https://launchpad.net/ubuntu/+archive/test-rebuild-20190614-gcc9/+build/17110847 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-052 4.4.0-151-generic #178-Ubuntu SMP Tue Jun 11 08:30:22 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 Jun 17:29:27 ntpdate[1884]: adjust time server 10.211.37.1 offset -0.005879 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 --image-type chroot /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-17110847 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 Starting target for build PACKAGEBUILD-17110847 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan main' 'deb http://ftpmaster.internal/ubuntu eoan main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-17110847 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 Adding trusted keys to build-PACKAGEBUILD-17110847 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 Updating target for build PACKAGEBUILD-17110847 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan InRelease [20.7 kB] Get:2 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan InRelease [15.4 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 Packages [35.7 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main Translation-en [12.9 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main i386 Packages [14.9 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main Translation-en [4628 B] Get:8 http://ftpmaster.internal/ubuntu eoan/main i386 Packages [963 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main Translation-en [503 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/restricted i386 Packages [12.0 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/restricted Translation-en [5528 B] Get:12 http://ftpmaster.internal/ubuntu eoan/universe i386 Packages [8955 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5283 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/multiverse i386 Packages [145 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/multiverse Translation-en [112 kB] Fetched 16.3 MB in 4s (4330 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libgcc-9-dev libisl21 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libitm1 libjson-c3 libkmod2 liblz4-1 liblzma5 libmount1 libmpfr6 libmpx2 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 143 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 gcc-9-base i386 9.1.0-4ubuntu1 [18.0 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main i386 libc6-dev i386 2.29-0ubuntu2 [2323 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgcc1 i386 1:9.1.0-4ubuntu1 [48.1 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libstdc++6 i386 9.1.0-4ubuntu1 [549 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgomp1 i386 9.1.0-4ubuntu1 [95.0 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libitm1 i386 9.1.0-4ubuntu1 [30.9 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libatomic1 i386 9.1.0-4ubuntu1 [9784 B] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libasan5 i386 9.1.0-4ubuntu1 [409 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libubsan1 i386 9.1.0-4ubuntu1 [149 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main i386 libc-dev-bin i386 2.29-0ubuntu2 [71.4 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main i386 linux-libc-dev i386 5.0.0-17.18 [1061 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libmpx2 i386 8.3.0-14ubuntu1 [13.0 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libquadmath0 i386 9.1.0-4ubuntu1 [230 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main i386 libc6 i386 2.29-0ubuntu2 [2538 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 g++-8 i386 8.3.0-14ubuntu1 [10.1 MB] Get:16 http://ftpmaster.internal/ubuntu eoan/main i386 libc-bin i386 2.29-0ubuntu2 [592 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main i386 base-files i386 10.2ubuntu3 [60.5 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main i386 debianutils i386 4.8.6.1 [85.9 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main i386 bash i386 5.0-4ubuntu1 [670 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main i386 bsdutils i386 1:2.33.1-0.1ubuntu2 [66.0 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main i386 coreutils i386 8.30-3ubuntu1 [1315 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main i386 lsb-base all 10.2019051400ubuntu1 [12.4 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main i386 tar i386 1.30+dfsg-6 [265 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main i386 dpkg i386 1.19.6ubuntu1 [1154 kB] Get:25 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 gcc-8 i386 8.3.0-14ubuntu1 [9859 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main i386 libperl5.28 i386 5.28.1-6 [3447 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main i386 perl i386 5.28.1-6 [204 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main i386 perl-base i386 5.28.1-6 [1604 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main i386 perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:30 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libstdc++-8-dev i386 8.3.0-14ubuntu1 [4716 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main i386 libdb5.3 i386 5.3.28+dfsg1-0.6ubuntu1 [738 kB] Get:32 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgcc-8-dev i386 8.3.0-14ubuntu1 [2312 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main i386 libgdbm6 i386 1.18.1-4 [31.8 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main i386 libgdbm-compat4 i386 1.18.1-4 [6704 B] Get:35 http://ftpmaster.internal/ubuntu eoan/main i386 zlib1g i386 1:1.2.11.dfsg-1ubuntu2 [55.9 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main i386 debconf all 1.5.72 [122 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main i386 dash i386 0.5.10.2-5 [90.9 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main i386 diffutils i386 1:3.7-3 [209 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main i386 findutils i386 4.6.0+git+20190209-2 [343 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main i386 grep i386 3.3-1 [155 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main i386 gzip i386 1.10-0ubuntu1 [95.5 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main i386 libsmartcols1 i386 2.33.1-0.1ubuntu2 [98.6 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main i386 libuuid1 i386 2.33.1-0.1ubuntu2 [21.9 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main i386 libblkid1 i386 2.33.1-0.1ubuntu2 [147 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main i386 libfdisk1 i386 2.33.1-0.1ubuntu2 [190 kB] Get:46 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libcc1-0 i386 9.1.0-4ubuntu1 [50.0 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre2-8-0 i386 10.32-5 [182 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main i386 libselinux1 i386 2.9-1 [74.4 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main i386 libmount1 i386 2.33.1-0.1ubuntu2 [158 kB] Get:50 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 binutils-i686-linux-gnu i386 2.32.51.20190614-0ubuntu1 [2062 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main i386 libncurses6 i386 6.1+20181013-2ubuntu2 [108 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main i386 libtinfo6 i386 6.1+20181013-2ubuntu2 [84.8 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main i386 libncursesw6 i386 6.1+20181013-2ubuntu2 [142 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main i386 fdisk i386 2.33.1-0.1ubuntu2 [127 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main i386 login i386 1:4.5-1.1ubuntu2 [266 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main i386 util-linux i386 2.33.1-0.1ubuntu2 [1026 kB] Get:57 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libbinutils i386 2.32.51.20190614-0ubuntu1 [507 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main i386 ncurses-bin i386 6.1+20181013-2ubuntu2 [166 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main i386 sed i386 4.7-1 [193 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main i386 libdebconfclient0 i386 0.249ubuntu1 [6448 B] Get:61 http://ftpmaster.internal/ubuntu eoan/main i386 base-passwd i386 3.5.46 [47.9 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main i386 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main i386 ncurses-base all 6.1+20181013-2ubuntu2 [17.9 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main i386 sysvinit-utils i386 2.93-8ubuntu1 [20.2 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main i386 libnettle6 i386 3.4.1-1 [128 kB] Get:66 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 binutils i386 2.32.51.20190614-0ubuntu1 [3392 B] Get:67 http://ftpmaster.internal/ubuntu eoan/main i386 libhogweed4 i386 3.4.1-1 [142 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main i386 libp11-kit0 i386 0.23.15-2 [185 kB] Get:69 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 binutils-common i386 2.32.51.20190614-0ubuntu1 [202 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main i386 libunistring2 i386 0.9.10-1ubuntu2 [376 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main i386 libgnutls30 i386 3.6.7-4ubuntu1 [782 kB] Get:72 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 cpp-8 i386 8.3.0-14ubuntu1 [8976 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main i386 liblz4-1 i386 1.8.3-1ubuntu1 [61.2 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main i386 liblzma5 i386 5.2.4-1 [99.7 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main i386 systemd-sysv i386 240-6ubuntu9 [9380 B] Get:76 http://ftpmaster.internal/ubuntu eoan/main i386 libacl1 i386 2.2.53-4 [19.9 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main i386 libapparmor1 i386 2.13.2-9ubuntu7 [36.1 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main i386 libaudit-common all 1:2.8.4-3ubuntu1 [4200 B] Get:79 http://ftpmaster.internal/ubuntu eoan/main i386 libcap-ng0 i386 0.7.9-2 [11.1 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main i386 libaudit1 i386 1:2.8.4-3ubuntu1 [40.2 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main i386 libcap2 i386 1:2.25-2 [13.7 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main i386 libargon2-1 i386 0~20171227-0.2 [23.5 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main i386 libudev1 i386 240-6ubuntu9 [68.3 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main i386 libdevmapper1.02.1 i386 2:1.02.155-2ubuntu4 [125 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main i386 libjson-c3 i386 0.12.1+ds-2 [24.0 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main i386 libssl1.1 i386 1.1.1c-1ubuntu3 [1310 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main i386 libcryptsetup12 i386 2:2.1.0-5ubuntu1 [167 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main i386 libgpg-error0 i386 1.36-1 [62.2 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main i386 libidn11 i386 1.33-2.2ubuntu2 [46.9 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main i386 libkmod2 i386 26-1ubuntu1 [48.8 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main i386 libpam0g i386 1.3.1-5ubuntu1 [58.6 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main i386 libseccomp2 i386 2.4.1-0ubuntu0.19.10.3 [36.6 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main i386 mount i386 2.33.1-0.1ubuntu2 [117 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main i386 libsepol1 i386 2.9-1 [277 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main i386 libsemanage-common all 2.9-1 [9916 B] Get:96 http://ftpmaster.internal/ubuntu eoan/main i386 libsemanage1 i386 2.9-1 [94.5 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main i386 libpam-modules-bin i386 1.3.1-5ubuntu1 [39.1 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main i386 libpam-modules i386 1.3.1-5ubuntu1 [262 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main i386 passwd i386 1:4.5-1.1ubuntu2 [817 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main i386 adduser all 3.118ubuntu1 [163 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main i386 systemd i386 240-6ubuntu9 [3474 kB] Get:102 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 gcc-8-base i386 8.3.0-14ubuntu1 [18.2 kB] Get:103 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 cpp-9 i386 9.1.0-4ubuntu1 [8997 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main i386 libsystemd0 i386 240-6ubuntu9 [264 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main i386 libzstd1 i386 1.3.8+dfsg-3 [225 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main i386 libapt-pkg5.0 i386 1.8.2+19.10 [897 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main i386 libgcrypt20 i386 1.8.4-5ubuntu1 [401 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main i386 gpgv i386 2.2.12-1ubuntu3 [217 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main i386 apt i386 1.8.2+19.10 [1302 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main i386 libext2fs2 i386 1.45.1-1ubuntu1 [212 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main i386 e2fsprogs i386 1.45.1-1ubuntu1 [570 kB] Get:112 