-dev arm64 2.62.0-1 [1501 kB] Get:181 http://ftpmaster.internal/ubuntu eoan/main arm64 libatk1.0-dev arm64 2.34.0-1 [92.3 kB] Get:182 http://ftpmaster.internal/ubuntu eoan/main arm64 libsigc++-2.0-0v5 arm64 2.10.1-2 [11.2 kB] Get:183 http://ftpmaster.internal/ubuntu eoan/main arm64 libglibmm-2.4-1v5 arm64 2.60.0-1 [499 kB] Get:184 http://ftpmaster.internal/ubuntu eoan/main arm64 libatkmm-1.6-1v5 arm64 2.28.0-2 [61.6 kB] Get:185 http://ftpmaster.internal/ubuntu eoan/main arm64 libsigc++-2.0-dev arm64 2.10.1-2 [64.5 kB] Get:186 http://ftpmaster.internal/ubuntu eoan/main arm64 libglibmm-2.4-dev arm64 2.60.0-1 [433 kB] Get:187 http://ftpmaster.internal/ubuntu eoan/main arm64 libatkmm-1.6-dev arm64 2.28.0-2 [33.1 kB] Get:188 http://ftpmaster.internal/ubuntu eoan/main arm64 x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:189 http://ftpmaster.internal/ubuntu eoan/main arm64 libice6 arm64 2:1.0.10-0ubuntu1 [37.7 kB] Get:190 http://ftpmaster.internal/ubuntu eoan/main arm64 libsm6 arm64 2:1.2.3-1 [15.1 kB] Get:191 http://ftpmaster.internal/ubuntu eoan/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:192 http://ftpmaster.internal/ubuntu eoan/universe arm64 libaudio2 arm64 1.9.4-6build1 [49.3 kB] Get:193 http://ftpmaster.internal/ubuntu eoan/main arm64 libblas-dev arm64 3.8.0-2 [92.2 kB] Get:194 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairo-gobject2 arm64 1.16.0-4 [16.8 kB] Get:195 http://ftpmaster.internal/ubuntu eoan/main arm64 liblzo2-2 arm64 2.10-0.1 [42.9 kB] Get:196 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairo-script-interpreter2 arm64 1.16.0-4 [50.8 kB] Get:197 http://ftpmaster.internal/ubuntu eoan/main arm64 libexpat1-dev arm64 2.2.7-2 [103 kB] Get:198 http://ftpmaster.internal/ubuntu eoan/main arm64 libpng-dev arm64 1.6.37-1 [172 kB] Get:199 http://ftpmaster.internal/ubuntu eoan/main arm64 libfreetype6-dev arm64 2.9.1-4 [477 kB] Get:200 http://ftpmaster.internal/ubuntu eoan/main arm64 libfontconfig1-dev arm64 2.13.1-2ubuntu2 [730 kB] Get:201 http://ftpmaster.internal/ubuntu eoan/main arm64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:202 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-dev all 2018.4-4 [251 kB] Get:203 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-core-dev all 2018.4-4 [2620 B] Get:204 http://ftpmaster.internal/ubuntu eoan/main arm64 libxau-dev arm64 1:1.0.9-0ubuntu1 [9728 B] Get:205 http://ftpmaster.internal/ubuntu eoan/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu1 [25.1 kB] Get:206 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-input-dev all 2018.4-4 [2620 B] Get:207 http://ftpmaster.internal/ubuntu eoan/main arm64 xtrans-dev all 1.3.5-1build1 [70.7 kB] Get:208 http://ftpmaster.internal/ubuntu eoan/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5376 B] Get:209 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb1-dev arm64 1.13.1-2 [80.1 kB] Get:210 http://ftpmaster.internal/ubuntu eoan/main arm64 libx11-dev arm64 2:1.6.7-1 [633 kB] Get:211 http://ftpmaster.internal/ubuntu eoan/main arm64 libxrender-dev arm64 1:0.9.10-1 [22.9 kB] Get:212 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-xext-dev all 2018.4-4 [2620 B] Get:213 http://ftpmaster.internal/ubuntu eoan/main arm64 libxext-dev arm64 2:1.3.4-0ubuntu1 [82.1 kB] Get:214 http://ftpmaster.internal/ubuntu eoan/main arm64 libice-dev arm64 2:1.0.10-0ubuntu1 [46.2 kB] Get:215 http://ftpmaster.internal/ubuntu eoan/main arm64 libsm-dev arm64 2:1.2.3-1 [16.4 kB] Get:216 http://ftpmaster.internal/ubuntu eoan/main arm64 libpixman-1-dev arm64 0.38.4-0ubuntu1 [147 kB] Get:217 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-render0-dev arm64 1.13.1-2 [18.7 kB] Get:218 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-shm0-dev arm64 1.13.1-2 [6820 B] Get:219 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairo2-dev arm64 1.16.0-4 [599 kB] Get:220 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairomm-1.0-1v5 arm64 1.12.2-4 [35.7 kB] Get:221 http://ftpmaster.internal/ubuntu eoan/main arm64 libcairomm-1.0-dev arm64 1.12.2-4 [578 kB] Get:222 http://ftpmaster.internal/ubuntu eoan/main arm64 libcamd2 arm64 1:5.4.0+dfsg-1 [17.8 kB] Get:223 http://ftpmaster.internal/ubuntu eoan/main arm64 libccolamd2 arm64 1:5.4.0+dfsg-1 [20.2 kB] Get:224 http://ftpmaster.internal/ubuntu eoan/main arm64 libcolamd2 arm64 1:5.4.0+dfsg-1 [15.3 kB] Get:225 http://ftpmaster.internal/ubuntu eoan/main arm64 libmetis5 arm64 5.1.0.dfsg-5 [140 kB] Get:226 http://ftpmaster.internal/ubuntu eoan/main arm64 libcholmod3 arm64 1:5.4.0+dfsg-1 [266 kB] Get:227 http://ftpmaster.internal/ubuntu eoan/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-3build1 [27.9 kB] Get:228 http://ftpmaster.internal/ubuntu eoan/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-3build1 [85.9 kB] Get:229 http://ftpmaster.internal/ubuntu eoan/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-3build1 [47.2 kB] Get:230 http://ftpmaster.internal/ubuntu eoan/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-3build1 [98.7 kB] Get:231 http://ftpmaster.internal/ubuntu eoan/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-3build1 [191 kB] Get:232 http://ftpmaster.internal/ubuntu eoan/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-3build1 [14.7 kB] Get:233 http://ftpmaster.internal/ubuntu eoan/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-3build1 [88.0 kB] Get:234 http://ftpmaster.internal/ubuntu eoan/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1build3 [14.8 kB] Get:235 http://ftpmaster.internal/ubuntu eoan/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1build3 [48.5 kB] Get:236 http://ftpmaster.internal/ubuntu eoan/main arm64 libldap-common all 2.4.48+dfsg-1ubuntu1 [17.3 kB] Get:237 http://ftpmaster.internal/ubuntu eoan/main arm64 libldap-2.4-2 arm64 2.4.48+dfsg-1ubuntu1 [146 kB] Get:238 http://ftpmaster.internal/ubuntu eoan/main arm64 libnghttp2-14 arm64 1.39.2-1 [75.4 kB] Get:239 http://ftpmaster.internal/ubuntu eoan/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:240 http://ftpmaster.internal/ubuntu eoan/main arm64 libssh-4 arm64 0.9.0-1 [186 kB] Get:241 http://ftpmaster.internal/ubuntu eoan/main arm64 libcurl3-gnutls arm64 7.65.3-1ubuntu3 [209 kB] Get:242 http://ftpmaster.internal/ubuntu eoan/main arm64 libcxsparse3 arm64 1:5.4.0+dfsg-1 [55.9 kB] Get:243 http://ftpmaster.internal/ubuntu eoan/universe arm64 libdouble-conversion3 arm64 3.1.5-2 [34.4 kB] Get:244 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-amdgpu1 arm64 2.4.99-1 [17.8 kB] Get:245 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-radeon1 arm64 2.4.99-1 [18.7 