https://launchpad.net/ubuntu/+archive/test-rebuild-20190906-lto/+build/17643591 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-038 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:10:16 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_177 python-lpbuildd_177 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Sep 22:40:41 ntpdate[1913]: adjust time server 10.211.37.1 offset -0.000591 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 --image-type chroot /home/buildd/filecache-default/6814d4bbdedc39163e5a7d0f0a1f6a039f04bcb5 Creating target for build PACKAGEBUILD-17643591 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 Starting target for build PACKAGEBUILD-17643591 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan main' 'deb http://ftpmaster.internal/ubuntu eoan main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-17643591 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 Adding trusted keys to build-PACKAGEBUILD-17643591 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 Updating target for build PACKAGEBUILD-17643591 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan InRelease [20.8 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main amd64 Packages [3792 B] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu eoan/main Translation-en [4848 B] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan/main amd64 Packages [1692 B] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan/main Translation-en [1760 B] Get:8 http://ftpmaster.internal/ubuntu eoan/main amd64 Packages [972 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main Translation-en [505 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/restricted amd64 Packages [14.4 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/restricted Translation-en [4836 B] Get:12 http://ftpmaster.internal/ubuntu eoan/universe amd64 Packages [8864 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5221 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/multiverse amd64 Packages [153 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/multiverse Translation-en [111 kB] Fetched 16.1 MB in 14s (1159 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: logsave The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp cpp-9 dpkg dpkg-dev e2fsprogs g++ g++-9 gcc gcc-9 gcc-9-base libapparmor1 libasan5 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-9-dev libgcc1 libgnutls30 libgomp1 libisl21 libitm1 liblsan0 libquadmath0 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libtsan0 libubsan1 linux-libc-dev login passwd 45 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 54.8 MB of archives. After this operation, 888 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main amd64 coreutils amd64 8.30-3ubuntu2 [1249 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan/main amd64 dpkg amd64 1.19.7ubuntu77 [2223 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan/main amd64 dpkg-dev all 1.19.7ubuntu77 [1793 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main amd64 login amd64 1:4.5-1.1ubuntu4 [264 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6-dev amd64 2.30-0ubuntu1 [2549 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/dpkg-lto/ubuntu eoan/main amd64 libdpkg-perl all 1.19.7ubuntu77 [1434 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-dev-bin amd64 2.30-0ubuntu1 [71.7 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main amd64 linux-libc-dev amd64 5.3.0-10.11 [1062 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main amd64 libcc1-0 amd64 9.2.1-8ubuntu1 [49.1 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-x86-64-linux-gnu amd64 2.32.51.20190905-0ubuntu1 [1639 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main amd64 libbinutils amd64 2.32.51.20190905-0ubuntu1 [474 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-common amd64 2.32.51.20190905-0ubuntu1 [203 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils amd64 2.32.51.20190905-0ubuntu1 [3416 B] Get:14 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9-base amd64 9.2.1-8ubuntu1 [19.2 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc1 amd64 1:9.2.1-8ubuntu1 [40.8 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main amd64 libgomp1 amd64 9.2.1-8ubuntu1 [89.3 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main amd64 libitm1 amd64 9.2.1-8ubuntu1 [28.1 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main amd64 libatomic1 amd64 9.2.1-8ubuntu1 [9220 B] Get:19 http://ftpmaster.internal/ubuntu eoan/main amd64 libasan5 amd64 9.2.1-8ubuntu1 [395 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main amd64 liblsan0 amd64 9.2.1-8ubuntu1 [139 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main amd64 libtsan0 amd64 9.2.1-8ubuntu1 [301 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main amd64 libubsan1 amd64 9.2.1-8ubuntu1 [130 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main amd64 libquadmath0 amd64 9.2.1-8ubuntu1 [146 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main amd64 g++-9 amd64 9.2.1-8ubuntu1 [10.2 MB] Get:25 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++-9-dev amd64 9.2.1-8ubuntu1 [1706 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc-9-dev amd64 9.2.1-8ubuntu1 [2360 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9 amd64 9.2.1-8ubuntu1 [9762 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main amd64 cpp-9 amd64 9.2.1-8ubuntu1 [8957 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++6 amd64 9.2.1-8ubuntu1 [512 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main amd64 libisl21 amd64 0.21-2 [576 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6 amd64 2.30-0ubuntu1 [2727 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-bin amd64 2.30-0ubuntu1 [636 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main amd64 libext2fs2 amd64 1.45.3-4ubuntu1 [181 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main amd64 e2fsprogs amd64 1.45.3-4ubuntu1 [526 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main amd64 logsave amd64 1.45.3-4ubuntu1 [9704 B] Get:36 http://ftpmaster.internal/ubuntu eoan/main amd64 passwd amd64 1:4.5-1.1ubuntu4 [815 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main amd64 libgnutls30 amd64 3.6.9-4build1 [792 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main amd64 libcom-err2 amd64 1.45.3-4ubuntu1 [9012 B] Get:39 http://ftpmaster.internal/ubuntu eoan/main amd64 libss2 amd64 1.45.3-4ubuntu1 [11.3 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main amd64 libapparmor1 amd64 2.13.3-5ubuntu1 [35.5 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu6 [127 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main amd64 libsqlite3-0 amd64 3.29.0-2 [536 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main amd64 g++ amd64 4:9.2.1-3.1ubuntu1 [1612 B] Get:44 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc amd64 4:9.2.1-3.1ubuntu1 [5216 B] Get:45 http://ftpmaster.internal/ubuntu eoan/main amd64 cpp amd64 4:9.2.1-3.1ubuntu1 [27.6 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main amd64 build-essential amd64 12.7ubuntu1 [4648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.8 MB in 4s (15.3 MB/s) (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_amd64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu1) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.7ubuntu77_amd64.deb ... Unpacking dpkg (1.19.7ubuntu77) over (1.19.7ubuntu1) ... Setting up dpkg (1.19.7ubuntu77) ... (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../login_1%3a4.5-1.1ubuntu4_amd64.deb ... Unpacking login (1:4.5-1.1ubuntu4) over (1:4.5-1.1ubuntu3) ... Setting up login (1:4.5-1.1ubuntu4) ... (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Preparing to unpack .../2-linux-libc-dev_5.3.0-10.11_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.3.0-10.11) over (5.2.0-15.16) ... Preparing to unpack .../3-libcc1-0_9.2.1-8ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../4-binutils-x86-64-linux-gnu_2.32.51.20190905-0ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.32.51.20190905-0ubuntu1) over (2.32.51.20190821-1ubuntu1) ... Preparing to unpack .../5-libbinutils_2.32.51.20190905-0ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.32.51.20190905-0ubuntu1) over (2.32.51.20190821-1ubuntu1) ... Preparing to unpack .../6-binutils-common_2.32.51.20190905-0ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.32.51.20190905-0ubuntu1) over (2.32.51.20190821-1ubuntu1) ... Preparing to unpack .../7-binutils_2.32.51.20190905-0ubuntu1_amd64.deb ... Unpacking binutils (2.32.51.20190905-0ubuntu1) over (2.32.51.20190821-1ubuntu1) ... Preparing to unpack .../8-gcc-9-base_9.2.1-8ubuntu1_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Setting up gcc-9-base:amd64 (9.2.1-8ubuntu1) ... (Reading database ... 12738 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9.2.1-8ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:9.2.1-8ubuntu1) over (1:9.2.1-6ubuntu1) ... Setting up libgcc1:amd64 (1:9.2.1-8ubuntu1) ... (Reading database ... 12738 files and directories currently installed.) Preparing to unpack .../00-libgomp1_9.2.1-8ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../01-libitm1_9.2.1-8ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../02-libatomic1_9.2.1-8ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../03-libasan5_9.2.1-8ubuntu1_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../04-liblsan0_9.2.1-8ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../05-libtsan0_9.2.1-8ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../06-libubsan1_9.2.1-8ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../07-libquadmath0_9.2.1-8ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../08-g++-9_9.2.1-8ubuntu1_amd64.deb ... Unpacking g++-9 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../09-libstdc++-9-dev_9.2.1-8ubuntu1_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../10-libgcc-9-dev_9.2.1-8ubuntu1_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../11-gcc-9_9.2.1-8ubuntu1_amd64.deb ... Unpacking gcc-9 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../12-cpp-9_9.2.1-8ubuntu1_amd64.deb ... Unpacking cpp-9 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../13-libstdc++6_9.2.1-8ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (9.2.1-8ubuntu1) over (9.2.1-6ubuntu1) ... Setting up libstdc++6:amd64 (9.2.1-8ubuntu1) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../libisl21_0.21-2_amd64.deb ... Unpacking libisl21:amd64 (0.21-2) over (0.21-1) ... Preparing to unpack .../libc6_2.30-0ubuntu1_amd64.deb ... Unpacking libc6:amd64 (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Setting up libc6:amd64 (2.30-0ubuntu1) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../libc-bin_2.30-0ubuntu1_amd64.deb ... Unpacking libc-bin (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Setting up libc-bin (2.30-0ubuntu1) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.45.3-4ubuntu1_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.3-4ubuntu1) over (1.45.2-1ubuntu1) ... Setting up libext2fs2:amd64 (1.45.3-4ubuntu1) ... (Reading database ... 12742 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.3-4ubuntu1_amd64.deb ... Unpacking e2fsprogs (1.45.3-4ubuntu1) over (1.45.2-1ubuntu1) ... Selecting previously unselected package logsave. Preparing to unpack .../logsave_1.45.3-4ubuntu1_amd64.deb ... Unpacking logsave (1.45.3-4ubuntu1) ... Preparing to unpack .../passwd_1%3a4.5-1.1ubuntu4_amd64.deb ... Unpacking passwd (1:4.5-1.1ubuntu4) over (1:4.5-1.1ubuntu3) ... Setting up passwd (1:4.5-1.1ubuntu4) ... (Reading database ... 12745 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.9-4build1_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.9-4build1) over (3.6.9-4) ... Setting up libgnutls30:amd64 (3.6.9-4build1) ... (Reading database ... 12745 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.45.3-4ubuntu1_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.3-4ubuntu1) over (1.45.2-1ubuntu1) ... Preparing to unpack .../01-libss2_1.45.3-4ubuntu1_amd64.deb ... Unpacking libss2:amd64 (1.45.3-4ubuntu1) over (1.45.2-1ubuntu1) ... Preparing to unpack .../02-libapparmor1_2.13.3-5ubuntu1_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.3-5ubuntu1) over (2.13.2-9ubuntu7) ... Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.155-2ubuntu6_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.155-2ubuntu6) over (2:1.02.155-2ubuntu5) ... Preparing to unpack .../04-libsqlite3-0_3.29.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-2) over (3.29.0-1) ... Preparing to unpack .../05-g++_4%3a9.2.1-3.1ubuntu1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1ubuntu1) over (4:9.2.1-2ubuntu2) ... Preparing to unpack .../06-gcc_4%3a9.2.1-3.1ubuntu1_amd64.deb ... Unpacking gcc (4:9.2.1-3.1ubuntu1) over (4:9.2.1-2ubuntu2) ... Preparing to unpack .../07-cpp_4%3a9.2.1-3.1ubuntu1_amd64.deb ... Unpacking cpp (4:9.2.1-3.1ubuntu1) over (4:9.2.1-2ubuntu2) ... Preparing to unpack .../08-dpkg-dev_1.19.7ubuntu77_all.deb ... Unpacking dpkg-dev (1.19.7ubuntu77) over (1.19.7ubuntu1) ... Preparing to unpack .../09-libdpkg-perl_1.19.7ubuntu77_all.deb ... Unpacking libdpkg-perl (1.19.7ubuntu77) over (1.19.7ubuntu1) ... Preparing to unpack .../10-build-essential_12.7ubuntu1_amd64.deb ... Unpacking build-essential (12.7ubuntu1) over (12.6ubuntu2) ... Setting up libisl21:amd64 (0.21-2) ... Setting up libapparmor1:amd64 (2.13.3-5ubuntu1) ... Setting up libsqlite3-0:amd64 (3.29.0-2) ... Setting up binutils-common:amd64 (2.32.51.20190905-0ubuntu1) ... Setting up linux-libc-dev:amd64 (5.3.0-10.11) ... Setting up libcom-err2:amd64 (1.45.3-4ubuntu1) ... Setting up libgomp1:amd64 (9.2.1-8ubuntu1) ... Setting up libasan5:amd64 (9.2.1-8ubuntu1) ... Setting up libquadmath0:amd64 (9.2.1-8ubuntu1) ... Setting up libatomic1:amd64 (9.2.1-8ubuntu1) ... Setting up libss2:amd64 (1.45.3-4ubuntu1) ... Setting up libdpkg-perl (1.19.7ubuntu77) ... Setting up logsave (1.45.3-4ubuntu1) ... Setting up libubsan1:amd64 (9.2.1-8ubuntu1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.155-2ubuntu6) ... Setting up cpp-9 (9.2.1-8ubuntu1) ... Setting up libbinutils:amd64 (2.32.51.20190905-0ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu1) ... Setting up libcc1-0:amd64 (9.2.1-8ubuntu1) ... Setting up liblsan0:amd64 (9.2.1-8ubuntu1) ... Setting up libitm1:amd64 (9.2.1-8ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.32.51.20190905-0ubuntu1) ... Setting up libtsan0:amd64 (9.2.1-8ubuntu1) ... Setting up e2fsprogs (1.45.3-4ubuntu1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/e2scrub.conf ... Setting up binutils (2.32.51.20190905-0ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu77) ... Setting up libgcc-9-dev:amd64 (9.2.1-8ubuntu1) ... Setting up cpp (4:9.2.1-3.1ubuntu1) ... Setting up libc6-dev:amd64 (2.30-0ubuntu1) ... Setting up gcc-9 (9.2.1-8ubuntu1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-8ubuntu1) ... Setting up gcc (4:9.2.1-3.1ubuntu1) ... Setting up g++-9 (9.2.1-8ubuntu1) ... Setting up g++ (4:9.2.1-3.1ubuntu1) ... Setting up build-essential (12.7ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17643591 amd64 eoan -c chroot:build-PACKAGEBUILD-17643591 --arch=amd64 --dist=eoan --nolog -A dipy_0.14.0-1.dsc Initiating build PACKAGEBUILD-17643591 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:10:16 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-038.buildd +==============================================================================+ | dipy 0.14.0-1 (amd64) 14 Sep 2019 22:41 | +==============================================================================+ Package: dipy Version: 0.14.0-1 Source Version: 0.14.0-1 Distribution: eoan Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/dipy-VgxFoq/dipy-0.14.0' with '<>' I: NOTICE: Log filtering will replace 'build/dipy-VgxFoq' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17643591/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dipy_0.14.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sauh8v/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-sauh8v/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sauh8v/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sauh8v/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sauh8v/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-sauh8v/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (277 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sauh8v/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12754 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-numpydoc, python-nose, python-nibabel (>= 2.1.0), libgomp1 Filtered Build-Depends: debhelper (>= 9), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-numpydoc, python-nose, python-nibabel (>= 2.1.0), libgomp1 dpkg-deb: building package 'sbuild-build-depends-dipy-dummy' in '/<>/resolver-QuADv_/apt_archive/sbuild-build-depends-dipy-dummy.deb'. Ign:1 copy:/<>/resolver-QuADv_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-QuADv_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-QuADv_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-QuADv_/apt_archive ./ Sources [292 B] Get:5 copy:/<>/resolver-QuADv_/apt_archive ./ Packages [612 B] Fetched 3023 B in 0s (278 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dipy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libhdf5-103 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-attr python-babel python-babel-localedata python-backports.functools-lru-cache python-bz2file python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-h5py python-idna python-imagesize python-jinja2 python-kiwisolver python-markupsafe python-matplotlib python-matplotlib2-data python-minimal python-nibabel python-nose python-numpy python-numpydoc python-packaging python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal sgml-base sphinx-common ttf-bitstream-vera xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-attr-doc python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gi python-gobject-2 python-matplotlib2-doc python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-mock python-coverage python-nose-doc gfortran python-pytest python-numpy-dbg python-numpy-doc python-setuptools python-pygments-doc python-pyparsing-doc python-cryptography python-openssl python-socks python-scipy-doc imagemagick-6.q16 latexmk libjs-mathjax python-sphinx-rtd-theme python-stemmer sphinx-doc texlive-fonts-recommended texlive-plain-generic python-ntlm python2-doc python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-tk python-dicom python-fuse python-enum34 python-cryptography python-ipaddress python-openssl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libhdf5-103 libicu63 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-attr python-babel python-babel-localedata python-backports.functools-lru-cache python-bz2file python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-h5py python-idna python-imagesize python-jinja2 python-kiwisolver python-markupsafe python-matplotlib python-matplotlib2-data python-minimal python-nibabel python-nose python-numpy python-numpydoc python-packaging python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-dipy-dummy sgml-base sphinx-common ttf-bitstream-vera xml-core 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After this operation, 359 MB of additional disk space will be used. Get:1 copy:/<>/resolver-QuADv_/apt_archive ./ sbuild-build-depends-dipy-dummy 0.invalid.0 [944 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 groff-base amd64 1.22.4-3 [862 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main amd64 libpipeline1 amd64 1.5.1-2 [25.9 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main amd64 man-db amd64 2.8.7-3 [1113 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2.7-minimal amd64 2.7.16-4 [335 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2.7-minimal amd64 2.7.16-4 [1292 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2-minimal amd64 2.7.16-1 [27.8 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-minimal amd64 2.7.16-1 [5996 B] Get:12 http://ftpmaster.internal/ubuntu eoan/main amd64 mime-support all 3.63ubuntu1 [30.8 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main amd64 libexpat1 amd64 2.2.7-2 [73.8 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2.7-stdlib amd64 2.7.16-4 [1882 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2.7 amd64 2.7.16-4 [244 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2-stdlib amd64 2.7.16-1 [7432 B] Get:17 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython-stdlib amd64 2.7.16-1 [5828 B] Get:18 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2 amd64 2.7.16-1 [26.5 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/universe amd64 python amd64 2.7.16-1 [7836 B] Get:20 http://ftpmaster.internal/ubuntu eoan/main amd64 sgml-base all 1.29 [12.3 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main amd64 libmagic-mgc amd64 1:5.37-5 [209 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main amd64 libmagic1 amd64 1:5.37-5 [75.4 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main amd64 file amd64 1:5.37-5 [23.2 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main amd64 libelf1 amd64 0.176-1.1 [44.1 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main amd64 libglib2.0-0 amd64 2.62.0-1 [1264 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main amd64 libicu63 amd64 63.2-2 [8294 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main amd64 autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main amd64 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/universe amd64 cython amd64 0.29.10-0ubuntu1 [1326 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main amd64 libtool all 2.4.6-11 [194 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main amd64 dh-autoreconf all 19 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main amd64 libarchive-zip-perl all 1.65-1 [83.6 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:40 http://ftpmaster.internal/ubuntu eoan/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [16.2 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main amd64 dh-strip-nondeterminism all 1.6.0-1 [5208 B] Get:42 http://ftpmaster.internal/ubuntu eoan/main amd64 dwz amd64 0.13-1 [80.0 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main amd64 po-debconf all 1.0.21 [233 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main amd64 debhelper all 12.4ubuntu1 [910 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main amd64 docutils-common all 0.15.2+dfsg-1 [156 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/universe amd64 fonts-lyx all 2.3.3-1 [154 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main amd64 libblas3 amd64 3.8.0-2 [138 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main amd64 libexpat1-dev amd64 2.2.7-2 [116 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main amd64 libfreetype6 amd64 2.9.1-4 [335 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main amd64 libgfortran5 amd64 9.2.1-8ubuntu1 [642 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] Get:57 http://ftpmaster.internal/ubuntu eoan/universe amd64 libhdf5-103 amd64 1.10.4+repack-10 [1299 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main amd64 libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main amd64 libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main amd64 libjs-sphinxdoc all 1.8.5-3 [96.5 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main amd64 liblapack3 amd64 3.8.0-2 [2099 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-7 [29.4 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2.7 amd64 2.7.16-4 [1036 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2.7-dev amd64 2.7.16-4 [27.2 MB] Get:66 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython2-dev amd64 2.7.16-1 [7492 B] Get:67 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython-dev amd64 2.7.16-1 [5884 B] Get:68 http://ftpmaster.internal/ubuntu eoan/universe amd64 libpython-all-dev amd64 2.7.16-1 [1112 B] Get:69 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-all amd64 2.7.16-1 [1088 B] Get:70 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2.7-dev amd64 2.7.16-4 [277 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/universe amd64 python2-dev amd64 2.7.16-1 [1260 B] Get:72 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-dev amd64 2.7.16-1 [1232 B] Get:73 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-all-dev amd64 2.7.16-1 [1112 B] Get:74 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-attr all 18.2.0-1 [29.6 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-pkg-resources all 41.1.0-1 [129 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-tz all 2019.2-1 [31.1 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-babel all 2.6.0+dfsg.1-1 [84.1 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-backports.functools-lru-cache all 1.5-3 [6424 B] Get:80 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-bz2file all 0.98-2 [7904 B] Get:81 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-certifi all 2018.8.24-1 [140 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-chardet all 3.0.4-4 [80.4 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-six all 1.12.0-2 [11.6 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-cycler all 0.10.0-1 [7520 B] Get:85 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-dateutil all 2.7.3-3 [75.5 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-decorator all 4.3.0-1.1 [9524 B] Get:87 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-roman all 2.0.0-3 [8548 B] Get:88 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-docutils all 0.15.2+dfsg-1 [368 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-numpy amd64 1:1.16.2-1ubuntu1 [2088 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-h5py amd64 2.9.0-3 [779 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-idna all 2.6-2 [32.5 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-imagesize all 1.0.0-1 [4928 B] Get:93 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-markupsafe amd64 1.1.0-1 [13.1 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-jinja2 all 2.10-2ubuntu1 [94.9 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-kiwisolver amd64 1.0.1-2build2 [61.9 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-matplotlib2-data all 2.2.3-6 [3774 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-pyparsing all 2.2.0+dfsg1-2 [52.1 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-subprocess32 amd64 3.5.3-1 [26.8 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-matplotlib amd64 2.2.3-6 [4229 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-nose all 1.3.7-4 [116 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-typing all 3.6.6-1 [22.8 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main amd64 sphinx-common all 1.8.5-3 [501 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-alabaster all 0.7.8-1 [18.4 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-packaging all 19.1-2 [21.6 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-pygments all 2.3.1+dfsg-1ubuntu1 [582 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-urllib3 all 1.24.1-1ubuntu1 [83.7 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-requests all 2.21.0-1 [47.0 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-sphinx all 1.8.5-3 [483 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-numpydoc all 0.7.0-1 [18.3 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-scipy amd64 1.2.2-4 [10.8 MB] Get:112 http://ftpmaster.internal/ubuntu eoan/universe amd64 python-nibabel all 2.5.0-1 [2647 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.4 MB in 4s (22.