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main i386 g++ i386 4:9.1.0-1ubuntu4 [1572 B] Get:113 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main i386 gcc i386 4:9.1.0-1ubuntu4 [5228 B] Get:114 http://ftpmaster.internal/ubuntu eoan/main i386 init i386 1.56+nmu1 [6076 B] Get:115 http://ftpmaster.internal/ubuntu eoan/main i386 libattr1 i386 1:2.4.48-4 [12.8 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main i386 libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre3 i386 2:8.39-12 [229 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main i386 libisl21 i386 0.21-1 [657 kB] Get:119 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main i386 cpp i386 4:9.1.0-1ubuntu4 [42.5 kB] Get:120 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgcc-9-dev i386 9.1.0-4ubuntu1 [2360 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main i386 libmpfr6 i386 4.0.2-1 [246 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main i386 libcom-err2 i386 1.45.1-1ubuntu1 [10.6 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main i386 libprocps7 i386 2:3.3.15-2ubuntu2 [33.8 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main i386 libss2 i386 1.45.1-1ubuntu1 [11.7 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main i386 procps i386 2:3.3.15-2ubuntu2 [229 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main i386 openssl i386 1.1.1c-1ubuntu3 [631 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main i386 ca-certificates all 20190110 [146 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main i386 dmsetup i386 2:1.02.155-2ubuntu4 [71.2 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main i386 readline-common all 8.0-1 [53.4 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main i386 libreadline8 i386 8.0-1 [133 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main i386 libslang2 i386 2.3.2-3 [426 kB] Get:132 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 gcc-9 i386 9.1.0-4ubuntu1 [9784 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main i386 libsqlite3-0 i386 3.27.2-3 [570 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main i386 tzdata all 2019a-1 [187 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main i386 xz-utils i386 5.2.4-1 [87.0 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main i386 libpng16-16 i386 1.6.37-1~exp4 [186 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main i386 multiarch-support i386 2.29-0ubuntu2 [6916 B] Get:138 http://ftpmaster.internal/ubuntu eoan/main i386 advancecomp i386 2.1-2.1 [212 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main i386 dpkg-dev all 1.19.6ubuntu1 [675 kB] Get:140 http://ftpmaster.internal/ubuntu eoan/main i386 libdpkg-perl all 1.19.6ubuntu1 [230 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/main i386 build-essential i386 12.6ubuntu1 [4660 B] Get:142 http://ftpmaster.internal/ubuntu eoan/main i386 e2fslibs i386 1.45.1-1ubuntu1 [2716 B] Get:143 http://ftpmaster.internal/ubuntu eoan/main i386 libassuan0 i386 2.5.3-1 [37.6 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/main i386 pinentry-curses i386 1.1.0-2 [37.8 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/main i386 gpg i386 2.2.12-1ubuntu3 [514 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/main i386 gpgconf i386 2.2.12-1ubuntu3 [130 kB] Get:147 http://ftpmaster.internal/ubuntu eoan/main i386 gpg-agent i386 2.2.12-1ubuntu3 [249 kB] Get:148 http://ftpmaster.internal/ubuntu eoan/main i386 libcomerr2 i386 1.45.1-1ubuntu1 [2704 B] Get:149 http://ftpmaster.internal/ubuntu eoan/main i386 optipng i386 0.7.7-1 [88.1 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main i386 pkgbinarymangler all 144 [55.2 kB] Get:151 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libstdc++-9-dev i386 9.1.0-4ubuntu1 [1747 kB] 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Current default time zone: 'Etc/UTC' Local time is now: Sat Jun 22 17:30:04 UTC 2019. Universal Time is now: Sat Jun 22 17:30:04 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:i386 (9.1.0-4ubuntu1) ... Setting up libslang2:i386 (2.3.2-3) ... Setting up multiarch-support (2.29-0ubuntu2) ... Setting up libmpfr6:i386 (4.0.2-1) ... Setting up libncurses6:i386 (6.1+20181013-2ubuntu2) ... Setting up xz-utils (5.2.4-1) ... Setting up libquadmath0:i386 (9.1.0-4ubuntu1) ... Setting up libpng16-16:i386 (1.6.37-1~exp4) ... Setting up libatomic1:i386 (9.1.0-4ubuntu1) ... Setting up libss2:i386 (1.45.1-1ubuntu1) ... Setting up gcc-8-base:i386 (8.3.0-14ubuntu1) ... Setting up libmpx2:i386 (8.3.0-14ubuntu1) ... Setting up libubsan1:i386 (9.1.0-4ubuntu1) ... Setting up advancecomp (2.1-2.1) ... Setting up dmsetup (2:1.02.155-2ubuntu4) ... Setting up libcomerr2:i386 (1.45.1-1ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu2) ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up cpp-9 (9.1.0-4ubuntu1) ... Setting up libbinutils:i386 (2.32.51.20190614-0ubuntu1) ... Setting up cpp-8 (8.3.0-14ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu2) ... Setting up openssl (1.1.1c-1ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.0-1) ... Setting up libcc1-0:i386 (9.1.0-4ubuntu1) ... Setting up libitm1:i386 (9.1.0-4ubuntu1) ... Setting up libgdbm6:i386 (1.18.1-4) ... Setting up pinentry-curses (1.1.0-2) ... Setting up binutils-i686-linux-gnu (2.32.51.20190614-0ubuntu1) ... Setting up libreadline8:i386 (8.0-1) ... Setting up e2fsprogs (1.45.1-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up binutils (2.32.51.20190614-0ubuntu1) ... Setting up libgcc-9-dev:i386 (9.1.0-4ubuntu1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:i386 (1.18.1-4) ... Setting up libgcc-8-dev:i386 (8.3.0-14ubuntu1) ... Setting up libperl5.28:i386 (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:i386 (2.29-0ubuntu2) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:i386 (8.3.0-14ubuntu1) ... Setting up gcc-9 (9.1.0-4ubuntu1) ... Setting up gcc-8 (8.3.0-14ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:i386 (9.1.0-4ubuntu1) ... Setting up pkgbinarymangler (144) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up perl (5.28.1-6) ... Setting up g++-9 (9.1.0-4ubuntu1) ... Setting up libdpkg-perl (1.19.6ubuntu1) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-14ubuntu1) ... Setting up dpkg-dev (1.19.6ubuntu1) ... Setting up build-essential (12.6ubuntu1) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17110847 i386 eoan -c chroot:build-PACKAGEBUILD-17110847 --arch=i386 --dist=eoan --nolog 'mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' Initiating build PACKAGEBUILD-17110847 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-151-generic #178-Ubuntu SMP Tue Jun 11 08:30:22 UTC 2019 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-052.buildd +==============================================================================+ | mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (i386) 22 Jun 2019 17:30 | +==============================================================================+ Package: mrtrix3 Version: 3.0~rc3+git135-g2b8e7d0c2-3 Source Version: 3.0~rc3+git135-g2b8e7d0c2-3 Distribution: eoan Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/mrtrix3-fWkNH5/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' with '<>' I: NOTICE: Log filtering will replace 'build/mrtrix3-fWkNH5' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17110847/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-srCBUg/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-srCBUg/apt_archive ./ InRelease Get:2 copy:/<>/resolver-srCBUg/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-srCBUg/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-srCBUg/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-srCBUg/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (258 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-srCBUg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13878 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc Filtered Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc dpkg-deb: building package 'sbuild-build-depends-mrtrix3-dummy' in '/<>/resolver-MFUJfN/apt_archive/sbuild-build-depends-mrtrix3-dummy.deb'. Ign:1 copy:/<>/resolver-MFUJfN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-MFUJfN/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-MFUJfN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-MFUJfN/apt_archive ./ Sources [300 B] Get:5 copy:/<>/resolver-MFUJfN/apt_archive ./ Packages [618 B] Fetched 3037 B in 0s (277 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mrtrix3 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libisl19 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave6 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig ufraw-batch xdg-utils libasound2-plugins alsa-utils libatkmm-1.6-doc nas liblapack-doc libcairo2-doc libcairomm-1.0-doc cups-common libeigen3-doc libmpfrc++-dev libfftw3-doc libglib2.0-doc libglibmm-2.4-doc libgtkmm-3.0-dev libiodbc2-dev default-libmysqlclient-dev graphicsmagick-dbg libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libgtk2.0-doc libgtkmm-2.4-doc libhdf5-doc libice-doc icu-doc jackd2 liblcms2-utils libmagickcore-6.q16-6-extra ncurses-doc libpango1.0-doc pciutils libqscintilla2-doc libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt5-image-formats-plugins qtwayland5 libicu55 qt4-qtconfig readline-doc librsvg2-bin lm-sensors libsigc++-2.0-doc libsm-doc libtool-doc gcj-jdk libwmf0.2-7-gtk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree texlive-fonts-recommended Recommended packages: curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm dbus libarchive-cpio-perl freetype2-doc xdg-user-dirs gsfonts libgail-common libgtk2.0-bin krb5-locales libpng-tools publicsuffix libqt4-sql-mysql | libqt4-sql-odbc | libqt4-sql-psql | libqt4-sql-sqlite qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase qt-at-spi libsasl2-modules libltdl-dev libwacom-bin libwww-perl libxml-sax-expat-perl gnuplot-qt | gnuplot-x11 | gnuplot-nox libopenblas-base | libatlas3-base pstoedit epstool default-jre-headless octave-doc fonts-freefont-otf libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm8 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave6 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-mrtrix3-dummy shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 433 newly installed, 0 to remove and 0 not upgraded. Need to get 181 MB of archives. After this operation, 920 MB of additional disk space will be used. Get:1 copy:/<>/resolver-MFUJfN/apt_archive ./ sbuild-build-depends-mrtrix3-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main i386 libpython3.7-minimal i386 3.7.4~rc1-1 [547 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgfortran5 i386 9.1.0-4ubuntu1 [600 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 libgfortran-9-dev i386 9.1.0-4ubuntu1 [664 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main i386 libexpat1 i386 2.2.6-1 [84.8 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main i386 python3.7-minimal i386 3.7.4~rc1-1 [1699 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu eoan/main i386 gfortran-9 i386 9.1.0-4ubuntu1 [9611 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main i386 python3-minimal i386 3.7.3-1 [23.4 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main i386 mime-support all 3.62ubuntu1 [30.6 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main i386 libmpdec2 i386 2.4.2-2 [80.0 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main i386 libpython3.7-stdlib i386 3.7.4~rc1-1 [1757 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main i386 gfortran i386 4:9.1.0-1ubuntu4 [1336 B] Get:13 http://ftpmaster.internal/ubuntu eoan/main i386 python3.7 i386 3.7.4~rc1-1 [293 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main i386 libpython3-stdlib i386 3.7.3-1 [6976 B] Get:15 http://ftpmaster.internal/ubuntu eoan/main i386 python3 i386 3.7.3-1 [47.2 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:17 http://ftpmaster.internal/ubuntu eoan/main i386 libbsd0 i386 0.9.1-2 [49.0 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb1 i386 1.13.1-2 [49.9 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main i386 libx11-data all 2:1.6.7-1 [113 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main i386 libx11-6 i386 2:1.6.7-1 [594 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main i386 groff-base i386 1.22.4-3 [879 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main i386 libpipeline1 i386 1.5.1-2 [28.0 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main i386 man-db i386 2.8.5-2 [1111 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-double3 i386 3.3.8-2 [632 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main i386 libfreetype6 i386 2.9.1-3 [350 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main i386 ucf all 3.0038+nmu1 [51.6 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main i386 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main i386 libfontconfig1 i386 2.13.1-2ubuntu2 [124 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main i386 libjbig0 i386 2.1-3.1build1 [27.3 