kB] Get:246 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-nouveau2 arm64 2.4.99-1 [15.6 kB] Get:247 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-freedreno1 arm64 2.4.99-1 [17.9 kB] Get:248 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-tegra0 arm64 2.4.99-1 [6192 B] Get:249 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-etnaviv1 arm64 2.4.99-1 [11.3 kB] Get:250 http://ftpmaster.internal/ubuntu eoan/main arm64 libdrm-dev arm64 2.4.99-1 [129 kB] Get:251 http://ftpmaster.internal/ubuntu eoan/main arm64 libwayland-server0 arm64 1.17.0-1 [29.2 kB] Get:252 http://ftpmaster.internal/ubuntu eoan/main arm64 libgbm1 arm64 19.1.6-1ubuntu1 [26.3 kB] Get:253 http://ftpmaster.internal/ubuntu eoan/main arm64 libglapi-mesa arm64 19.1.6-1ubuntu1 [33.5 kB] Get:254 http://ftpmaster.internal/ubuntu eoan/main arm64 libwayland-client0 arm64 1.17.0-1 [23.0 kB] Get:255 http://ftpmaster.internal/ubuntu eoan/main arm64 libx11-xcb1 arm64 2:1.6.7-1 [9248 B] Get:256 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-dri2-0 arm64 1.13.1-2 [6892 B] Get:257 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-dri3-0 arm64 1.13.1-2 [6568 B] Get:258 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-present0 arm64 1.13.1-2 [5516 B] Get:259 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-sync1 arm64 1.13.1-2 [8816 B] Get:260 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-xfixes0 arm64 1.13.1-2 [9216 B] Get:261 http://ftpmaster.internal/ubuntu eoan/main arm64 libxshmfence1 arm64 1.3-1 [4868 B] Get:262 http://ftpmaster.internal/ubuntu eoan/main arm64 libegl-mesa0 arm64 19.1.6-1ubuntu1 [86.5 kB] Get:263 http://ftpmaster.internal/ubuntu eoan/main arm64 libfftw3-long3 arm64 3.3.8-2 [521 kB] Get:264 http://ftpmaster.internal/ubuntu eoan/main arm64 libfftw3-single3 arm64 3.3.8-2 [625 kB] Get:265 http://ftpmaster.internal/ubuntu eoan/main arm64 libfftw3-bin arm64 3.3.8-2 [28.5 kB] Get:266 http://ftpmaster.internal/ubuntu eoan/main arm64 libfftw3-dev arm64 3.3.8-2 [1436 kB] Get:267 http://ftpmaster.internal/ubuntu eoan/main arm64 libogg0 arm64 1.3.4-0ubuntu1 [22.9 kB] Get:268 http://ftpmaster.internal/ubuntu eoan/main arm64 libflac8 arm64 1.3.3-1 [86.3 kB] Get:269 http://ftpmaster.internal/ubuntu eoan/universe arm64 libfltk1.3 arm64 1.3.4-9ubuntu1 [509 kB] Get:270 http://ftpmaster.internal/ubuntu eoan/main arm64 libglvnd0 arm64 1.1.1-0ubuntu1 [41.5 kB] Get:271 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-glx0 arm64 1.13.1-2 [21.9 kB] Get:272 http://ftpmaster.internal/ubuntu eoan/main arm64 libxxf86vm1 arm64 1:1.1.4-1build1 [9908 B] Get:273 http://ftpmaster.internal/ubuntu eoan/main arm64 libllvm8 arm64 1:8.0.1-3build1 [11.2 MB] Get:274 http://ftpmaster.internal/ubuntu eoan/main arm64 libsensors-config all 1:3.5.0-3ubuntu1 [6168 B] Get:275 http://ftpmaster.internal/ubuntu eoan/main arm64 libsensors5 arm64 1:3.5.0-3ubuntu1 [26.3 kB] Get:276 http://ftpmaster.internal/ubuntu eoan/main arm64 libgl1-mesa-dri arm64 19.1.6-1ubuntu1 [5510 kB] Get:277 http://ftpmaster.internal/ubuntu eoan/main arm64 libglx-mesa0 arm64 19.1.6-1ubuntu1 [139 kB] Get:278 http://ftpmaster.internal/ubuntu eoan/main arm64 libglx0 arm64 1.1.1-0ubuntu1 [27.3 kB] Get:279 http://ftpmaster.internal/ubuntu eoan/main arm64 libgl1 arm64 1.1.1-0ubuntu1 [91.0 kB] Get:280 http://ftpmaster.internal/ubuntu eoan/universe arm64 libfltk-gl1.3 arm64 1.3.4-9ubuntu1 [34.9 kB] Get:281 http://ftpmaster.internal/ubuntu eoan/main arm64 libfribidi-dev arm64 1.0.5-3.1 [62.6 kB] Get:282 http://ftpmaster.internal/ubuntu eoan/main arm64 libgdk-pixbuf2.0-bin arm64 2.39.2-3 [13.9 kB] Get:283 http://ftpmaster.internal/ubuntu eoan/main arm64 libgdk-pixbuf2.0-dev arm64 2.39.2-3 [43.0 kB] Get:284 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgl2ps1.4 arm64 1.4.0+dfsg1-2 [32.7 kB] Get:285 http://ftpmaster.internal/ubuntu eoan/main arm64 libgles1 arm64 1.1.1-0ubuntu1 [12.5 kB] Get:286 http://ftpmaster.internal/ubuntu eoan/universe arm64 libglpk40 arm64 4.65-2 [295 kB] Get:287 http://ftpmaster.internal/ubuntu eoan/main arm64 libglu1-mesa arm64 9.0.1-0ubuntu1 [146 kB] Get:288 http://ftpmaster.internal/ubuntu eoan/main arm64 mesa-common-dev arm64 19.1.6-1ubuntu1 [651 kB] Get:289 http://ftpmaster.internal/ubuntu eoan/main arm64 libglvnd-core-dev arm64 1.1.1-0ubuntu1 [12.6 kB] Get:290 http://ftpmaster.internal/ubuntu eoan/main arm64 libegl1 arm64 1.1.1-0ubuntu1 [31.0 kB] Get:291 http://ftpmaster.internal/ubuntu eoan/main arm64 libgles2 arm64 1.1.1-0ubuntu1 [18.0 kB] Get:292 http://ftpmaster.internal/ubuntu eoan/main arm64 libopengl0 arm64 1.1.1-0ubuntu1 [32.6 kB] Get:293 http://ftpmaster.internal/ubuntu eoan/main arm64 libglvnd-dev arm64 1.1.1-0ubuntu1 [3396 B] Get:294 http://ftpmaster.internal/ubuntu eoan/main arm64 libx11-xcb-dev arm64 2:1.6.7-1 [9772 B] Get:295 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-dri3-dev arm64 1.13.1-2 [7576 B] Get:296 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-randr0 arm64 1.13.1-2 [16.2 kB] Get:297 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-randr0-dev arm64 1.13.1-2 [20.9 kB] Get:298 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-shape0 arm64 1.13.1-2 [5928 B] Get:299 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-shape0-dev arm64 1.13.1-2 [7296 B] Get:300 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-xfixes0-dev arm64 1.13.1-2 [12.0 kB] Get:301 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-sync-dev arm64 1.13.1-2 [10.9 kB] Get:302 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-present-dev arm64 1.13.1-2 [7044 B] Get:303 http://ftpmaster.internal/ubuntu eoan/main arm64 libxshmfence-dev arm64 1.3-1 [3544 B] Get:304 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-dri2-0-dev arm64 1.13.1-2 [8700 B] Get:305 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcb-glx0-dev arm64 1.13.1-2 [28.5 kB] Get:306 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:307 http://ftpmaster.internal/ubuntu eoan/main arm64 libxfixes-dev arm64 1:5.0.3-1 [10.4 kB] Get:308 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:309 http://ftpmaster.internal/ubuntu eoan/main arm64 libxdamage-dev arm64 1:1.1.5-1 [5260 B] Get:310 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:311 http://ftpmaster.internal/ubuntu eoan/main arm64 libxxf86vm-dev arm64 1:1.1.4-1build1 [13.3 kB] Get:312 http://ftpmaster.internal/ubuntu eoan/main arm64 libgl1-mesa-dev arm64 19.1.6-1ubuntu1 [6036 B] Get:313 http://ftpmaster.internal/ubuntu eoan/main arm64 libglu1-mesa-dev arm64 9.0.1-0ubuntu1 [185 kB] Get:314 http://ftpmaster.internal/ubuntu eoan/main arm64 libwmf0.2-7 arm64 