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12754 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-4_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-4) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-4_amd64.deb ... Unpacking python2.7-minimal (2.7.16-4) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../10-mime-support_3.63ubuntu1_all.deb ... Unpacking mime-support (3.63ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../11-libexpat1_2.2.7-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.7-2) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../12-libpython2.7-stdlib_2.7.16-4_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-4) ... Selecting previously unselected package python2.7. Preparing to unpack .../13-python2.7_2.7.16-4_amd64.deb ... Unpacking python2.7 (2.7.16-4) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../14-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../15-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-4) ... Setting up python2.7-minimal (2.7.16-4) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... 14115 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 14148 files and directories currently installed.) Preparing to unpack .../00-python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../05-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../06-libglib2.0-0_2.62.0-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.62.0-1) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../07-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../08-libxml2_2.9.4+dfsg1-7ubuntu3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.1-4ubuntu3_all.deb ... Unpacking automake (1:1.16.1-4ubuntu3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cython. Preparing to unpack .../16-cython_0.29.10-0ubuntu1_amd64.deb ... Unpacking cython (0.29.10-0ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.65-1_all.deb ... Unpacking libarchive-zip-perl (1.65-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.6.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../24-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.4ubuntu1_all.deb ... Unpacking debhelper (12.4ubuntu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../29-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../30-docutils-common_0.15.2+dfsg-1_all.deb ... Unpacking docutils-common (0.15.2+dfsg-1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../31-fonts-lyx_2.3.3-1_all.deb ... Unpacking fonts-lyx (2.3.3-1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../32-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../33-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../34-libexpat1-dev_2.2.7-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.7-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../35-libfreetype6_2.9.1-4_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../36-libgfortran5_9.2.1-8ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (9.2.1-8ubuntu1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../37-libsz2_1.0.4-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.4-1) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../38-libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../39-libjs-jquery_3.3.1~dfsg-3_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../40-libjs-jquery-ui_1.12.1+dfsg-5_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-5) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../41-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../42-libjs-sphinxdoc_1.8.5-3_all.deb ... Unpacking libjs-sphinxdoc (1.8.5-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../43-liblapack3_3.8.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.8.0-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../44-liblbfgsb0_3.0+dfsg.3-7_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../45-libpython2.7_2.7.16-4_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.16-4) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../46-libpython2.7-dev_2.7.16-4_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.16-4) ... Selecting previously unselected package libpython2-dev:amd64. Preparing to unpack .../47-libpython2-dev_2.7.16-1_amd64.deb ... Unpacking libpython2-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../48-libpython-dev_2.7.16-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-all-dev:amd64. Preparing to unpack .../49-libpython-all-dev_2.7.16-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.16-1) ... Selecting previously unselected package python-all. Preparing to unpack .../50-python-all_2.7.16-1_amd64.deb ... Unpacking python-all (2.7.16-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../51-python2.7-dev_2.7.16-4_amd64.deb ... Unpacking python2.7-dev (2.7.16-4) ... Selecting previously unselected package python2-dev. Preparing to unpack .../52-python2-dev_2.7.16-1_amd64.deb ... Unpacking python2-dev (2.7.16-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../53-python-dev_2.7.16-1_amd64.deb ... Unpacking python-dev (2.7.16-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../54-python-all-dev_2.7.16-1_amd64.deb ... Unpacking python-all-dev (2.7.16-1) ... Selecting previously unselected package python-attr. Preparing to unpack .../55-python-attr_18.2.0-1_all.deb ... Unpacking python-attr (18.2.0-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../56-python-babel-localedata_2.6.0+dfsg.1-1_all.deb ... Unpacking python-babel-localedata (2.6.0+dfsg.1-1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../57-python-pkg-resources_41.1.0-1_all.deb ... Unpacking python-pkg-resources (41.1.0-1) ... Selecting previously unselected package python-tz. Preparing to unpack .../58-python-tz_2019.2-1_all.deb ... Unpacking python-tz (2019.2-1) ... Selecting previously unselected package python-babel. Preparing to unpack .../59-python-babel_2.6.0+dfsg.1-1_all.deb ... Unpacking python-babel (2.6.0+dfsg.1-1) ... Selecting previously unselected package python-backports.functools-lru-cache. Preparing to unpack .../60-python-backports.functools-lru-cache_1.5-3_all.deb ... Unpacking python-backports.functools-lru-cache (1.5-3) ... Selecting previously unselected package python-bz2file. Preparing to unpack .../61-python-bz2file_0.98-2_all.deb ... Unpacking python-bz2file (0.98-2) ... Selecting previously unselected package python-certifi. Preparing to unpack .../62-python-certifi_2018.8.24-1_all.deb ... Unpacking python-certifi (2018.8.24-1) ... Selecting previously unselected package python-chardet. Preparing to unpack .../63-python-chardet_3.0.4-4_all.deb ... Unpacking python-chardet (3.0.4-4) ... Selecting previously unselected package python-six. Preparing to unpack .../64-python-six_1.12.0-2_all.deb ... Unpacking python-six (1.12.0-2) ... Selecting previously unselected package python-cycler. Preparing to unpack .../65-python-cycler_0.10.0-1_all.deb ... Unpacking python-cycler (0.10.0-1) ... Selecting previously unselected package python-dateutil. Preparing to unpack .../66-python-dateutil_2.7.3-3_all.deb ... Unpacking python-dateutil (2.7.3-3) ... Selecting previously unselected package python-decorator. Preparing to unpack .../67-python-decorator_4.3.0-1.1_all.deb ... Unpacking python-decorator (4.3.0-1.1) ... Selecting previously unselected package python-roman. Preparing to unpack .../68-python-roman_2.0.0-3_all.deb ... Unpacking python-roman (2.0.0-3) ... Selecting previously unselected package python-docutils. Preparing to unpack .../69-python-docutils_0.15.2+dfsg-1_all.deb ... Unpacking python-docutils (0.15.2+dfsg-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../70-python-numpy_1%3a1.16.2-1ubuntu1_amd64.deb ... Unpacking python-numpy (1:1.16.2-1ubuntu1) ... Selecting previously unselected package python-h5py. Preparing to unpack .../71-python-h5py_2.9.0-3_amd64.deb ... Unpacking python-h5py (2.9.0-3) ... Selecting previously unselected package python-idna. Preparing to unpack .../72-python-idna_2.6-2_all.deb ... Unpacking python-idna (2.6-2) ... Selecting previously unselected package python-imagesize. Preparing to unpack .../73-python-imagesize_1.0.0-1_all.deb ... Unpacking python-imagesize (1.0.0-1) ... Selecting previously unselected package python-markupsafe. Preparing to unpack .../74-python-markupsafe_1.1.0-1_amd64.deb ... Unpacking python-markupsafe (1.1.0-1) ... Selecting previously unselected package python-jinja2. Preparing to unpack .../75-python-jinja2_2.10-2ubuntu1_all.deb ... Unpacking python-jinja2 (2.10-2ubuntu1) ... Selecting previously unselected package python-kiwisolver. Preparing to unpack .../76-python-kiwisolver_1.0.1-2build2_amd64.deb ... Unpacking python-kiwisolver (1.0.1-2build2) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../77-ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Selecting previously unselected package python-matplotlib2-data. Preparing to unpack .../78-python-matplotlib2-data_2.2.3-6_all.deb ... Unpacking python-matplotlib2-data (2.2.3-6) ... Selecting previously unselected package python-pyparsing. Preparing to unpack .../79-python-pyparsing_2.2.0+dfsg1-2_all.deb ... Unpacking python-pyparsing (2.2.0+dfsg1-2) ... Selecting previously unselected package python-subprocess32. Preparing to unpack .../80-python-subprocess32_3.5.3-1_amd64.deb ... Unpacking python-subprocess32 (3.5.3-1) ... Selecting previously unselected package python-matplotlib. Preparing to unpack .../81-python-matplotlib_2.2.3-6_amd64.deb ... Unpacking python-matplotlib (2.2.3-6) ... Selecting previously unselected package python-nose. Preparing to unpack .../82-python-nose_1.3.7-4_all.deb ... Unpacking python-nose (1.3.7-4) ... Selecting previously unselected package python-typing. Preparing to unpack .../83-python-typing_3.6.6-1_all.deb ... Unpacking python-typing (3.6.6-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../84-sphinx-common_1.8.5-3_all.deb ... Unpacking sphinx-common (1.8.5-3) ... Selecting previously unselected package python-alabaster. Preparing to unpack .../85-python-alabaster_0.7.8-1_all.deb ... Unpacking python-alabaster (0.7.8-1) ... Selecting previously unselected package python-packaging. Preparing to unpack .../86-python-packaging_19.1-2_all.deb ... Unpacking python-packaging (19.1-2) ... Selecting previously unselected package python-pygments. Preparing to unpack .../87-python-pygments_2.3.1+dfsg-1ubuntu1_all.deb ... Unpacking python-pygments (2.3.1+dfsg-1ubuntu1) ... Selecting previously unselected package python-urllib3. Preparing to unpack .../88-python-urllib3_1.24.1-1ubuntu1_all.deb ... Unpacking python-urllib3 (1.24.1-1ubuntu1) ... Selecting previously unselected package python-requests. Preparing to unpack .../89-python-requests_2.21.0-1_all.deb ... Unpacking python-requests (2.21.0-1) ... Selecting previously unselected package python-sphinx. Preparing to unpack .../90-python-sphinx_1.8.5-3_all.deb ... Unpacking python-sphinx (1.8.5-3) ... Selecting previously unselected package python-numpydoc. Preparing to unpack .../91-python-numpydoc_0.7.0-1_all.deb ... Unpacking python-numpydoc (0.7.0-1) ... Selecting previously unselected package python-scipy. Preparing to unpack .../92-python-scipy_1.2.2-4_amd64.deb ... Unpacking python-scipy (1.2.2-4) ... Selecting previously unselected package python-nibabel. Preparing to unpack .../93-python-nibabel_2.5.0-1_all.deb ... Unpacking python-nibabel (2.5.0-1) ... Selecting previously unselected package sbuild-build-depends-dipy-dummy. Preparing to unpack .../94-sbuild-build-depends-dipy-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-dipy-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.7-2) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.63ubuntu1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.65-1) ... Setting up libglib2.0-0:amd64 (2.62.0-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.3-1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-5) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-4) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.7-2) ... Setting up libfreetype6:amd64 (2.9.1-4) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:amd64 (9.2.1-8ubuntu1) ... Setting up python-matplotlib2-data (2.2.3-6) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.29) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libpython2.7:amd64 (2.7.16-4) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-4) ... Setting up python2.7 (2.7.16-4) ... Setting up libtool (2.4.6-11) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up m4 (1.4.18-2) ... Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Setting up python2.7-dev (2.7.16-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up cython (0.29.10-0ubuntu1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2-dev (2.7.16-1) ... Setting up python-typing (3.6.6-1) ... Setting up python-pkg-resources (41.1.0-1) ... Setting up python-all (2.7.16-1) ... Setting up python-attr (18.2.0-1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python-certifi (2018.8.24-1) ... Setting up python-pygments (2.3.1+dfsg-1ubuntu1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python-six (1.12.0-2) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-dateutil (2.7.3-3) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python-imagesize (1.0.0-1) ... Setting up python-idna (2.6-2) ... Setting up sphinx-common (1.8.5-3) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python-markupsafe (1.1.0-1) ... Setting up python-roman (2.0.0-3) ... Setting up python-tz (2019.2-1) ... Setting up python-kiwisolver (1.0.1-2build2) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-chardet (3.0.4-4) ... Setting up python-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-bz2file (0.98-2) ... Setting up python-dev (2.7.16-1) ... Setting up python-packaging (19.1-2) ... Setting up python-urllib3 (1.24.1-1ubuntu1) ... Setting up libpython-all-dev:amd64 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1ubuntu1) ... Setting up python-nose (1.3.7-4) ... Setting up po-debconf (1.0.21) ... Setting up python-cycler (0.10.0-1) ... Setting up python-jinja2 (2.10-2ubuntu1) ... Setting up python-requests (2.21.0-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up python-scipy (1.2.2-4) ... Setting up python-h5py (2.9.0-3) ... Setting up python-nibabel (2.5.0-1) ... Setting up python-matplotlib (2.2.3-6) ... Setting up debhelper (12.4ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Processing triggers for libc-bin (2.30-0ubuntu1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.15.2+dfsg-1) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.15.2+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.8.5-3) ... update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python-numpydoc (0.7.0-1) ... Setting up sbuild-build-depends-dipy-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-161-generic amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190905-0ubuntu1 dpkg-dev_1.19.7ubuntu77 g++-9_9.2.1-8ubuntu1 gcc-9_9.2.1-8ubuntu1 libc6-dev_2.30-0ubuntu1 libstdc++-9-dev_9.2.1-8ubuntu1 libstdc++6_9.2.1-8ubuntu1 linux-libc-dev_5.3.0-10.11 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu6 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190905-0ubuntu1 binutils-common_2.32.51.20190905-0ubuntu1 binutils-x86-64-linux-gnu_2.32.51.20190905-0ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.7ubuntu1 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-8ubuntu1 cython_0.29.10-0ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.4ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 docutils-common_0.15.2+dfsg-1 dpkg_1.19.7ubuntu77 dpkg-dev_1.19.7ubuntu77 dwz_0.13-1 e2fsprogs_1.45.3-4ubuntu1 fakeroot_1.23-1 fdisk_2.34-0.1ubuntu2 file_1:5.37-5 findutils_4.6.0+git+20190209-2ubuntu1 fonts-lyx_2.3.3-1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-8ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-8ubuntu1 gcc-9-base_9.2.1-8ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu3 hostname_3.22 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libaec0_1.0.4-1 libapparmor1_2.13.3-5ubuntu1 libapt-pkg5.90_1.9.3 libarchive-zip-perl_1.65-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-8ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-8ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2ubuntu1 libaudit1_1:2.8.5-2ubuntu1 libbinutils_2.32.51.20190905-0ubuntu1 libblas3_3.8.0-2 libblkid1_2.34-0.1ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.30-0ubuntu1 libc-dev-bin_2.30-0ubuntu1 libc6_2.30-0ubuntu1 libc6-dev_2.30-0ubuntu1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.2.1-8ubuntu1 libcom-err2_1.45.3-4ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.0-3ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu6 libdpkg-perl_1.19.7ubuntu77 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.45.3-4ubuntu1 libfakeroot_1.23-1 libfdisk1_2.34-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libfreetype6_2.9.1-4 libgcc-9-dev_9.2.1-8ubuntu1 libgcc1_1:9.2.1-8ubuntu1 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8ubuntu1 libglib2.0-0_2.62.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4build1 libgomp1_9.2.1-8ubuntu1 libgpg-error0_1.36-7 libhdf5-103_1.10.4+repack-10 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-1 libip4tc2_1.8.3-2ubuntu2 libisl21_0.21-2 libitm1_9.2.1-8ubuntu1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.8.5-3 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-4 libkmod2_26-1ubuntu1 liblapack3_3.8.0-2 liblbfgsb0_3.0+dfsg.3-7 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblsan0_9.2.1-8ubuntu1 liblz4-1_1.9.1-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1ubuntu1 libncursesw6_6.1+20190803-1ubuntu1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.16-4 libpython2.7-dev_2.7.16-4 libpython2.7-minimal_2.7.16-4 libpython2.7-stdlib_2.7.16-4 libquadmath0_9.2.1-8ubuntu1 libreadline8_8.0-3 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.29.0-2 libss2_1.45.3-4ubuntu1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-8ubuntu1 libstdc++6_9.2.1-8ubuntu1 libsub-override-perl_0.09-2 libsystemd0_241-7ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1ubuntu1 libtool_2.4.6-11 libtsan0_9.2.1-8ubuntu1 libubsan1_9.2.1-8ubuntu1 libuchardet0_0.0.6-3 libudev1_241-7ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.0-10.11 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu1 lsb-base_11.0.1ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17ubuntu3 mime-support_3.63ubuntu1 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20190803-1ubuntu1 ncurses-bin_6.1+20190803-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python_2.7.16-1 python-alabaster_0.7.8-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-attr_18.2.0-1 python-babel_2.6.0+dfsg.1-1 python-babel-localedata_2.6.0+dfsg.1-1 python-backports.functools-lru-cache_1.5-3 python-bz2file_0.98-2 python-certifi_2018.8.24-1 python-chardet_3.0.4-4 python-cycler_0.10.0-1 python-dateutil_2.7.3-3 python-decorator_4.3.0-1.1 python-dev_2.7.16-1 python-docutils_0.15.2+dfsg-1 python-h5py_2.9.0-3 python-idna_2.6-2 python-imagesize_1.0.0-1 python-jinja2_2.10-2ubuntu1 python-kiwisolver_1.0.1-2build2 python-markupsafe_1.1.0-1 python-matplotlib_2.2.3-6 python-matplotlib2-data_2.2.3-6 python-minimal_2.7.16-1 python-nibabel_2.5.0-1 python-nose_1.3.7-4 python-numpy_1:1.16.2-1ubuntu1 python-numpydoc_0.7.0-1 python-packaging_19.1-2 python-pkg-resources_41.1.0-1 python-pygments_2.3.1+dfsg-1ubuntu1 python-pyparsing_2.2.0+dfsg1-2 python-requests_2.21.0-1 python-roman_2.0.0-3 python-scipy_1.2.2-4 python-six_1.12.0-2 python-sphinx_1.8.5-3 python-subprocess32_3.5.3-1 python-typing_3.6.6-1 python-tz_2019.2-1 python-urllib3_1.24.1-1ubuntu1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-4 python2.7-dev_2.7.16-4 python2.7-minimal_2.7.16-4 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dipy-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.8.5-3 systemd_241-7ubuntu1 systemd-sysv_241-7ubuntu1 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019b-2 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu2 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue May 15 15:20:59 2018 UTC gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dipy_0.14.0-1.dsc dpkg-source: info: extracting dipy in dipy-0.14.0 dpkg-source: info: unpacking dipy_0.14.0.orig.tar.gz dpkg-source: info: unpacking dipy_0.14.0.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.14.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17643591 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17643591 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17643591 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 0.14.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from dipy-0.14.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ fakeroot debian/rules clean dh clean --buildsystem=python_distutils --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find dipy -iname *.c | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f rm -f pyx-stamps dh_auto_clean override_dh_auto_clean dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_clean: This feature will be removed in compat 12. python setup.py clean -a running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/<>/doc' rm -rf reference/*.rst cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[2]: [Makefile:32: clean] Error 1 (ignored) make[2]: Leaving directory '/<>/doc' dh_clean make[1]: Leaving directory '/<>' debian/rules build dh build --buildsystem=python_distutils --with python2 dh_update_autotools_config -O--buildsystem=python_distutils dh_auto_configure -O--buildsystem=python_distutils dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_configure: This feature will be removed in compat 12. debian/rules override_dh_auto_build make[1]: Entering directory '/<>' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.25.1" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : dh_auto_build dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. python setup.py build --force running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-x86_64-2.7/dipy copying dipy/__init__.py -> build/lib.linux-x86_64-2.7/dipy copying dipy/info.py -> build/lib.linux-x86_64-2.7/dipy creating build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.linux-x86_64-2.7/dipy/tests creating build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.linux-x86_64-2.7/dipy/align creating build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_whole_brain_slr.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.linux-x86_64-2.7/dipy/align/tests creating build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/wavelet.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-x86_64-2.7/dipy/core creating build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-x86_64-2.7/dipy/core/tests creating build/lib.linux-x86_64-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.linux-x86_64-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.linux-x86_64-2.7/dipy/direction creating build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_pmf.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_bootstrap_direction_getter.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests creating build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking creating build/lib.linux-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local creating build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tracking.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_interpolation.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests creating build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_fbc.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_localtrack.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests creating build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks creating build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dki_micro.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/fwdti.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/ivim.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/forecast.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-x86_64-2.7/dipy/reconst creating build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks creating build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_forecast.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki_micro.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_ivim.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_fwdti.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests creating build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/streamline.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/vtk.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/peaks.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/image.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-x86_64-2.7/dipy/io creating build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_peaks.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_streamline.py -> build/lib.linux-x86_64-2.7/dipy/io/tests creating build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/ui.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/actor.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/interactor.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/window.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/widget.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/utils.py -> build/lib.linux-x86_64-2.7/dipy/viz creating build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_utils.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_ui.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_widgets.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_actors.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_window.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_interactor.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests creating build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-x86_64-2.7/dipy/testing creating build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests creating build/lib.linux-x86_64-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-x86_64-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-x86_64-2.7/dipy/boots creating build/lib.linux-x86_64-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-x86_64-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-x86_64-2.7/dipy/data creating build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-x86_64-2.7/dipy/utils package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) creating build/lib.linux-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_fetcher.py -> build/lib.linux-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_data.py -> build/lib.linux-x86_64-2.7/dipy/data/tests creating build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_omp.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests creating build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-x86_64-2.7/dipy/fixes creating build/lib.linux-x86_64-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-x86_64-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-x86_64-2.7/dipy/external creating build/lib.linux-x86_64-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/external/tests creating build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/tissue.