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main i386 libjpeg-turbo8 i386 2.0.1-0ubuntu2 [126 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:37 http://ftpmaster.internal/ubuntu eoan/main i386 liblcms2-2 i386 2.9-3 [149 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main i386 libglib2.0-0 i386 2.60.4-1 [1319 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main i386 liblqr-1-0 i386 0.4.2-2.1 [29.2 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main i386 libltdl7 i386 2.4.6-10 [40.0 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main i386 libwebp6 i386 0.6.1-2 [197 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main i386 libtiff5 i386 4.0.10-4 [168 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main i386 libwebpmux3 i386 0.6.1-2 [21.0 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main i386 libicu63 i386 63.2-2 [8442 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu3 [658 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main i386 imagemagick-6-common all 8:6.9.10.23+dfsg-2.1ubuntu3 [61.1 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main i386 libmagickcore-6.q16-6 i386 8:6.9.10.23+dfsg-2.1ubuntu3 [1697 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main i386 libmagickwand-6.q16-6 i386 8:6.9.10.23+dfsg-2.1ubuntu3 [289 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/universe i386 libmng2 i386 2.0.2-0ubuntu3 [166 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main i386 libogg0 i386 1.3.2-1 [16.2 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main i386 libxxf86vm1 i386 1:1.1.4-1 [11.3 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/universe i386 libpython2.7-minimal i386 2.7.16-2 [335 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/universe i386 python2.7-minimal i386 2.7.16-2 [1326 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/universe i386 python2-minimal i386 2.7.16-1 [27.8 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/universe i386 python-minimal i386 2.7.16-1 [5996 B] Get:56 http://ftpmaster.internal/ubuntu eoan/universe i386 libpython2.7-stdlib i386 2.7.16-2 [1935 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/universe i386 python2.7 i386 2.7.16-2 [244 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/universe i386 libpython2-stdlib i386 2.7.16-1 [7432 B] Get:59 http://ftpmaster.internal/ubuntu eoan/universe i386 libpython-stdlib i386 2.7.16-1 [5828 B] Get:60 http://ftpmaster.internal/ubuntu eoan/universe i386 python2 i386 2.7.16-1 [26.5 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/universe i386 python i386 2.7.16-1 [7840 B] Get:62 http://ftpmaster.internal/ubuntu eoan/main i386 tex-common all 6.11 [32.7 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main i386 fontconfig i386 2.13.1-2ubuntu2 [171 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main i386 libfribidi0 i386 1.0.5-3.1 [26.7 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main i386 libthai-data all 0.1.28-2 [134 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main i386 libdatrie1 i386 0.2.12-2 [19.9 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main i386 libthai0 i386 0.1.28-2 [19.3 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main i386 libpango-1.0-0 i386 1.42.4-6 [160 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/universe i386 libpangox-1.0-0 i386 0.0.2-5 [43.3 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-keysyms1 i386 0.4.0-1 [8562 B] Get:71 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-render0 i386 1.13.1-2 [15.9 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-render-util0 i386 0.3.9-1 [9724 B] Get:73 http://ftpmaster.internal/ubuntu eoan/main i386 libmagic-mgc i386 1:5.35-4 [200 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main i386 libmagic1 i386 1:5.35-4 [80.4 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main i386 file i386 1:5.35-4 [22.9 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main i386 libgirepository-1.0-1 i386 1.60.1-1 [89.3 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-glib-2.0 i386 1.60.1-1 [133 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main i386 libdbus-1-3 i386 1.12.14-1ubuntu2 [191 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main i386 libelf1 i386 0.176-1.1 [50.1 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main i386 libglib2.0-data all 2.60.4-1 [7152 B] Get:81 http://ftpmaster.internal/ubuntu eoan/main i386 shared-mime-info i386 1.10-1 [430 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main i386 xkb-data all 2.26-2ubuntu1 [333 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main i386 gettext-base i386 0.19.8.1-9 [51.2 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-common all 2.4.97-1ubuntu1 [5184 B] Get:85 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm2 i386 2.4.97-1ubuntu1 [33.7 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main i386 libedit2 i386 3.1-20190324-1~exp1 [90.1 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main i386 libkrb5support0 i386 1.17-3 [36.1 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main i386 libk5crypto3 i386 1.17-3 [90.4 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main i386 libkeyutils1 i386 1.6-6 [10.5 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main i386 libkrb5-3 i386 1.17-3 [358 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main i386 libgssapi-krb5-2 i386 1.17-3 [132 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main i386 libpsl5 i386 0.20.2-2 [50.7 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main i386 hicolor-icon-theme all 0.17-2 [9976 B] Get:94 http://ftpmaster.internal/ubuntu eoan/main i386 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [6056 B] Get:95 http://ftpmaster.internal/ubuntu eoan/main i386 libgdk-pixbuf2.0-0 i386 2.38.1+dfsg-1 [180 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main i386 gtk-update-icon-cache i386 3.24.8-1ubuntu1 [28.0 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main i386 libpixman-1-0 i386 0.36.0-1 [233 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-shm0 i386 1.13.1-2 [5744 B] Get:99 http://ftpmaster.internal/ubuntu eoan/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main i386 libcairo2 i386 1.16.0-4 [638 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main i386 libcroco3 i386 0.6.12-3 [87.9 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main i386 libgraphite2-3 i386 1.3.13-7 [76.5 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main i386 libharfbuzz0b i386 2.4.0-1 [392 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main i386 libpangoft2-1.0-0 i386 1.42.4-6 [38.3 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main i386 libpangocairo-1.0-0 i386 1.42.4-6 [24.8 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main i386 librsvg2-2 i386 2.44.10-2.1 [1311 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main i386 librsvg2-common i386 2.44.10-2.1 [9148 B] Get:108 http://ftpmaster.internal/ubuntu eoan/main i386 humanity-icon-theme all 0.6.15 [1250 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main i386 ubuntu-mono all 19.04-0ubuntu1 [149 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main i386 adwaita-icon-theme all 3.32.0-1ubuntu1 [3160 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main i386 m4 i386 1.4.18-2 [202 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main i386 autoconf all 2.69-11 [322 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main i386 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main i386 autopoint all 0.19.8.1-9 [412 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main i386 bc i386 1.07.1-2build1 [88.0 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main i386 libtool all 2.4.6-10 [194 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main i386 dh-autoreconf all 19 [16.1 kB] Get:120 http://ftpmaster.internal/ubuntu eoan/main i386 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [13.7 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main i386 dh-strip-nondeterminism all 1.1.2-1 [5208 B] Get:123 http://ftpmaster.internal/ubuntu eoan/main i386 dwz i386 0.12-3 [81.5 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main i386 gettext i386 0.19.8.1-9 [905 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main i386 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main i386 po-debconf all 1.0.21 [233 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main i386 debhelper all 12.1.1ubuntu1 [899 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main i386 libatk1.0-data all 2.32.0-1 [2964 B] Get:129 http://ftpmaster.internal/ubuntu eoan/main i386 libatk1.0-0 i386 2.32.0-1 [44.2 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-atk-1.0 i386 2.32.0-1 [18.0 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-freedesktop i386 1.60.1-1 [9108 B] Get:132 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-gdkpixbuf-2.0 i386 2.38.1+dfsg-1 [8220 B] Get:133 http://ftpmaster.internal/ubuntu eoan/main i386 libgtk2.0-common all 2.24.32-3ubuntu1 [125 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main i386 libxft2 i386 2.3.2-2 [39.6 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main i386 libpangoxft-1.0-0 i386 1.42.4-6 [18.2 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-pango-1.0 i386 1.42.4-6 [23.0 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main i386 libavahi-common-data i386 0.7-4ubuntu5 [21.4 kB] Get:138 http://ftpmaster.internal/ubuntu eoan/main i386 libavahi-common3 i386 0.7-4ubuntu5 [23.1 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main i386 libavahi-client3 i386 0.7-4ubuntu5 [27.6 kB] Get:140 http://ftpmaster.internal/ubuntu eoan/main i386 libcups2 i386 2.2.10-6ubuntu1 [225 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/main i386 libxcomposite1 i386 1:0.4.4-2 [7184 B] Get:142 http://ftpmaster.internal/ubuntu eoan/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/main i386 libxcursor1 i386 1:1.2.0-1 [21.5 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:145 http://ftpmaster.internal/ubuntu eoan/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/main i386 libxinerama1 i386 2:1.1.4-2 [7164 B] Get:147 http://ftpmaster.internal/ubuntu eoan/main i386 libxrandr2 i386 2:1.5.1-1 [19.9 kB] Get:148 http://ftpmaster.internal/ubuntu eoan/main i386 libgtk2.0-0 i386 2.24.32-3ubuntu1 [1902 kB] Get:149 http://ftpmaster.internal/ubuntu eoan/universe i386 gir1.2-gtk-2.0 i386 2.24.32-3ubuntu1 [172 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main i386 gir1.2-harfbuzz-0.0 i386 2.4.0-1 [25.2 kB] Get:151 http://ftpmaster.internal/ubuntu eoan/universe i386 hdf5-helpers i386 1.10.4+repack-10 [13.9 kB] Get:152 http://ftpmaster.internal/ubuntu eoan/main i386 icu-devtools i386 63.2-2 [187 kB] Get:153 http://ftpmaster.internal/ubuntu eoan/universe i386 imagemagick-6.q16 i386 8:6.9.10.23+dfsg-2.1ubuntu3 [427 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/universe i386 imagemagick i386 8:6.9.10.23+dfsg-2.1ubuntu3 [14.4 kB] Get:155 http://ftpmaster.internal/ubuntu eoan/universe i386 libaec0 i386 1.0.2-1 [21.6 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/main i386 libsuitesparseconfig5 i386 1:5.4.0+dfsg-1 [9276 B] Get:157 http://ftpmaster.internal/ubuntu eoan/main i386 libamd2 i386 1:5.4.0+dfsg-1 [14.1 kB] Get:158 http://ftpmaster.internal/ubuntu eoan/main i386 libblas3 i386 3.8.0-2 [132 kB] Get:159 http://ftpmaster.internal/ubuntu eoan/main i386 liblapack3 i386 3.8.0-2 [1960 kB] Get:160 http://ftpmaster.internal/ubuntu eoan/universe i386 libarpack2 i386 3.7.0-2 [92.9 kB] Get:161 http://ftpmaster.internal/ubuntu eoan/main i386 libroken18-heimdal i386 7.5.0+dfsg-3 [44.9 kB] Get:162 http://ftpmaster.internal/ubuntu eoan/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-3 [186 kB] Get:163 http://ftpmaster.internal/ubuntu eoan/main i386 libasound2-data all 1.1.8-1 [41.5 kB] Get:164 http://ftpmaster.internal/ubuntu eoan/main i386 libasound2 i386 1.1.8-1 [361 kB] Get:165 http://ftpmaster.internal/ubuntu eoan/main i386 pkg-config i386 0.29.1-0ubuntu3 [46.4 kB] Get:166 http://ftpmaster.internal/ubuntu eoan/main i386 libffi-dev i386 3.2.1-9 [156 kB] Get:167 http://ftpmaster.internal/ubuntu eoan/main i386 libglib2.0-bin i386 2.60.4-1 [75.9 kB] Get:168 http://ftpmaster.internal/ubuntu eoan/main i386 python3-lib2to3 all 3.7.3-1ubuntu1 [75.4 kB] Get:169 http://ftpmaster.internal/ubuntu eoan/main i386 python3-distutils all 3.7.3-1ubuntu1 [140 kB] Get:170 http://ftpmaster.internal/ubuntu eoan/main i386 libglib2.0-dev-bin i386 2.60.4-1 [106 kB] Get:171 http://ftpmaster.internal/ubuntu eoan/main i386 uuid-dev i386 2.33.1-0.1ubuntu2 [34.0 kB] Get:172 http://ftpmaster.internal/ubuntu eoan/main i386 libblkid-dev i386 2.33.1-0.1ubuntu2 [186 kB] Get:173 http://ftpmaster.internal/ubuntu eoan/main i386 libmount-dev i386 2.33.1-0.1ubuntu2 [192 kB] Get:174 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre16-3 i386 2:8.39-12 [148 kB] Get:175 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre32-3 i386 2:8.39-12 [140 kB] Get:176 http://ftpmaster.internal/ubuntu eoan/main i386 libpcrecpp0v5 i386 2:8.39-12 [16.5 kB] Get:177 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre3-dev i386 2:8.39-12 [546 kB] Get:178 http://ftpmaster.internal/ubuntu eoan/main i386 libsepol1-dev i386 2.9-1 [360 kB] Get:179 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre2-16-0 i386 10.32-5 [170 kB] Get:180 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre2-32-0 i386 10.32-5 [162 kB] Get:181 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre2-posix0 i386 10.32-5 [5728 B] Get:182 http://ftpmaster.internal/ubuntu eoan/main i386 libpcre2-dev i386 10.32-5 [639 kB] Get:183 http://ftpmaster.internal/ubuntu eoan/main i386 libselinux1-dev i386 2.9-1 [159 kB] Get:184 http://ftpmaster.internal/ubuntu eoan/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1ubuntu2 [175 kB] Get:185 http://ftpmaster.internal/ubuntu eoan/main i386 libglib2.0-dev i386 2.60.4-1 [1582 kB] Get:186 http://ftpmaster.internal/ubuntu eoan/main i386 libatk1.0-dev i386 2.32.0-1 [91.3 kB] Get:187 http://ftpmaster.internal/ubuntu eoan/main i386 libsigc++-2.0-0v5 i386 2.10.1-2 [12.7 kB] Get:188 http://ftpmaster.internal/ubuntu eoan/main i386 libglibmm-2.4-1v5 i386 2.60.0-1 [581 kB] Get:189 http://ftpmaster.internal/ubuntu eoan/main i386 libatkmm-1.6-1v5 i386 2.28.0-2 [68.7 kB] Get:190 http://ftpmaster.internal/ubuntu eoan/main i386 libsigc++-2.0-dev i386 2.10.1-2 [66.1 kB] Get:191 http://ftpmaster.internal/ubuntu eoan/main i386 libglibmm-2.4-dev i386 2.60.0-1 [433 kB] Get:192 http://ftpmaster.internal/ubuntu eoan/main i386 libatkmm-1.6-dev i386 2.28.0-2 [33.1 kB] Get:193 http://ftpmaster.internal/ubuntu eoan/main i386 x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:194 http://ftpmaster.internal/ubuntu eoan/main i386 libice6 i386 2:1.0.9-2 [42.6 kB] Get:195 http://ftpmaster.internal/ubuntu eoan/main i386 libsm6 i386 2:1.2.3-1 [16.7 kB] Get:196 http://ftpmaster.internal/ubuntu eoan/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:197 http://ftpmaster.internal/ubuntu eoan/universe i386 libaudio2 i386 1.9.4-6 [54.0 kB] Get:198 http://ftpmaster.internal/ubuntu eoan/main i386 libblas-dev i386 3.8.0-2 [137 kB] Get:199 http://ftpmaster.internal/ubuntu eoan/main i386 libcairo-gobject2 i386 1.16.0-4 [16.6 kB] Get:200 http://ftpmaster.internal/ubuntu eoan/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:201 http://ftpmaster.internal/ubuntu eoan/main i386 libcairo-script-interpreter2 i386 1.16.0-4 [57.8 kB] Get:202 http://ftpmaster.internal/ubuntu eoan/main i386 libexpat1-dev i386 2.2.6-1 [137 kB] Get:203 http://ftpmaster.internal/ubuntu eoan/main i386 libpng-dev i386 1.6.37-1~exp4 [185 kB] Get:204 http://ftpmaster.internal/ubuntu eoan/main i386 libfreetype6-dev i386 2.9.1-3 [517 kB] Get:205 http://ftpmaster.internal/ubuntu eoan/main i386 libfontconfig1-dev i386 2.13.1-2ubuntu2 [747 kB] Get:206 http://ftpmaster.internal/ubuntu eoan/main i386 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:207 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-dev all 2018.4-4 [251 kB] Get:208 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-core-dev all 2018.4-4 [2620 B] Get:209 http://ftpmaster.internal/ubuntu eoan/main i386 libxau-dev i386 1:1.0.8-1 [10.2 kB] Get:210 http://ftpmaster.internal/ubuntu eoan/main i386 libxdmcp-dev i386 1:1.1.2-3 [24.9 kB] Get:211 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-input-dev all 2018.4-4 [2620 B] Get:212 http://ftpmaster.internal/ubuntu eoan/main i386 xtrans-dev all 1.3.5-1 [70.5 kB] Get:213 http://ftpmaster.internal/ubuntu eoan/main i386 libpthread-stubs0-dev i386 0.4-1 [5380 B] Get:214 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb1-dev i386 1.13.1-2 [85.9 kB] Get:215 http://ftpmaster.internal/ubuntu eoan/main i386 libx11-dev i386 2:1.6.7-1 [670 kB] Get:216 http://ftpmaster.internal/ubuntu eoan/main i386 libxrender-dev i386 1:0.9.10-1 [25.1 kB] Get:217 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-xext-dev all 2018.4-4 [2620 B] Get:218 http://ftpmaster.internal/ubuntu eoan/main i386 libxext-dev i386 2:1.3.3-1 [82.8 kB] Get:219 http://ftpmaster.internal/ubuntu eoan/main i386 libice-dev i386 2:1.0.9-2 [46.8 kB] Get:220 http://ftpmaster.internal/ubuntu eoan/main i386 libsm-dev i386 2:1.2.3-1 [18.0 kB] Get:221 http://ftpmaster.internal/ubuntu eoan/main i386 libpixman-1-dev i386 0.36.0-1 [257 kB] Get:222 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-render0-dev i386 1.13.1-2 [19.4 kB] Get:223 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-shm0-dev i386 1.13.1-2 [6904 B] Get:224 http://ftpmaster.internal/ubuntu eoan/main i386 libcairo2-dev i386 1.16.0-4 [701 kB] Get:225 http://ftpmaster.internal/ubuntu eoan/main i386 libcairomm-1.0-1v5 i386 1.12.2-4 [42.1 kB] Get:226 http://ftpmaster.internal/ubuntu eoan/main i386 libcairomm-1.0-dev i386 1.12.2-4 [564 kB] Get:227 http://ftpmaster.internal/ubuntu eoan/main i386 libcamd2 i386 1:5.4.0+dfsg-1 [14.9 kB] Get:228 http://ftpmaster.internal/ubuntu eoan/main i386 libccolamd2 i386 1:5.4.0+dfsg-1 [16.1 kB] Get:229 http://ftpmaster.internal/ubuntu eoan/main i386 libcolamd2 i386 1:5.4.0+dfsg-1 [12.0 kB] Get:230 http://ftpmaster.internal/ubuntu eoan/main i386 libmetis5 i386 5.1.0.dfsg-5 [166 kB] Get:231 http://ftpmaster.internal/ubuntu eoan/main i386 libcholmod3 i386 1:5.4.0+dfsg-1 [235 kB] Get:232 http://ftpmaster.internal/ubuntu eoan/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-3 [32.4 kB] Get:233 http://ftpmaster.internal/ubuntu eoan/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-3 [93.5 kB] Get:234 http://ftpmaster.internal/ubuntu eoan/main i386 libwind0-heimdal i386 7.5.0+dfsg-3 [48.5 kB] Get:235 http://ftpmaster.internal/ubuntu eoan/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-3 [117 kB] Get:236 http://ftpmaster.internal/ubuntu eoan/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-3 [232 kB] Get:237 http://ftpmaster.internal/ubuntu eoan/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-3 [16.3 kB] Get:238 http://ftpmaster.internal/ubuntu eoan/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-3 [106 kB] Get:239 http://ftpmaster.internal/ubuntu eoan/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1 [15.8 kB] Get:240 http://ftpmaster.internal/ubuntu eoan/main i386 libsasl2-2 i386 2.1.27+dfsg-1 [52.8 kB] Get:241 http://ftpmaster.internal/ubuntu eoan/main i386 libldap-common all 2.4.47+dfsg-3ubuntu2 [16.6 kB] Get:242 http://ftpmaster.internal/ubuntu eoan/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3ubuntu2 [166 kB] Get:243 http://ftpmaster.internal/ubuntu eoan/main i386 libnghttp2-14 i386 1.37.0-1 [85.7 kB] Get:244 http://ftpmaster.internal/ubuntu eoan/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:245 http://ftpmaster.internal/ubuntu eoan/main i386 libssh-4 i386 0.8.7-1 [203 kB] Get:246 http://ftpmaster.internal/ubuntu eoan/main i386 libcurl3-gnutls i386 7.64.0-4ubuntu1 [256 kB] Get:247 http://ftpmaster.internal/ubuntu eoan/main i386 libcxsparse3 i386 1:5.4.0+dfsg-1 [46.7 kB] Get:248 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-amdgpu1 i386 2.4.97-1ubuntu1 [20.4 kB] Get:249 http://ftpmaster.internal/ubuntu eoan/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:250 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-intel1 i386 2.4.97-1ubuntu1 [63.1 kB] Get:251 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-radeon1 i386 2.4.97-1ubuntu1 [22.9 kB] Get:252 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-nouveau2 i386 2.4.97-1ubuntu1 [18.2 kB] Get:253 http://ftpmaster.internal/ubuntu eoan/main i386 libdrm-dev i386 2.4.97-1ubuntu1 [121 kB] Get:254 http://ftpmaster.internal/ubuntu eoan/main i386 libwayland-server0 i386 1.16.0-1ubuntu2 [30.8 kB] Get:255 http://ftpmaster.internal/ubuntu eoan/main i386 libgbm1 i386 19.0.5-0ubuntu1 [28.5 kB] Get:256 http://ftpmaster.internal/ubuntu eoan/main i386 libglapi-mesa i386 19.0.5-0ubuntu1 [24.9 kB] Get:257 http://ftpmaster.internal/ubuntu eoan/main i386 libwayland-client0 i386 1.16.0-1ubuntu2 [24.1 kB] Get:258 http://ftpmaster.internal/ubuntu eoan/main i386 libx11-xcb1 i386 2:1.6.7-1 [9208 B] Get:259 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-dri2-0 i386 1.13.1-2 [7248 B] Get:260 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-dri3-0 i386 1.13.1-2 [6936 B] Get:261 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-present0 i386 1.13.1-2 [5712 B] Get:262 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-sync1 i386 1.13.1-2 [9224 B] Get:263 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-xfixes0 i386 1.13.1-2 [9772 B] Get:264 http://ftpmaster.internal/ubuntu eoan/main i386 libxshmfence1 i386 1.3-1 [5180 B] Get:265 http://ftpmaster.internal/ubuntu eoan/main i386 libegl-mesa0 i386 19.0.5-0ubuntu1 [102 kB] Get:266 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-long3 i386 3.3.8-2 [319 kB] Get:267 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-quad3 i386 3.3.8-2 [1756 kB] Get:268 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-single3 i386 3.3.8-2 [645 kB] Get:269 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-bin i386 3.3.8-2 [34.7 kB] Get:270 http://ftpmaster.internal/ubuntu eoan/main i386 libfftw3-dev i386 3.3.8-2 [3150 kB] Get:271 http://ftpmaster.internal/ubuntu eoan/main i386 libflac8 i386 1.3.2-3 [154 kB] Get:272 http://ftpmaster.internal/ubuntu eoan/universe i386 libfltk1.3 i386 1.3.4-9ubuntu1 [572 kB] Get:273 http://ftpmaster.internal/ubuntu eoan/main i386 libglvnd0 i386 1.1.1-0ubuntu1 [40.0 kB] Get:274 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-glx0 i386 1.13.1-2 [23.8 kB] Get:275 http://ftpmaster.internal/ubuntu eoan/main i386 libllvm8 i386 1:8.0.1~+rc1-1~exp1 [13.6 MB] Get:276 http://ftpmaster.internal/ubuntu eoan/main i386 libsensors-config all 1:3.5.0-3ubuntu1 [6168 B] Get:277 http://ftpmaster.internal/ubuntu eoan/main i386 libsensors5 i386 1:3.5.0-3ubuntu1 [28.0 kB] Get:278 http://ftpmaster.internal/ubuntu eoan/main i386 libgl1-mesa-dri i386 19.0.5-0ubuntu1 [7210 kB] Get:279 http://ftpmaster.internal/ubuntu eoan/main i386 libglx-mesa0 i386 19.0.5-0ubuntu1 [145 kB] Get:280 http://ftpmaster.internal/ubuntu eoan/main i386 libglx0 i386 1.1.1-0ubuntu1 [29.4 kB] Get:281 http://ftpmaster.internal/ubuntu eoan/main i386 libgl1 i386 1.1.1-0ubuntu1 [80.4 kB] Get:282 http://ftpmaster.internal/ubuntu eoan/universe i386 libfltk-gl1.3 i386 1.3.4-9ubuntu1 [38.6 kB] Get:283 http://ftpmaster.internal/ubuntu eoan/main i386 libfribidi-dev i386 1.0.5-3.1 [63.4 kB] Get:284 http://ftpmaster.internal/ubuntu eoan/main i386 libgdk-pixbuf2.0-bin i386 2.38.1+dfsg-1 [14.0 kB] Get:285 http://ftpmaster.internal/ubuntu eoan/main i386 libgdk-pixbuf2.0-dev i386 2.38.1+dfsg-1 [42.5 kB] Get:286 http://ftpmaster.internal/ubuntu eoan/universe i386 libgl2ps1.4 i386 1.4.0+dfsg1-2 [38.5 kB] Get:287 http://ftpmaster.internal/ubuntu eoan/main i386 libgles1 i386 1.1.1-0ubuntu1 [12.0 kB] Get:288 http://ftpmaster.internal/ubuntu eoan/universe i386 libglpk40 i386 4.65-2 [398 kB] Get:289 http://ftpmaster.internal/ubuntu eoan/main i386 libglu1-mesa i386 9.0.0-2.1build1 [178 kB] Get:290 http://ftpmaster.internal/ubuntu eoan/main i386 mesa-common-dev i386 19.0.5-0ubuntu1 [601 kB] Get:291 http://ftpmaster.internal/ubuntu eoan/main i386 libglvnd-core-dev i386 1.1.1-0ubuntu1 [12.6 kB] Get:292 http://ftpmaster.internal/ubuntu eoan/main i386 libegl1 i386 1.1.1-0ubuntu1 [33.6 kB] Get:293 http://ftpmaster.internal/ubuntu eoan/main i386 libgles2 i386 1.1.1-0ubuntu1 [17.0 kB] Get:294 http://ftpmaster.internal/ubuntu eoan/main i386 libopengl0 i386 1.1.1-0ubuntu1 [29.2 kB] Get:295 http://ftpmaster.internal/ubuntu eoan/main i386 libglvnd-dev i386 1.1.1-0ubuntu1 [3400 B] Get:296 http://ftpmaster.internal/ubuntu eoan/main i386 libx11-xcb-dev i386 2:1.6.7-1 [9752 B] Get:297 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-dri3-dev i386 1.13.1-2 [7672 B] Get:298 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-randr0 i386 1.13.1-2 [17.9 kB] Get:299 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-randr0-dev i386 1.13.1-2 [21.9 kB] Get:300 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-shape0 i386 1.13.1-2 [6120 B] Get:301 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-shape0-dev i386 1.13.1-2 [7352 B] Get:302 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-xfixes0-dev i386 1.13.1-2 [12.1 kB] Get:303 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-sync-dev i386 1.13.1-2 [11.1 kB] Get:304 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-present-dev i386 1.13.1-2 [7176 B] Get:305 http://ftpmaster.internal/ubuntu eoan/main i386 libxshmfence-dev i386 1.3-1 [3896 B] Get:306 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-dri2-0-dev i386 1.13.1-2 [8780 B] Get:307 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-glx0-dev i386 1.13.1-2 [29.3 kB] Get:308 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:309 http://ftpmaster.internal/ubuntu eoan/main i386 libxfixes-dev i386 1:5.0.3-1 [11.2 kB] Get:310 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:311 http://ftpmaster.internal/ubuntu eoan/main i386 libxdamage-dev i386 1:1.1.4-3 [5174 B] Get:312 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:313 http://ftpmaster.internal/ubuntu