0.2.8.4-14 [136 kB] Get:315 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgraphicsmagick-q16-3 arm64 1.4+really1.3.33-1 [997 kB] Get:316 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgraphicsmagick++-q16-12 arm64 1.4+really1.3.33-1 [95.2 kB] Get:317 http://ftpmaster.internal/ubuntu eoan/main arm64 libgraphite2-dev arm64 1.3.13-8 [14.7 kB] Get:318 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgslcblas0 arm64 2.5+dfsg-6 [52.4 kB] Get:319 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgsl23 arm64 2.5+dfsg-6 [737 kB] Get:320 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgsl-dev arm64 2.5+dfsg-6 [939 kB] Get:321 http://ftpmaster.internal/ubuntu eoan/main arm64 libharfbuzz-icu0 arm64 2.6.1-3 [5440 B] Get:322 http://ftpmaster.internal/ubuntu eoan/main arm64 libharfbuzz-gobject0 arm64 2.6.1-3 [19.3 kB] Get:323 http://ftpmaster.internal/ubuntu eoan/main arm64 libicu-dev arm64 63.2-2 [9055 kB] Get:324 http://ftpmaster.internal/ubuntu eoan/main arm64 libharfbuzz-dev arm64 2.6.1-3 [482 kB] Get:325 http://ftpmaster.internal/ubuntu eoan/main arm64 libxft-dev arm64 2.3.3-0ubuntu1 [47.4 kB] Get:326 http://ftpmaster.internal/ubuntu eoan/main arm64 pango1.0-tools arm64 1.42.4-7 [23.3 kB] Get:327 http://ftpmaster.internal/ubuntu eoan/main arm64 libpango1.0-dev arm64 1.42.4-7 [118 kB] Get:328 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-xinerama-dev all 2018.4-4 [2628 B] Get:329 http://ftpmaster.internal/ubuntu eoan/main arm64 libxinerama-dev arm64 2:1.1.4-2 [7916 B] Get:330 http://ftpmaster.internal/ubuntu eoan/main arm64 libxi-dev arm64 2:1.7.10-0ubuntu1 [185 kB] Get:331 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-randr-dev all 2018.4-4 [2620 B] Get:332 http://ftpmaster.internal/ubuntu eoan/main arm64 libxrandr-dev arm64 2:1.5.2-0ubuntu1 [24.6 kB] Get:333 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcursor-dev arm64 1:1.2.0-2 [26.7 kB] Get:334 http://ftpmaster.internal/ubuntu eoan/main arm64 x11proto-composite-dev all 1:2018.4-4 [2620 B] Get:335 http://ftpmaster.internal/ubuntu eoan/main arm64 libxcomposite-dev arm64 1:0.4.5-0ubuntu1 [9232 B] Get:336 http://ftpmaster.internal/ubuntu eoan/main arm64 libxml2-utils arm64 2.9.4+dfsg1-7ubuntu3 [34.5 kB] Get:337 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgtk2.0-dev arm64 2.24.32-4ubuntu1 [763 kB] Get:338 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpangox-1.0-0 arm64 0.0.2-5build1 [40.8 kB] Get:339 http://ftpmaster.internal/ubuntu eoan/main arm64 libxmu6 arm64 2:1.1.3-0ubuntu1 [42.9 kB] Get:340 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgtkglext1 arm64 1.2.0-9 [61.8 kB] Get:341 http://ftpmaster.internal/ubuntu eoan/universe arm64 libpangox-1.0-dev arm64 0.0.2-5build1 [42.7 kB] Get:342 http://ftpmaster.internal/ubuntu eoan/main arm64 libxt-dev arm64 1:1.1.5-1 [374 kB] Get:343 http://ftpmaster.internal/ubuntu eoan/main arm64 libxmu-headers all 2:1.1.3-0ubuntu1 [54.2 kB] Get:344 http://ftpmaster.internal/ubuntu eoan/main arm64 libxmu-dev arm64 2:1.1.3-0ubuntu1 [48.5 kB] Get:345 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgtkglext1-dev arm64 1.2.0-9 [353 kB] Get:346 http://ftpmaster.internal/ubuntu eoan/main arm64 libpangomm-1.4-1v5 arm64 2.42.0-2 [41.9 kB] Get:347 http://ftpmaster.internal/ubuntu eoan/main arm64 libgtkmm-2.4-1v5 arm64 1:2.24.5-4 [659 kB] Get:348 http://ftpmaster.internal/ubuntu eoan/main arm64 libpangomm-1.4-dev arm64 2.42.0-2 [49.7 kB] Get:349 http://ftpmaster.internal/ubuntu eoan/universe arm64 libgtkmm-2.4-dev arm64 1:2.24.5-4 [500 kB] Get:350 http://ftpmaster.internal/ubuntu eoan/main arm64 libgudev-1.0-0 arm64 1:233-0ubuntu1 [13.1 kB] Get:351 http://ftpmaster.internal/ubuntu eoan/universe arm64 libsz2 arm64 1.0.4-1 [5100 B] Get:352 http://ftpmaster.internal/ubuntu eoan/universe arm64 libhdf5-103 arm64 1.10.4+repack-10 [1145 kB] Get:353 http://ftpmaster.internal/ubuntu eoan/universe arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [108 kB] Get:354 http://ftpmaster.internal/ubuntu eoan/main arm64 libjpeg-turbo8-dev arm64 2.0.3-0ubuntu1 [215 kB] Get:355 http://ftpmaster.internal/ubuntu eoan/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:356 http://ftpmaster.internal/ubuntu eoan/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:357 http://ftpmaster.internal/ubuntu eoan/universe arm64 libaec-dev arm64 1.0.4-1 [16.5 kB] Get:358 http://ftpmaster.internal/ubuntu eoan/universe arm64 libhdf5-dev arm64 1.10.4+repack-10 [2658 kB] Get:359 http://ftpmaster.internal/ubuntu eoan/main arm64 libevdev2 arm64 1.8.0+dfsg-2 [29.5 kB] Get:360 http://ftpmaster.internal/ubuntu eoan/main arm64 libwacom-common all 0.32-1 [38.5 kB] Get:361 http://ftpmaster.internal/ubuntu eoan/main arm64 libwacom2 arm64 0.32-1 [16.9 kB] Get:362 http://ftpmaster.internal/ubuntu eoan/main arm64 libinput-bin arm64 1.14.1-1 [14.2 kB] Get:363 http://ftpmaster.internal/ubuntu eoan/main arm64 libmtdev1 arm64 1.1.5-1ubuntu3 [12.9 kB] Get:364 http://ftpmaster.internal/ubuntu eoan/main arm64 libinput10 arm64 1.14.1-1 [99.0 kB] Get:365 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kB] Get:431 http://ftpmaster.internal/ubuntu eoan/universe arm64 libeigen3-dev all 3.3.7-1 [814 kB] Get:432 http://ftpmaster.internal/ubuntu eoan/universe arm64 octave-common all 4.4.1-6build1 [4021 kB] Get:433 http://ftpmaster.internal/ubuntu eoan/universe arm64 octave arm64 4.4.1-6build1 [1669 kB] Get:434 http://ftpmaster.internal/ubuntu eoan/universe arm64 liboctave-dev arm64 4.4.1-6build1 [456 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 156 MB in 10s (15.2 MB/s) Selecting previously unselected package libpython3.7-minimal:arm64. 