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/bundles.py -> build/lib.linux-x86_64-2.7/dipy/segment creating build/lib.linux-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment/benchmarks creating build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_adjustment.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_rb.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qbx.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mrf.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests creating build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-x86_64-2.7/dipy/sims creating build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests creating build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/localpca.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/adaptive_soft_matching.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/non_local_means.py -> build/lib.linux-x86_64-2.7/dipy/denoise creating build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_lpca.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_ascm.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_non_local_means.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests creating build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/denoise.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/mask.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/align.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/multi_io.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/combined_workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/flow_runner.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/io.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows creating build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_io.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_tracking.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_masking.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dti.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dki.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_mapmri.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/workflow_tests_utils.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_csa_csd.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_align.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests creating build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_text_block.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_button_and_slider_widgets.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/ascm_out_test.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion200.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_custom_interactor_style_events.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.linux-x86_64-2.7/dipy/data/files package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC test.o -o libtestlib.so x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC test.o -o libtestlib.so -fopenmp cythoning dipy/direction/pmf.pyx to dipy/direction/pmf.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/direction/pmf.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.direction.pmf' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/dipy creating build/temp.linux-x86_64-2.7/dipy/direction x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/pmf.c -o build/temp.linux-x86_64-2.7/dipy/direction/pmf.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/pmf.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/direction/pmf.o -o build/lib.linux-x86_64-2.7/dipy/direction/pmf.so -fopenmp cythoning dipy/direction/probabilistic_direction_getter.pyx to dipy/direction/probabilistic_direction_getter.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/direction/probabilistic_direction_getter.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.direction.probabilistic_direction_getter' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/probabilistic_direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/direction/probabilistic_direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/probabilistic_direction_getter.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/direction/probabilistic_direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/direction/probabilistic_direction_getter.so -fopenmp cythoning dipy/direction/closest_peak_direction_getter.pyx to dipy/direction/closest_peak_direction_getter.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/direction/closest_peak_direction_getter.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.direction.closest_peak_direction_getter' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/closest_peak_direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/direction/closest_peak_direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/closest_peak_direction_getter.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/direction/closest_peak_direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/direction/closest_peak_direction_getter.so -fopenmp cythoning dipy/direction/bootstrap_direction_getter.pyx to dipy/direction/bootstrap_direction_getter.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/direction/bootstrap_direction_getter.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.direction.bootstrap_direction_getter' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/direction/bootstrap_direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/direction/bootstrap_direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/direction/bootstrap_direction_getter.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/direction/bootstrap_direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/direction/bootstrap_direction_getter.so -fopenmp cythoning dipy/reconst/peak_direction_getter.pyx to dipy/reconst/peak_direction_getter.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/reconst/peak_direction_getter.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: dipy/reconst/peak_direction_getter.pyx:57:4: Overriding cdef method with def method. building 'dipy.reconst.peak_direction_getter' extension creating build/temp.linux-x86_64-2.7/dipy/reconst x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/peak_direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/peak_direction_getter.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.so -fopenmp cythoning dipy/reconst/recspeed.pyx to dipy/reconst/recspeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/reconst/recspeed.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: dipy/reconst/recspeed.pyx:570:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:59: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.reconst.recspeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-x86_64-2.7/dipy/reconst/recspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/reconst/recspeed.o -o build/lib.linux-x86_64-2.7/dipy/reconst/recspeed.so -fopenmp cythoning dipy/reconst/vec_val_sum.pyx to dipy/reconst/vec_val_sum.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/reconst/vec_val_sum.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.reconst.vec_val_sum' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-x86_64-2.7/dipy/reconst/vec_val_sum.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-x86_64-2.7/dipy/reconst/vec_val_sum.so -fopenmp cythoning dipy/reconst/quick_squash.pyx to dipy/reconst/quick_squash.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/reconst/quick_squash.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.reconst.quick_squash' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-x86_64-2.7/dipy/reconst/quick_squash.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-x86_64-2.7/dipy/reconst/quick_squash.so -fopenmp cythoning dipy/tracking/distances.pyx to dipy/tracking/distances.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/distances.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: dipy/tracking/distances.pyx:246:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:53: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:42: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:49: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:56: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:63: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:43: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1536:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.distances' extension creating build/temp.linux-x86_64-2.7/dipy/tracking x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-x86_64-2.7/dipy/tracking/distances.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/distances.o -o build/lib.linux-x86_64-2.7/dipy/tracking/distances.so -fopenmp cythoning dipy/tracking/streamlinespeed.pyx to dipy/tracking/streamlinespeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/streamlinespeed.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.streamlinespeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/streamlinespeed.c -o build/temp.linux-x86_64-2.7/dipy/tracking/streamlinespeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/streamlinespeed.c:600: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/streamlinespeed.o -o build/lib.linux-x86_64-2.7/dipy/tracking/streamlinespeed.so -fopenmp cythoning dipy/tracking/local/localtrack.pyx to dipy/tracking/local/localtrack.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/local/localtrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.local.localtrack' extension creating build/temp.linux-x86_64-2.7/dipy/tracking/local x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/localtrack.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/localtrack.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/localtrack.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/local/localtrack.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/localtrack.so -fopenmp cythoning dipy/tracking/local/direction_getter.pyx to dipy/tracking/local/direction_getter.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/local/direction_getter.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.local.direction_getter' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/direction_getter.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/local/direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/direction_getter.so -fopenmp cythoning dipy/tracking/local/tissue_classifier.pyx to dipy/tracking/local/tissue_classifier.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/local/tissue_classifier.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.local.tissue_classifier' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/tissue_classifier.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/tissue_classifier.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.so -fopenmp cythoning dipy/tracking/local/interpolation.pyx to dipy/tracking/local/interpolation.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/local/interpolation.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.local.interpolation' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/interpolation.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/interpolation.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/interpolation.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/local/interpolation.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/interpolation.so -fopenmp cythoning dipy/tracking/vox2track.pyx to dipy/tracking/vox2track.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/vox2track.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.vox2track' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-x86_64-2.7/dipy/tracking/vox2track.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:600: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/vox2track.o -o build/lib.linux-x86_64-2.7/dipy/tracking/vox2track.so -fopenmp cythoning dipy/tracking/propspeed.pyx to dipy/tracking/propspeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/propspeed.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: dipy/tracking/propspeed.pyx:134:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:134:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:135:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:45: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:370:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.propspeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-x86_64-2.7/dipy/tracking/propspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/propspeed.o -o build/lib.linux-x86_64-2.7/dipy/tracking/propspeed.so -fopenmp cythoning dipy/tracking/fbcmeasures.pyx to dipy/tracking/fbcmeasures.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/tracking/fbcmeasures.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.tracking.fbcmeasures' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/fbcmeasures.c -o build/temp.linux-x86_64-2.7/dipy/tracking/fbcmeasures.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/fbcmeasures.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/tracking/fbcmeasures.o -o build/lib.linux-x86_64-2.7/dipy/tracking/fbcmeasures.so -fopenmp cythoning dipy/segment/cythonutils.pyx to dipy/segment/cythonutils.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/cythonutils.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.cythonutils' extension creating build/temp.linux-x86_64-2.7/dipy/segment x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/cythonutils.c -o build/temp.linux-x86_64-2.7/dipy/segment/cythonutils.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/cythonutils.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/cythonutils.o -o build/lib.linux-x86_64-2.7/dipy/segment/cythonutils.so -fopenmp cythoning dipy/segment/featurespeed.pyx to dipy/segment/featurespeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/featurespeed.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.featurespeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/featurespeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/featurespeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/featurespeed.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/featurespeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/featurespeed.so -fopenmp cythoning dipy/segment/metricspeed.pyx to dipy/segment/metricspeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/metricspeed.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.metricspeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/metricspeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/metricspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/metricspeed.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/metricspeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/metricspeed.so -fopenmp cythoning dipy/segment/clusteringspeed.pyx to dipy/segment/clusteringspeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/clusteringspeed.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.clusteringspeed' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clusteringspeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/clusteringspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clusteringspeed.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/clusteringspeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/clusteringspeed.so -fopenmp cythoning dipy/segment/clustering_algorithms.pyx to dipy/segment/clustering_algorithms.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/clustering_algorithms.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.clustering_algorithms' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clustering_algorithms.c -o build/temp.linux-x86_64-2.7/dipy/segment/clustering_algorithms.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clustering_algorithms.c:599: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/clustering_algorithms.o -o build/lib.linux-x86_64-2.7/dipy/segment/clustering_algorithms.so -fopenmp cythoning dipy/segment/mrf.pyx to dipy/segment/mrf.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/segment/mrf.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.segment.mrf' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/mrf.c -o build/temp.linux-x86_64-2.7/dipy/segment/mrf.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/mrf.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/segment/mrf.o -o build/lib.linux-x86_64-2.7/dipy/segment/mrf.so -fopenmp cythoning dipy/denoise/denspeed.pyx to dipy/denoise/denspeed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/denoise/denspeed.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.denoise.denspeed' extension creating build/temp.linux-x86_64-2.7/dipy/denoise x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/denspeed.c -o build/temp.linux-x86_64-2.7/dipy/denoise/denspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/denspeed.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/denoise/denspeed.o -o build/lib.linux-x86_64-2.7/dipy/denoise/denspeed.so -fopenmp cythoning dipy/denoise/pca_noise_estimate.pyx to dipy/denoise/pca_noise_estimate.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/denoise/pca_noise_estimate.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.denoise.pca_noise_estimate' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/pca_noise_estimate.c -o build/temp.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/pca_noise_estimate.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.o -o build/lib.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.so -fopenmp cythoning dipy/denoise/nlmeans_block.pyx to dipy/denoise/nlmeans_block.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/denoise/nlmeans_block.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.denoise.nlmeans_block' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/nlmeans_block.c -o build/temp.linux-x86_64-2.7/dipy/denoise/nlmeans_block.o -msse2 -mfpmath=sse -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/denoise/nlmeans_block.o -o build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans_block.so -fopenmp cythoning dipy/denoise/enhancement_kernel.pyx to dipy/denoise/enhancement_kernel.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/denoise/enhancement_kernel.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.denoise.enhancement_kernel' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/enhancement_kernel.c -o build/temp.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/enhancement_kernel.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.o -o build/lib.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.so -fopenmp cythoning dipy/denoise/shift_twist_convolution.pyx to dipy/denoise/shift_twist_convolution.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/denoise/shift_twist_convolution.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.denoise.shift_twist_convolution' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/shift_twist_convolution.c -o build/temp.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/shift_twist_convolution.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.o -o build/lib.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.so -fopenmp cythoning dipy/align/vector_fields.pyx to dipy/align/vector_fields.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/vector_fields.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.vector_fields' extension creating build/temp.linux-x86_64-2.7/dipy/align x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/vector_fields.c -o build/temp.linux-x86_64-2.7/dipy/align/vector_fields.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/vector_fields.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/vector_fields.o -o build/lib.linux-x86_64-2.7/dipy/align/vector_fields.so -fopenmp cythoning dipy/align/sumsqdiff.pyx to dipy/align/sumsqdiff.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/sumsqdiff.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.sumsqdiff' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/sumsqdiff.c -o build/temp.linux-x86_64-2.7/dipy/align/sumsqdiff.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/sumsqdiff.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/sumsqdiff.o -o build/lib.linux-x86_64-2.7/dipy/align/sumsqdiff.so -fopenmp cythoning dipy/align/expectmax.pyx to dipy/align/expectmax.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/expectmax.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.expectmax' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/expectmax.c -o build/temp.linux-x86_64-2.7/dipy/align/expectmax.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/expectmax.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/expectmax.o -o build/lib.linux-x86_64-2.7/dipy/align/expectmax.so -fopenmp cythoning dipy/align/crosscorr.pyx to dipy/align/crosscorr.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/crosscorr.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.crosscorr' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/crosscorr.c -o build/temp.linux-x86_64-2.7/dipy/align/crosscorr.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/crosscorr.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/crosscorr.o -o build/lib.linux-x86_64-2.7/dipy/align/crosscorr.so -fopenmp cythoning dipy/align/bundlemin.pyx to dipy/align/bundlemin.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/bundlemin.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: dipy/align/bundlemin.pyx:380:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:380:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:380:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.align.bundlemin' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/bundlemin.c -o build/temp.linux-x86_64-2.7/dipy/align/bundlemin.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/bundlemin.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/bundlemin.o -o build/lib.linux-x86_64-2.7/dipy/align/bundlemin.so -fopenmp cythoning dipy/align/transforms.pyx to dipy/align/transforms.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/transforms.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.transforms' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/transforms.c -o build/temp.linux-x86_64-2.7/dipy/align/transforms.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/transforms.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/transforms.o -o build/lib.linux-x86_64-2.7/dipy/align/transforms.so -fopenmp cythoning dipy/align/parzenhist.pyx to dipy/align/parzenhist.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/align/parzenhist.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.align.parzenhist' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/parzenhist.c -o build/temp.linux-x86_64-2.7/dipy/align/parzenhist.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/parzenhist.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/align/parzenhist.o -o build/lib.linux-x86_64-2.7/dipy/align/parzenhist.so -fopenmp cythoning dipy/utils/omp.pyx to dipy/utils/omp.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/utils/omp.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.utils.omp' extension creating build/temp.linux-x86_64-2.7/dipy/utils x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/utils/omp.c -o build/temp.linux-x86_64-2.7/dipy/utils/omp.o -msse2 -mfpmath=sse -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/utils/omp.o -o build/lib.linux-x86_64-2.7/dipy/utils/omp.so -fopenmp cythoning dipy/utils/fast_numpy.pyx to dipy/utils/fast_numpy.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/dipy/utils/fast_numpy.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'dipy.utils.fast_numpy' extension x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/utils/fast_numpy.c -o build/temp.linux-x86_64-2.7/dipy/utils/fast_numpy.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/utils/fast_numpy.c:598: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-x86_64-2.7/dipy/utils/fast_numpy.o -o build/lib.linux-x86_64-2.7/dipy/utils/fast_numpy.so -fopenmp running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_fit_dti -> build/scripts-2.7 copying and adjusting bin/dipy_fit_csd -> build/scripts-2.7 copying and adjusting bin/dipy_reslice -> build/scripts-2.7 copying and adjusting bin/dipy_fit_mapmri -> build/scripts-2.7 copying and adjusting bin/dipy_mask -> build/scripts-2.7 copying and adjusting bin/dipy_fit_dki -> build/scripts-2.7 copying and adjusting bin/dipy_fit_csa -> build/scripts-2.7 copying and adjusting bin/dipy_track_det -> build/scripts-2.7 copying and adjusting bin/dipy_info -> build/scripts-2.7 copying and adjusting bin/dipy_median_otsu -> build/scripts-2.7 copying and adjusting bin/dipy_nlmeans -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_fit_dti from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_csd from 664 to 775 changing mode of build/scripts-2.7/dipy_reslice from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_mapmri from 664 to 775 changing mode of build/scripts-2.7/dipy_mask from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_dki from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_csa from 664 to 775 changing mode of build/scripts-2.7/dipy_track_det from 664 to 775 changing mode of build/scripts-2.7/dipy_info from 664 to 775 changing mode of build/scripts-2.7/dipy_median_otsu from 664 to 775 changing mode of build/scripts-2.7/dipy_nlmeans from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/<>' fakeroot debian/rules binary dh binary --buildsystem=python_distutils --with python2 dh_testroot -O--buildsystem=python_distutils dh_prep -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_install: This feature will be removed in compat 12. python setup.py install --force --root=/<>/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_py package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC test.o -o libtestlib.so x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-cNmbuo/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -g -O2 -flto=auto -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC test.o -o libtestlib.so -fopenmp skipping 'dipy/direction/pmf.c' Cython extension (up-to-date) skipping 'dipy/direction/probabilistic_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/direction/closest_peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/direction/bootstrap_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/recspeed.c' Cython extension (up-to-date) skipping 'dipy/reconst/vec_val_sum.c' Cython extension (up-to-date) skipping 'dipy/reconst/quick_squash.c' Cython extension (up-to-date) skipping 'dipy/tracking/distances.c' Cython extension (up-to-date) skipping 'dipy/tracking/streamlinespeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/localtrack.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/direction_getter.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/tissue_classifier.