eoan/main i386 libxxf86vm-dev i386 1:1.1.4-1 [13.9 kB] Get:314 http://ftpmaster.internal/ubuntu eoan/main i386 libgl1-mesa-dev i386 19.0.5-0ubuntu1 [6024 B] Get:315 http://ftpmaster.internal/ubuntu eoan/main i386 libglu1-mesa-dev i386 9.0.0-2.1build1 [204 kB] Get:316 http://ftpmaster.internal/ubuntu eoan/main i386 libwmf0.2-7 i386 0.2.8.4-14 [156 kB] Get:317 http://ftpmaster.internal/ubuntu eoan/universe i386 libgraphicsmagick-q16-3 i386 1.4+really1.3.32-1 [1190 kB] Get:318 http://ftpmaster.internal/ubuntu eoan/universe i386 libgraphicsmagick++-q16-12 i386 1.4+really1.3.32-1 [110 kB] Get:319 http://ftpmaster.internal/ubuntu eoan/main i386 libgraphite2-dev i386 1.3.13-7 [14.7 kB] Get:320 http://ftpmaster.internal/ubuntu eoan/universe i386 libgslcblas0 i386 2.5+dfsg-6 [82.1 kB] Get:321 http://ftpmaster.internal/ubuntu eoan/universe i386 libgsl23 i386 2.5+dfsg-6 [829 kB] Get:322 http://ftpmaster.internal/ubuntu eoan/universe i386 libgsl-dev i386 2.5+dfsg-6 [1075 kB] Get:323 http://ftpmaster.internal/ubuntu eoan/main i386 libharfbuzz-icu0 i386 2.4.0-1 [5688 B] Get:324 http://ftpmaster.internal/ubuntu eoan/main i386 libharfbuzz-gobject0 i386 2.4.0-1 [17.4 kB] Get:325 http://ftpmaster.internal/ubuntu eoan/main i386 libicu-dev i386 63.2-2 [9373 kB] Get:326 http://ftpmaster.internal/ubuntu eoan/main i386 libharfbuzz-dev i386 2.4.0-1 [534 kB] Get:327 http://ftpmaster.internal/ubuntu eoan/main i386 libxft-dev i386 2.3.2-2 [50.3 kB] Get:328 http://ftpmaster.internal/ubuntu eoan/main i386 pango1.0-tools i386 1.42.4-6 [25.2 kB] Get:329 http://ftpmaster.internal/ubuntu eoan/main i386 libpango1.0-dev i386 1.42.4-6 [106 kB] Get:330 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-xinerama-dev all 2018.4-4 [2628 B] Get:331 http://ftpmaster.internal/ubuntu eoan/main i386 libxinerama-dev i386 2:1.1.4-2 [8168 B] Get:332 http://ftpmaster.internal/ubuntu eoan/main i386 libxi-dev i386 2:1.7.9-1 [186 kB] Get:333 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-randr-dev all 2018.4-4 [2620 B] Get:334 http://ftpmaster.internal/ubuntu eoan/main i386 libxrandr-dev i386 2:1.5.1-1 [25.1 kB] Get:335 http://ftpmaster.internal/ubuntu eoan/main i386 libxcursor-dev i386 1:1.2.0-1 [28.4 kB] Get:336 http://ftpmaster.internal/ubuntu eoan/main i386 x11proto-composite-dev all 1:2018.4-4 [2620 B] Get:337 http://ftpmaster.internal/ubuntu eoan/main i386 libxcomposite-dev i386 1:0.4.4-2 [9244 B] Get:338 http://ftpmaster.internal/ubuntu eoan/main i386 libxml2-utils i386 2.9.4+dfsg1-7ubuntu3 [36.9 kB] Get:339 http://ftpmaster.internal/ubuntu eoan/universe i386 libgtk2.0-dev i386 2.24.32-3ubuntu1 [2827 kB] Get:340 http://ftpmaster.internal/ubuntu eoan/main i386 libxmu6 i386 2:1.1.2-2 [48.4 kB] Get:341 http://ftpmaster.internal/ubuntu eoan/universe i386 libgtkglext1 i386 1.2.0-9 [75.6 kB] Get:342 http://ftpmaster.internal/ubuntu eoan/universe i386 libpangox-1.0-dev i386 0.0.2-5 [42.7 kB] Get:343 http://ftpmaster.internal/ubuntu eoan/main i386 libxt-dev i386 1:1.1.5-1 [393 kB] Get:344 http://ftpmaster.internal/ubuntu eoan/main i386 libxmu-headers all 2:1.1.2-2 [54.3 kB] Get:345 http://ftpmaster.internal/ubuntu eoan/main i386 libxmu-dev i386 2:1.1.2-2 [49.6 kB] Get:346 http://ftpmaster.internal/ubuntu eoan/universe i386 libgtkglext1-dev i386 1.2.0-9 [364 kB] Get:347 http://ftpmaster.internal/ubuntu eoan/main i386 libpangomm-1.4-1v5 i386 2.42.0-2 [48.4 kB] Get:348 http://ftpmaster.internal/ubuntu eoan/main i386 libgtkmm-2.4-1v5 i386 1:2.24.5-4 [707 kB] Get:349 http://ftpmaster.internal/ubuntu eoan/main i386 libpangomm-1.4-dev i386 2.42.0-2 [49.7 kB] Get:350 http://ftpmaster.internal/ubuntu eoan/universe i386 libgtkmm-2.4-dev i386 1:2.24.5-4 [500 kB] Get:351 http://ftpmaster.internal/ubuntu eoan/main i386 libgudev-1.0-0 i386 1:232-2 [14.2 kB] Get:352 http://ftpmaster.internal/ubuntu eoan/universe i386 libsz2 i386 1.0.2-1 [5196 B] Get:353 http://ftpmaster.internal/ubuntu eoan/universe i386 libhdf5-103 i386 1.10.4+repack-10 [1281 kB] Get:354 http://ftpmaster.internal/ubuntu eoan/universe i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [131 kB] Get:355 http://ftpmaster.internal/ubuntu eoan/main i386 libjpeg-turbo8-dev i386 2.0.1-0ubuntu2 [258 kB] Get:356 http://ftpmaster.internal/ubuntu eoan/main i386 libjpeg8-dev i386 8c-2ubuntu8 [1546 B] Get:357 http://ftpmaster.internal/ubuntu eoan/main i386 libjpeg-dev i386 8c-2ubuntu8 [1544 B] Get:358 http://ftpmaster.internal/ubuntu eoan/universe i386 libaec-dev i386 1.0.2-1 [19.8 kB] Get:359 http://ftpmaster.internal/ubuntu eoan/universe i386 libhdf5-dev i386 1.10.4+repack-10 [2716 kB] Get:360 http://ftpmaster.internal/ubuntu eoan/main i386 libevdev2 i386 1.6.0+dfsg-1 [28.0 kB] Get:361 http://ftpmaster.internal/ubuntu eoan/main i386 libwacom-common all 0.32-1 [38.5 kB] Get:362 http://ftpmaster.internal/ubuntu eoan/main i386 libwacom2 i386 0.32-1 [19.1 kB] Get:363 http://ftpmaster.internal/ubuntu eoan/main i386 libinput-bin i386 1.12.6-2 [13.9 kB] Get:364 http://ftpmaster.internal/ubuntu eoan/main i386 libmtdev1 i386 1.1.5-1ubuntu3 [14.2 kB] Get:365 http://ftpmaster.internal/ubuntu eoan/main i386 libinput10 i386 1.12.6-2 [114 kB] Get:366 http://ftpmaster.internal/ubuntu eoan/main i386 libsamplerate0 i386 0.1.9-2 [937 kB] Get:367 http://ftpmaster.internal/ubuntu eoan/main i386 libjack-jackd2-0 i386 1.9.12~dfsg-2build1 [292 kB] Get:368 http://ftpmaster.internal/ubuntu eoan/main i386 liblapack-dev i386 3.8.0-2 [2022 kB] Get:369 http://ftpmaster.internal/ubuntu eoan/main i386 libncurses-dev i386 6.1+20181013-2ubuntu2 [361 kB] Get:370 http://ftpmaster.internal/ubuntu eoan/universe i386 libqrupdate1 i386 1.1.2-3 [37.5 kB] Get:371 http://ftpmaster.internal/ubuntu eoan/main i386 libumfpack5 i386 1:5.4.0+dfsg-1 [133 kB] Get:372 http://ftpmaster.internal/ubuntu eoan/universe i386 liboctave6 i386 4.4.1-6 [7481 kB] Get:373 http://ftpmaster.internal/ubuntu eoan/universe i386 libportaudio2 i386 19.6.0-1 [67.2 kB] Get:374 http://ftpmaster.internal/ubuntu eoan/universe i386 libqhull7 i386 2015.2-4 [162 kB] Get:375 http://ftpmaster.internal/ubuntu eoan/universe i386 libqscintilla2-qt5-l10n all 2.10.4+dfsg-1build2 [39.9 kB] Get:376 http://ftpmaster.internal/ubuntu eoan/universe i386 libdouble-conversion1 i386 3.1.0-3 [42.0 kB] Get:377 http://ftpmaster.internal/ubuntu eoan/universe i386 libqt5core5a i386 5.12.2+dfsg-4ubuntu1 [2582 kB] Get:378 http://ftpmaster.internal/ubuntu eoan/universe i386 libqt5dbus5 i386 5.12.2+dfsg-4ubuntu1 [234 kB] Get:379 http://ftpmaster.internal/ubuntu eoan/universe i386 libqt5network5 i386 5.12.2+dfsg-4ubuntu1 [763 kB] Get:380 http://ftpmaster.internal/ubuntu eoan/main i386 libxcb-icccm4 i386 0.4.1-1.1 [11.5 kB] Get:381 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http://ftpmaster.internal/ubuntu eoan/universe i386 libqt5help5 i386 5.12.2-1 [147 kB] Get:419 http://ftpmaster.internal/ubuntu eoan/main i386 libreadline-dev i386 8.0-1 [152 kB] Get:420 http://ftpmaster.internal/ubuntu eoan/main i386 libvorbis0a i386 1.3.6-2 [85.5 kB] Get:421 http://ftpmaster.internal/ubuntu eoan/main i386 libvorbisenc2 i386 1.3.6-2 [64.5 kB] Get:422 http://ftpmaster.internal/ubuntu eoan/main i386 libsndfile1 i386 1.0.28-6 [191 kB] Get:423 http://ftpmaster.internal/ubuntu eoan/universe i386 libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:424 http://ftpmaster.internal/ubuntu eoan/main i386 libxml-namespacesupport-perl all 1.12-1 [13.2 kB] Get:425 http://ftpmaster.internal/ubuntu eoan/main i386 libxml-sax-base-perl all 1.09-1 [18.8 kB] Get:426 http://ftpmaster.internal/ubuntu eoan/main i386 libxml-sax-perl all 1.00+dfsg-1.1~build1 [56.1 kB] Get:427 http://ftpmaster.internal/ubuntu eoan/main i386 libxml-libxml-perl i386 2.0134+dfsg-1 [337 kB] Get:428 http://ftpmaster.internal/ubuntu eoan/universe i386 matlab-support-dev all 0.0.21 [6258 B] Get:429 http://ftpmaster.internal/ubuntu eoan/universe i386 texinfo i386 6.5.0.dfsg.1-5 [842 kB] Get:430 http://ftpmaster.internal/ubuntu eoan/universe i386 libeigen3-dev all 3.3.7-1 [814 kB] Get:431 http://ftpmaster.internal/ubuntu eoan/universe i386 octave-common all 4.4.1-6 [4030 kB] Get:432 http://ftpmaster.internal/ubuntu eoan/universe i386 octave i386 4.4.1-6 [1835 kB] Get:433 http://ftpmaster.internal/ubuntu eoan/universe i386 liboctave-dev i386 4.4.1-6 [462 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 181 MB in 7s (25.5 MB/s) Selecting previously unselected package libpython3.7-minimal:i386. (Reading database ... 13878 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.4~rc1-1_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.4~rc1-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.4~rc1-1_i386.deb ... Unpacking python3.7-minimal (3.7.4~rc1-1) ... Setting up libpython3.7-minimal:i386 (3.7.4~rc1-1) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up python3.7-minimal (3.7.4~rc1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14127 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. 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Setting up libasound2:i386 (1.1.8-1) ... Setting up libharfbuzz0b:i386 (2.4.0-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libgirepository-1.0-1:i386 (1.60.1-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libgtk2.0-common (2.24.32-3ubuntu1) ... Setting up libcxsparse3:i386 (1:5.4.0+dfsg-1) ... Setting up libatk1.0-0:i386 (2.32.0-1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libsamplerate0:i386 (0.1.9-2) ... Setting up libwebpmux3:i386 (0.6.1-2) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1ubuntu1) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libevdev2:i386 (1.6.0+dfsg-1) ... Setting up libicu-dev:i386 (63.2-2) ... Setting up libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Setting up libdouble-conversion1:i386 (3.1.0-3) ... Setting up libsuitesparseconfig5:i386 (1:5.4.0+dfsg-1) ... Setting up libgudev-1.0-0:i386 (1:232-2) ... Setting up qtchooser (66-2) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.2-1) ... Setting up libvorbisenc2:i386 (1.3.6-2) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-3) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-7ubuntu1) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:i386 (0.8.2-1) ... Setting up matlab-support-dev (0.0.21) ... Setting up libwayland-client0:i386 (1.16.0-1ubuntu2) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libglibmm-2.4-1v5:i386 (2.60.0-1) ... Setting up libblkid-dev:i386 (2.33.1-0.1ubuntu2) ... Setting up libamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libjpeg-turbo8-dev:i386 (2.0.1-0ubuntu2) ... Setting up libmng2:i386 (2.0.2-0ubuntu3) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:i386 (3.7.4~rc1-1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.13.1-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libharfbuzz-icu0:i386 (2.4.0-1) ... Setting up libxcb-xfixes0:i386 (1.13.1-2) ... Setting up libxau-dev:i386 (1:1.0.8-1) ... Setting up libcolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libpcre2-dev:i386 (10.32-5) ... Setting up python2.7 (2.7.16-2) ... Setting up libxcb-xinput0:i386 (1.13.1-2) ... Setting up libice-dev:i386 (2:1.0.9-2) ... Setting up libtool (2.4.6-10) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libselinux1-dev:i386 (2.9-1) ... Setting up libpcre3-dev:i386 (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up x11proto-randr-dev (2018.4-4) ... Setting up libfribidi-dev:i386 (1.0.5-3.1) ... Setting up libxcb-glx0:i386 (1.13.1-2) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-3) ... Setting up libedit2:i386 (3.1-20190324-1~exp1) ... Setting up libpng-dev:i386 (1.6.37-1~exp4) ... Setting up libxcb-keysyms1:i386 (0.4.0-1) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up libarpack2:i386 (3.7.0-2) ... Setting up libxcb-shape0:i386 (1.13.1-2) ... Setting up libavahi-common3:i386 (0.7-4ubuntu5) ... Setting up libgfortran-9-dev:i386 (9.1.0-4ubuntu1) ... Setting up libglib2.0-bin (2.60.4-1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:i386 (0.3.9-1) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxcb-icccm4:i386 (0.4.1-1.1) ... Setting up libharfbuzz-gobject0:i386 (2.4.0-1) ... Setting up libqrupdate1:i386 (1.1.2-3) ... Setting up libxml-sax-perl (1.00+dfsg-1.1~build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-3) ... Setting up x11proto-xinerama-dev (2018.4-4) ... Setting up python2 (2.7.16-1) ... Setting up libxcb-util1:i386 (0.4.0-0ubuntu3) ... Setting up libfreetype6-dev:i386 (2.9.1-3) ... Setting up libxcb-xkb1:i386 (1.13.1-2) ... Setting up libxcb-image0:i386 (0.4.0-1build1) ... Setting up libxcb-present0:i386 (1.13.1-2) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libsigc++-2.0-dev:i386 (2.10.1-2) ... Setting up libthai0:i386 (0.1.28-2) ... Setting up libcamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-3) ... Setting up libxcb-xinerama0:i386 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up x11proto-composite-dev (1:2018.4-4) ... Setting up libglpk40:i386 (4.65-2) ... Setting up libxcb-sync1:i386 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libhdf5-103:i386 (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:i386 (0.8.2-1) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up x11proto-input-dev (2018.4-4) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqtcore4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up gir1.2-glib-2.0:i386 (1.60.1-1) ... Setting up libqt5core5a:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libssh-4:i386 (0.8.7-1) ... Setting up autoconf (2.69-11) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:i386 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libjack-jackd2-0:i386 (1.9.12~dfsg-2build1) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:i386 (2.4.97-1ubuntu1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libccolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libxcb-randr0:i386 (1.13.1-2) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libtiff5:i386 (4.0.10-4) ... Setting up libfontconfig1:i386 (2.13.1-2ubuntu2) ... Setting up libsndfile1:i386 (1.0.28-6) ... Setting up libatkmm-1.6-1v5:i386 (2.28.0-2) ... Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ... Setting up libxml2-utils (2.9.4+dfsg1-7ubuntu3) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:i386 (0.32-1) ... Setting up libxcomposite1:i386 (1:0.4.4-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up libavahi-client3:i386 (0.7-4ubuntu5) ... Setting up libmount-dev:i386 (2.33.1-0.1ubuntu2) ... Setting up libcholmod3:i386 (1:5.4.0+dfsg-1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up libdrm-amdgpu1:i386 (2.4.97-1ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libllvm8:i386 (1:8.0.1~+rc1-1~exp1) ... Setting up libxcb-dri3-0:i386 (1.13.1-2) ... Setting up python3.7 (3.7.4~rc1-1) ... Setting up libportaudio2:i386 (19.6.0-1) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:i386 (2.4.97-1ubuntu1) ... Setting up gettext (0.19.8.1-9) ... Setting up gir1.2-freedesktop:i386 (1.60.1-1) ... Setting up libfontconfig1-dev:i386 (2.13.1-2ubuntu2) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up libxcb1-dev:i386 (1.13.1-2) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up gfortran-9 (9.1.0-4ubuntu1) ... Setting up libgbm1:i386 (19.0.5-0ubuntu1) ... Setting up libwmf0.2-7:i386 (0.2.8.4-14) ... Setting up gir1.2-atk-1.0:i386 (2.32.0-1) ... Setting up libsm-dev:i386 (2:1.2.3-1) ... Setting up libdrm-radeon1:i386 (2.4.97-1ubuntu1) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-3) ... Setting up libpango-1.0-0:i386 (1.42.4-6) ... Setting up libdrm-intel1:i386 (2.4.97-1ubuntu1) ... Setting up libgl1-mesa-dri:i386 (19.0.5-0ubuntu1) ... Setting up libhdf5-cpp-103:i386 (1.10.4+repack-10) ... Setting up libjpeg-dev:i386 (8c-2ubuntu8) ... Setting up libx11-dev:i386 (2:1.6.7-1) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxcb-dri3-dev:i386 (1.13.1-2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gir1.2-harfbuzz-0.0:i386 (2.4.0-1) ... Setting up gfortran (4:9.1.0-1ubuntu4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:i386 (1.16.0-4) ... Setting up libqt5network5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1) ... Setting up libinput-bin (1.12.6-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt4-sql:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libcairomm-1.0-1v5:i386 (1.12.2-4) ... Setting up libqt5sql5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libxcb-shm0-dev:i386 (1.13.1-2) ... Setting up libmagickcore-6.q16-6:i386 (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libqt4-xml:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libegl-mesa0:i386 (19.0.5-0ubuntu1) ... Setting up libxcb-dri2-0-dev:i386 (1.13.1-2) ... Setting up libumfpack5:i386 (1:5.4.0+dfsg-1) ... Setting up libqt4-test:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:i386 (2.38.1+dfsg-1) ... Setting up libxinerama1:i386 (2:1.1.4-2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libxrandr2:i386 (2:1.5.1-1) ... Setting up libgraphicsmagick-q16-3 (1.4+really1.3.32-1) ... Setting up libxcb-render0-dev:i386 (1.13.1-2) ... Setting up libxcb-glx0-dev:i386 (1.13.1-2) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libaudio2:i386 (1.9.4-6) ... Setting up texinfo (6.5.0.dfsg.1-5) ... Setting up libxcb-shape0-dev:i386 (1.13.1-2) ... Setting up libxext-dev:i386 (2:1.3.3-1) ... Setting up libcups2:i386 (2.2.10-6ubuntu1) ... Setting up libgdk-pixbuf2.0-bin (2.38.1+dfsg-1) ... Setting up libegl1:i386 (1.1.1-0ubuntu1) ... Setting up libmagickwand-6.q16-6:i386 (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libxcb-sync-dev:i386 (1.13.1-2) ... Setting up libgraphicsmagick++-q16-12 (1.4+really1.3.32-1) ... Setting up libcairo-gobject2:i386 (1.16.0-4) ... Setting up libxcb-xfixes0-dev:i386 (1.13.1-2) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-6) ... Setting up libqtdbus4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-lib2to3 (3.7.3-1ubuntu1) ... Setting up libxrender-dev:i386 (1:0.9.10-1) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-3) ... Setting up python3-distutils (3.7.3-1ubuntu1) ... Setting up libcairo-script-interpreter2:i386 (1.16.0-4) ... Setting up libglib2.0-dev-bin (2.60.4-1) ... Setting up libinput10:i386 (1.12.6-2) ... Setting up gtk-update-icon-cache (3.24.8-1ubuntu1) ... Setting up libx11-xcb-dev:i386 (2:1.6.7-1) ... Setting up libdrm-dev:i386 (2.4.97-1ubuntu1) ... Setting up libxft2:i386 (2.3.2-2) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up libxmu6:i386 (2:1.1.2-2) ... Setting up libglx-mesa0:i386 (19.0.5-0ubuntu1) ... Setting up libpangox-1.0-0:i386 (0.0.2-5) ... Setting up libpangoxft-1.0-0:i386 (1.42.4-6) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libqt4-network:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libglx0:i386 (1.1.1-0ubuntu1) ... Setting up gir1.2-gdkpixbuf-2.0:i386 (2.38.1+dfsg-1) ... Setting up qt4-linguist-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1) ... Setting up libxcursor1:i386 (1:1.2.0-1) ... Setting up pango1.0-tools (1.42.4-6) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-3) ... Setting up librsvg2-2:i386 (2.44.10-2.1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up gir1.2-pango-1.0:i386 (1.42.4-6) ... Setting up libxrandr-dev:i386 (2:1.5.1-1) ... Setting up libgl1:i386 (1.1.1-0ubuntu1) ... Setting up libglib2.0-dev:i386 (2.60.4-1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-3) ... Setting up libxcb-randr0-dev:i386 (1.13.1-2) ... Setting up libxt-dev:i386 (1:1.1.5-1) ... Setting up libqt4-xmlpatterns:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libglibmm-2.4-dev:i386 (2.60.0-1) ... Setting up libxcb-present-dev:i386 (1.13.1-2) ... Setting up libxinerama-dev:i386 (2:1.1.4-2) ... Setting up librsvg2-common:i386 (2.44.10-2.1) ... Setting up libpangomm-1.4-1v5:i386 (2.42.0-2) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu1) ... Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1ubuntu3) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libqt4-script:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up mesa-common-dev:i386 (19.0.5-0ubuntu1) ... Setting up libcairo2-dev:i386 (1.16.0-4) ... Setting up libglu1-mesa:i386 (9.0.0-2.1build1) ... Setting up libxi-dev:i386 (2:1.7.9-1) ... Setting up libatk1.0-dev:i386 (2.32.0-1) ... Setting up libxft-dev:i386 (2.3.2-2) ... Setting up libxdamage-dev:i386 (1:1.1.4-3) ... Setting up libharfbuzz-dev:i386 (2.4.0-1) ... Setting up libxcomposite-dev:i386 (1:0.4.4-2) ... Setting up libxcursor-dev:i386 (1:1.2.0-1) ... Setting up libfltk1.3:i386 (1.3.4-9ubuntu1) ... Setting up libfltk-gl1.3:i386 (1.3.4-9ubuntu1) ... Setting up libqt5gui5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3ubuntu2) ... Setting up libglvnd-dev:i386 (1.1.1-0ubuntu1) ... Setting up libcurl3-gnutls:i386 (7.64.0-4ubuntu1) ... Setting up libqt5widgets5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libxmu-dev:i386 (2:1.1.2-2) ... Setting up libqt5help5:i386 (5.12.2-1) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up libgdk-pixbuf2.0-dev:i386 (2.38.1+dfsg-1) ... Setting up liboctave6:i386 (4.4.1-6) ... Setting up libqt5printsupport5:i386 (5.12.2+dfsg-4ubuntu1) ... Setting up libcairomm-1.0-dev:i386 (1.12.2-4) ... Setting up libpango1.0-dev:i386 (1.42.4-6) ... Setting up libqt4-dbus:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up imagemagick (8:6.9.10.23+dfsg-2.1ubuntu3) ... Setting up libqscintilla2-qt5-13 (2.10.4+dfsg-1build2) ... Setting up libatkmm-1.6-dev:i386 (2.28.0-2) ... Setting up libgl1-mesa-dev:i386 (19.0.5-0ubuntu1) ... Setting up libpangomm-1.4-dev:i386 (2.42.0-2) ... Setting up libpangox-1.0-dev (0.0.2-5) ... Setting up libglu1-mesa-dev:i386 (9.0.0-2.1build1) ... Setting up octave (4.4.1-6) ... Setting up liboctave-dev (4.4.1-6) ... Setting up adwaita-icon-theme (3.32.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libqt4-declarative:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libgtk2.0-0:i386 (2.24.32-3ubuntu1) ... Setting up libgtkglext1:i386 (1.2.0-9) ... Setting up dh-autoreconf (19) ... Setting up humanity-icon-theme (0.6.15) ... Setting up gir1.2-gtk-2.0:i386 (2.24.32-3ubuntu1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libgtkmm-2.4-1v5:i386 (1:2.24.5-4) ... Setting up libgtk2.0-dev:i386 (2.24.32-3ubuntu1) ... Setting up libgtkmm-2.4-dev:i386 (1:2.24.5-4) ... Setting up libqtgui4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libgtkglext1-dev:i386 (1.2.0-9) ... Setting up ubuntu-mono (19.04-0ubuntu1) ... Setting up libqt4-help:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up debhelper (12.1.1ubuntu1) ... Setting up libqt4-designer:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-qt3support:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-scripttools:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-svg:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up sbuild-build-depends-mrtrix3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libgdk-pixbuf2.0-0:i386 (2.38.1+dfsg-1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-151-generic amd64 (i686) Toolchain package versions: binutils_2.32.51.20190614-0ubuntu1 dpkg-dev_1.19.6ubuntu1 g++-8_8.3.0-14ubuntu1 g++-9_9.1.0-4ubuntu1 gcc-8_8.3.0-14ubuntu1 gcc-9_9.1.0-4ubuntu1 libc6-dev_2.29-0ubuntu2 libstdc++-8-dev_8.3.0-14ubuntu1 libstdc++-9-dev_9.1.0-4ubuntu1 libstdc++6_9.1.0-4ubuntu1 linux-libc-dev_5.0.0-17.18 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 adwaita-icon-theme_3.32.0-1ubuntu1 apt_1.8.2+19.10 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu3 base-passwd_3.5.46 bash_5.0-4ubuntu1 bc_1.07.1-2build1 binutils_2.32.51.20190614-0ubuntu1 binutils-common_2.32.51.20190614-0ubuntu1 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pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 python_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-2 python2.7-minimal_2.7.16-2 python3_3.7.3-1 python3-distutils_3.7.3-1ubuntu1 python3-lib2to3_3.7.3-1ubuntu1 python3-minimal_3.7.3-1 python3.7_3.7.4~rc1-1 python3.7-minimal_3.7.4~rc1-1 qdbus_4:4.8.7+dfsg-7ubuntu1 qt4-linguist-tools_4:4.8.7+dfsg-7ubuntu1 qt4-qmake_4:4.8.7+dfsg-7ubuntu1 qtchooser_66-2 qtcore4-l10n_4:4.8.7+dfsg-7ubuntu1 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrtrix3-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_240-6ubuntu9 systemd-sysv_240-6ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.93-8ubuntu1 tar_1.30+dfsg-6 tex-common_6.11 texinfo_6.5.0.dfsg.1-5 tzdata_2019a-1 ubuntu-keyring_2018.09.18.1 ubuntu-mono_19.04-0ubuntu1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1ubuntu2 uuid-dev_2.33.1-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 x11proto-composite-dev_1:2018.4-4 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-input-dev_2018.4-4 x11proto-randr-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 x11proto-xinerama-dev_2018.4-4 xkb-data_2.26-2ubuntu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jan 23 02:48:32 2019 UTC gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc dpkg-source: info: extracting mrtrix3 in mrtrix3-3.0~rc3+git135-g2b8e7d0c2 dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying up_blend_python dpkg-source: info: applying changeset_7fb509cf35d5862f073faaa7e136e987486960d9.diff dpkg-source: info: applying changeset_1c1d3304791bd029bca744ff6634bfa4824f6938.diff dpkg-source: info: applying deb_run_tests dpkg-source: info: applying debian_build_cfg Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17110847 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17110847 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17110847 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build clean find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory make[1]: [debian/rules:69: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Ubuntu 9.1.0-4ubuntu1) 9.1.1 20190612 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 32 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.3.7 Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: not found - TIFF support disabled Checking for FFTW library: fftw-3.3.8-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 4.8.7) Checking for Qt qmake: qmake (version 4.8.7) Checking for Qt rcc: rcc (version 4.8.7) Checking for Qt: 4.8.7 writing configuration to file './config': ok make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build -verbose active config is default reading configuration from "config"... getting git version in folder "."