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Setting up libxshmfence1:arm64 (1.3-1) ... Setting up libqt5dbus5:arm64 (5.12.4+dfsg-4build1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libasound2:arm64 (1.1.9-0ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:arm64 (2.6.1-3) ... Setting up libthai-data (0.1.28-3) ... Setting up libgirepository-1.0-1:arm64 (1.60.1-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libgtk2.0-common (2.24.32-4ubuntu1) ... Setting up libcxsparse3:arm64 (1:5.4.0+dfsg-1) ... Setting up libatk1.0-0:arm64 (2.34.0-1) ... Setting up libkrb5-3:arm64 (1.17-6) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libsamplerate0:arm64 (0.1.9-2) ... Setting up libwebpmux3:arm64 (0.6.1-2) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libdrm-common (2.4.99-1) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libevdev2:arm64 (1.8.0+dfsg-2) ... Setting up libicu-dev:arm64 (63.2-2) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libsuitesparseconfig5:arm64 (1:5.4.0+dfsg-1) ... Setting up libgudev-1.0-0:arm64 (1:233-0ubuntu1) ... Setting up qtchooser (66-2) ... Setting up libblas-dev:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.0.4-1) ... Setting up libvorbisenc2:arm64 (1.3.6-2) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-7ubuntu3) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:arm64 (0.8.4-1) ... Setting up matlab-support-dev (0.0.21) ... Setting up libwayland-client0:arm64 (1.17.0-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libglibmm-2.4-1v5:arm64 (2.60.0-1) ... Setting up libblkid-dev:arm64 (2.34-0.1ubuntu2) ... Setting up libamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libice6:arm64 (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.3-0ubuntu1) ... Setting up libmng2:arm64 (2.0.3+dfsg-3) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu1) ... Setting up libpython3.7-stdlib:arm64 (3.7.4-4) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libharfbuzz-icu0:arm64 (2.6.1-3) ... Setting up libxcb-xfixes0:arm64 (1.13.1-2) ... Setting up libxau-dev:arm64 (1:1.0.9-0ubuntu1) ... Setting up libcolamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libpcre2-dev:arm64 (10.32-5) ... Setting up python2.7 (2.7.16-4) ... Setting up libxcb-xinput0:arm64 (1.13.1-2) ... Setting up libice-dev:arm64 (2:1.0.10-0ubuntu1) ... Setting up libtool (2.4.6-11) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libxshmfence-dev:arm64 (1.3-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libselinux1-dev:arm64 (2.9-2) ... Setting up libpcre3-dev:arm64 (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up x11proto-randr-dev (2018.4-4) ... Setting up libfribidi-dev:arm64 (1.0.5-3.1) ... Setting up libxcb-glx0:arm64 (1.13.1-2) ... Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libedit2:arm64 (3.1-20190324-1) ... Setting up libpng-dev:arm64 (1.6.37-1) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1build1) ... Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up libarpack2:arm64 (3.7.0-2) ... Setting up libxcb-shape0:arm64 (1.13.1-2) ... Setting up libavahi-common3:arm64 (0.7-4ubuntu5) ... Setting up libgfortran-9-dev:arm64 (9.2.1-8ubuntu1) ... Setting up libglib2.0-bin (2.62.0-1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:arm64 (0.3.9-1build1) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1) ... Setting up libharfbuzz-gobject0:arm64 (2.6.1-3) ... Setting up libqrupdate1:arm64 (1.1.2-3) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up x11proto-xinerama-dev (2018.4-4) ... Setting up python2 (2.7.16-1) ... Setting up libqt5network5:arm64 (5.12.4+dfsg-4build1) ... Setting up libxcb-util1:arm64 (0.4.0-0ubuntu3) ... Setting up libfreetype6-dev:arm64 (2.9.1-4) ... Setting up libxcb-xkb1:arm64 (1.13.1-2) ... Setting up libxcb-image0:arm64 (0.4.0-1build1) ... Setting up libxcb-present0:arm64 (1.13.1-2) ... Setting up libqt5sql5:arm64 (5.12.4+dfsg-4build1) ... Setting up tex-common (6.12) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libsigc++-2.0-dev:arm64 (2.10.1-2) ... Setting up libthai0:arm64 (0.1.28-3) ... Setting up libcamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu1) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libxcb-xinerama0:arm64 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up x11proto-composite-dev (1:2018.4-4) ... Setting up libglpk40:arm64 (4.65-2) ... Setting up libxcb-sync1:arm64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:arm64 (0.8.4-1) ... Setting up liblapack-dev:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:arm64 (1.17-6) ... Setting up x11proto-input-dev (2018.4-4) ... Setting up libcroco3:arm64 (0.6.13-1) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqtcore4:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up gir1.2-glib-2.0:arm64 (1.60.1-1) ... Setting up libssh-4:arm64 (0.9.0-1) ... Setting up autoconf (2.69-11) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:arm64 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libjack-jackd2-0:arm64 (1.9.12~dfsg-2build1) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:arm64 (2.4.99-1) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libccolamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libxcb-randr0:arm64 (1.13.1-2) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libtiff5:arm64 (4.0.10+git190818-1) ... Setting up libfontconfig1:arm64 (2.13.1-2ubuntu2) ... Setting up libsndfile1:arm64 (1.0.28-6) ... Setting up libatkmm-1.6-1v5:arm64 (2.28.0-2) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libxml2-utils (2.9.4+dfsg1-7ubuntu3) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:arm64 (0.32-1) ... Setting up libxcomposite1:arm64 (1:0.4.5-0ubuntu1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up libfftw3-dev:arm64 (3.3.8-2) ... Setting up libavahi-client3:arm64 (0.7-4ubuntu5) ... Setting up libmount-dev:arm64 (2.34-0.1ubuntu2) ... Setting up libcholmod3:arm64 (1:5.4.0+dfsg-1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.99-1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libllvm8:arm64 (1:8.0.1-3build1) ... Setting up libxcb-dri3-0:arm64 (1.13.1-2) ... Setting up python3.7 (3.7.4-4) ... Setting up libportaudio2:arm64 (19.6.0-1) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:arm64 (2.4.99-1) ... Setting up gettext (0.19.8.1-9) ... Setting up gir1.2-freedesktop:arm64 (1.60.1-1) ... Setting up libfontconfig1-dev:arm64 (2.13.1-2ubuntu2) ... Setting up libxdamage1:arm64 (1:1.1.5-1) ... Setting up libdrm-etnaviv1:arm64 (2.4.99-1) ... Setting up libxcb1-dev:arm64 (1.13.1-2) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-8ubuntu1) ... Setting up libgbm1:arm64 (19.1.6-1ubuntu1) ... Setting up libwmf0.2-7:arm64 (0.2.8.4-14) ... Setting up gir1.2-atk-1.0:arm64 (2.34.0-1) ... Setting up libsm-dev:arm64 (2:1.2.3-1) ... Setting up libdrm-radeon1:arm64 (2.4.99-1) ... Setting up libhx509-5-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libpango-1.0-0:arm64 (1.42.4-7) ... Setting up libgl1-mesa-dri:arm64 (19.1.6-1ubuntu1) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up libx11-dev:arm64 (2:1.6.7-1) ... Setting up libxext6:arm64 (2:1.3.4-0ubuntu1) ... Setting up libxcb-dri3-dev:arm64 (1.13.1-2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gir1.2-harfbuzz-0.0:arm64 (2.6.1-3) ... Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.16.0-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1build1) ... Setting up libinput-bin (1.14.