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/interpolation.c' Cython extension (up-to-date) skipping 'dipy/tracking/vox2track.c' Cython extension (up-to-date) skipping 'dipy/tracking/propspeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/fbcmeasures.c' Cython extension (up-to-date) skipping 'dipy/segment/cythonutils.c' Cython extension (up-to-date) skipping 'dipy/segment/featurespeed.c' Cython extension (up-to-date) skipping 'dipy/segment/metricspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clusteringspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clustering_algorithms.c' Cython extension (up-to-date) skipping 'dipy/segment/mrf.c' Cython extension (up-to-date) skipping 'dipy/denoise/denspeed.c' Cython extension (up-to-date) skipping 'dipy/denoise/pca_noise_estimate.c' Cython extension (up-to-date) skipping 'dipy/denoise/nlmeans_block.c' Cython extension (up-to-date) skipping 'dipy/denoise/enhancement_kernel.c' Cython extension (up-to-date) skipping 'dipy/denoise/shift_twist_convolution.c' Cython extension (up-to-date) skipping 'dipy/align/vector_fields.c' Cython extension (up-to-date) skipping 'dipy/align/sumsqdiff.c' Cython extension (up-to-date) skipping 'dipy/align/expectmax.c' Cython extension (up-to-date) skipping 'dipy/align/crosscorr.c' Cython extension (up-to-date) skipping 'dipy/align/bundlemin.c' Cython extension (up-to-date) skipping 'dipy/align/transforms.c' Cython extension (up-to-date) skipping 'dipy/align/parzenhist.c' Cython extension (up-to-date) skipping 'dipy/utils/omp.c' Cython extension (up-to-date) skipping 'dipy/utils/fast_numpy.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/tmp creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python2.7 creating /<>/debian/tmp/usr/lib/python2.7/dist-packages creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-x86_64-2.7/dipy/pkg_info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-x86_64-2.7/dipy/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/clusteringspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/featurespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/clustering_algorithms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/metricspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/benchmarks/bench_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/cythonutils.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/threshold.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/tissue.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_adjustment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_rb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_qb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_feature.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_qbx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_mrf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/mrf.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/bundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/reconst.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/align.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/multi_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/combined_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/flow_runner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_iap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_masking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/workflow_tests_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_csa_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_align.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/crosscorr.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/expectmax.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/sumsqdiff.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/vector_fields.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/parzenhist.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/bundlemin.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_crosscorr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_whole_brain_slr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_sumsqdiff.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_expectmax.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_transforms.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_vector_fields.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_parzenhist.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/transforms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-x86_64-2.7/dipy/data/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-x86_64-2.7/dipy/data/fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.bvals.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_text_block.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_642.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_362.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/circle.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_file_select_menu_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/aniso_vox.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_file_select_menu_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion100.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_isbi2013_2shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_button_panel.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_taiwan_dsi.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/grad_514.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib0.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_line_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_piesno.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/55dir_grad.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/sphere_grad.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_button_and_slider_widgets.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dsi515_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/func_coef.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C3.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.nii -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/ScannerVectors_GQI101.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_disk_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/cb_2.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/ascm_out_test.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/tracks300.trk -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dipy_colormaps.json -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/55dir_grad.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_textbox.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/life_matlab_rmse.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/func_discrete.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion200.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_3shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_custom_interactor_style_events.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/t1_coronal_slice.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.gradients.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_disk_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_button_panel.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/S0_10slices.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_textbox.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dsi4169_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib2.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/eg_3voxels.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_line_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/life_matlab_weights.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-x86_64-2.7/dipy/data/tests/test_fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-x86_64-2.7/dipy/data/tests/test_data.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/sphere_stats.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/profile.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/wavelet.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/histeq.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/rng.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/onetime.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/closest_peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/probabilistic_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/bootstrap_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_pmf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_bootstrap_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_prob_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/pmf.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_squash.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/vec_val_sum.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/forecast.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/quick_squash.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_forecast.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_peak_finding.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_peakdf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_reco_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/recspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/localpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/denspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/adaptive_soft_matching.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans_block.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_lpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_ascm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_kernel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-x86_64-2.7/dipy/external/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-x86_64-2.7/dipy/external/fsl.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-x86_64-2.7/dipy/external/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-x86_64-2.7/dipy/info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/scipy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/argparse.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/fast_numpy.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/six.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/_importlib.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/omp.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_omp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/optpkg.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/localtrack.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/localtracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/interpolation.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/test_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/test_interpolation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/test_tissue_classifier.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/fbcmeasures.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/distances.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks/bench_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/streamlinespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/propspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/eudx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_track_volumes.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_propagation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_distances.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_fbc.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_localtrack.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/vox2track.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/COMMIT_INFO.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-x86_64-2.7/dipy/sims/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-x86_64-2.7/dipy/sims/phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/test_phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/test_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/actor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/colormap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/projections.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_widgets.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_actors.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/widget.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-x86_64-2.7/dipy/boots/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-x86_64-2.7/dipy/boots/resampling.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/test_scripts.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/scriptrunner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/spherepoints.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/test_memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/test_decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/pickles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/trackvis.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/vtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/image.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/__config__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy running install_scripts creating /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_dti -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_csd -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reslice -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_mapmri -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_mask -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_dki -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_csa -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_track_det -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_info -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_median_otsu -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_nlmeans -> /<>/debian/tmp/usr/bin changing mode of /<>/debian/tmp/usr/bin/dipy_fit_dti to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_csd to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_reslice to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_mapmri to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_mask to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_dki to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_fit_csa to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_track_det to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_info to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_median_otsu to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_nlmeans to 775 running install_data creating /<>/debian/tmp/usr/share creating /<>/debian/tmp/usr/share/doc creating /<>/debian/tmp/usr/share/doc/dipy creating /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_surfaces.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_advanced.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_fwdti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_nlmeans.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/linear_fascicle_evaluation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_ivim.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/introduction_to_basic_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_reconst.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_roi_contour.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_mapmri.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/contextual_enhancement.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_ui.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_extending_clustering_framework.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_bootstrap_peaks.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/affine_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_2d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tissue_classification.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_tissue_classifier.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/combined_workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/deterministic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/fiber_to_bundle_coherence.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_localpca.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/particle_filtering_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/piesno.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/kfold_xval.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_ascm.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_features.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_forecast.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/bundle_registration.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_slice.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_bundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.14.0.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/*/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/<>/build HOME=/<>/build; \ cd doc; /usr/bin/make html-after-examples SPHINXOPTS="-D today=\"May 14, 2018\"" make[2]: Entering directory '/<>/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="May 14, 2018" . _build/html Running Sphinx v1.8.5 /<>/doc/sphinxext/github.py:149: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('Initializing GitHub plugin') Initializing GitHub plugin making output directory... loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused',))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 110 source files that are out of date updating environment: 110 added, 0 changed, 0 removed reading sources... [ 0%] api_changes reading sources... [ 1%] cite reading sources... [ 2%] dependencies reading sources... [ 3%] devel/coding_style_guideline reading sources... [ 4%] devel/commit_codes reading sources... [ 5%] devel/gitwash/configure_git reading sources... [ 6%] devel/gitwash/development_workflow reading sources... [ 7%] devel/gitwash/dot2_dot3 reading sources... [ 8%] devel/gitwash/following_latest reading sources... [ 9%] devel/gitwash/forking_hell reading sources... [ 10%] devel/gitwash/git_development reading sources... [ 10%] devel/gitwash/git_install reading sources... [ 11%] devel/gitwash/git_intro reading sources... [ 12%] devel/gitwash/git_resources reading sources... [ 13%] devel/gitwash/index reading sources... [ 14%] devel/gitwash/maintainer_workflow reading sources... [ 15%] devel/gitwash/patching reading sources... [ 16%] devel/gitwash/set_up_fork reading sources... [ 17%] devel/index reading sources... [ 18%] devel/intro reading sources... [ 19%] devel/make_release reading sources... [ 20%] devel/python3 reading sources... [ 20%] developers reading sources... [ 21%] documentation reading sources... [ 22%] examples_built/affine_registration_3d reading sources... [ 23%] examples_built/brain_extraction_dwi reading sources... [ 24%] examples_built/bundle_registration reading sources... [ 25%] examples_built/combined_workflow_creation reading sources... [ 26%] examples_built/contextual_enhancement reading sources... [ 27%] examples_built/denoise_localpca reading sources... [ 28%] examples_built/denoise_nlmeans reading sources... [ 29%] examples_built/deterministic_fiber_tracking reading sources... [ 30%] examples_built/fiber_to_bundle_coherence reading sources... [ 30%] examples_built/gradients_spheres reading sources... [ 31%] examples_built/introduction_to_basic_tracking reading sources... [ 32%] examples_built/kfold_xval reading sources... [ 33%] examples_built/linear_fascicle_evaluation reading sources... [ 34%] examples_built/particle_filtering_fiber_tracking reading sources... [ 35%] examples_built/probabilistic_fiber_tracking reading sources... [ 36%] examples_built/quick_start reading sources... [ 37%] examples_built/reconst_csa reading sources... [ 38%] examples_built/reconst_csa_parallel reading sources... [ 39%] examples_built/reconst_csd reading sources... [ 40%] examples_built/reconst_csd_parallel reading sources... [ 40%] examples_built/reconst_dki reading sources... [ 41%] examples_built/reconst_dsi reading sources... [ 42%] examples_built/reconst_dsi_metrics reading sources... [ 43%] examples_built/reconst_dsid reading sources... [ 44%] examples_built/reconst_dti reading sources... [ 45%] examples_built/reconst_forecast reading sources... [ 46%] examples_built/reconst_fwdti reading sources... [ 47%] examples_built/reconst_gqi reading sources... [ 48%] examples_built/reconst_ivim reading sources... [ 49%] examples_built/reconst_mapmri reading sources... [ 50%] examples_built/reconst_shore reading sources... [ 50%] examples_built/reconst_shore_metrics reading sources... [ 51%] examples_built/reslice_datasets reading sources... [ 52%] examples_built/restore_dti reading sources... [ 53%] examples_built/segment_clustering_features reading sources... [ 54%] examples_built/segment_clustering_metrics reading sources... [ 55%] examples_built/segment_extending_clustering_framework reading sources... [ 56%] examples_built/segment_quickbundles reading sources... [ 57%] examples_built/sfm_reconst reading sources... [ 58%] examples_built/sfm_tracking reading sources... [ 59%] examples_built/simulate_dki reading sources... [ 60%] examples_built/simulate_multi_tensor reading sources... [ 60%] examples_built/snr_in_cc reading sources... [ 61%] examples_built/streamline_formats reading sources... [ 62%] examples_built/streamline_length reading sources... [ 63%] examples_built/streamline_tools reading sources... [ 64%] examples_built/syn_registration_2d reading sources... [ 65%] examples_built/syn_registration_3d reading sources... [ 66%] examples_built/tissue_classification reading sources... [ 67%] examples_built/tracking_bootstrap_peaks reading sources... [ 68%] examples_built/tracking_quick_start reading sources... [ 69%] examples_built/tracking_tissue_classifier reading sources... [ 70%] examples_built/viz_advanced reading sources... [ 70%] examples_built/viz_bundles reading sources... [ 71%] examples_built/viz_roi_contour reading sources... [ 72%] examples_built/viz_slice reading sources... [ 73%] examples_built/viz_surfaces reading sources... [ 74%] examples_built/viz_ui reading sources... [ 75%] examples_built/workflow_creation reading sources... [ 76%] examples_index reading sources... [ 77%] faq reading sources... [ 78%] gimbal_lock reading sources... [ 79%] glossary reading sources... [ 80%] index reading sources... [ 80%] installation reading sources... [ 81%] introduction reading sources... [ 82%] mission reading sources... [ 83%] note_about_examples reading sources... [ 84%] old_highlights reading sources... [ 85%] old_news reading sources... [ 86%] release0.10 reading sources... [ 87%] release0.11 reading sources... [ 88%] release0.12 reading sources... [ 89%] release0.13 reading sources... [ 90%] release0.14 reading sources... [ 90%] release0.6 reading sources... [ 91%] release0.7 reading sources... [ 92%] release0.8 reading sources... [ 93%] release0.9 reading sources... [ 94%] stateoftheart reading sources... [ 95%] subscribe reading sources... [ 96%] theory/b_and_q reading sources... [ 97%] theory/bmatrix reading sources... [ 98%] theory/gqi reading sources... [ 99%] theory/index reading sources... [100%] theory/spherical links_names.inc:38: WARNING: Duplicate explicit target name: "sphinx". links_names.inc:57: WARNING: Duplicate explicit target name: "pep8". /<>/doc/devel/gitwash/git_resources.rst:34: WARNING: Explicit markup ends without a blank line; unexpected unindent. /<>/doc/devel/make_release.rst:78: WARNING: Unknown target name: "nipy buildbots". /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference/index' /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference_cmd/index' /<>/doc/examples_built/affine_registration_3d.rst:82: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:118: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:230: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:268: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:16: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:120: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:77: WARNING: Unknown target name: "out". /<>/doc/examples_built/combined_workflow_creation.rst:77: WARNING: Unknown target name: "out". /<>/doc/examples_built/contextual_enhancement.rst:79: WARNING: Literal block expected; none found. /<>/doc/examples_built/contextual_enhancement.rst:191: WARNING: Literal block expected; none found. /<>/doc/examples_built/fiber_to_bundle_coherence.rst:44: WARNING: Literal block expected; none found. /<>/doc/examples_built/fiber_to_bundle_coherence.rst:297: WARNING: duplicate citation Meesters2016, other instance in /<>/doc/examples_built/contextual_enhancement.rst /<>/doc/examples_built/fiber_to_bundle_coherence.rst:307: WARNING: duplicate citation DuitsAndFranken2011, other instance in /<>/doc/examples_built/contextual_enhancement.rst /<>/doc/examples_built/fiber_to_bundle_coherence.rst:312: WARNING: duplicate citation Rodrigues2010, other instance in /<>/doc/examples_built/contextual_enhancement.rst /<>/doc/examples_built/introduction_to_basic_tracking.rst:29: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:132: WARNING: Literal block expected; none found. /<>/doc/examples_built/kfold_xval.rst:156: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:64: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:111: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:190: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:219: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:319: WARNING: Literal block expected; none found. /<>/doc/examples_built/linear_fascicle_evaluation.rst:375: WARNING: Literal block expected; none found. /<>/doc/examples_built/particle_filtering_fiber_tracking.rst:65: WARNING: Title underline too short. CMC/ACT Tissue Classifiers --------------------- /<>/doc/examples_built/particle_filtering_fiber_tracking.rst:151: WARNING: Literal block expected; none found. /<>/doc/examples_built/reconst_forecast.rst:114: WARNING: Literal block expected; none found. /<>/doc/examples_built/reconst_shore_metrics.rst:133: WARNING: duplicate citation Descoteaux2011, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:137: WARNING: duplicate citation Wu2007, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/reconst_shore_metrics.rst:140: WARNING: duplicate citation Wu2008, other instance in /<>/doc/examples_built/reconst_dsi_metrics.rst /<>/doc/examples_built/segment_clustering_metrics.rst:184: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_features.rst /<>/doc/examples_built/segment_extending_clustering_framework.rst:272: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_clustering_metrics.rst /<>/doc/examples_built/segment_quickbundles.rst:180: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_extending_clustering_framework.rst /<>/doc/examples_built/sfm_tracking.rst:185: WARNING: duplicate citation Rokem2015, other instance in /<>/doc/examples_built/sfm_reconst.rst /<>/doc/examples_built/simulate_multi_tensor.rst:89: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:117: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:178: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:191: WARNING: Literal block expected; none found. /<>/doc/examples_built/snr_in_cc.rst:194: WARNING: duplicate citation Descoteaux2011, other instance in /<>/doc/examples_built/reconst_shore_metrics.rst /<>/doc/examples_built/streamline_tools.rst:10: WARNING: Duplicate explicit target name: "freesurfer". /<>/doc/examples_built/syn_registration_2d.rst:49: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:99: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:116: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:134: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:241: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:258: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_2d.rst:278: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/affine_registration_3d.rst /<>/doc/examples_built/syn_registration_3d.rst:104: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:157: WARNING: Literal block expected; none found. /<>/doc/examples_built/syn_registration_3d.rst:175: WARNING: duplicate citation Avants09, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/syn_registration_3d.rst:180: WARNING: duplicate citation Avants11, other instance in /<>/doc/examples_built/syn_registration_2d.rst /<>/doc/examples_built/tracking_bootstrap_peaks.rst:6: WARNING: Title overline too short. ================================================= Bootstrap and Closest Peak Direction Getters Example ================================================= /<>/doc/examples_built/tracking_bootstrap_peaks.rst:76: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_bootstrap_peaks.rst:145: WARNING: Explicit markup ends without a blank line; unexpected unindent. /<>/doc/examples_built/tracking_bootstrap_peaks.rst:148: WARNING: Explicit markup ends without a blank line; unexpected unindent. /<>/doc/examples_built/tracking_quick_start.rst:210: WARNING: duplicate citation Garyfallidis12, other instance in /<>/doc/examples_built/segment_quickbundles.rst /<>/doc/examples_built/tracking_tissue_classifier.rst:155: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:227: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:352: WARNING: Literal block expected; none found. /<>/doc/examples_built/tracking_tissue_classifier.rst:369: WARNING: duplicate citation Smith2012, other instance in /<>/doc/examples_built/particle_filtering_fiber_tracking.rst /<>/doc/examples_built/viz_bundles.rst:209: WARNING: Error in "figure" directive: invalid option block. .. figure:: bundle5.png :align: center **Color every streamline by the length of the streamline ** /<>/doc/examples_built/viz_roi_contour.rst:6: WARNING: Title overline too short. ================================== Visualization of ROI Surface Rendered with Streamlines ================================== /<>/doc/examples_built/viz_slice.rst:171: WARNING: Literal block expected; none found. /<>/doc/examples_built/viz_ui.rst:198: WARNING: Title underline too short. 