... not found getting git version in folder "."... not found version file "./core/version.cpp" is out of date - updating getting git version in folder "."... not found version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/mrinfo bin/peaks2amp bin/warpconvert bin/mrview bin/dwinormalise bin/sh2power bin/voxel2fixel bin/dcmedit bin/mtnormalise bin/tckinfo bin/fixelconvert bin/warpinit bin/mrregister bin/shbasis bin/mrthreshold bin/transformcalc bin/sh2amp bin/dwi2mask bin/amp2sh bin/shconv bin/sh2peaks bin/mrclusterstats bin/mrhistmatch bin/afdconnectivity bin/voxel2mesh bin/dcminfo bin/mraverageheader bin/tcksample bin/mrhistogram bin/dirstat bin/fod2dec bin/tckresample bin/meshconvert bin/mrdegibbs bin/mrfilter bin/mrcheckerboardmask bin/fixelcfestats bin/label2colour bin/dwi2fod bin/label2mesh bin/transformconvert bin/dwiextract bin/tck2fixel bin/tckgen bin/mrmath bin/mrcalc bin/dirflip bin/fixelreorient bin/tcksift2 bin/mrmetric bin/transformcompose bin/dirsplit bin/5tt2gmwmi bin/dwi2tensor bin/tckconvert bin/tcksift bin/warpcorrect bin/tsfdivide bin/mrconvert bin/tckstats bin/tsfthreshold bin/sh2response bin/shview bin/connectomestats bin/5ttedit bin/mrresize bin/dwidenoise bin/fixelcrop bin/dirorder bin/labelconvert bin/tsfinfo bin/maskdump bin/meshfilter bin/mrpad bin/fixelcorrespondence bin/tsfmult bin/tckglobal bin/vectorstats bin/tckedit bin/connectome2tck bin/warp2metric bin/mrtransform bin/maskfilter bin/fixel2voxel bin/fixel2sh bin/fixel2tsf bin/mrstats bin/warpinvert bin/tsfsmooth bin/dirmerge bin/tck2connectome bin/tckmap bin/5ttcheck bin/amp2response bin/mrcat bin/tcktransform bin/mrcrop bin/dirgen bin/mrdump bin/dwi2adc bin/mredit bin/5tt2vis bin/mesh2voxel bin/tensor2metric bin/tckdfc bin/fod2fixel bin/tsfvalidate TODO list contains 505 items launching 4 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o ( 1/505) [CC] tmp/cmd/labelconvert.o ( 3/505) [CC] tmp/src/dwi/directions/file.o ( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp ( 5/505) [CC] tmp/cmd/mrcalc.o ( 6/505) [CC] tmp/core/version.o ( 7/505) [CC] tmp/src/gui/projection.o ( 8/505) [CC] tmp/cmd/mrdump.o ( 9/505) [CC] tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o: In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file inclg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o uded from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 10/505) [CC] tmp/src/registration/transform/rigid.o ( 11/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp ( 12/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o ( 13/505) [CC] tmp/cmd/dirstat.o ( 14/505) [CC] tmp/src/gui/shapes/cylinder.o ( 15/505) [CC] tmp/cmd/mrconvert.o ( 16/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o ( 17/505) [CC] tmp/cmd/dwiextract.o ( 18/505) [CC] tmp/src/dwi/directions/set.o ( 19/505) [CC] tmp/core/file/dicom/dict.o ( 20/505) [CC] tmp/core/app.o ( 21/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o ( 22/505) [CC] tmp/cmd/tsfmult.o ( 23/505) [CC] tmp/cmd/warpinvert.o ( 24/505) [CC] tmp/core/formats/xds.o ( 25/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp ( 26/505) [CC] tmp/src/connectome/lut.o ( 27/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp ( 28/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o ( 29/505) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 30/505) [CC] tmp/src/gui/mrview/mode/volume.o ( 31/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp ( 32/505) [CC] tmp/cmd/mrmetric.o ( 33/505) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/gui.cpp -o tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 34/505) [CC] tmp/src/gui/gui.o ( 35/505) [CC] tmp/cmd/mrcheckerboardmask.o ( 36/505) [CC] tmp/src/gui/mrview/tool/base.o ( 37/505) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (consg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o t mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 38/505) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 39/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp ( 40/505) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/buildg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o /mrtrix3-fWkNH5/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o: src/surface/freesurfer.cpp: In function void MR::Surface::FreeSurfer::read_label(const string&, MR::Surface::VertexList&, MR::Surface::Scalar&): src/surface/freesurfer.cpp:144:21: warning: comparison of integer expressions of different signedness: uint32_t {aka unsigned int} and Eigen::EigenBase >::Index {aka int} [-Wsign-compare] 144 | if (index >= scalar.size()) { | ~~~~~~^~~~~~~~~~~~~~~~ ( 41/505) [CC] tmp/cmd/mrthreshold.o ( 42/505) [CC] tmp/core/image_io/ram.o ( 43/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o ( 44/505) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.hmoc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o :22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 45/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp ( 46/505) [CC] tmp/src/registration/transform/initialiser.o ( 47/505) [CC] tmp/core/math/SH.o ( 48/505) [CC] tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o mp/cmd/tckdfc.o ( 49/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI:g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/color_button.cpp -o tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o :GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 50/505) [CC] tmp/src/gui/color_button.o ( 51/505) [CC] tmp/cmd/5ttedit.o ( 52/505) [CC] tmp/src/dwi/tractography/roi.o ( 53/505) [CC] tmp/cmd/dirgen.o ( 54/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o ( 55/505) [CC] tmp/cmd/tcksample.o ( 56/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projectg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o ion.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 57/505) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o 11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 58/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp ( 59/505) [CC] tmp/src/dwi/fmls.o ( 60/505) [CC] tmp/src/surface/filter/vertex_transform.o ( 61/505) [CC] tmp/core/formats/nifti2_gz.o ( 62/505) [CC] tmp/src/stats/tfce.o ( 63/505) [CC] tmp/cmd/mrhistogram.o ( 64/505) [CC] tmp/cmd/mrview.o ( 65/505) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:210:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projectiong++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o *; _Size = unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:255:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:366:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/mrview/displayable.h:21, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/gui.h:19, from cmd/mrview.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 66/505) [CC] tmp/src/gui/dialog/image_properties.o ( 67/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o ( 68/505) [CC] tmp/cmd/warpconvert.o ( 69/505) [CC] tmp/core/formats/dicom.o ( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o ( 71/505) [CC] tmp/cmd/maskdump.o ( 72/505) [CC] tmp/cmd/meshfilter.o ( 73/505) [CC] tmp/src/gui/dialog/report_exception.o ( 74/505) [CC] tmp/src/dwi/tractography/editing/editing.o ( 75/505) [CC] tmp/cmd/5ttcheck.o ( 76/505) [RCC] tmp/src/gui/shview/icons.cpp ( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o ( 78/505) [CC] tmp/src/gui/dialog/dialog.o ( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o ( 80/505) [CC] tmp/cmd/mrdegibbs.o ( 81/505) [CC] tmp/src/surface/filter/smooth.o ( 82/505) [CC] tmp/src/dwi/tractography/rng.o ( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o ( 84/505) [CC] tmp/src/gui/mrview/displayable.o ( 85/505) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file ing++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o cluded from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 86/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has usermoc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permstack.cpp -o tmp/src/stats/permstack.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o -provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 87/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp ( 88/505) [CC] tmp/src/dwi/tractography/connectome/extract.o ( 89/505) [CC] tmp/src/gui/mrview/colourmap_button.o ( 90/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o ( 91/505) [CC] tmp/src/dwi/directions/predefined.o ( 92/505) [CC] tmp/cmd/mrstats.o ( 93/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o ( 94/505) [CC] tmp/src/dwi/tractography/editing/receiver.o ( 95/505) [CC] tmp/core/image_io/mosaic.o ( 96/505) [CC] tmp/src/dwi/tractography/seeding/basic.o ( 97/505) [CC] tmp/src/gui/opengl/lighting_moc.o ( 98/505) [CC] tmp/cmd/tckinfo.o ( 99/505) [CC] tmp/src/stats/permstack.o (100/505) [CC] tmp/cmd/dirsplit.o (101/505) [CC] tmp/src/gui/mrview/tool/odf/model.o (102/505) [CC] tmp/core/file/dicom/series.o (103/505) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformmoc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o ation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (104/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (105/505) [CC] tmp/core/formats/nifti1.o (106/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (107/505) [CC] tmp/src/gui/shapes/sphereg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o .o (108/505) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projectiong++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o .h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (109/505) [CC] tmp/cmd/dwi2adc.o (110/505) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o ^~~~ (111/505) [CC] tmp/src/dwi/gradient.o (112/505) [CC] tmp/cmd/mrfilter.o (113/505) [CC] tmp/src/dwi/tractography/ACT/act.o (114/505) [CC] tmp/core/file/dicom/element.o (115/505) [CC] tmp/src/dwi/tractography/editing/worker.o (116/505) [CC] tmp/cmd/tsfthreshold.o (117/505) [CC] tmp/src/gui/mrview/combo_box_error.o (118/505) [CC] tmp/cmd/meshconvert.o (119/505) [CC] tmp/src/registration/nonlinear.o (120/505) [CC] tmp/cmd/amp2response.o (121/505) [CC] tmp/core/file/name_parser.o (122/505) [CC] tmp/cmd/tck2connectome.o (123/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (124/505) [CC] tmp/src/dwi/tractography/seeding/list.o (125/505) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o: In file included from cmd/tck2connectome.cpp:28: src/dwi/tractography/connectome/metric.h: In member function void MR::DWI::Tractography::Connectome::Metric::set_scale_invnodevol(MR::Image&, bool): src/dwi/tractography/connectome/metric.h:109:19: warning: comparison of integer expressions of different signedness: const node_t {aka const unsigned int} and Eigen::EigenBase >::Index {aka int} [-Wsign-compare] 109 | if (index >= node_volumes.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ (126/505) [CC] tmp/core/stats.o (127/505) [CC] tmp/src/surface/filter/base.o (128/505) [CC] tmp/src/gui/mrview/gui_image.o (129/505) [CC] tmp/src/gui/mrview/window.o (130/505) [CC] tmp/cmd/mrresize.o (131/505) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (132/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file ig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o ncluded from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (133/505) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o &) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (134/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (135/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o (136/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o (137/505) [CC] tmp/src/gui/mrview/modeg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o /slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:210:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:255:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:366:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/window.