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt4-sql:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libcairomm-1.0-1v5:arm64 (1.12.2-4) ... Setting up libxcb-shm0-dev:arm64 (1.13.1-2) ... Setting up libmagickcore-6.q16-6:arm64 (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libqt4-xml:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libegl-mesa0:arm64 (19.1.6-1ubuntu1) ... Setting up libxcb-dri2-0-dev:arm64 (1.13.1-2) ... Setting up libumfpack5:arm64 (1:5.4.0+dfsg-1) ... Setting up libqt4-test:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:arm64 (2.39.2-3) ... Setting up libxinerama1:arm64 (2:1.1.4-2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libxrandr2:arm64 (2:1.5.2-0ubuntu1) ... Setting up libdrm-freedreno1:arm64 (2.4.99-1) ... Setting up libgraphicsmagick-q16-3 (1.4+really1.3.33-1) ... Setting up libxcb-render0-dev:arm64 (1.13.1-2) ... Setting up libxcb-glx0-dev:arm64 (1.13.1-2) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up libaudio2:arm64 (1.9.4-6build1) ... Setting up libdrm-tegra0:arm64 (2.4.99-1) ... Setting up texinfo (6.6.0.dfsg.1-2build1) ... Setting up libxcb-shape0-dev:arm64 (1.13.1-2) ... Setting up libxext-dev:arm64 (2:1.3.4-0ubuntu1) ... Setting up libcups2:arm64 (2.2.12-2ubuntu1) ... Setting up libgdk-pixbuf2.0-bin (2.39.2-3) ... Setting up libegl1:arm64 (1.1.1-0ubuntu1) ... Setting up libmagickwand-6.q16-6:arm64 (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libxcb-sync-dev:arm64 (1.13.1-2) ... Setting up libgraphicsmagick++-q16-12 (1.4+really1.3.33-1) ... Setting up libcairo-gobject2:arm64 (1.16.0-4) ... Setting up libxcb-xfixes0-dev:arm64 (1.13.1-2) ... Setting up libpangoft2-1.0-0:arm64 (1.42.4-7) ... Setting up libqtdbus4:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up python3-lib2to3 (3.7.4-3) ... Setting up libxrender-dev:arm64 (1:0.9.10-1) ... Setting up libpangocairo-1.0-0:arm64 (1.42.4-7) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up python3-distutils (3.7.4-3) ... Setting up libcairo-script-interpreter2:arm64 (1.16.0-4) ... Setting up libglib2.0-dev-bin (2.62.0-1) ... Setting up libinput10:arm64 (1.14.1-1) ... Setting up gtk-update-icon-cache (3.24.11-1ubuntu1) ... Setting up libx11-xcb-dev:arm64 (2:1.6.7-1) ... Setting up libdrm-dev:arm64 (2.4.99-1) ... Setting up libxft2:arm64 (2.3.3-0ubuntu1) ... Setting up libxmu-headers (2:1.1.3-0ubuntu1) ... Setting up libxmu6:arm64 (2:1.1.3-0ubuntu1) ... Setting up libglx-mesa0:arm64 (19.1.6-1ubuntu1) ... Setting up libpangox-1.0-0:arm64 (0.0.2-5build1) ... Setting up libpangoxft-1.0-0:arm64 (1.42.4-7) ... Setting up libxi6:arm64 (2:1.7.10-0ubuntu1) ... Setting up libqt4-network:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libglx0:arm64 (1.1.1-0ubuntu1) ... Setting up gir1.2-gdkpixbuf-2.0:arm64 (2.39.2-3) ... Setting up qt4-linguist-tools (4:4.8.7+dfsg-7ubuntu3) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:arm64 (1:1.1.4-1build1) ... Setting up libxcursor1:arm64 (1:1.2.0-2) ... Setting up pango1.0-tools (1.42.4-7) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up librsvg2-2:arm64 (2.44.14-1) ... Setting up libxfixes-dev:arm64 (1:5.0.3-1) ... Setting up gir1.2-pango-1.0:arm64 (1.42.4-7) ... Setting up libxrandr-dev:arm64 (2:1.5.2-0ubuntu1) ... Setting up libgl1:arm64 (1.1.1-0ubuntu1) ... Setting up libglib2.0-dev:arm64 (2.62.0-1) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libxcb-randr0-dev:arm64 (1.13.1-2) ... Setting up libxt-dev:arm64 (1:1.1.5-1) ... Setting up libqt4-xmlpatterns:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libglibmm-2.4-dev:arm64 (2.60.0-1) ... Setting up libxcb-present-dev:arm64 (1.13.1-2) ... Setting up libxinerama-dev:arm64 (2:1.1.4-2) ... Setting up librsvg2-common:arm64 (2.44.14-1) ... Setting up libpangomm-1.4-1v5:arm64 (2.42.0-2) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu3) ... Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1ubuntu3) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libqt4-script:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up mesa-common-dev:arm64 (19.1.6-1ubuntu1) ... Setting up libcairo2-dev:arm64 (1.16.0-4) ... Setting up libglu1-mesa:arm64 (9.0.1-0ubuntu1) ... Setting up libxi-dev:arm64 (2:1.7.10-0ubuntu1) ... Setting up libatk1.0-dev:arm64 (2.34.0-1) ... Setting up libxft-dev:arm64 (2.3.3-0ubuntu1) ... Setting up libxdamage-dev:arm64 (1:1.1.5-1) ... Setting up libharfbuzz-dev:arm64 (2.6.1-3) ... Setting up libxcomposite-dev:arm64 (1:0.4.5-0ubuntu1) ... Setting up libxcursor-dev:arm64 (1:1.2.0-2) ... Setting up libfltk1.3:arm64 (1.3.4-9ubuntu1) ... Setting up libfltk-gl1.3:arm64 (1.3.4-9ubuntu1) ... Setting up libqt5gui5:arm64 (5.12.4+dfsg-4build1) ... Setting up libldap-2.4-2:arm64 (2.4.48+dfsg-1ubuntu1) ... Setting up libglvnd-dev:arm64 (1.1.1-0ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.65.3-1ubuntu3) ... Setting up libqt5widgets5:arm64 (5.12.4+dfsg-4build1) ... Setting up libxmu-dev:arm64 (2:1.1.3-0ubuntu1) ... Setting up libqt5help5:arm64 (5.12.4-1) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up libgdk-pixbuf2.0-dev:arm64 (2.39.2-3) ... Setting up liboctave6:arm64 (4.4.1-6build1) ... Setting up libqt5printsupport5:arm64 (5.12.4+dfsg-4build1) ... Setting up libcairomm-1.0-dev:arm64 (1.12.2-4) ... Setting up libpango1.0-dev:arm64 (1.42.4-7) ... Setting up libqt4-dbus:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up imagemagick (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libqscintilla2-qt5-13 (2.10.4+dfsg-1build2) ... Setting up libatkmm-1.6-dev:arm64 (2.28.0-2) ... Setting up libgl1-mesa-dev:arm64 (19.1.6-1ubuntu1) ... Setting up libpangomm-1.4-dev:arm64 (2.42.0-2) ... Setting up libpangox-1.0-dev (0.0.2-5build1) ... Setting up libglu1-mesa-dev:arm64 (9.0.1-0ubuntu1) ... Setting up octave (4.4.1-6build1) ... Setting up liboctave-dev (4.4.1-6build1) ... Setting up adwaita-icon-theme (3.34.