2D File Select Menu ============== /<>/doc/examples_built/viz_ui.rst:198: WARNING: Title underline too short. 2D File Select Menu ============== /<>/doc/examples_built/workflow_creation.rst:21: WARNING: Literal block expected; none found. /<>/doc/examples_built/workflow_creation.rst:103: WARNING: Literal block expected; none found. /<>/doc/examples_built/workflow_creation.rst:63: WARNING: Unknown target name: "out". /<>/doc/examples_built/workflow_creation.rst:63: WARNING: Unknown target name: "out". /<>/doc/examples_index.rst:64: WARNING: Title underline too short. Fiber ORientation Estimated using Continuous Axially Symmetric Tensors ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/examples_index.rst:64: WARNING: Title underline too short. Fiber ORientation Estimated using Continuous Axially Symmetric Tensors ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/doc/faq.rst:106: WARNING: Enumerated list ends without a blank line; unexpected unindent. /<>/doc/gimbal_lock.rst:27: WARNING: image file not readable: images/spitfire_0.png /<>/doc/gimbal_lock.rst:32: WARNING: image file not readable: images/spitfire_x.png /<>/doc/gimbal_lock.rst:37: WARNING: image file not readable: images/spitfire_y.png /<>/doc/gimbal_lock.rst:42: WARNING: image file not readable: images/spitfire_hoped.png /<>/doc/release0.6.rst:55: WARNING: Unknown target name: "squash". /<>/doc/release0.6.rst:165: WARNING: Unknown target name: "squash". /<>/doc/release0.7.rst:88: WARNING: Unknown target name: "tensor". looking for now-outdated files... none found pickling environment... done checking consistency... /<>/doc/dependencies.rst: WARNING: document isn't included in any toctree /<>/doc/devel/gitwash/dot2_dot3.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/affine_registration_3d.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/brain_extraction_dwi.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/bundle_registration.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/combined_workflow_creation.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/contextual_enhancement.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/denoise_localpca.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/denoise_nlmeans.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/deterministic_fiber_tracking.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/fiber_to_bundle_coherence.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/gradients_spheres.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/introduction_to_basic_tracking.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/kfold_xval.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/linear_fascicle_evaluation.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/particle_filtering_fiber_tracking.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/probabilistic_fiber_tracking.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/quick_start.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_csa.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_csa_parallel.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_csd.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_csd_parallel.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_dki.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_dsi.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_dsi_metrics.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_dsid.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_dti.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_forecast.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_fwdti.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_gqi.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_ivim.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_mapmri.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_shore.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reconst_shore_metrics.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/reslice_datasets.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/restore_dti.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/segment_clustering_features.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/segment_clustering_metrics.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/segment_extending_clustering_framework.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/segment_quickbundles.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/sfm_reconst.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/sfm_tracking.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/simulate_dki.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/simulate_multi_tensor.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/snr_in_cc.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/streamline_formats.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/streamline_length.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/streamline_tools.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/syn_registration_2d.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/syn_registration_3d.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/tissue_classification.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/tracking_bootstrap_peaks.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/tracking_quick_start.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/tracking_tissue_classifier.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_advanced.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_bundles.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_roi_contour.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_slice.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_surfaces.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/viz_ui.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/workflow_creation.rst: WARNING: document isn't included in any toctree /<>/doc/gimbal_lock.rst: WARNING: document isn't included in any toctree /<>/doc/glossary.rst: WARNING: document isn't included in any toctree /<>/doc/old_highlights.rst: WARNING: document isn't included in any toctree /<>/doc/old_news.rst: WARNING: document isn't included in any toctree /<>/doc/subscribe.rst: WARNING: document isn't included in any toctree /<>/doc/theory/b_and_q.rst: WARNING: document isn't included in any toctree /<>/doc/theory/bmatrix.rst: WARNING: document isn't included in any toctree /<>/doc/theory/gqi.rst: WARNING: document isn't included in any toctree /<>/doc/examples_built/tracking_bootstrap_peaks.rst:144: WARNING: Citation [Berman_boot] is not referenced. /<>/doc/examples_built/tracking_bootstrap_peaks.rst:147: WARNING: Citation [Jeurissen_boot] is not referenced. done preparing documents... done writing output... [ 0%] api_changes writing output... [ 1%] cite writing output... [ 2%] dependencies writing output... [ 3%] devel/coding_style_guideline writing output... [ 4%] devel/commit_codes writing output... [ 5%] devel/gitwash/configure_git writing output... [ 6%] devel/gitwash/development_workflow writing output... [ 7%] devel/gitwash/dot2_dot3 writing output... [ 8%] devel/gitwash/following_latest writing output... [ 9%] devel/gitwash/forking_hell writing output... [ 10%] devel/gitwash/git_development writing output... [ 10%] devel/gitwash/git_install writing output... [ 11%] devel/gitwash/git_intro writing output... [ 12%] devel/gitwash/git_resources writing output... [ 13%] devel/gitwash/index writing output... [ 14%] devel/gitwash/maintainer_workflow writing output... [ 15%] devel/gitwash/patching writing output... [ 16%] devel/gitwash/set_up_fork writing output... [ 17%] devel/index writing output... [ 18%] devel/intro writing output... [ 19%] devel/make_release writing output... [ 20%] devel/python3 writing output... [ 20%] developers writing output... [ 21%] documentation writing output... [ 22%] examples_built/affine_registration_3d writing output... [ 23%] examples_built/brain_extraction_dwi writing output... [ 24%] examples_built/bundle_registration writing output... [ 25%] examples_built/combined_workflow_creation writing output... [ 26%] examples_built/contextual_enhancement writing output... [ 27%] examples_built/denoise_localpca writing output... [ 28%] examples_built/denoise_nlmeans writing output... [ 29%] examples_built/deterministic_fiber_tracking writing output... [ 30%] examples_built/fiber_to_bundle_coherence writing output... [ 30%] examples_built/gradients_spheres writing output... [ 31%] examples_built/introduction_to_basic_tracking writing output... [ 32%] examples_built/kfold_xval writing output... [ 33%] examples_built/linear_fascicle_evaluation writing output... [ 34%] examples_built/particle_filtering_fiber_tracking writing output... [ 35%] examples_built/probabilistic_fiber_tracking writing output... [ 36%] examples_built/quick_start writing output... [ 37%] examples_built/reconst_csa writing output... [ 38%] examples_built/reconst_csa_parallel writing output... [ 39%] examples_built/reconst_csd writing output... [ 40%] examples_built/reconst_csd_parallel writing output... [ 40%] examples_built/reconst_dki writing output... [ 41%] examples_built/reconst_dsi writing output... [ 42%] examples_built/reconst_dsi_metrics writing output... [ 43%] examples_built/reconst_dsid writing output... [ 44%] examples_built/reconst_dti writing output... [ 45%] examples_built/reconst_forecast writing output... [ 46%] examples_built/reconst_fwdti writing output... [ 47%] examples_built/reconst_gqi writing output... [ 48%] examples_built/reconst_ivim writing output... [ 49%] examples_built/reconst_mapmri writing output... [ 50%] examples_built/reconst_shore writing output... [ 50%] examples_built/reconst_shore_metrics writing output... [ 51%] examples_built/reslice_datasets writing output... [ 52%] examples_built/restore_dti writing output... [ 53%] examples_built/segment_clustering_features writing output... [ 54%] examples_built/segment_clustering_metrics writing output... [ 55%] examples_built/segment_extending_clustering_framework writing output... [ 56%] examples_built/segment_quickbundles writing output... [ 57%] examples_built/sfm_reconst writing output... [ 58%] examples_built/sfm_tracking writing output... [ 59%] examples_built/simulate_dki writing output... [ 60%] examples_built/simulate_multi_tensor writing output... [ 60%] examples_built/snr_in_cc writing output... [ 61%] examples_built/streamline_formats writing output... [ 62%] examples_built/streamline_length writing output... [ 63%] examples_built/streamline_tools writing output... [ 64%] examples_built/syn_registration_2d writing output... [ 65%] examples_built/syn_registration_3d writing output... [ 66%] examples_built/tissue_classification writing output... [ 67%] examples_built/tracking_bootstrap_peaks writing output... [ 68%] examples_built/tracking_quick_start writing output... [ 69%] examples_built/tracking_tissue_classifier writing output... [ 70%] examples_built/viz_advanced writing output... [ 70%] examples_built/viz_bundles writing output... [ 71%] examples_built/viz_roi_contour writing output... [ 72%] examples_built/viz_slice writing output... [ 73%] examples_built/viz_surfaces writing output... [ 74%] examples_built/viz_ui writing output... [ 75%] examples_built/workflow_creation writing output... [ 76%] examples_index writing output... [ 77%] faq writing output... [ 78%] gimbal_lock writing output... [ 79%] glossary writing output... [ 80%] index writing output... [ 80%] installation writing output... [ 81%] introduction writing output... [ 82%] mission writing output... [ 83%] note_about_examples writing output... [ 84%] old_highlights writing output... [ 85%] old_news writing output... [ 86%] release0.10 writing output... [ 87%] release0.11 writing output... [ 88%] release0.12 writing output... [ 89%] release0.13 writing output... [ 90%] release0.14 writing output... [ 90%] release0.6 writing output... [ 91%] release0.7 writing output... [ 92%] release0.8 writing output... [ 93%] release0.9 writing output... [ 94%] stateoftheart writing output... [ 95%] subscribe writing output... [ 96%] theory/b_and_q writing output... [ 97%] theory/bmatrix writing output... [ 98%] theory/gqi writing output... [ 99%] theory/index writing output... [100%] theory/spherical /<>/doc/examples_built/denoise_nlmeans.rst:99: WARNING: undefined label: example_denoise_ascm (if the link has no caption the label must precede a section header) /<>/doc/examples_built/linear_fascicle_evaluation.rst:223: WARNING: undefined label: kfold_xval (if the link has no caption the label must precede a section header) /<>/doc/examples_built/particle_filtering_fiber_tracking.rst:23: WARNING: undefined label: probabilistic_fiber_tracking (if the link has no caption the label must precede a section header) /<>/doc/examples_built/reconst_dki.rst:108: WARNING: undefined label: example-denoise-nlmeans (if the link has no caption the label must precede a section header) generating indices... genindex writing additional pages... search copying images... [ 0%] examples_built/transformed_com_2.png copying images... [ 1%] examples_built/threshold_fa.png copying images... [ 2%] examples_built/t1_slices_input.png copying images... [ 2%] examples_built/all_streamlines_binary_classifier.png copying images... [ 3%] examples_built/MAPMRI_maps_regularization.png copying images... [ 4%] examples_built/multi_tensor_simulation.png copying images... [ 4%] examples_built/beta_histogram.png copying images... [ 5%] _static/colorfa.png copying images... [ 6%] examples_built/fornix_centroids.png copying images... [ 6%] examples_built/transformed_affine_1.png copying images... [ 7%] examples_built/csd_recursive_response.png copying images... [ 8%] devel/gitwash/branch_dropdown.png copying images... [ 9%] examples_built/diffeomorphic_map_b0s.png copying images... [ 9%] examples_built/fornix_initial.png copying images... [ 10%] examples_built/error_histograms.png copying images... [ 11%] examples_built/fornix_clusters.png copying images... [ 11%] theory/spherical_coordinates.png copying images... [ 12%] examples_built/t1_image.png copying images... [ 13%] examples_built/MAPMRI_ng.png copying images... [ 13%] examples_built/arclength_feature.png copying images... [ 14%] examples_built/diffusion_coeff.png copying images... [ 15%] examples_built/diffeomorphic_map.png copying images... [ 16%] examples_built/dsi_gfa.png copying images... [ 16%] examples_built/corpuscallosum_sagittal.png copying images... [ 17%] examples_built/input_3d.png copying images... [ 18%] examples_built/CC_segmentation.png copying images... [ 18%] examples_built/FORECAST_indices.png copying images... [ 19%] examples_built/dti_fa_distributions.png copying images... [ 20%] examples_built/MAPMRI_maps.png copying images... [ 20%] examples_built/Diffusion_tensor_measures_from_DTI_and_DKI.png copying images... [ 21%] examples_built/fornix_clusters_cosine.png copying images... [ 22%] examples_built/rtop.png copying images... [ 23%] examples_built/sfm_streamlines.png copying images... [ 23%] examples_built/csd_both.png copying images... [ 24%] examples_built/slices.png copying images... [ 25%] _static/pretty_tracks.png copying images... [ 25%] examples_built/warped_moving.png copying images... [ 26%] examples_built/Kurtosis_tensor_standard_measures.png copying images... [ 27%] examples_built/_static/fbc_illustration.png copying images... [ 27%] examples_built/denoised.png copying images... [ 28%] examples_built/Kurtosis_Microstructural_measures.png copying images... [ 29%] examples_built/bundle1.png copying images... [ 30%] examples_built/transformed_rigid_2.png copying images... [ 30%] examples_built/contour_from_roi_tutorial.png copying images... [ 31%] examples_built/cube.png copying images... [ 32%] examples_built/transformed_com_0.png copying images... [ 32%] examples_built/perfusion_fraction.png copying images... [ 33%] examples_built/OR_after.png copying images... [ 34%] examples_built/life_optimized.png copying images... [ 34%] examples_built/bundle6.png copying images... [ 35%] examples_built/sf_both.png copying images... [ 36%] examples_built/transformed_affine_2.png copying images... [ 37%] examples_built/tensor_ellipsoids.png copying images... [ 37%] examples_built/warped_static.png copying images... [ 38%] examples_built/before_registration.png copying images... [ 39%] examples_built/mosaic.png copying images... [ 39%] examples_built/white_matter_mask.png copying images... [ 40%] examples_built/all_streamlines_threshold_classifier.png copying images... [ 41%] examples_built/probabilities.png copying images... [ 41%] examples_built/lengths_plots.png copying images... [ 42%] examples_built/CSF_slice.png copying images... [ 43%] examples_built/bootstrap_dg_CSD.png copying images... [ 44%] examples_built/csd_response.png copying images... [ 44%] examples_built/fornix_clusters_arclength.png copying images... [ 45%] examples_built/enhancements.png copying images... [ 46%] examples_built/tensor_odfs.png copying images... [ 46%] examples_built/simulated_dki_signal.png copying images... [ 47%] examples_built/simulated_signal.png copying images... [ 48%] examples_built/median_otsu.png copying images... [ 48%] examples_built/center_of_mass_feature.png copying images... [ 49%] examples_built/tensor_ellipsoids_wls_noisy.png copying images... [ 50%] examples_built/act_maps.png copying images... [ 51%] examples_built/simulated_cosine_bundle.png copying images... [ 51%] examples_built/transformed_trans_1.png copying images... [ 52%] examples_built/pft_streamlines.png copying images... [ 53%] examples_built/SHORE_maps.png copying images... [ 53%] examples_built/inverse_warp_result.png copying images... [ 54%] examples_built/csa_odfs.png copying images... [ 55%] examples_built/life_candidates.png copying images... [ 55%] examples_built/In_vivo_free_water_DTI_and_standard_DTI_corrected.png copying images... [ 56%] examples_built/slices_lut.png copying images... [ 57%] examples_built/t1_slices_res2.png copying images... [ 58%] examples_built/csd_direction_field.png copying images... [ 58%] examples_built/resampled_0.png copying images... [ 59%] examples_built/msd.png copying images... [ 60%] examples_built/direct_warp_result.png copying images... [ 60%] examples_built/perfusion_coeff.png copying images... [ 61%] examples_built/final_seg.png copying images... [ 62%] examples_built/denoised_localpca.png copying images... [ 62%] examples_built/transformed_trans_0.png copying images... [ 63%] examples_built/kernel.png copying images... [ 64%] examples_built/initial_vs_updated.png copying images... [ 65%] examples_built/corpuscallosum_axial.png copying images... [ 65%] examples_built/full_sphere.png copying images... [ 66%] devel/gitwash/collaborators.png copying images... [ 67%] examples_built/transformed_affine_0.png copying images... [ 67%] examples_built/input_images.png copying images... [ 68%] examples_built/OR_before.png copying images... [ 69%] examples_built/data.png copying images... [ 69%] examples_built/transformed_trans_2.png copying images... [ 70%] examples_built/deterministic.png copying images... [ 71%] examples_built/n_pts_histogram.png copying images... [ 72%] examples_built/midpoint_feature.png copying images... [ 72%] examples_built/transformed_com_1.png copying images... [ 73%] examples_built/tensor_ellipsoids_restore_noisy.png copying images... [ 74%] examples_built/viz_ui.png copying images... [ 74%] examples_built/odfs.png copying images... [ 75%] examples_built/model_predictions.png copying images... [ 76%] examples_built/fODFs.png copying images... [ 76%] examples_built/csd_odfs.png copying images... [ 77%] examples_built/MAPMRI_norm_laplacian.png copying images... [ 78%] examples_built/all_streamlines_act_classifier.png copying images... [ 79%] examples_built/valid_streamlines_act_classifier.png copying images... [ 79%] examples_built/vector_of_endpoints_feature.png copying images... [ 80%] examples_built/ivim_voxel_plot.png copying images... [ 81%] examples_built/length_histogram.png copying images... [ 81%] examples_built/measured_S0.png copying images... [ 82%] examples_built/gradients.png copying images... [ 83%] examples_built/probabilistic.png copying images... [ 83%] devel/gitwash/forking_button.png copying images... [ 84%] examples_built/ivim_data_slice.png copying images... [ 85%] examples_built/bundle3.png copying images... [ 86%] examples_built/resampled_2.png copying images... [ 86%] examples_built/predicted_S0.png copying images... [ 87%] examples_built/resampled_1.png copying images... [ 88%] examples_built/connectivity.png copying images... [ 88%] examples_built/closest_peak_dg_CSD.png copying images... [ 89%] examples_built/csd_peaks.png copying images... [ 90%] examples_built/_static/stochastic_process.jpg copying images... [ 90%] examples_built/bundle4.png copying images... [ 91%] examples_built/bundle2.png copying images... [ 92%] examples_built/det_streamlines.png copying images... [ 93%] examples_built/In_vivo_free_water_DTI_and_standard_DTI_measures.png copying images... [ 93%] examples_built/after_registration.png copying images... [ 94%] examples_built/t1_slices_res.png copying images... [ 95%] examples_built/cosine_metric.png copying images... [ 95%] examples_built/dsid.png copying images... [ 96%] examples_built/probabilistic_streamlines.png copying images... [ 97%] examples_built/spatial_errors.png copying images... [ 97%] examples_built/tensor_ellipsoids_wls.png copying images... [ 98%] examples_built/bundles_and_3_slices.png copying images... [ 99%] examples_built/transformed_rigid_0.png copying images... [100%] examples_built/transformed_rigid_1.png copying downloadable files... [ 1%] examples_built/viz_slice.py copying downloadable files... [ 3%] examples_built/bundle_registration.py copying downloadable files... [ 5%] examples_built/reconst_dsi_metrics.py copying downloadable files... [ 6%] examples_built/restore_dti.py copying downloadable files... [ 8%] examples_built/introduction_to_basic_tracking.py copying downloadable files... [ 10%] examples_built/contextual_enhancement.py copying downloadable files... [ 11%] examples_built/reconst_shore.py copying downloadable files... [ 13%] examples_built/syn_registration_3d.py copying downloadable files... [ 15%] examples_built/deterministic_fiber_tracking.py copying downloadable files... [ 16%] examples_built/reslice_datasets.py copying downloadable files... [ 18%] examples_built/simulate_dki.py copying downloadable files... [ 20%] examples_built/segment_extending_clustering_framework.py copying downloadable files... [ 22%] examples_built/particle_filtering_fiber_tracking.py copying downloadable files... [ 23%] examples_built/probabilistic_fiber_tracking.py copying downloadable files... [ 25%] examples_built/reconst_fwdti.py copying downloadable files... [ 27%] examples_built/snr_in_cc.py copying downloadable files... [ 28%] examples_built/reconst_forecast.py copying downloadable files... [ 30%] examples_built/kfold_xval.py copying downloadable files... [ 32%] examples_built/reconst_shore_metrics.py copying downloadable files... [ 33%] examples_built/sfm_tracking.py copying downloadable files... [ 35%] examples_built/streamline_tools.py copying downloadable files... [ 37%] examples_built/sfm_reconst.py copying downloadable files... [ 38%] examples_built/reconst_csa.py copying downloadable files... [ 40%] examples_built/viz_advanced.py copying downloadable files... [ 42%] examples_built/linear_fascicle_evaluation.py copying downloadable files... [ 44%] examples_built/combined_workflow_creation.py copying downloadable files... [ 45%] examples_built/viz_bundles.py copying downloadable files... [ 47%] examples_built/segment_clustering_metrics.py copying downloadable files... [ 49%] examples_built/quick_start.py copying downloadable files... [ 50%] examples_built/reconst_csa_parallel.py copying downloadable files... [ 52%] examples_built/affine_registration_3d.py copying downloadable files... [ 54%] examples_built/gradients_spheres.py copying downloadable files... [ 55%] examples_built/reconst_mapmri.py copying downloadable files... [ 57%] examples_built/reconst_csd_parallel.py copying downloadable files... [ 59%] examples_built/workflow_creation.py copying downloadable files... [ 61%] examples_built/denoise_localpca.py copying downloadable files... [ 62%] examples_built/reconst_dti.py copying downloadable files... [ 64%] examples_built/tracking_quick_start.py copying downloadable files... [ 66%] examples_built/reconst_dsi.py copying downloadable files... [ 67%] examples_built/viz_ui.py copying downloadable files... [ 69%] examples_built/simulate_multi_tensor.py copying downloadable files... [ 71%] examples_built/reconst_ivim.py copying downloadable files... [ 72%] examples_built/denoise_nlmeans.py copying downloadable files... [ 74%] examples_built/viz_surfaces.py copying downloadable files... [ 76%] examples_built/reconst_dki.py copying downloadable files... [ 77%] examples_built/tissue_classification.py copying downloadable files... [ 79%] examples_built/reconst_gqi.py copying downloadable files... [ 81%] examples_built/tracking_tissue_classifier.py copying downloadable files... [ 