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (138/505) [CC] tmp/core/file/dicom/patient.o (139/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (140/505) [CC] tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:6g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o 9:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (141/505) [CC] tmp/src/gui/mrview/adjust_button.o (142/505) [CC] tmp/cmd/5tt2gmwmi.o (143/505) [CC] tmp/cmd/warpinit.o (144/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (145/505) [CC] tmp/cmd/tckresample.o (146/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (147/505) [CC] tmp/src/surface/algo/mesh2image.o (148/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (149/505) [CC] tmp/core/file/dicom/select_cmdline.o (150/505) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:2g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o 0, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (151/505) [CC] tmp/src/gui/shview/render_window.o (152/505) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o ote: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (153/505) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:51:24: g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ src/gui/mrview/tool/connectome/connectome.cpp: In member function void MR::GUI::MRView::Tool::Connectome::add_matrices(const MR::vector >&): src/gui/mrview/tool/connectome/connectome.cpp:2332:33: warning: comparison of integer expressions of different signedness: Eigen::Index {aka int} and MR::Connectome::node_t {aka unsigned int} [-Wsign-compare] 2332 | if (matrix.rows() != num_nodes()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ src/gui/mrview/tool/connectome/connectome.cpp: In member function bool MR::GUI::MRView::Tool::Connectome::import_vector_file(MR::GUI::MRView::Tool::FileDataVector&, const string&): src/gui/mrview/tool/connectome/connectome.cpp:2703:29: warning: comparison of integer expressions of different signedness: Eigen::EigenBase >::Index {aka int} and MR::Connectome::node_t {aka unsigned int} [-Wsign-compare] 2703 | if (data.size() != num_nodes()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ src/gui/mrview/tool/connectome/connectome.cpp: In member function bool MR::GUI::MRView::Tool::Connectome::import_matrix_file(MR::GUI::MRView::Tool::FileDataVector&, const string&): src/gui/mrview/tool/connectome/connectome.cpp:2726:29: warning: comparison of integer expressions of different signedness: Eigen::Index {aka int} and MR::Connectome::node_t {aka unsigned int} [-Wsign-compare] 2726 | if (temp.rows() != num_nodes()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from src/gui/mrview/tool/connectome/types.h:19, from src/gui/mrview/tool/connectome/connectome.h:23, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/connectome/connectome.h: In instantiation of void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array]: src/gui/mrview/tool/connectome/connectome.cpp:2331:47: required from here src/connectome/connectome.h:107:32: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 107 | for (node_t row = 0; row != in.rows(); ++row) { src/connectome/connectome.h:108:38: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 108 | for (node_t col = row+1; col != in.cols(); ++col) { src/connectome/connectome.h: In instantiation of bool MR::Connectome::is_directed(MatrixType&) [with MatrixType = Eigen::Array]: src/connectome/connectome.h:104:23: required from void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array] src/gui/mrview/tool/connectome/connectome.cpp:2331:47: required from here src/connectome/connectome.h:63:32: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 63 | for (node_t row = 0; row != in.rows(); ++row) { src/connectome/connectome.h:64:38: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 64 | for (node_t col = row+1; col != in.cols(); ++col) { (154/505) [CC] tmp/src/surface/scalar.o (155/505) [CC] tmp/src/gui/dialog/progress.o (156/505) [CC] tmp/core/file/nifti2_utils.o moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o (157/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp (158/505) [CC] tmp/cmd/mrhistmatch.o (159/505) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o: In file included from /usr/include/string.h:494, from /usr/include/c++/9/cstring:42, from ./core/app.h:19, from ./core/header.h:22, from core/file/nifti2_utils.cpp:16: In function char* strncpy(char*, const char*, size_t), inlined from void MR::File::NIfTI2::write(nifti_2_header&, const MR::Header&, bool) at core/file/nifti2_utils.cpp:267:17: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:34: warning: char* __builtin_strncpy(char*, const char*, unsigned int) output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (160/505) [CC] tmp/cmd/5tt2vis.o (161/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (162/505) [CC] tmp/cmd/fixelconvert.o (163/505) [CC] tmp/cmd/mrcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayablg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/bitset.cpp -o tmp/core/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/shells.cpp -o tmp/src/dwi/shells.o e.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (164/505) [CC] tmp/core/bitset.o (165/505) [CC] tmp/cmd/connectomestats.o (166/505) [CC] tmp/cmd/tsfdivide.o (167/505) [CC] tmp/core/signal_handler.o (168/505) [CC] tmp/src/gui/mrview/tool/overlay.o (169/505) [CC] tmp/src/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/mat2vec.h:24, from src/connectome/enhance.h:25, from cmd/connectomestats.cpp:25: src/connectome/connectome.h: In instantiation of void MR::Connectome::to_ug++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o pper(MatrixType&) [with MatrixType = Eigen::Array]: cmd/connectomestats.cpp:223:47: required from here src/connectome/connectome.h:107:32: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 107 | for (node_t row = 0; row != in.rows(); ++row) { src/connectome/connectome.h:108:38: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 108 | for (node_t col = row+1; col != in.cols(); ++col) { src/connectome/connectome.h: In instantiation of bool MR::Connectome::is_directed(MatrixType&) [with MatrixType = Eigen::Array]: src/connectome/connectome.h:104:23: required from void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array] cmd/connectomestats.cpp:223:47: required from here src/connectome/connectome.h:63:32: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 63 | for (node_t row = 0; row != in.rows(); ++row) { src/connectome/connectome.h:64:38: warning: comparison of integer expressions of different signedness: MR::Connectome::node_t {aka unsigned int} and Eigen::Index {aka int} [-Wsign-compare] 64 | for (node_t col = row+1; col != in.cols(); ++col) { (170/505) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (171/505) [CC] tmp/src/dwi/directions/mask.o (172/505) [CC] tmp/src/gui/shview/icons.o (173/505) [CC] tmp/src/stats/permtest.o (174/505) [CC] tmp/cmd/dirflip.o (175/505) [CC] tmp/cmd/mrregister.o (176/505) [CC] tmp/cmd/tsfsmooth.o (177/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o t4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (178/505) [CC] tmp/src/dwi/tractography/GT/gt.o (179/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o (180/505) [CC] tmp/src/registration/transform/initialiser_helpers.o (181/505) [CC] tmp/cmd/tcktransform.o (182/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o view/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (183/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (184/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (185/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o (186/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (187/505) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (consg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o t mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (188/505) [CC] tmp/core/file/config.o (189/505) [CC] tmp/src/dwi/tractography/GT/particle.o (190/505) [CC] tmp/src/dwi/tractography/weights.o (191/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (192/505) [CC] tmp/core/formats/list.o (193/505) [CC] tmp/src/dwi/tractography/file_base.o (194/505) [CC] tmp/cmd/sh2power.o (195/505) [CC] tmp/core/exception.o (196/505) [CC] tmp/core/formats/mgz.o (197/505) [CC] tmp/cmd/tckstats.o (198/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (199/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (200/505) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projecg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o tion.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (201/505) [CC] tmp/core/image_io/pipe.o (202/505) [CC] tmp/core/image_io/tiff.o (203/505) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (204/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (205/505) [CC] tmp/core/math/stats/glm.o (206/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (207/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o (208/505) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (209/505) [CC] tmp/src/registration/transform/convergence_check.o (210/505) [CC] tmp/src/gui/dwi/renderer.o (211/505) [CC] tmp/src/gui/opengl/shader.o (212/505) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o: In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (213/505) [CC] tmp/core/adapter/reslice.o (214/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (215/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (216/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o (217/505) [CC] tmp/src/gui/lighting_dock_moc.o (218/505) [CC] tmp/core/file/json_utils.o (219/505) [CC] tmp/core/file/mmap.o (220/505) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o: core/file/mmap.cpp: In constructor MR::File::MMap::MMap(const MR::File::Entry&, bool, bool, int64_t): core/file/mmap.cpp:114:26: warning: comparison of integer expressions of different signedness: __fsword_t {aka int} and unsigned int [-Wsign-compare] 114 | if (fsbuf.f_type == 0xff534d42 /* CIFS */|| fsbuf.f_type == 0x6969 /* NFS */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~ (221/505) [CC] tmp/src/registration/linear.o (222/505) [CC] tmp/cmd/transformcalc.o (223/505) [CC] tmp/cmd/fixelcrop.o (224/505) [CC] tmp/core/image_io/default.o (225/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (226/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (227/505) [CC] tmp/src/gui/opengl/gl.o (228/505) [RCC] tmp/src/gui/mrview/icons.cpp (229/505) [CC] tmp/core/mrtrix.o (230/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (231/505) [CC] tmp/cmd/dcminfo.o (232/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o ::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (233/505) [CC] tmp/cmd/mrmath.o (234/505) [CC] tmp/src/gui/shapes/cube.o (235/505) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (236/505) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: In file included from /usr/include/string.h:494, from /usr/include/c++/9/cstring:42, from ./core/app.h:19, from ./core/header.h:22, from src/surface/mesh.h:23, from src/surface/mesh.cpp:16: In function char* strncpy(char*, const char*, size_t), inlined from void MR::Surface::Mesh::save_stl(const string&, bool) const at src/surface/mesh.cpp:660:17: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:34: warning: char* __builtin_strncpy(char*, const char*, unsigned int) specified bound 80 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (237/505) [CC] tmp/core/file/ofstream.o (238/505) [CC] tmp/src/exec_version.o (239/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (240/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (241/505) [CC] tmp/src/gui/dialog/list.o (242/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrviemoc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o w/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (243/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (244/505) [CC] tmp/src/gui/dwi/render_frame_moc.o (245/505) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o: In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (246/505) [CC] tmp/core/image_io/scratch.o (247/505) [CC] tmp/cmd/dcmedit.o (248/505) [CC] tmp/core/file/dicom/mapper.o (249/505) [CC] tmp/core/formats/mgh.o (250/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (251/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (252/505) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:210:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:255:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:366:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::veg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/datatype.cpp -o tmp/core/datatype.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/header.cpp -o tmp/core/header.o ERROR: (175/505) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o failed with output virtual memory exhausted: Operation not permitted ctor<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:19, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (253/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (254/505) [CC] tmp/core/axes.o (255/505) [CC] tmp/core/file/tiff.o (256/505) [CC] tmp/core/datatype.o (257/505) [CC] tmp/core/header.o make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1 make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' make: *** [debian/rules:33: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190622-1746 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 1899672 Build-Time: 919 Distribution: eoan Fail-Stage: build Host Architecture: i386 Install-Time: 60 Job: mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc Machine Architecture: amd64 Package: mrtrix3 Package-Time: 981 Source-Version: 3.0~rc3+git135-g2b8e7d0c2-3 Space: 1899672 Status: attempted Version: 3.0~rc3+git135-g2b8e7d0c2-3 -------------------------------------------------------------------------------- Finished at 20190622-1746 Build needed 00:16:21, 1899672k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=i386 PACKAGEBUILD-17110847 Scanning for processes to kill in build PACKAGEBUILD-17110847