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libqt4-declarative:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libgtk2.0-0:arm64 (2.24.32-4ubuntu1) ... Setting up libgtkglext1:arm64 (1.2.0-9) ... Setting up dh-autoreconf (19) ... Setting up humanity-icon-theme (0.6.15) ... Setting up gir1.2-gtk-2.0:arm64 (2.24.32-4ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libgtkmm-2.4-1v5:arm64 (1:2.24.5-4) ... Setting up libgtk2.0-dev:arm64 (2.24.32-4ubuntu1) ... Setting up libgtkmm-2.4-dev:arm64 (1:2.24.5-4) ... Setting up libqtgui4:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libgtkglext1-dev:arm64 (1.2.0-9) ... Setting up ubuntu-mono (19.04-0ubuntu1) ... Setting up libqt4-help:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up debhelper (12.4ubuntu1) ... Setting up libqt4-designer:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-qt3support:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-scripttools:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-svg:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-opengl:arm64 (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu3) ... Setting up sbuild-build-depends-mrtrix3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu1) ... Processing triggers for systemd (241-7ubuntu1) ... Processing triggers for libgdk-pixbuf2.0-0:arm64 (2.39.2-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-161-generic arm64 (aarch64) Toolchain package versions: binutils_2.32.51.20190905-0ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-8ubuntu1 gcc-9_9.2.1-8ubuntu1 libc6-dev_2.30-0ubuntu1 libstdc++-9-dev_9.2.1-8ubuntu1 libstdc++6_9.2.1-8ubuntu1 linux-libc-dev_5.3.0-10.11 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 adwaita-icon-theme_3.34.0-1ubuntu1 apt_1.9.3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu6 base-passwd_3.5.46 bash_5.0-4ubuntu1 bc_1.07.1-2build1 binutils_2.32.51.20190905-0ubuntu1 binutils-aarch64-linux-gnu_2.32.51.20190905-0ubuntu1 binutils-common_2.32.51.20190905-0ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 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python3-minimal_3.7.3-1 python3.7_3.7.4-4 python3.7-minimal_3.7.4-4 qdbus_4:4.8.7+dfsg-7ubuntu3 qt4-linguist-tools_4:4.8.7+dfsg-7ubuntu3 qt4-qmake_4:4.8.7+dfsg-7ubuntu3 qtchooser_66-2 qtcore4-l10n_4:4.8.7+dfsg-7ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrtrix3-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_241-7ubuntu1 systemd-sysv_241-7ubuntu1 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 tex-common_6.12 texinfo_6.6.0.dfsg.1-2build1 tzdata_2019b-2 ubuntu-keyring_2018.09.18.1 ubuntu-mono_19.04-0ubuntu1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu2 uuid-dev_2.34-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 x11proto-composite-dev_1:2018.4-4 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-input-dev_2018.4-4 x11proto-randr-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 x11proto-xinerama-dev_2018.4-4 xkb-data_2.26-2ubuntu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1build1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jan 23 02:48:32 2019 UTC gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc dpkg-source: info: extracting mrtrix3 in mrtrix3-3.0~rc3+git135-g2b8e7d0c2 dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying up_blend_python dpkg-source: info: applying changeset_7fb509cf35d5862f073faaa7e136e987486960d9.diff dpkg-source: info: applying changeset_1c1d3304791bd029bca744ff6634bfa4824f6938.diff dpkg-source: info: applying deb_run_tests dpkg-source: info: applying debian_build_cfg Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17110845 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17110845 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17110845 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build clean find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory make[1]: [debian/rules:69: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Ubuntu 9.2.1-8ubuntu1) 9.2.1 20190909 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.3.7 Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: not found - TIFF support disabled Checking for FFTW library: fftw-3.3.8 Checking for OpenMP support: ok Checking for Qt moc: moc (version 4.8.7) Checking for Qt qmake: qmake (version 4.8.7) Checking for Qt rcc: rcc (version 4.8.7) Checking for Qt: 4.8.7 writing configuration to file './config': ok make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build -verbose active config is default reading configuration from "config"... getting git version in folder "."... not found getting git version in folder "."... not found version file "./core/version.cpp" is out of date - updating getting git version in folder "."... not found version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/tsfvalidate bin/sh2power bin/tsfsmooth bin/tsfinfo bin/voxel2mesh bin/mrresize bin/5tt2gmwmi bin/tckresample bin/tckedit bin/dwi2adc bin/shview bin/labelconvert bin/mredit bin/tensor2metric bin/dirorder bin/tckstats bin/label2mesh bin/fixelcorrespondence bin/fixelreorient bin/tckinfo bin/dcmedit bin/mrdump bin/fixel2sh bin/mtnormalise bin/connectomestats bin/warpcorrect bin/5ttedit bin/fixelcfestats bin/fixel2tsf bin/voxel2fixel bin/warp2metric bin/label2colour bin/meshfilter bin/meshconvert bin/mrthreshold bin/mrfilter bin/tck2connectome bin/transformcompose bin/peaks2amp bin/tck2fixel bin/dwinormalise bin/tsfdivide bin/tsfmult bin/warpconvert bin/shconv bin/mrcrop bin/tckdfc bin/tcksift bin/dirgen bin/tckgen bin/sh2peaks bin/5tt2vis bin/maskfilter bin/dirflip bin/5ttcheck bin/mrmetric bin/warpinit bin/mrhistogram bin/tckconvert bin/mesh2voxel bin/mrstats bin/transformconvert bin/sh2response bin/mrtransform bin/amp2response bin/mrcat bin/fixelcrop bin/connectome2tck bin/tcksample bin/mrconvert bin/mrview bin/fod2fixel bin/transformcalc bin/dirsplit bin/dwi2mask bin/tsfthreshold bin/tckmap bin/vectorstats bin/shbasis bin/sh2amp bin/tcktransform bin/mrcheckerboardmask bin/dwiextract bin/dcminfo bin/tcksift2 bin/dwi2tensor bin/fixel2voxel bin/mrdegibbs bin/mrclusterstats bin/tckglobal bin/mrmath bin/warpinvert bin/afdconnectivity bin/maskdump bin/amp2sh bin/fod2dec bin/dirmerge bin/mrhistmatch bin/fixelconvert bin/dirstat bin/mrregister bin/mrcalc bin/mrinfo bin/mrpad bin/dwi2fod bin/dwidenoise bin/mraverageheader TODO list contains 505 items launching 4 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o ( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 1/505) [CC] tmp/cmd/labelconvert.o ( 4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp ( 3/505) [CC] tmp/src/dwi/directions/file.o ( 5/505) [CC] tmp/cmd/mrcalc.o ( 6/505) [CC] tmp/core/version.o ( 7/505) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o: In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gug++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o i/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 8/505) [CC] tmp/cmd/mrdump.o ( 9/505) [CC] tmp/core/file/dicom/tree.o ( 10/505) [CC] tmp/src/registration/transform/rigid.o ( 11/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp ( 12/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o ( 13/505) [CC] tmp/cmd/dirstat.o ( 14/505) [CC] tmp/src/gui/shapes/cylinder.o ( 15/505) [CC] tmp/cmd/mrconvert.o ( 16/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o ( 17/505) [CC] tmp/cmd/dwiextract.o ( 18/505) [CC] tmp/src/dwi/directions/set.o ( 