83%] examples_built/brain_extraction_dwi.py copying downloadable files... [ 84%] examples_built/reconst_csd.py copying downloadable files... [ 86%] examples_built/streamline_formats.py copying downloadable files... [ 88%] examples_built/viz_roi_contour.py copying downloadable files... [ 89%] examples_built/fiber_to_bundle_coherence.py copying downloadable files... [ 91%] examples_built/streamline_length.py copying downloadable files... [ 93%] examples_built/segment_clustering_features.py copying downloadable files... [ 94%] examples_built/syn_registration_2d.py copying downloadable files... [ 96%] examples_built/reconst_dsid.py copying downloadable files... [ 98%] examples_built/tracking_bootstrap_peaks.py copying downloadable files... [100%] examples_built/segment_quickbundles.py copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 160 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/<>/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory make[1]: [debian/rules:83: override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/<>/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude 'test_(peaksFromModelParallel|fetcher)' dipy; \ done I: Running Dipy unittests using python2.7 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:11: DeprecationWarning: The `dipy.io.trackvis` module is deprecated as of version 0.14 of Dipy and will be removed in a future version. Please use `dipy.io.streamline` module instead DeprecationWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:45: UserWarning: sklearn is not available, you can use 'nnls' method to fit the SparseFascicleModel warnings.warn(w) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:48: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_1 = np.random.random_integers(20, size=(171, 171, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:51: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_2 = np.random.random_integers(20, size=(114, 114, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_mrf.py:54: DeprecationWarning: This function is deprecated. Please call randint(1, 20 + 1) instead temp_3 = np.random.random_integers(20, size=(58, 58, 3)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/quickbundles.py:10: DeprecationWarning: Class 'dipy.segment.quickbundles.QuickBundles' is deprecated, instead use module 'dipy.segment.clustering.QuickBundles'. warn(DeprecationWarning(deprecation_msg)) /usr/lib/python2.7/dist-packages/nibabel/deprecated.py:35: DeprecationWarning: The trackvis interface has been deprecated and will be removed in v4.0; please use the 'nibabel.streamlines' interface. mod = __import__(self._module_name, fromlist=['']) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_rb.py:11: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = nib.trackvis.read(get_data('fornix')) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/fvtk.py:93: DeprecationWarning: Module 'dipy.viz.fvtk' is deprecated as of version 0.14 of dipy and will be removed in a future version. Please, instead use module 'dipy.viz.window' or 'dipy.viz.actor'. warn(DeprecationWarning(deprecation_msg)) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/docstring_parser.py:151: UserWarning: Unknown section Yields warn("Unknown section %s" % key) Set numpy print options to "legacy" for new versions of numpy ... ok Compares the output of the optimized function to compute the cross- ... ok Compares the output of the optimized function to compute the cross- ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_2d ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_expectmax.test_quantize_positive_2d ... ok dipy.align.tests.test_expectmax.test_quantize_positive_3d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_2d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_3d ... ok dipy.align.tests.test_imaffine.test_transform_centers_of_mass_3d ... ok dipy.align.tests.test_imaffine.test_transform_geometric_centers_3d ... ok dipy.align.tests.test_imaffine.test_transform_origins_3d ... ok dipy.align.tests.test_imaffine.test_affreg_all_transforms ... ok dipy.align.tests.test_imaffine.test_affreg_defaults ... ok dipy.align.tests.test_imaffine.test_mi_gradient ... ok dipy.align.tests.test_imaffine.test_affine_map ... ok dipy.align.tests.test_imaffine.test_MIMetric_invalid_params ... ok Test matrix multiplication using None as identity ... ok Test 2D DiffeomorphicMap ... ok Test simplification of 2D diffeomorphic maps ... ok Test simplification of 3D diffeomorphic maps ... ok Test exceptions from SyN ... ok Test direction and spacings from affine transforms ... ok Test 2D SyN with SSD metric, demons-like optimizer ... Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 2)>>0.995530 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 3)>>0.980609 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 2)>>0.998987 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 3)>>0.999780 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 2)>>0.999884 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 3)>>0.999642 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 2)>>0.994974 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 3)>>0.993367 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 2)>>0.997435 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 3)>>0.999297 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 148.967083 148.967083 297.934166 inf 2: 140.803789 140.803789 281.607578 inf 3: 132.911776 132.911776 265.823552 inf 4: 123.231998 123.231998 246.463996 inf 5: 114.722137 114.722137 229.444274 inf 6: 107.066896 107.066896 214.133792 inf 7: 102.035946 102.035946 204.071893 inf 8: 96.646769 96.646769 193.293539 inf 9: 89.674511 89.674511 179.349022 inf 10: 81.181186 81.181186 162.362373 inf 11: 75.765549 75.765549 151.531097 inf 12: 71.448292 71.448292 142.896584 0.00527899988007 13: 68.103006 68.103006 136.206013 0.00538550965452 14: 64.868980 64.868980 129.737959 0.00538218046988 15: 62.594987 62.594987 125.189974 0.00529894946063 16: 58.781530 58.781530 117.563061 0.00510649757567 17: 56.599954 56.599954 113.199908 0.00495917428724 18: 53.238663 53.238663 106.477326 0.00476453916401 19: 51.677319 51.677319 103.354637 0.00461570235729 20: 49.654630 49.654630 99.309260 0.00435744276489 21: 49.086610 49.086610 98.173219 0.00406536793558 22: 47.099344 47.099344 94.198688 0.00370474197522 23: 46.583474 46.583474 93.166947 0.00347969318934 24: 44.167168 44.167168 88.334336 0.00321263357 25: 44.104985 44.104985 88.209970 0.00306886709413 26: 41.818023 41.818023 83.636045 0.00281824246091 27: 42.280232 42.280232 84.560465 0.00269598499568 28: 40.373052 40.373052 80.746105 0.00241256012859 29: 40.929610 40.929610 81.859220 0.00229634961143 30: 38.793845 38.793845 77.587689 0.00204198505707 31: 39.270995 39.270995 78.541989 0.00201000574156 32: 37.058360 37.058360 74.116720 0.00184071553129 33: 37.857091 37.857091 75.714183 0.00187293199021 34: 35.392437 35.392437 70.784874 0.00169407995287 35: 36.346426 36.346426 72.692851 0.00176889705731 36: 33.366239 33.366239 66.732478 0.00161080093475 37: 34.626742 34.626742 69.253484 0.00180605132828 38: 31.657367 31.657367 63.314735 0.0016914977918 39: 33.291129 33.291129 66.582258 0.00193633290358 40: 30.898133 30.898133 61.796266 0.00178237272845 41: 32.607017 32.607017 65.214034 0.00191967089908 42: 30.491504 30.491504 60.983008 0.0016517490361 43: 32.109378 32.109378 64.218757 0.0016898086724 44: 29.815571 29.815571 59.631141 0.00135709730927 45: 31.568083 31.568083 63.136166 0.0013985576047 46: 29.123265 29.123265 58.246531 0.00103998890008 47: 30.770408 30.770408 61.540816 0.00112625282202 48: 28.418644 28.418644 56.837288 0.000819511234019 49: 29.972895 29.972895 59.945790 0.000995705090764 50: 27.698656 27.698656 55.397311 0.00076736407729 51: 29.073094 29.073094 58.146188 0.00102008914041 52: 26.763330 26.763330 53.526661 0.000858652912575 53: 28.288509 28.288509 56.577018 0.00114774523808 54: 25.746360 25.746360 51.492719 0.000975503675358 55: 26.884162 26.884162 53.768324 0.0012793858367 56: 24.717957 24.717957 49.435913 0.00116608249708 57: 25.901026 25.901026 51.802052 0.00147188474166 58: 23.963039 23.963039 47.926078 0.00132526187303 59: 25.099463 25.099463 50.198926 0.00158083841384 60: 23.193360 23.193360 46.386721 0.00139065492415 61: 24.386859 24.386859 48.773718 0.00160895835456 62: 22.611271 22.611271 45.222542 0.00136961720352 63: 23.876843 23.876843 47.753687 0.00153373091018 64: 22.131407 22.131407 44.262814 0.00123948301271 65: 23.519755 23.519755 47.039510 0.00137667185749 66: 21.740880 21.740880 43.481759 0.00102354546002 67: 23.119252 23.119252 46.238504 0.00116204426004 68: 21.285781 21.285781 42.571561 0.000844377664161 69: 22.573415 22.573415 45.146830 0.00102400767016 70: 20.835956 20.835956 41.671912 0.000756085795823 71: 22.050003 22.050003 44.100006 0.000960452037311 72: 20.359157 20.359157 40.718314 0.000729029000643 73: 21.396385 21.396385 42.792770 0.000967179992043 74: 19.820145 19.820145 39.640291 0.000789889473626 75: 20.853081 20.853081 41.706162 0.00104776062771 76: 19.226410 19.226410 38.452820 0.000871938852999 77: 20.282975 20.282975 40.565949 0.00114519754721 78: 18.780418 18.780418 37.560835 0.000953458299441 79: 19.778684 19.778684 39.557367 0.00119538030538 80: 18.143018 18.143018 36.286036 0.000978928876588 81: 18.828017 18.828017 37.656035 0.00124299017434 82: 17.668429 17.668429 35.336858 0.00110885466375 83: 19.415921 19.415921 38.831841 0.00133024281828 84: 17.051038 17.051038 34.102076 0.000913759920698 85: 16.619848 16.619848 33.239695 0.00120187286006 86: 17.293308 17.293308 34.586617 0.00135632192787 87: 17.815203 17.815203 35.630406 0.00136692276234 88: 16.640003 16.640003 33.280006 0.00106282049247 89: 17.991137 17.991137 35.982274 0.00117793266786 90: 16.131120 16.131120 32.262239 0.000751051227668 91: 16.370016 16.370016 32.740031 0.000951135560635 92: 16.199847 16.199847 32.399694 0.000876873040526 93: 17.504184 17.504184 35.008369 0.000951221590937 94: 15.698957 15.698957 31.397914 0.00053919547292 95: 16.084202 16.084202 32.168405 0.000748667247763 96: 15.853598 15.853598 31.707196 0.000569608973729 97: 17.302775 17.302775 34.605550 0.000679481578953 98: 15.494944 15.494944 30.989888 0.000393130376687 99: 16.045990 16.045990 32.091981 0.000551128672537 100: 15.630108 15.630108 31.260216 0.000424385859123 101: 17.241174 17.241174 34.482347 0.000522482150708 102: 15.251093 15.251093 30.502186 -2.29802447386e-05 Optimizing level 2 0: 74.290556 74.290556 148.581112 inf 1: 65.015793 65.015793 130.031586 inf 2: 59.611216 59.611216 119.222432 inf 3: 53.826691 53.826691 107.653382 inf 4: 47.584710 47.584710 95.169420 inf 5: 42.297312 42.297312 84.594624 inf 6: 36.517890 36.517890 73.035780 inf 7: 31.937406 31.937406 63.874812 inf 8: 28.283323 28.283323 56.566645 inf 9: 25.003997 25.003997 50.007993 inf 10: 22.324304 22.324304 44.648609 inf 11: 20.066776 20.066776 40.133553 inf 12: 18.533495 18.533495 37.066990 0.00919141899975 13: 17.121314 17.121314 34.242627 0.00912326877835 14: 15.676540 15.676540 31.353080 0.0089919849546 15: 14.278554 14.278554 28.557107 0.00872175330265 16: 14.582644 14.582644 29.165288 0.00837354059119 17: 13.065652 13.065652 26.131303 0.0076859581614 18: 13.057735 13.057735 26.115471 0.00710031971594 19: 10.814711 10.814711 21.629421 0.00637607410329 20: 10.758914 10.758914 21.517828 0.00614579678982 21: 9.923788 9.923788 19.847575 0.00577585031169 22: 10.233903 10.233903 20.467807 0.00556011248469 23: 9.282571 9.282571 18.565142 0.00511103746763 24: 9.541566 9.541566 19.083133 0.00491798671121 25: 8.154970 8.154970 16.309941 0.00446474203148 26: 8.682739 8.682739 17.365478 0.00446694558193 27: 7.646766 7.646766 15.293531 0.00410821577414 28: 7.557272 7.557272 15.114545 0.00415674645387 29: 7.065931 7.065931 14.131861 0.00388842490695 30: 6.848078 6.848078 13.696156 0.00383896012883 31: 6.452539 6.452539 12.905078 0.00361944835046 32: 6.531736 6.531736 13.063472 0.00377741011676 33: 6.564872 6.564872 13.129744 0.00362549087654 34: 6.037906 6.037906 12.075811 0.00339017554345 35: 6.496041 6.496041 12.992082 0.00320550380436 36: 6.027389 6.027389 12.054777 0.00271759451331 37: 6.144288 6.144288 12.288575 0.0023322198218 38: 5.685273 5.685273 11.370546 0.00205906926165 39: 6.442785 6.442785 12.885571 0.00183869431901 40: 6.146309 6.146309 12.292619 0.00122699481261 41: 6.121630 6.121630 12.243261 0.000847612715926 42: 6.200868 6.200868 12.401737 0.000600125863798 43: 6.055458 6.055458 12.110915 0.000340265468711 44: 5.703834 5.703834 11.407668 0.00030678648918 45: 6.056755 6.056755 12.113509 0.000473746756511 46: 5.67ok Test 2D SyN with SSD metric, Gauss-Newton optimizer ... 2093 5.672093 11.344186 0.000295893465668 47: 5.664513 5.664513 11.329026 0.000560870417673 48: 5.196660 5.196660 10.393319 0.000607114616462 49: 5.625515 5.625515 11.251029 0.00108794944673 50: 5.303695 5.303695 10.607390 0.00105646075198 51: 5.341266 5.341266 10.682532 0.00135977637964 52: 4.859862 4.859862 9.719723 0.00127525712119 53: 5.426533 5.426533 10.853065 0.00158332975312 54: 5.351066 5.351066 10.702131 0.00128066006995 55: 4.922220 4.922220 9.844441 0.000982181280029 56: 4.571653 4.571653 9.143306 0.00105238882326 57: 5.147695 5.147695 10.295391 0.00142943972247 58: 5.345081 5.345081 10.690163 0.00102877335408 59: 4.509232 4.509232 9.018464 0.000583454043885 60: 4.732410 4.732410 9.464820 0.000890630047285 61: 4.850926 4.850926 9.701851 0.00103342867631 62: 5.302123 5.302123 10.604247 0.000827956284633 63: 4.475731 4.475731 8.951461 0.000312479219477 64: 4.627441 4.627441 9.254883 0.000587013551999 65: 5.001642 5.001642 10.003284 0.000794239881186 66: 5.801754 5.801754 11.603509 0.000368337891128 67: 4.411494 4.411494 8.822987 -0.000694111663171 Optimizing level 1 0: 38.912106 38.912106 77.824212 inf 1: 25.466380 25.466380 50.932760 inf 2: 20.851511 20.851511 41.703022 inf 3: 17.814165 17.814165 35.628330 inf 4: 23.914068 23.914068 47.828135 inf 5: 16.551465 16.551465 33.102931 inf 6: 20.446164 20.446164 40.892327 inf 7: 18.003453 18.003453 36.006907 inf 8: 18.093350 18.093350 36.186699 inf 9: 17.494686 17.494686 34.989372 inf 10: 18.245524 18.245524 36.491049 inf 11: 16.584391 16.584391 33.168783 inf 12: 18.950994 18.950994 37.901988 0.00374950413956 13: 16.330192 16.330192 32.660384 0.00167314697969 14: 19.808867 19.808867 39.617734 0.00137142388795 15: 15.943090 15.943090 31.886181 0.000558769114542 16: 20.679620 20.679620 41.359241 0.00108104802711 17: 15.444992 15.444992 30.889984 -0.000337991809393 Optimizing level 0 0: 89.788175 89.788175 179.576350 inf 1: 72.386648 72.386648 144.773297 inf 2: 63.961954 63.961954 127.923909 inf 3: 60.059224 60.059224 120.118448 inf 4: 56.809619 56.809619 113.619238 inf 5: 54.282373 54.282373 108.564746 inf 6: 52.475773 52.475773 104.951547 inf 7: 50.748164 50.748164 101.496329 inf 8: 49.683851 49.683851 99.367701 inf 9: 48.277248 48.277248 96.554496 inf 10: 47.429569 47.429569 94.859139 inf 11: 45.924734 45.924734 91.849468 inf 12: 45.128395 45.128395 90.256791 0.00382382965963 13: 43.723176 43.723176 87.446352 0.00294031177635 14: 42.832787 42.832787 85.665574 0.00252238576117 15: 41.847219 41.847219 83.694438 0.00229664040983 16: 40.659466 40.659466 81.318931 0.00214312169842 17: 40.719777 40.719777 81.439554 0.00207337965114 18: 38.400011 38.400011 76.800022 0.00194282025164 19: 39.790873 39.790873 79.581745 0.00199064869458 20: 37.197870 37.197870 74.395740 0.0018058897347 21: 38.910807 38.910807 77.821613 0.00183510555002 22: 36.919635 36.919635 73.839270 0.0015940689436 23: 38.595499 38.595499 77.190998 0.00152688931263 24: 36.542166 36.542166 73.084331 0.00122909050091 Static-Reference Residual error: 0.006087 (0.000200) Moving-Reference Residual error :0.005779 (0.000193) Final residual error: 0.150087 (0.114041) Pre-align: [[ 1. 0. 0.] [ 0. 1. 0.] [ 0. 0. 1.]] Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 140.425137 140.425137 280.850273 inf 2: 122.632717 122.632717 245.265433 inf 3: 107.533624 107.533624 215.067248 inf 4: 95.957127 95.957127 191.914253 inf 5: 82.847331 82.847331 165.694663 inf 6: 71.216589 71.216589 142.433178 inf 7: 63.804336 63.804336 127.608672 inf 8: 54.921843 54.921843 109.843686 inf 9: 45.509380 45.509380 91.018760 inf 10: 39.685490 39.685490 79.370980 inf 11: 35.088915 35.088915 70.177829 inf 12: 29.560406 29.560406 59.120811 0.010252829077 13: 25.559514 25.559514 51.119027 0.0104618755948 14: 22.480701 22.480701 44.961402 0.0106048525408 15: 19.647836 19.647836 39.295672 0.0107012313567 16: 17.523070 17.523070 35.046140 0.0107498586809 17: 15.908172 15.908172 31.816345 0.0106623349075 18: 14.573980 14.573980 29.147960 0.010479013914 19: 12.763208 12.763208 25.526415 0.0101981845737 20: 11.607060 11.607060 23.214120 0.00984243504571 21: 11.126164 11.126164 22.252327 0.00943413139255 22: 10.633993 10.633993 21.267985 0.00896270115565 23: 10.981419 10.981419 21.962837 0.00834213382859 24: 12.486148 12.486148 24.972296 0.00733610524607 25: 14.950756 14.950756 29.901511 0.0057713218819 26: 12.711562 12.711562 25.423124 0.0034201470646 27: 13.592291 13.592291 27.184581 0.00206555283763 28: 12.457476 12.457476 24.914953 0.000649771248252 29: 13.910016 13.910016 27.820032 -5.3336298664e-05 Optimizing level 2 0: 62.012023 62.012023 124.024046 inf 1: 57.608695 57.608695 115.217391 inf 2: 50.163408 50.163408 100.326816 inf 3: 48.258825 48.258825 96.517651 inf 4: 42.910077 42.910077 85.820154 inf 5: 43.092702 43.092702 86.185405 inf 6: 37.356138 37.356138 74.712277 inf 7: 39.345178 39.345178 78.690355 inf 8: 32.612040 32.612040 65.224081 inf 9: 33.950967 33.950967 67.901934 inf 10: 30.066702 30.066702 60.133404 inf 11: 32.152520 32.152520 64.305040 inf 12: 27.291334 27.291334 54.582667 0.00495239461651 13: 28.884324 28.884324 57.768648 0.00480841994351 14: 25.574756 25.574756 51.149513 0.00427792989912 15: 28.284760 28.284760 56.569519 0.00423219188609 16: 21.608105 21.608105 43.216210 0.00358290933766 17: 24.990330 24.990330 49.980660 0.0039721631871 18: 19.060929 19.060929 38.121859 0.00348681850113 19: 23.405615 23.405615 46.811229 0.00406538842864 20: 16.374277 16.374277 32.748554 0.00343112180675 21: 22.471316 22.471316 44.942633 0.00427949141907 22: 15.142822 15.142822 30.285644 0.00350993672073 23: 18.812566 18.812566 37.625132 0.00428223019456 24: 15.572387 15.572387 31.144774 0.00377012275916 25: 18.989717 18.989717 37.979435 0.00409652159298 26: 12.563007 12.563007 25.126014 0.00321852083642 27: 19.860278 19.860278 39.720555 0.00397062693791 28: 11.327367 11.327367 22.654734 0.00232713016822 29: 16.703347 16.703347 33.406695 0.00343672558686 30: 13.246412 13.246412 26.492824 0.00242047322107 31: 18.657200 18.657200 37.314400 0.00285527275298 32: 11.15942ok Test 3D SyN with SSD metric, demons-like optimizer ... ok Test 3D SyN with SSD metric, Gauss-Newton optimizer ... 4 11.159424 22.318848 0.00110598219039 33: 20.107469 20.107469 40.214939 0.00233838854685 34: 10.352170 10.352170 20.704340 1.43461523674e-05 Optimizing level 1 0: 90.775416 90.775416 181.550833 inf 1: 37.412124 37.412124 74.824248 inf 2: 21.795879 21.795879 43.591758 inf 3: 17.765190 17.765190 35.530380 inf 4: 30.941695 30.941695 61.883391 inf 5: 20.599033 20.599033 41.198066 inf 6: 30.751267 30.751267 61.502534 inf 7: 23.840049 23.840049 47.680098 inf 8: 33.390261 33.390261 66.780522 inf 9: 29.931066 29.931066 59.862131 inf 10: 38.364360 38.364360 76.728721 inf 11: 38.408999 38.408999 76.817999 inf 12: 42.462657 42.462657 84.925315 0.000852985832982 13: 42.568847 42.568847 85.137694 -0.00457794344922 Optimizing level 0 0: 149.179101 149.179101 298.358202 inf 1: 70.589630 70.589630 141.179260 inf 2: 63.765392 63.765392 127.530784 inf 3: 77.008826 77.008826 154.017652 inf 4: 65.184053 65.184053 130.368106 inf 5: 71.403520 71.403520 142.807040 inf 6: 72.169687 72.169687 144.339373 inf 7: 61.295376 61.295376 122.590752 inf 8: 75.571575 75.571575 151.143149 inf 9: 57.851226 57.851226 115.702452 inf 10: 75.645127 75.645127 151.290253 inf 11: 57.021093 57.021093 114.042186 inf 12: 74.196115 74.196115 148.392230 0.00294025482222 13: 57.172744 57.172744 114.345489 0.000245624670102 14: 73.288365 73.288365 146.576730 0.000859322092341 15: 57.465568 57.465568 114.931137 0.000421728000509 16: 72.067407 72.067407 144.134814 0.000743482531574 17: 57.918102 57.918102 115.836204 0.000279270174605 18: 70.539113 70.539113 141.078226 0.000668305394381 19: 58.726110 58.726110 117.452220 4.96306091163e-05 Static-Reference Residual error: 0.043585 (0.079055) Moving-Reference Residual error :0.006365 (0.000241) Final residual error: 1.517625 (13.247415) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 156.113535 156.113535 312.227070 inf 1: 123.101970 123.101970 246.203940 inf 2: 94.813457 94.813457 189.626914 inf 3: 69.683699 69.683699 139.367399 inf 4: 47.661910 47.661910 95.323821 inf 5: 30.866788 30.866788 61.733576 inf 6: 17.763339 17.763339 35.526678 inf 7: 8.411990 8.411990 16.823979 inf 8: 3.891055 3.891055 7.782110 inf 9: 4.959660 4.959660 9.919320 inf Optimizing level 0 0: 76.038665 76.038665 152.077330 inf 1: 61.612263 61.612263 123.224526 inf 2: 52.860473 52.860473 105.720946 inf 3: 47.723657 47.723657 95.447314 inf 4: 46.505674 46.505674 93.011348 inf 5: 42.210350 42.210350 84.420699 inf 6: 43.017314 43.017314 86.034628 inf 7: 39.132343 39.132343 78.264685 inf 8: 40.206340 40.206340 80.412680 inf 9: 37.688452 37.688452 75.376903 inf Static-Reference Residual error: 0.003570 (0.000018) Moving-Reference Residual error :0.003491 (0.000019) Final residual error: 0.004780 (0.000069) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.50ok Test 2D SyN with CC metric ... 0000. Moving scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 174.160236 174.160236 348.320472 inf 1: 129.301704 129.301704 258.603408 inf 2: 90.003685 90.003685 180.007370 inf 3: 62.023355 62.023355 124.046710 inf 4: 44.031650 44.031650 88.063299 inf 5: 30.138086 30.138086 60.276171 inf 6: 19.769586 19.769586 39.539172 inf 7: 12.200864 12.200864 24.401729 inf 8: 7.030179 7.030179 14.060358 inf 9: 3.932382 3.932382 7.864764 inf Optimizing level 0 0: 50.431442 50.431442 100.862884 inf 1: 42.406260 42.406260 84.812520 inf 2: 34.634311 34.634311 69.268623 inf 3: 27.499934 27.499934 54.999868 inf 4: 22.276123 22.276123 44.552247 inf 5: 18.144580 18.144580 36.289159 inf 6: 14.831777 14.831777 29.663554 inf 7: 12.606380 12.606380 25.212759 inf 8: 14.068776 14.068776 28.137552 inf 9: 13.291412 13.291412 26.582824 inf Static-Reference Residual error: 0.002930 (0.000043) Moving-Reference Residual error :0.002968 (0.000045) Final residual error: 0.004095 (0.000111) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Optimizing level 1 0: -2470.850522 -2470.850522 -4941.701045 inf 1: -2809.035391 -2809.035391 -5618.070783 inf 2: -3097.929180 -3097.929180 -6195.858360 inf 3: -3314.948446 -3314.948446 -6629.896893 inf 4: -3487.392000 -3487.392000 -6974.784000 inf 5: -3687.198100 -3687.198100 -7374.396200 inf 6: -3901.419800 -3901.419800 -7802.839600 inf 7: -4062.786802 -4062.786802 -8125.573603 inf 8: -4204.035022 -4204.035022 -8408.070044 inf 9: -4317.120683 -4317.120683 -8634.241367 inf 10: -4400.328948 -4400.328948 -8800.657896 inf 11: -4472.480246 -4472.480246 -8944.960493 inf 12: -4533.762530 -4533.762530 -9067.525059 0.00381066805446 13: -4576.180550 -4576.180550 -9152.361100 0.00317135627435 14: -4601.501231 -4601.501231 -9203.002462 0.00264119987365 Optimizing level 0 0: -15604.348537 -15604.348537 -31208.697075 inf 1: -15735.173699 -15735.173699 -31470.347397 inf 2: -15827.193833 -15827.193833 -31654.387667 inf 3: -15919.901145 -15919.901145 -31839.802290 inf 4: -15989.430778 -15989.430778 -31978.861557 inf Static-Reference Residual error: 0.002058 (0.000017) Moving-Reference Residual erok Test 3D SyN with CC metric ... ok Test 3D SyN with EM metric, Gauss-Newton optimizer ... ror :0.002026 (0.000016) Final residual error: 0.002855 (0.000047) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Optimizing level 1 0: -23248.088838 -23248.088838 -46496.177675 inf 1: -24224.696019 -24224.696019 -48449.392038 inf 2: -24643.553653 -24643.553653 -49287.107306 inf 3: -25094.155774 -25094.155774 -50188.311549 inf 4: -25644.508102 -25644.508102 -51289.016205 inf 5: -25976.564449 -25976.564449 -51953.128897 inf 6: -26277.148890 -26277.148890 -52554.297779 inf 7: -26571.473989 -26571.473989 -53142.947978 inf 8: -26837.096492 -26837.096492 -53674.192983 inf 9: -27059.015230 -27059.015230 -54118.030459 inf 10: -27254.823759 -27254.823759 -54509.647518 inf 11: -27475.594624 -27475.594624 -54951.189248 inf 12: -27651.003730 -27651.003730 -55302.007460 0.00107625477996 13: -27780.836871 -27780.836871 -55561.673741 0.000925917105584 14: -27897.549180 -27897.549180 -55795.098360 0.000819951957575 15: -27998.179038 -27998.179038 -55996.358076 0.000717260043572 16: -28058.257200 -28058.257200 -56116.514399 0.000623883512661 17: -28083.805034 -28083.805034 -56167.610068 0.000545604426886 18: -28113.886520 -28113.886520 -56227.773040 0.000465642827482 19: -28137.110925 -28137.110925 -56274.221850 0.000388625806647 Optimizing level 0 0: -147007.938166 -147007.938166 -294015.876333 inf 1: -150063.452192 -150063.452192 -300126.904385 inf 2: -152207.966403 -152207.966403 -304415.932807 inf 3: -153752.679211 -153752.679211 -307505.358421 inf 4: -155053.651264 -155053.651264 -310107.302529 inf Static-Reference Residual error: 0.003305 (0.000081) Moving-Reference Residual error :0.003028 (0.000066) Final residual error: 0.005146 (0.000277) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 346.480775 342.803728 ok Test 2D SyN with EM metric, Gauss-Newton optimizer ... 689.284503 inf 1: 291.387629 292.951455 584.339084 inf 2: 251.682942 253.268585 504.951528 inf 3: 220.268379 218.766441 439.034821 inf 4: 186.456667 188.759555 375.216221 inf 5: 156.027207 156.095939 312.123146 inf 6: 128.952326 129.553044 258.505371 inf 7: 107.871496 109.416210 217.287706 inf 8: 93.687748 94.423586 188.111335 inf 9: 75.719577 75.959740 151.679317 inf 10: 60.604062 59.972737 120.576799 inf 11: 47.657916 46.727237 94.385152 inf 12: 35.067674 34.857153 69.924828 0.0124416621864 13: 25.137568 24.898353 50.035920 0.0129676855244 14: 16.992224 16.449361 33.441585 0.0136564740868 15: 9.936353 9.778687 19.715040 0.0144770256657 16: 4.827531 4.750854 9.578385 0.0154411093841 17: 2.230326 2.199181 4.429507 0.0165796024745 18: 1.458671 1.449032 2.907703 0.0178212497093 19: 1.010245 0.989828 2.000073 0.0189992392677 Optimizing level 0 0: 77.023557 51.344867 128.368424 inf 1: 59.828332 44.860948 104.689280 inf 2: 41.248681 35.836200 77.084881 inf 3: 36.425559 31.516029 67.941588 inf 4: 32.503329 27.049229 59.552558 inf Static-Reference Residual error: 0.004785 (0.000102) Moving-Reference Residual error :0.004837 (0.000109) Final residual error: 0.004511 (0.000167) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.260563 25.935777 51.196341 inf 1: 24.291909 24.782446 49.074355 inf 2: 21.905502 19.816674 41.722175 inf 3: 16.319558 16.287693 32.607251 inf 4: 15.510241 15.323561 30.833801 inf 5: 12.833022 10.664176 23.497198 inf 6: 6.911958 6.402278 13.314236 inf 7: 4.227105 4.539786 8.766891 inf 8: 2.875194 2.799543 5.674737 inf 9: 1.028632 1.103500 2.132132 inf 10: 0.385111 0.588306 0.973417 inf 11: 0.378783 0.469470 0.848253 inf 12: 0.315450 0.249531 0.564981 0.0187608292452 13: 0.277854 0.216360 0.494215 0.0200900051085 14: 0.176018 0.178722 0.354740 0.021042563693 15: 0.226428 0.172354 0.398782 0.0217646576751 16: 0.193429 0.146379 0.339808 0.0221198183291 17: 0.210851 0.177178 0.388029 0.021910199917 18: 0.168833 0.142166 0.310999 0.0208909271489 19: 0.213690 0.232610 0.446300 0.019370254433 20: 0.206625 0.174062 0.380687 0.0157523208246 21: 0.204801 0.166812 0.371613 0.0097824020566 22: 0.181652 0.149366 0.331018 0.00556522091684 23: 0.191620 0.185595 0.377215 0.00392923926685 24: 0.139017 0.145247 0.284264 0.00173381961047 25: 0.148625 0.144926 0.293551 0.00175008710592 26: 0.128109 0.135598 0.263706 0.00175560083872 27: 0.174627 0.149750 0.324377 0.00267066204631 28: 0.142036 0.134526 0.276562 0.00226999175811 29: 0.122272 0.137869 0.260141 0.00275268243216 30: 0.163944 0.168988 0.332932 0.00299674337458 31: 0.167924 0.167596 0.335521 0.0023ok Test 3D SyN with EM metric, demons-like optimizer ... ok Test 2D SyN with EM metric, demons-like optimizer ... 