19/505) [CC] tmp/core/file/dicom/dict.o ( 20/505) [CC] tmp/core/image_io/default.o ( 21/505) [CC] tmp/core/app.o ( 22/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o ( 23/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o ( 24/505) [CC] tmp/cmd/tsfmult.o ( 25/505) [CC] tmp/cmd/warpinvert.o ( 26/505) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/toolg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o /fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 27/505) [CC] tmp/src/surface/algo/mesh2image.o ( 28/505) [CC] tmp/src/connectome/lut.o ( 29/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp ( 30/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o ( 31/505) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/gui.cpp -o tmp/src/gui/gui.o MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 32/505) [CC] tmp/src/gui/mrview/mode/volume.o ( 33/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp ( 34/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp ( 35/505) [CC] tmp/src/gui/mrview/tool/odf/item.o ( 36/505) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 37/505) [CC] tmp/cmd/mrcheckerboardmask.o ( 38/505) [CC] tmp/src/gui/mrview/tool/base.o ( 39/505) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o at4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 40/505) [CC] tmp/core/phase_encoding.o ( 41/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp ( 42/505) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In fg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o ile included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 43/505) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/vog++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o lume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 44/505) [CC] tmp/core/image_io/ram.o ( 45/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o ( 46/505) [CC] tmp/cmd/tckmap.o ( 47/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp ( 48/505) [CC] tmp/src/registration/transform/initialiser.o ( 49/505) [CC] tmp/core/math/SH.o ( 50/505) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/color_button.cpp -o tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o , from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 51/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o ( 52/505) [CC] tmp/src/gui/color_button.o ( 53/505) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 54/505) [CC] tmp/src/dwi/tractography/roi.o ( 55/505) [CC] tmp/cmd/dirgen.o ( 56/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o ( 57/505) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrvig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o ew/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 58/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o ( 59/505) [CC] tmp/cmd/mrclusterstats.o ( 60/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp ( 61/505) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecatedg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 62/505) [CC] tmp/src/surface/filter/vertex_transform.o ( 63/505) [CC] tmp/core/formats/nifti2_gz.o ( 64/505) [CC] tmp/src/stats/tfce.o ( 65/505) [CC] tmp/cmd/mrhistogram.o ( 66/505) [CC] tmp/cmd/mrview.o ( 67/505) [CC] tmp/cmd/sh2amp.o ( 68/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:210:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:255:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:366:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/mrview/displayable.h:21, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/gui.h:19, from cmd/mrview.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 69/505) [CC] tmp/core/formats/dicom.o ( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o ( 71/505) [CC] tmp/cmd/maskdump.o ( 72/505) [CC] tmp/cmd/meshfilter.o ( 73/505) [CC] tmp/src/gui/dialog/report_exception.o ( 74/505) [CC] tmp/src/dwi/tractography/editing/editing.o ( 75/505) [CC] tmp/cmd/5ttcheck.o ( 76/505) [RCC] tmp/src/gui/shview/icons.cpp ( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o ( 78/505) [CC] tmp/src/gui/dialog/dialog.o ( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o ( 80/505) [CC] tmp/cmd/mrdegibbs.o ( 81/505) [CC] tmp/src/surface/filter/smooth.o ( 82/505) [CC] tmp/src/dwi/tractography/rng.o ( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o ( 84/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp ( 85/505) [CC] tmp/src/gui/mrview/displayable.o ( 86/505) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const matg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o 4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 87/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmmoc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permstack.cpp -o tmp/src/stats/permstack.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o p/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 88/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp ( 89/505) [CC] tmp/src/dwi/tractography/connectome/extract.o ( 90/505) [CC] tmp/src/gui/mrview/colourmap_button.o ( 91/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o ( 92/505) [CC] tmp/src/dwi/directions/predefined.o ( 93/505) [CC] tmp/cmd/mrstats.o ( 94/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o ( 95/505) [CC] tmp/src/dwi/tractography/editing/receiver.o ( 96/505) [CC] tmp/core/image_io/mosaic.o ( 97/505) [CC] tmp/src/dwi/tractography/seeding/basic.o ( 98/505) [CC] tmp/src/gui/opengl/lighting_moc.o ( 99/505) [CC] tmp/cmd/tckinfo.o (100/505) [CC] tmp/src/stats/permstack.o (101/505) [CC] tmp/cmd/dirsplit.o (102/505) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (103/505) [CC] tmp/core/file/dicom/series.o (104/505) [CC] tmp/cmd/tckglobal.o (105/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (106/505) [CC] tmp/core/formats/nifti1.o (107/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (108/505) [CC] tmp/src/gui/shapes/sphere.o (109/505) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (110/505) [CC] tmp/cmd/dwi2adc.o (111/505) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: becag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o use MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (112/505) [CC] tmp/src/dwi/gradient.o (113/505) [CC] tmp/cmd/mrfilter.o (114/505) [CC] tmp/cmd/fixelcfestats.o (115/505) [CC] tmp/src/dwi/tractography/ACT/act.o (116/505) [CC] tmp/core/file/dicom/element.o (117/505) [CC] tmp/src/dwi/tractography/editing/worker.o (118/505) [CC] tmp/cmd/tsfthreshold.o (119/505) [CC] tmp/src/gui/mrview/combo_box_error.o (120/505) [CC] tmp/cmd/meshconvert.o (121/505) [CC] tmp/src/registration/nonlinear.o (122/505) [CC] tmp/cmd/amp2response.o (123/505) [CC] tmp/core/file/name_parser.o (124/505) [CC] tmp/cmd/tck2connectome.o (125/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (126/505) [CC] tmp/src/dwi/tractography/seeding/list.o (127/505) [CC] tmp/cmd/maskfilter.o (128/505) [CC] tmp/core/stats.o (129/505) [CC] tmp/src/surface/filter/base.o (130/505) [CC] tmp/src/gui/mrview/gui_image.o (131/505) [CC] tmp/src/gui/mrview/window.o (132/505) [CC] tmp/cmd/mrresize.o (133/505) [CC] tmp/cmd/tsfvalidate.o (134/505) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrvg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o iew/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (135/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:210:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:255:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:366:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:15g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o 93:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/window.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (136/505) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, fromg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (137/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (138/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o (139/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o (140/505) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included fg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o rom src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (141/505) [CC] tmp/core/file/dicom/patient.o (142/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrviewg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o /mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (143/505) [CC] tmp/core/formats/mrtrix.o (144/505) [CC] tmp/cmd/tckdfc.o (145/505) [CC] tmp/cmd/5tt2gmwmi.o (146/505) [CC] tmp/cmd/warpinit.o (147/505) [CC] tmp/src/gui/dialog/image_properties.o (148/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (149/505) [CC] tmp/cmd/tckresample.o (150/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (151/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (152/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (153/505) [CC] tmp/core/file/dicom/select_cmdline.o (154/505) [CC] tmp/cmd/tcksift.o (155/505) [CC] tmp/src/gui/shview/render_window.o (156/505) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformatig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o on.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (157/505) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, frg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o om src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (158/505) [CC] tmp/src/surface/scalar.o (159/505) [CC] tmp/src/gui/dialog/progress.o (160/505) [CC] tmp/core/file/nifti2_utils.o (161/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp (162/505) [CC] tmp/cmd/mrhistmatch.o (163/505) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o: In file included from /usr/include/string.h:494, from /usr/include/c++/9/cstring:42, from ./core/app.h:19, from ./core/header.h:22, from core/file/nifti2_utils.cpp:16: In function char* strncpy(char*, const char*, size_t), inlined from void MR::File::NIfTI2::write(nifti_2_header&, const MR::Header&, bool) at core/file/nifti2_utils.cpp:267:17: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:34: warning: char* __builtin_strncpy(char*, const char*, long unsigned int) output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (164/505) [CC] tmp/cmd/5tt2vis.o (165/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (166/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (167/505) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/bitset.cpp -o tmp/core/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o sizeof(m)); } | ^~~~ (168/505) [CC] tmp/cmd/mrcrop.o (169/505) [CC] tmp/core/bitset.o (170/505) [CC] tmp/cmd/connectomestats.o (171/505) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (172/505) [CC] tmp/core/signal_handler.o (173/505) [CC] tmp/src/gui/mrview/tool/overlay.o (174/505) [CC] tmp/src/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o dwi/tractography/ACT/gmwmi.o (175/505) [CC] tmp/src/dwi/directions/mask.o (176/505) [CC] tmp/src/gui/shview/icons.o (177/505) [CC] tmp/src/stats/permtest.o (178/505) [CC] tmp/cmd/dirflip.o (179/505) [CC] tmp/cmd/mrregister.o (180/505) [CC] tmp/cmd/tsfsmooth.o (181/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19,g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (182/505) [CC] tmp/src/dwi/tractography/GT/gt.o (183/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o (184/505) [CC] tmp/src/registration/transform/initialiser_helpers.o (185/505) [CC] tmp/cmd/tcksift2.o (186/505) [CC] tmp/cmd/tcktransform.o (187/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o (188/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o ERROR: (192/505) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o failed with output cc1plus: out of memory allocating 8388584 bytes after a total of 32419840 bytes ERROR: (184/505) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o failed with output virtual memory exhausted: Cannot allocate memory from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (189/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (190/505) [CC] tmp/src/dwi/tractography/mapping/writer.o (191/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (192/505) [CC] tmp/cmd/mtnormalise.o (193/505) [CC] tmp/core/file/config.o (194/505) [CC] tmp/src/dwi/tractography/GT/particle.o (195/505) [CC] tmp/src/dwi/tractography/weights.o (196/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1 make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' make: *** [debian/rules:33: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190917-1033 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 2441652 Build-Time: 3505 Distribution: eoan Fail-Stage: build Host Architecture: arm64 Install-Time: 131 Job: mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc Machine Architecture: arm64 Package: mrtrix3 Package-Time: 3641 Source-Version: 3.0~rc3+git135-g2b8e7d0c2-3 Space: 2441652 Status: attempted Version: 3.0~rc3+git135-g2b8e7d0c2-3 -------------------------------------------------------------------------------- Finished at 20190917-1033 Build needed 01:00:41, 2441652k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=arm64 PACKAGEBUILD-17110845 Scanning for processes to kill in build PACKAGEBUILD-17110845