7499271178 32: 0.069629 0.070374 0.140003 0.000992499624133 33: 0.239107 0.184427 0.423534 0.00291081159258 34: 0.079618 0.076774 0.156393 3.45886473741e-05 35: 0.173560 0.134339 0.307899 0.00193756509626 36: 0.112290 0.111505 0.223795 0.000682447101412 37: 0.188214 0.174066 0.362280 0.00149882678269 38: 0.163520 0.150707 0.314228 -0.000178846953538 Optimizing level 1 0: 1.477601 1.834135 3.311737 inf 1: 0.613078 0.678346 1.291423 inf 2: 0.284192 0.367917 0.652109 inf 3: 0.187872 0.262230 0.450102 inf 4: 0.249390 0.355520 0.604910 inf 5: 0.167028 0.262589 0.429617 inf 6: 0.202379 0.308202 0.510581 inf 7: 0.200272 0.280100 0.480372 inf 8: 0.154977 0.242965 0.397942 inf 9: 0.198616 0.255642 0.454258 inf 10: 0.230599 0.326606 0.557205 inf 11: 0.160764 0.252772 0.413535 inf 12: 0.192539 0.314746 0.507285 0.0102620247556 13: 0.171962 0.262405 0.434367 0.00380144758351 14: 0.200825 0.313239 0.514065 0.00129101294205 15: 0.166312 0.273830 0.440142 0.000107784842564 16: 0.195599 0.301750 0.497349 0.000518787928866 17: 0.179402 0.307682 0.487083 -0.000326039680192 Optimizing level 0 0: 2.983856 5.711043 8.694899 inf 1: 2.154124 4.560874 6.714998 inf 2: 1.615139 3.844358 5.459497 inf 3: 1.376558 3.277199 4.653757 inf 4: 1.095767 3.084534 4.180301 inf 5: 1.138235 3.183364 4.321599 inf 6: 1.045878 2.843516 3.889393 inf 7: 1.096712 3.010231 4.106942 inf 8: 0.995354 3.213219 4.208573 inf 9: 0.976629 3.010960 3.987589 inf Static-Reference Residual error: 0.004724 (0.000110) Moving-Reference Residual error :0.006575 (0.000223) Final residual error: 0.007238 (0.000287) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 342.803728 346.480775 689.284503 inf 1: 294.194338 290.386191 584.580529 inf 2: 251.942413 258.204846 510.147259 inf 3: 213.718215 213.491888 427.210103 inf 4: 178.992074 177.054144 356.046218 inf 5: 145.964458 144.012093 289.976551 inf 6: 117.308107 114.614284 231.922392 inf 7: 93.398066 92.001113 185.399178 inf 8: 71.062389 71.677017 142.739406 inf 9: 54.763078 55.194581 109.957659 inf 10: 41.625876 42.340150 83.966026 inf 11: 31.302602 31.813441 63.116043 inf 12: 23.109386 23.069243 46.178629 0.0143800566419 13: 17.080358 17.013836 34.094194 0.0150350600581 14: 13.136382 12.864992 26.001373 0.0156790496389 15: 9.966760 9.911333 19.878093 0.0161907007735 16: 7.485426 7.437708 14.923134 0.0166142452444 17: 5.874618 5.813791 11.688409 0.0169438572598 18: 5.100472 5.091774 10.192245 0.0171595172394 19: 4.583876 4.570155 9.154031 0.017171595066 Optimizing level 0 0: 192.403108 249.268238 441.671346 inf 1: 165.008176 200.632996 365.641172 inf 2: 153.045650 180.948084 333.993734 inf 3: 143.325868 171.379118 314.704986 inf 4: 134.201697 167.870739 302.072436 inf Static-Reference Residual error: 0.006306 (0.000139) Moving-Reference Residual error :0.006403 (0.000158) Final residual error: 0.005806 (0.000453) Pre-align: None Applying zero mask: False Creating scale ok dipy.align.tests.test_metrics.test_exceptions ... ok dipy.align.tests.test_metrics.test_EMMetric_image_dynamics ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_parzenhist.test_cubic_spline ... ok dipy.align.tests.test_parzenhist.test_cubic_spline_derivative ... ok dipy.align.tests.test_parzenhist.test_parzen_joint_histogram ... ok dipy.align.tests.test_parzenhist.test_parzen_densities ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_dense ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_sparse ... ok dipy.align.tests.test_parzenhist.test_sample_domain_regular ... ok dipy.align.tests.test_parzenhist.test_exceptions ... ok dipy.align.tests.test_reslice.test_resample ... space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.935777 25.260563 51.196340 inf 1: 27.037444 20.694161 47.731605 inf 2: 13.784599 17.400170 31.184769 inf 3: 9.943231 10.510352 20.453583 inf 4: 6.479765 6.347510 12.827275 inf 5: 3.138036 3.538555 6.676591 inf 6: 1.532194 1.621278 3.153472 inf 7: 0.446067 0.399313 0.845380 inf 8: 0.583351 0.477470 1.060821 inf 9: 0.266033 0.259799 0.525833 inf 10: 0.371924 0.350806 0.722730 inf 11: 0.283530 0.247474 0.531004 inf 12: 0.390005 0.335070 0.725075 0.022105666329 13: 0.257404 0.309310 0.566714 0.0222740837463 14: 0.361977 0.354586 0.716564 0.0218649989799 15: 0.283879 0.263841 0.547720 0.0205758048888 16: 0.338481 0.338796 0.677277 0.0182851829331 17: 0.243377 0.273285 0.516661 0.0134650633629 18: 0.366438 0.300859 0.667297 0.00775868445447 19: 0.240609 0.259311 0.499920 0.00206424400761 20: 0.313077 0.325632 0.638709 0.00223166940837 21: 0.252695 0.254945 0.507640 0.000519703258837 22: 0.298032 0.316239 0.614271 0.00145529797612 23: 0.235446 0.276002 0.511448 0.000782973551759 24: 0.356744 0.346785 0.703530 0.001505628349 25: 0.259406 0.256541 0.515947 4.22152051242e-06 Optimizing level 1 0: 2.950720 2.337735 5.288455 inf 1: 1.651256 1.349698 3.000953 inf 2: 0.978115 0.760163 1.738278 inf 3: 0.790510 0.634077 1.424586 inf 4: 0.672293 0.519591 1.191884 inf 5: 0.657691 0.527421 1.185113 inf 6: 0.622871 0.497417 1.120288 inf 7: 0.619107 0.443264 1.062371 inf 8: 0.619072 0.438562 1.057634 inf 9: 0.563152 0.448253 1.011405 inf 10: 0.554405 0.430310 0.984715 inf 11: 0.655662 0.483635 1.139297 inf 12: 0.527491 0.396651 0.924142 0.0090064212874 13: 0.737689 0.556839 1.294528 0.00545306326781 14: 0.565609 0.409699 0.975308 0.00177170347507 15: 0.699229 0.518343 1.217572 0.00108968287617 16: 0.597859 0.431830 1.029689 -0.000181669569391 Optimizing level 0 0: 7.930473 4.096100 12.026574 inf 1: 6.012558 2.823702 8.836260 inf 2: 5.036567 2.097261 7.133827 inf 3: 4.538623 1.906303 6.444926 inf 4: 4.705374 1.814206 6.519580 inf 5: 4.348109 1.692144 6.040253 inf 6: 3.663005 1.673572 5.336577 inf 7: 3.363903 1.578398 4.942300 inf 8: 3.282773 1.626761 4.909534 inf 9: 3.211800 1.580829 4.792628 inf Static-Reference Residual error: 0.003703 (0.000049) Moving-Reference Residual error :0.003852 (0.000051) Final residual error: 0.004433 (0.000087) ok dipy.align.tests.test_scalespace.test_scale_space ... ok dipy.align.tests.test_scalespace.test_scale_space_exceptions ... ok dipy.align.tests.test_streamlinear.test_rigid_parallel_lines ... ok dipy.align.tests.test_streamlinear.test_rigid_real_bundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_rigid_partial_real_bundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_stream_rigid ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_min_vs_min_fast_precision ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_same_number_of_points ... ok dipy.align.tests.test_streamlinear.test_efficient_bmd ... ok dipy.align.tests.test_streamlinear.test_openmp_locks ... ok dipy.align.tests.test_streamlinear.test_from_to_rigid ... ok dipy.align.tests.test_streamlinear.test_matrix44 ... ok dipy.align.tests.test_streamlinear.test_abstract_metric_class ... ok dipy.align.tests.test_streamlinear.test_evolution_of_previous_iterations ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_similarity_real_bundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) ok dipy.align.tests.test_streamlinear.test_affine_real_bundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_streamlinear.py:49: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(fname) (2, ) (3, ) (2, ) (3, ) [ 88.12211 109.13089 81.60664] 7.98038710649 23 196 [[ 9.99575812e-01 -2.24407546e-02 -1.85636526e-02 -9.17360628e-01] [ 2.91180530e-02 7.82729949e-01 6.21679955e-01 4.98753641e-01] [ 5.79359502e-04 -6.21956783e-01 7.83051355e-01 -1.17085203e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] fun: 7.98038697137847 hess_inv: <6x6 LbfgsInvHessProduct with dtype=float64> jac: array([ 2.66453526e-07, 2.06945572e-04, 7.10542736e-07, 7.10542736e-07, 1.37667655e-05, -2.30926389e-06]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 217 nit: 28 status: 0 success: True x: array([ -0.9173415 , 0.49886107, -1.17085703, 2.01199377, -40.01576157, 0.37543502]) 0.0001 0.0001 fun: 1.9878284749111824e-07 hess_inv: <12x12 LbfgsInvHessProduct with dtype=float64> jac: array([ 1.02610161e-04, -1.92093769e-04, 4.05737746e-04, 5.80658271e-05, 3.21992480e-05, 1.19177234e-05, -1.56281365e-03, -2.33418977e-03, -1.18476695e-03, 7.31173649e-04, -7.67331080e-04, 1.19614029e-03]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 2938 nit: 213 status: 0 success: True x: array([ 3.16690511e-05, -1.20278559e-04, 2.03706583e-04, 2.43949596e+00, -1.21322015e+01, -1.14476433e+01, 8.13658455e-01, 9.05543573e-01, 1.02811168e+00, -3.93841715e-02, -8.65363338e-02, -1.70660785e-02]) direc: array([[ -1.22488854e-07, -2.56677724e-07, -4.68045924e-07, -9.86521508e-06, 2.48249177e-05, -1.13402520e-05, 7.20317810e-08, -4.02643026e-08, -1.25654853e-07, -1.70900885e-07, -4.17495569e-07, -2.25568194e-07], [ -7.82398318e-12, 1.66585292e-10, -2.48462131e-10, 1.43913716e-09, -6.60922135e-09, -2.45167127e-09, 2.43356601e-11, -2.36260696e-11, 1.28352899e-11, -2.80051729e-11, 1.21774532e-10, 3.49932989e-11], [ -7.12854782e-10, -2.32724064e-09, -1.03151347e-10, 2.34599515e-08, -2.80392761e-08, -3.73301955e-08, -9.27350053e-11, -2.10456501e-10, 4.58988037e-10, -7.74473805e-10, 3.68426416e-10, 7.37886533e-10], [ 1.57801119e-06, -4.60436720e-07, -3.74775266e-08, 8.09381542e-07, 1.08863068e-06, -1.77612877e-06, -2.93542607e-07, -1.87884964e-08, 1.19867273e-08, -2.86894387e-07, -1.56356514e-07, -1.17190270e-07], [ -2.03709221e-07, 1.71689682e-07, -1.15830247e-07, -3.86474508e-06, 7.12370146e-07, 7.33007321e-06, -2.42516818e-07, 7.10298074e-08, -4.47531933e-08, -4.07123119e-08, -1.22191087e-07, -9.77889128e-09], [ 1.15478323e-05, -1.20426589e-05, -3.35259707e-06, -4.66788565e-05, 2.42372006e-04, 5.78139080e-04, 3.27074352e-06, 5.24628742e-06, -9.35957494e-07, 1.15398097e-05, -3.07280799e-06, 4.73484309e-06], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 7.66598309e-06, -4.29455607e-05, 3.40434287e-05, -6.19230174e-04, -3.12464529e-04, ok dipy.align.tests.test_streamlinear.test_vectorize_streamlines ... ok dipy.align.tests.test_streamlinear.test_x0_input ... ok dipy.align.tests.test_streamlinear.test_compose_decompose_matrix44 ... ok dipy.align.tests.test_streamlinear.test_cascade_of_optimizations_and_threading ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_3d ... ok dipy.align.tests.test_sumsqdiff.test_solve_2d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_solve_3d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_transforms.test_number_of_parameters ... ok dipy.align.tests.test_transforms.test_param_to_matrix_2d ... ok dipy.align.tests.test_transforms.test_param_to_matrix_3d ... ok dipy.align.tests.test_transforms.test_identity_parameters ... ok dipy.align.tests.test_transforms.test_jacobian_functions ... ok dipy.align.tests.test_transforms.test_invalid_transform ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_2d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_3d ... ok dipy.align.tests.test_vector_fields.test_circle ... ok dipy.align.tests.test_vector_fields.test_sphere ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_2d ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests 2D affine transform functions against scipy implementation ... ok Tests 3D affine transform functions against scipy implementation ... ok Creates two random displacement field that exactly map pixels from an input ... ok Creates two random displacement field that exactly map pixels from an input ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_3d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_2d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_random_vector_fields ... ok dipy.align.tests.test_vector_fields.test_gradient_2d ... ok dipy.align.tests.test_vector_fields.test_gradient_3d ... ok dipy.align.tests.test_whole_brain_slr.test_whole_brain_slr ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests/test_whole_brain_slr.py:14: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = nib.trackvis.read(get_data('fornix')) ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(1.0), array(0.9999999999999999), array(1.0)), (1.0, 1.0, 1.0)) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0038247415134641596, 0.0038247415134641614) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_geometry.test_vec2vec_rotmat ... ok dipy.core.tests.test_geometry.test_compose_transformations ... ok dipy.core.tests.test_geometry.test_compose_decompose_matrix ... ok dipy.core.tests.test_geometry.test_perpendicular_directions ... ok dipy.core.tests.test_geometry.test_dist_to_corner ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_gradients.test_deltas ... ok dipy.core.tests.test_gradients.test_qvalues ... ok dipy.core.tests.test_gradients.test_reorient_bvecs ... ok Test that the presence of nan's in b-vectors doesn't raise warnings. ... ok Tests whether we have properly generated bvecs. ... ok dipy.core.tests.test_gradients.test_check_multi_b ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_optimize.test_optimize_new_scipy ... ok dipy.core.tests.test_optimize.test_optimize_old_scipy ... SKIP: Skipping test: test_optimize_old_scipy: Test skipped due to test condition dipy.core.tests.test_optimize.test_sklearn_linear_solver ... ok dipy.core.tests.test_optimize.test_nonnegativeleastsquares ... ok dipy.core.tests.test_optimize.test_spdot ... ok dipy.core.tests.test_optimize.test_sparse_nnls ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_sphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ERROR dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.denoise.tests.test_ascm.test_ascm_static ... ok dipy.denoise.tests.test_ascm.test_ascm_random_noise ... ok dipy.denoise.tests.test_ascm.test_ascm_rmse_with_nlmeans ... ok dipy.denoise.tests.test_ascm.test_sharpness ... ok dipy.denoise.tests.test_ascm.test_ascm_accuracy ... ok dipy.denoise.tests.test_denoise.test_denoise ... ok Test if the kernel values are correct by comparison against the values ... ok Test if a convolution with a delta spike is equal to the kernel ... ok Test the normalization routine applied after a convolution ... ok Test the kernel for inputs of type Sphere, type int and for input None ... ok dipy.denoise.tests.test_lpca.test_lpca_static ... ok dipy.denoise.tests.test_lpca.test_lpca_random_noise ... ok dipy.denoise.tests.test_lpca.test_lpca_boundary_behaviour ... ok dipy.denoise.tests.test_lpca.test_lpca_rmse ... ok dipy.denoise.tests.test_lpca.test_lpca_sharpness ... ok dipy.denoise.tests.test_lpca.test_lpca_dtype ... ok dipy.denoise.tests.test_lpca.test_lpca_wrong ... ok dipy.denoise.tests.test_lpca.test_phantom ... ok dipy.denoise.tests.test_lpca.test_lpca_ill_conditioned ... ok dipy.denoise.tests.test_lpca.test_lpca_sigma_wrong_shape ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_padding ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_static ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_wrong ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_boundary ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_dtype ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4d_3dsigma_and_threads ... ok dipy.denoise.tests.test_noise_estimate.test_inv_nchi ... ok dipy.denoise.tests.test_noise_estimate.test_piesno ... ok dipy.denoise.tests.test_noise_estimate.test_piesno_type ... ok dipy.denoise.tests.test_noise_estimate.test_estimate_sigma ... ok dipy.denoise.tests.test_noise_estimate.test_pca_noise_estimate ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_static ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_non_local_means.test_scalar_sigma ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_boundary ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_wrong ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_dtype ... ok This test the number of inital direction." ... ok This tests the direction found by the bootstrap direction getter. ... ok This tests the bootstrapping residual. ... ok dipy.direction.tests.test_peaks.test_peak_directions_nl ... ok dipy.direction.tests.test_peaks.test_OdfFit ... ok dipy.direction.tests.test_peaks.test_peak_directions ... ok dipy.direction.tests.test_peaks.test_peak_directions_thorough ... ok dipy.direction.tests.test_peaks.test_difference_with_minmax ... ok dipy.direction.tests.test_peaks.test_degenerative_cases ... ok dipy.direction.tests.test_peaks.test_peaksFromModel ... ok dipy.direction.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.direction.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.direction.tests.test_pmf.test_pmf_from_sh ... ok dipy.direction.tests.test_pmf.test_pmf_from_array ... ok This tests the local model used for the bootstrapping. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/shm.py:755: RuntimeWarning: invalid value encountered in sqrt leverages = sqrt(1 - H.diagonal()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:554: RuntimeWarning: invalid value encountered in less where_fodf_small = (fodf < threshold).nonzero()[0] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:560: RuntimeWarning: invalid value encountered in less where_fodf_small = (fodf < threshold).nonzero()[0] ok dipy.direction.tests.test_prob_direction_getter.test_ProbabilisticDirectionGetter ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... ok dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.io.tests.test_io_peaks.test_io_peaks ... 1.16007619e-04, 9.51639589e-06, -4.96145704e-07, -5.52897377e-06, 7.18593789e-06, 8.57448545e-06, -1.06493968e-05], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], [ 1.10139708e-10, 1.86620074e-10, 6.65241565e-11, -4.88650048e-10, 4.16921010e-10, -3.18067755e-09, 7.69557730e-12, -3.28411694e-11, -3.14693727e-12, -4.82832386e-11, -3.05052936e-12, -2.35683569e-12]]) fun: 5.8620836863925685e-14 message: 'Optimization terminated successfully.' nfev: 5559 nit: 29 status: 0 success: True x: array([ 1.24943030e-07, -2.82526799e-07, 1.51866874e-07, -2.15822005e-03, 4.00750487e-05, 1.73317506e-03, 1.00005556e+00, 1.00002545e+00, 9.99997936e-01, 5.85482544e-05, 2.34344164e-05, -3.53777537e-05]) first rigid then similarity then affine Static streamlines size 300 Moving streamlines size 300 Static streamlines after length reduction 300 Moving streamlines after length reduction 300 QB static centroids size 9 QB moving centroids size 9 SLR finished in 0.008 seconds. SLR iterations: 1 Progressive Registration is Enabled Translation (3 parameters)... Rigid (6 parameters) ... Similarity (7 parameters) ... Scaling (9 parameters) ... Affine (12 parameters) ... Progressive Registration is Enabled Translation (3 parameters)... Rigid (6 parameters) ... Similarity (7 parameters) ... Scaling (9 parameters) ... Affine (12 parameters) ... Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} fun: 1.1908915926500003e-16 hess_inv: <3x3 LbfgsInvHessProduct with dtype=float64> jac: array([ -2.60101368e-09, -2.60101368e-09, -2.60101368e-09]) message: 'CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL' nfev: 12 nit: 2 status: 0 success: True x: array([ -6.30050684e-09, -6.30050684e-09, -6.30050684e-09]) (99.997547741816376, 92.109908765758362, 107.44577018904506) (100.00758641315477, 96.332632984904237, 103.87325977948872) ('Original RMSE', 0.16975863924343038) ('Smaller patch RMSE', 0.05197724542698226) ('Larger patch RMSE', 0.040705631063358054) ('ASCM RMSE', 0.046391124292215181) ('Edge gradient smaller patch', 0.25989152077496414) ('Edge gradient larger patch', 11.765311422858062) ('Edge gradient ASCM', 1.2552007034397263) The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 (99.984303278755746, 92.883035644698822, 108.34789862294276) (100.00658614958765, 99.482778165571176, 100.8252146279106) 299.542120265 101.263728704 cpu count 4 1 21.9434678555 All 5.68686389923 2 11.3353509903 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) 3 FILENAME: test_bv_file2.npy PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0ok dipy.io.tests.test_io_peaks.test_io_save_peaks_error ... ok dipy.io.tests.test_streamline.test_io_streamline ... ok dipy.io.tests.test_streamline.test_trackvis ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:22: DeprecationWarning: The `dipy.io.trackvis.save_trk` function is deprecated as of version 0.14 of Dipy and will be removed in a future version. Please use `dipy.io.streamline.save_trk` function instead DeprecationWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:39: DeprecationWarning: empty_header is deprecated; please use nibabel.streamlines.TrkFile.create_empty_header, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 hdr = nib.trackvis.empty_header() /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/trackvis.py:44: DeprecationWarning: trackvis.write is deprecated; please use nibabel.streamlines.save, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 nib.trackvis.write(filename, data, hdr) /usr/lib/python2.7/dist-packages/nibabel/streamlines/trk.py:598: HeaderWarning: Field 'vox_to_ras' in the TRK's header was not recorded. Will continue assuming it's the identity. " the identity."), HeaderWarning) ok dipy.reconst.tests.test_cache.test_basic_cache ... ok Test the calculation of the coefficient of determination ... ok Test k-fold cross-validation ... ok dipy.reconst.tests.test_cross_validation.test_csd_xval ... ok Test that if you try to do this with a model that doesn't have a `predict` ... ok Test the recursive response calibration method. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py:188: UserWarning: Vertices are not on the unit sphere. warnings.warn("Vertices are not on the unit sphere.") ok dipy.reconst.tests.test_csdeconv.test_auto_response ... ok dipy.reconst.tests.test_csdeconv.test_response_from_mask ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:878: UserWarning: No voxel with a FA higher than 1 were found. Try a larger roi or a lower threshold. warnings.warn(msg, UserWarning) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:85: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:78: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:324: RuntimeWarning: invalid value encountered in true_divide odf_sh /= Z ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok Test prediction API ... ok Check that we can predict reasonably from multi-voxel fits: ... ok Check that mirroring regularization sphere does not change the result of ... ok We check that the default value of lambda is the expected value with ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok Check the quality of csdfit with high SH order. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok dipy.reconst.tests.test_dki.test_positive_evals ... ok dipy.reconst.tests.test_dki.test_split_dki_param ... ok DKI fits are tested on noise free crossing fiber simulates ... ok Apparent kurtosis coeficients are tested for a spherical kurtosis ... ok dipy.reconst.tests.test_dki.test_dki_predict ... ok dipy.reconst.tests.test_dki.test_carlson_rf ... ok dipy.reconst.tests.test_dki.test_carlson_rd ... ok dipy.reconst.tests.test_dki.test_Wrotate_single_fiber ... ok dipy.reconst.tests.test_dki.test_Wrotate_crossing_fibers ... ok dipy.reconst.tests.test_dki.test_Wcons ... ok dipy.reconst.tests.test_dki.test_spherical_dki_statistics ... ok dipy.reconst.tests.test_dki.test_compare_MK_method ... ok dipy.reconst.tests.test_dki.test_single_voxel_DKI_stats ... ok dipy.reconst.tests.test_dki.test_compare_RK_methods ... ok dipy.reconst.tests.test_dki.test_MK_singularities ... ok dipy.reconst.tests.test_dki.test_dki_errors ... ok dipy.reconst.tests.test_dki.test_kurtosis_maximum ... ok dipy.reconst.tests.test_dki.test_multi_voxel_kurtosis_maximum ... ok dipy.reconst.tests.test_dki_micro.test_single_fiber_model ... ok dipy.reconst.tests.test_dki_micro.test_wmti_model_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_single_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_awf_only ... ok dipy.reconst.tests.test_dki_micro.additional_tortuosity_tests ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi.test_multib0_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok dipy.reconst.tests.test_dti.test_roll_evals ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_odf_with_zeros ... ok dipy.reconst.tests.test_dti.test_tensor_model ... ok dipy.reconst.tests.test_dti.test_indexing_on_tensor_fit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_ga_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_all_zeros ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion ... ok Test model prediction API ... ok dipy.reconst.tests.test_dti.test_eig_from_lo_tri ... ok dipy.reconst.tests.test_dti.test_min_signal_alone ... ok dipy.reconst.tests.test_dti.test_decompose_tensor_nan ... ok dipy.reconst.tests.test_forecast.test_forecast_positive_constrain ... SKIP: Skipping test: test_forecast_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_forecast.test_forecast_csd ... ok dipy.reconst.tests.test_forecast.test_forecast_odf ... ok dipy.reconst.tests.test_forecast.test_forecast_indices ... ok dipy.reconst.tests.test_forecast.test_forecast_predict ... ok dipy.reconst.tests.test_forecast.test_multivox_forecast ... ok dipy.reconst.tests.test_fwdti.test_fwdti_singlevoxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_precision ... ok dipy.reconst.tests.test_fwdti.test_fwdti_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_predictions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_errors ... ok dipy.reconst.tests.test_fwdti.test_fwdti_restore ... ok dipy.reconst.tests.test_fwdti.test_cholesky_functions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_jac_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_standalone_functions ... ok dipy.reconst.tests.test_fwdti.test_md_regularization ... ok dipy.reconst.tests.test_fwdti.test_negative_s0 ... ok dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok Test the implementation of the fitting for a single voxel. ... ok Test fitting with multivoxel data. ... ok Test if errors raised in the module are working correctly. ... ok Test whether setting incorrect mask raises and error ... ok Test whether fitting works for S0 > 1. ... ok Test to check if setting bounds for signal where initial value is ... ok Test the model prediction API. ... ok Test the method of IvimFit class ... ok Test if `shape` in `IvimFit` class gives the correct output. ... ok dipy.reconst.tests.test_ivim.test_multiple_b0 ... ok dipy.reconst.tests.test_ivim.test_no_b0 ... ok Test fitting for noisy signals. This tests whether the threshold condition ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test if the `IvimFit` class returns the correct S0 ... ok Test if the `IvimFit` class returns the correct f ... ok Test if the `IvimFit` class returns the correct D_star ... ok Test if the `IvimFit` class returns the correct D ... ok Test the linear estimates considering a single exponential fit. ... ok Test if the `estimate_f_D_star` returns the correct parameters after a ... ok Test to check the results for the one_stage linear fit. ... ok Test for cases where leastsq fitting fails and the results from a linear ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test error handling of the `_leastsq` method works when unfeasible x0 is ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) ok dipy.reconst.tests.test_mapmri.test_orthogonality_basis_functions ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_mapmri.py:89: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. 4, 0, diffusivity, q) * q ** 2, qmin, qmax)[0] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests/test_mapmri.py:94: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. 5, 0, diffusivity, q) * q ** 2, qmin, qmax)[0] ok dipy.reconst.tests.test_mapmri.test_mapmri_number_of_coefficients ... ok Test initialization conditions ... ok Test initialization conditions ... ok Test initialization conditions ... ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting ... ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_static_scale_factor ... ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting_over_radial_order ... ok dipy.reconst.tests.test_mapmri.test_mapmri_pdf_integral_unity ... ok dipy.reconst.tests.test_mapmri.test_mapmri_compare_fitted_pdf_with_multi_tensor ... ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_anisotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:788: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:816: UserWarning: Model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:856: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_isotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_anisotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_isotropic ... ok dipy.reconst.tests.test_mapmri.test_signal_fitting_equality_anisotropic_isotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_design_matrix_separability ... ok dipy.reconst.tests.test_mapmri.test_estimate_radius_with_rtap ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/voxel.py:218: RuntimeWarning: invalid value encountered in true_divide (2 * np.pi * q * radius) ** 2 ok dipy.reconst.tests.test_mapmri.test_positivity_constraint ... SKIP: Skipping test: test_positivity_constraint: Test skipped due to test condition dipy.reconst.tests.test_mapmri.test_laplacian_regularization ... ok dipy.reconst.tests.test_mapmri.test_mapmri_odf ... ok dipy.reconst.tests.test_multi_voxel.test_squash ... /usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py:781: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py:781: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py:781: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. val = comparison(x, y) ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_odf.test_gfa ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peakdf.test_PeaksAndMetricsDirectionGetter ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_sfm.test_design_matrix ... ok dipy.reconst.tests.test_sfm.test_sfm ... SKIP: Skipping test: test_sfm: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_predict ... SKIP: Skipping test: test_predict: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_sfm_background ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:414: RuntimeWarning: divide by zero encountered in divide flat_S0[..., None]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:61: RuntimeWarning: divide by zero encountered in divide to_fit[nzb0_idx] = data_no_b0[nzb0_idx] / s0[nzb0_idx[0]] ok dipy.reconst.tests.test_sfm.test_sfm_stick ... ok dipy.reconst.tests.test_sfm.test_sfm_sklearnlinearsolver ... ok dipy.reconst.tests.test_sfm.test_exponential_iso ... SKIP: Skipping test: test_exponential_iso: Test skipped due to test condition dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_order_from_ncoeff ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shm.test_faster_sph_harm ... ok dipy.reconst.tests.test_shm.test_anisotropic_power ... ok Based on the table in: ... ok dipy.reconst.tests.test_shore.test_shore_positive_constrain ... SKIP: Skipping test: test_shore_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_shore.test_shore_fitting_no_constrain_e0 ... ok dipy.reconst.tests.test_shore.test_shore_fitting_constrain_e0 ... SKIP: Skipping test: test_shore_fitting_constrain_e0: Test skipped due to test condition dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_adjustment.test_adjustment ... ok dipy.segment.tests.test_clustering.test_cluster_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_assign ... ok dipy.segment.tests.test_clustering.test_cluster_iter ... ok dipy.segment.tests.test_clustering.test_cluster_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_assign ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_clear ... ok dipy.segment.tests.test_clustering.test_cluster_map_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_map_size ... ok dipy.segment.tests.test_clustering.test_cluster_map_clusters_sizes ... ok dipy.segment.tests.test_clustering.test_cluster_map_get_small_and_large_clusters ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_object ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_subclassing_clustering ... ok dipy.segment.tests.test_feature.test_identity_feature ... ok dipy.segment.tests.test_feature.test_feature_resample ... ok dipy.segment.tests.test_feature.test_feature_center_of_mass ... ok dipy.segment.tests.test_feature.test_feature_midpoint ... ok dipy.segment.tests.test_feature.test_feature_arclength ... ok dipy.segment.tests.test_feature.test_feature_vector_of_endpoints ... ok dipy.segment.tests.test_feature.test_feature_extract ... ok dipy.segment.tests.test_feature.test_subclassing_feature ... ok dipy.segment.tests.test_feature.test_using_python_feature_with_cython_metric ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_metric.test_metric_minimum_average_direct_flip ... ok dipy.segment.tests.test_metric.test_metric_cosine ... ok dipy.segment.tests.test_metric.test_subclassing_metric ... ok dipy.segment.tests.test_metric.test_distance_matrix ... ok dipy.segment.tests.test_mrf.test_grayscale_image ... . 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine None Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape None ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) (256, 256, 5, 4) [[[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] ..., [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.2ok dipy.segment.tests.test_mrf.test_grayscale_iter ... ok dipy.segment.tests.test_mrf.test_square_iter ... ok dipy.segment.tests.test_mrf.test_icm_square ... ok dipy.segment.tests.test_mrf.test_classify ... 0929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]]] [ 0. 0.25 0.5 0.75] [ 0.11057956 0.12717534 0.1457706 0.16643355] [ 1. 1. 1. 1.] [ 0.07474418 0.08540787 0.20396497 0.42737855] -1821696.02605 -2290789.40113 -2293558.81479 -2295567.12041 -2296986.07786 -2297995.30267 -2298705.6089 -2299230.6191 -2299397.05051 -2299635.54397 -2299901.45469 -2300119.19781 -2300313.67246 -2300436.94961 -2300512.80908 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> ok dipy.segment.tests.test_qb.test_qbundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests/test_qb.py:8: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = nib.trackvis.read(get_data('fornix')) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/quickbundles.py:39: DeprecationWarning: Class 'dipy.segment.quickbundles.QuickBundles' is deprecated, instead use module 'dipy.segment.clustering.QuickBundles'. warn(DeprecationWarning(deprecation_msg)) ok dipy.segment.tests.test_qbx.test_3D_points ... ok dipy.segment.tests.test_qbx.test_3D_segments ... ok dipy.segment.tests.test_qbx.test_with_simulated_bundles ... ok dipy.segment.tests.test_qbx.test_with_simulated_bundles2 ... ok dipy.segment.tests.test_qbx.test_circle_parallel_fornix ... ok dipy.segment.tests.test_qbx.test_raise_mdf ... ok dipy.segment.tests.test_qbx.test_qbx_and_merge ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_empty_data ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_wrong_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_shape_uncompatibility ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_2D ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_streamlines ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_python_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_not_order_invariant_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_memory_leaks ... ok dipy.segment.tests.test_rb.test_rb_check_defaults ... ok dipy.segment.tests.test_rb.test_rb_disable_slr ... Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 41 >> Iteration: 42 >> Iteration: 43 >> Iteration: 44 >> Iteration: 45 >> Iteration: 46 >> Iteration: 47 >> Iteration: 48 >> Iteration: 49 >> Iteration: 50 >> Iteration: 51 >> Iteration: 52 >> Iteration: 53 >> Iteration: 54 >> Iteration: 55 >> Iteration: 56 >> Iteration: 57 >> Iteration: 58 >> Iteration: 59 >> Iteration: 60 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 Resampled to 20 points Size is 0.184 MB Duration of resampling is 0.001 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 401 random streamlines Duration 0.007 sec. # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 Resampled to 20 points Size is 0.096 MB Duration of resampling is 0.001 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 420 random streamlines Duration 0.010 sec. Streamlines have 8 centroids Total duration 0.011 sec. ## Recognize given bundle ## # Cluster model bundle using QBX Model bundle has 20 streamlines Distance threshold 5.000 Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. Model bundle has 4 centroids Duration 0.004 sec. # Reduce search space Reduction threshold 10.000 Reduction distance mdf Using MDF Number of neighbor streamlines 20 Duration 0.001 sec. # Local SLR of neighb_streamlines to model Square-root of BMD is 0.000 Number of iterations 1 Matrix size (4, 4) [[ 1. 0. -0. 0.] [-0. 1. 0. 0.] [ 0. -0. 1. 0.] [ 0. 0. 0. 1.]] [ 0. -0. 0. -0. -0. -0. 1.] Duration 0.023 sec. # Prune streamlines using the MDF distance Pruning threshold 10.000 Pruning distance mdf Resampled to 20 points Size is 0.009 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. QB Duration 0.004 sec. Using MDF Pruning matrix size is (4, 4) Number of centroids: 4 Number of streamlines after pruning: 20 Duration 0.005 sec. Total duration of recognition time is 0.032 sec. # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 Resampled to 20 points Size is 0.096 MB Duration of resampling is 0.001 sec. QBX phase starting... Meok dipy.segment.tests.test_rb.test_rb_no_verbose_and_mam ... ok dipy.segment.tests.test_rb.test_rb_clustermap ... ok dipy.segment.tests.test_rb.test_rb_no_neighb ... ok dipy.segment.tests.test_rb.test_rb_reduction_mam ... rging phase starting ... QuickBundlesX time for 420 random streamlines Duration 0.012 sec. Streamlines have 8 centroids Total duration 0.012 sec. ## Recognize given bundle ## # Cluster model bundle using QBX Model bundle has 20 streamlines Distance threshold 5.000 Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. Model bundle has 4 centroids Duration 0.004 sec. # Reduce search space Reduction threshold 10.000 Reduction distance mdf Using MDF Number of neighbor streamlines 20 Duration 0.000 sec. # Prune streamlines using the MDF distance Pruning threshold 10.000 Pruning distance mdf Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.002 sec. QB Duration 0.005 sec. Using MDF Pruning matrix size is (4, 4) Number of centroids: 4 Number of streamlines after pruning: 20 Duration 0.005 sec. Total duration of recognition time is 0.010 sec. Resampled to 20 points Size is 0.096 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 420 random streamlines Duration 0.011 sec. Streamlines have 6 centroids Total loading duration 0.000 sec. ## Recognize given bundle ## # Cluster model bundle using QBX Model bundle has 20 streamlines Distance threshold 5.000 Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. Model bundle has 4 centroids Duration 0.004 sec. # Reduce search space Reduction threshold 10.000 Reduction distance mdf Using MDF Number of neighbor streamlines 20 Duration 0.000 sec. # Local SLR of neighb_streamlines to model Square-root of BMD is 0.000 Number of iterations 1 Matrix size (4, 4) [[ 1. 0. -0. 0.] [-0. 1. 0. 0.] [ 0. -0. 1. 0.] [ 0. 0. 0. 1.]] [-0. -0. -0. -0. -0. -0. 1.] Duration 0.012 sec. # Prune streamlines using the MDF distance Pruning threshold 10.000 Pruning distance mdf Resampled to 20 points Size is 0.009 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. QB Duration 0.004 sec. Using MDF Pruning matrix size is (4, 5) Number of centroids: 5 Number of streamlines after pruning: 20 Duration 0.005 sec. Total duration of recognition time is 0.021 sec. # Cluster streamlines using QBx Tractogram has 320 streamlines Size is 0.178 MB Distance threshold 10.000 Resampled to 20 points Size is 0.073 MB Duration of resampling is 0.001 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 320 random streamlines Duration 0.009 sec. Streamlines have 5 centroids Total duration 0.010 sec. ## Recognize given bundle ## # Cluster model bundle using QBX Model bundle has 20 streamlines Distance threshold 5.000 Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. Model bundle has 4 centroids Duration 0.004 sec. # Reduce search space Reduction threshold 10.000 Reduction distance mdf Using MDF You have no neighbor streamlines... No bundle recognition # Cluster streamlines using QBx Tractogram has 420 streamlines Size is 0.233 MB Distance threshold 10.000 Resampled to 20 points Size is 0.096 MB Duration of resampling is 0.001 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 420 random streamlines Duration 0.010 sec. Streamlines have 8 centroids Total duration 0.010 sec. ## Recognize given bundle ## # Cluster model bundle using QBX Model bundle has 20 streamlines Distance threshold 5ok dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_check_directions ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.sims.tests.test_voxel.test_all_tensor_evecs ... ok Testing symmetry of the elements of the KT ... ok Testing DKI simulations when aligning the same fiber to different axis. ... ok Testing DKI simulations of a crossing fiber ... ok This tests that the trilinear interpolation returns the correct values. ... ok This tests that the binary tissue classifier returns expected ... ok This tests that the thresholdy tissue classifier returns expected ... ok This tests that the act tissue classifier returns expected ... ok This tests that the cmc tissue classifier returns expected ... ok This tests that the Local Tracker behaves as expected for the ... ok This tests that the Probabalistic Direction Getter plays nice ... ok This tests that the ParticleFilteringTracking produces ... ok This tests that the Maximum Deterministic Direction Getter plays nice ... ok This tests that the Bootstrat Peak Direction Getter plays nice ... ok This tests that the Closest Peak Direction Getter plays nice ... ok This tests that the Peaks And Metrics Direction Getter plays nice ... ok This tests that the input affine is properly handled by ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_distances.py:72: DeprecationWarning: trackvis.read is deprecated; please use nibabel.streamlines.load, instead. * deprecated from version: 2.5.0 * Will raise as of version: 4.0.0 streams, hdr = tv.read(get_data('fornix')) ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok Test the FBC measures on a set of fibers ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_life.test_streamline_gradients ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) ok dipy.tracking.tests.test_life.test_streamline_tensors ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] ok dipy.tracking.tests.test_life.test_streamline_signal ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] ok dipy.tracking.tests.test_life.test_voxel2streamline ... ok dipy.tracking.tests.test_life.test_FiberModel_init ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) ok dipy.tracking.tests.test_life.test_FiberFit ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) ok dipy.tracking.tests.test_life.test_fit_data ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:79: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3])/2.0 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:84: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:89: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. out[slice1] = (f[slice2] - f[slice3]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/life.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. R = la.svd(np.matrix(grad), overwrite_a=True)[2] ok dipy.tracking.tests.test_localtrack.test_ThresholdTissueClassifier ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_metrics.test_winding ... ok dipy.tracking.tests.test_propagation.test_offset ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok This test checks that the tracking will exclude seeds in both directions. ... ok dipy.tracking.tests.test_propagation.test_eudx_both_directions_errors ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_length ... ok dipy.tracking.tests.test_streamline.test_length_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_unlist_relist_streamlines ... ok dipy.tracking.tests.test_streamline.test_deform_streamlines ... ok dipy.tracking.tests.test_streamline.test_center_and_transform ... ok dipy.tracking.tests.test_streamline.test_select_random_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_select_by_rois ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/streamline.py:432: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: warn(w_s) ok dipy.tracking.tests.test_streamline.test_orient_by_rois ... ok dipy.tracking.tests.test_streamline.test_values_from_volume ... ok dipy.tracking.tests.test_streamline.test_streamlines_generator ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_to_voxel_coordinates_precision ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_target_lb ... ok dipy.tracking.tests.test_utils.test_near_roi ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/utils.py:723: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: 0.866025403784 warn(w_s) ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:483: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(10, 10, 10)) ok dipy.tracking.tests.test_utils.test_random_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:505: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(4, 6, 3)) ok dipy.tracking.tests.test_utils.test_connectivity_matrix_shape ... ok Testing the function unique_coords ... ok dipy.tracking.tests.test_utils.test_reduce_rois ... ok dipy.tracking.tests.test_utils.test_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_get_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_path_length ... ok dipy.tracking.tests.test_utils.test_min_at ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.utils.tests.test_arrfuncs.test_pinv ... ok dipy.utils.tests.test_arrfuncs.test_eigh ... ok dipy.utils.tests.test_omp.test_set_omp_threads ... ok dipy.utils.tests.test_omp.test_default_threads ... ok dipy.utils.tests.test_tripwire.test_is_tripwire ... ok dipy.utils.tests.test_tripwire.test_tripwire ... ok dipy.viz.tests.test_actors.test_bundle_maps ... SKIP: Skipping test: test_bundle_maps: Test skipped due to test condition dipy.viz.tests.test_actors.test_contour_from_roi ... SKIP: Skipping test: test_contour_from_roi: Test skipped due to test condition dipy.viz.tests.test_actors.test_dots ... SKIP: Skipping test: test_dots: Test skipped due to test condition dipy.viz.tests.test_actors.test_labels ... SKIP: Skipping test: test_labels: Test skipped due to test condition dipy.viz.tests.test_actors.test_odf_slicer ... SKIP: Skipping test: test_odf_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_peak_slicer ... SKIP: Skipping test: test_peak_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_points ... SKIP: Skipping test: test_points: Test skipped due to test condition dipy.viz.tests.test_actors.test_slicer ... SKIP: Skipping test: test_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_streamtube_and_line_actors ... SKIP: Skipping test: test_streamtube_and_line_actors: Test skipped due to test condition dipy.viz.tests.test_actors.test_tensor_slicer ... SKIP: Skipping test: test_tensor_slicer: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_colormap ... ok dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ... ok SKIP: No vtk for these tests dipy.viz.tests.test_regtools.test_plot_2d_diffeomorphic_map ... ok SKIP: No vtk for these tests dipy.viz.tests.test_utils.test_trilinear_interp ... ok dipy.viz.tests.test_widgets.test_button_and_slider_widgets ... SKIP: Skipping test: test_button_and_slider_widgets: Test skipped due to test condition dipy.viz.tests.test_widgets.test_text_widget ... SKIP: Skipping test: test_text_widget: Test skipped due to test condition dipy.viz.tests.test_window.test_active_camera ... SKIP: Skipping test: test_active_camera: Test skipped due to test condition dipy.viz.tests.test_window.test_order_transparent ... SKIP: Skipping test: test_order_transparent: Test skipped due to test condition dipy.viz.tests.test_window.test_parallel_projection ... SKIP: Skipping test: test_parallel_projection: Test skipped due to test condition dipy.viz.tests.test_window.test_renderer ... SKIP: Skipping test: test_renderer: Test skipped due to test condition dipy.workflows.tests.test_align.test_reslice ... ok dipy.workflows.tests.test_docstring_parser.test_signature ... ok dipy.workflows.tests.test_docstring_parser.test_summary ... ok dipy.workflows.tests.test_docstring_parser.test_extended_summary ... ok dipy.workflows.tests.test_docstring_parser.test_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_other_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_returns ... ok dipy.workflows.tests.test_docstring_parser.test_notes ... ok dipy.workflows.tests.test_docstring_parser.test_references ... ok dipy.workflows.tests.test_docstring_parser.test_examples ... ok dipy.workflows.tests.test_docstring_parser.test_index ... ok dipy.workflows.tests.test_docstring_parser.test_str ... ok dipy.workflows.tests.test_docstring_parser.test_parameters_without_extended_description ... ok dipy.workflows.tests.test_docstring_parser.test_raises ... ok dipy.workflows.tests.test_docstring_parser.test_warns ... ok dipy.workflows.tests.test_docstring_parser.test_see_also ... ok dipy.workflows.tests.test_docstring_parser.test_empty_first_line ... ok dipy.workflows.tests.test_docstring_parser.test_duplicate_signature ... ok dipy.workflows.tests.test_iap.test_iap ... ok dipy.workflows.tests.test_iap.test_iap_epilog ... ok dipy.workflows.tests.test_iap.test_flow_runner ... ok dipy.workflows.tests.test_io.test_io_info ... ok dipy.workflows.tests.test_masking.test_mask ... ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csa ... ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csd ... ok dipy.workflows.tests.test_reconst_dki.test_reconst_dki ... ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_wls ... ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_nlls ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_laplacian ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_none ... ok dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_both ... SKIP: Skipping test: test_reconst_mmri_both: Test skipped due to test condition dipy.workflows.tests.test_reconst_mapmri.test_reconst_mmri_positivity ... SKIP: Skipping test: test_reconst_mmri_positivity: Test skipped due to test condition dipy.workflows.tests.test_segment.test_median_otsu_flow ... ok dipy.workflows.tests.test_tracking.test_det_track ... ok dipy.workflows.tests.test_workflow.test_force_overwrite ... ok dipy.workflows.tests.test_workflow.test_get_sub_runs ... ok dipy.workflows.tests.test_workflow.test_run ... ok Set numpy print options to "legacy" for new versions of numpy ... ok dipy.testing.tests.test_decorators.test_skipper ... ok dipy.testing.tests.test_memory.test_get_type_refcount ... ok ====================================================================== ERROR: dipy.core.tests.test_sphere.test_interp_rbf ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests/test_sphere.py", line 375, in test_interp_rbf interp_data_a = interp_rbf(data, s0, s1, norm="angle") File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py", line 572, in interp_rbf **kwargs) File "/usr/lib/python2.7/dist-packages/scipy/interpolate/rbf.py", line 241, in __init__ self.nodes = linalg.solve(self.A, self.di) File "/usr/lib/python2.7/dist-packages/scipy/interpolate/rbf.py", line 247, in A r = squareform(pdist(self.xi.T, self.norm)) # Pairwise norm File "/usr/lib/python2.7/dist-packages/scipy/spatial/distance.py", line 2030, in pdist dm[k] = metric(X[i], X[j], **kwargs) File "/<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py", line 544, in angle xx[np.isnan(xx)] = 0 TypeError: 'numpy.float64' object does not support item assignment ---------------------------------------------------------------------- Ran 688 tests in 565.964s FAILED (SKIP=30, errors=1) .000 Resampled to 20 points Size is 0.005 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. Model bundle has 4 centroids Duration 0.005 sec. # Reduce search space Reduction threshold 10.000 Reduction distance mam Using MAM Number of neighbor streamlines 20 Duration 0.001 sec. # Local SLR of neighb_streamlines to model Square-root of BMD is 0.000 Number of iterations 7 Matrix size (4, 4) [[ 1. -0. 0. 0.] [ 0. 1. -0. 0.] [-0. 0. 1. 0.] [ 0. 0. 0. 1.]] [ 0. 0. -0. 0. 0. 0. 1.] Duration 0.054 sec. # Prune streamlines using the MDF distance Pruning threshold 10.000 Pruning distance mam Resampled to 20 points Size is 0.009 MB Duration of resampling is 0.003 sec. QBX phase starting... Merging phase starting ... QuickBundlesX time for 500000 random streamlines Duration 0.001 sec. QB Duration 0.004 sec. Using MAM Pruning matrix size is (4, 4) Number of centroids: 4 Number of streamlines after pruning: 20 Duration 0.004 sec. Total duration of recognition time is 0.064 sec. 0.000233173370361 14 0.00355100631714 14 0.220431089401 180 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195713]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 Running in parallel! [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Optimizing level 3 Optimizing level 2 Optimizing level 1 Optimizing level 0 make[1]: *** [debian/rules:88: override_dh_auto_install] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:30: binary] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190914-2256 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 638636 Build-Time: 866 Distribution: eoan Fail-Stage: build Host Architecture: amd64 Install-Time: 31 Job: dipy_0.14.0-1.dsc Machine Architecture: amd64 Package: dipy Package-Time: 905 Source-Version: 0.14.0-1 Space: 638636 Status: attempted Version: 0.14.0-1 -------------------------------------------------------------------------------- Finished at 20190914-2256 Build needed 00:15:05, 638636k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17643591 Scanning for processes to kill in build PACKAGEBUILD-17643591