https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal-gcc10/+build/18416240 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-001 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:08 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 18:53:53 ntpdate[1876]: adjust time server 10.211.37.1 offset 0.002239 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 --image-type chroot /home/buildd/filecache-default/dc614fa4772464ee6d43f8f857199c7f024663c7 Creating target for build PACKAGEBUILD-18416240 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 Starting target for build PACKAGEBUILD-18416240 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 'deb http://ppa.launchpad.net/doko/toolchain/ubuntu focal main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal main' 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18416240 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 Adding trusted keys to build-PACKAGEBUILD-18416240 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-01-18 [SC] 352B AA4B C10A 077D 04D2 8CAF 726C 32B5 38D0 4956 uid [ unknown] Launchpad PPA for Matthias Klose pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 Updating target for build PACKAGEBUILD-18416240 Get:1 http://ppa.launchpad.net/doko/toolchain/ubuntu focal InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal InRelease [15.4 kB] Get:4 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el Packages [109 kB] Get:5 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main Translation-en [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el Packages [934 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main ppc64el Packages [104 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main Translation-en [23.7 kB] Get:10 http://ftpmaster.internal/ubuntu focal/restricted ppc64el Packages [1288 B] Get:11 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:12 http://ftpmaster.internal/ubuntu focal/universe ppc64el Packages [8446 kB] Get:13 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:14 http://ftpmaster.internal/ubuntu focal/multiverse ppc64el Packages [127 kB] Get:15 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.9 MB in 3s (4736 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libctf-nobfd0 libctf0 libgcc-10-dev libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libstdc++-10-dev perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils bzip2 cpp cpp-9 debianutils fdisk g++ g++-9 gcc gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 97 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 211 MB of archives. After this operation, 690 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el gcc-10-base ppc64el 10-20200104-1ubuntu2 [18.9 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el libc6-dev ppc64el 2.30-0ubuntu3 [2556 kB] Get:3 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libgcc-s1 ppc64el 10-20200104-1ubuntu2 [30.4 kB] Get:4 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libgcc1 ppc64el 1:10-20200104-1ubuntu2 [30.3 kB] Get:5 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libstdc++6 ppc64el 10-20200104-1ubuntu2 [545 kB] Get:6 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libgomp1 ppc64el 10-20200104-1ubuntu2 [107 kB] Get:7 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libitm1 ppc64el 10-20200104-1ubuntu2 [28.5 kB] Get:8 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libatomic1 ppc64el 10-20200104-1ubuntu2 [9928 B] Get:9 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el liblsan0 ppc64el 10-20200104-1ubuntu2 [156 kB] Get:10 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libtsan0 ppc64el 10-20200104-1ubuntu2 [326 kB] Get:11 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libubsan1 ppc64el 10-20200104-1ubuntu2 [148 kB] Get:12 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libquadmath0 ppc64el 10-20200104-1ubuntu2 [153 kB] Get:13 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libcc1-0 ppc64el 10-20200104-1ubuntu2 [42.0 kB] Get:14 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.33.50.20200105-2ubuntu2 [1793 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el libc-dev-bin ppc64el 2.30-0ubuntu3 [72.8 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el linux-libc-dev ppc64el 5.3.0-24.26 [1091 kB] Get:17 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libbinutils ppc64el 2.33.50.20200105-2ubuntu2 [525 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el libc6 ppc64el 2.30-0ubuntu3 [2700 kB] Get:19 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el binutils ppc64el 2.33.50.20200105-2ubuntu2 [3388 B] Get:20 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el binutils-common ppc64el 2.33.50.20200105-2ubuntu2 [205 kB] Get:21 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libctf-nobfd0 ppc64el 2.33.50.20200105-2ubuntu2 [53.4 kB] Get:22 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libctf0 ppc64el 2.33.50.20200105-2ubuntu2 [53.5 kB] Get:23 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el cpp-10 ppc64el 10-20200104-1ubuntu2 [42.1 MB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el base-files ppc64el 11ubuntu2 [60.3 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el debianutils ppc64el 4.9.1 [86.6 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el bash ppc64el 5.0-5ubuntu1 [716 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdutils ppc64el 1:2.34-0.1ubuntu4 [67.9 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el gzip ppc64el 1.10-0ubuntu4 [104 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el hostname ppc64el 3.23 [11.8 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-bin ppc64el 6.1+20191019-1ubuntu1 [179 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el libperl5.30 ppc64el 5.30.0-9 [3914 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el perl ppc64el 5.30.0-9 [224 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-base ppc64el 5.30.0-9 [1494 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el bzip2 ppc64el 1.0.8-2 [36.9 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el libbz2-1.0 ppc64el 1.0.8-2 [43.3 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el libblkid1 ppc64el 2.34-0.1ubuntu4 [158 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el libuuid1 ppc64el 2.34-0.1ubuntu4 [21.8 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el libfdisk1 ppc64el 2.34-0.1ubuntu4 [193 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-8-0 ppc64el 10.34-7 [203 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el libselinux1 ppc64el 3.0-1 [81.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libmount1 ppc64el 2.34-0.1ubuntu4 [170 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses6 ppc64el 6.1+20191019-1ubuntu1 [120 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el libtinfo6 ppc64el 6.1+20191019-1ubuntu1 [101 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el libncursesw6 ppc64el 6.1+20191019-1ubuntu1 [152 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el libsmartcols1 ppc64el 2.34-0.1ubuntu4 [113 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el fdisk ppc64el 2.34-0.1ubuntu4 [128 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el util-linux ppc64el 2.34-0.1ubuntu4 [1066 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebconfclient0 ppc64el 0.250ubuntu2 [6260 B] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el base-passwd ppc64el 3.5.47 [50.2 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el libc-bin ppc64el 2.30-0ubuntu3 [626 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main ppc64el lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main ppc64el sysvinit-utils ppc64el 2.96-1ubuntu1 [23.0 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main ppc64el liblz4-1 ppc64el 1.9.2-2 [62.0 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd-sysv ppc64el 244-3ubuntu1 [9368 B] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el libacl1 ppc64el 2.2.53-5ubuntu1 [20.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el libapparmor1 ppc64el 2.13.3-7ubuntu1 [38.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap-ng0 ppc64el 0.7.9-2.1 [11.7 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit1 ppc64el 1:2.8.5-2ubuntu5 [42.7 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap2 ppc64el 1:2.27-1 [15.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el libudev1 ppc64el 244-3ubuntu1 [88.9 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.155-2ubuntu7 [153 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-6 [33.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main ppc64el libcryptsetup12 ppc64el 2:2.2.2-1ubuntu1 [213 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main ppc64el libnettle7 ppc64el 3.5.1+really3.5.1-2 [145 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main ppc64el libhogweed5 ppc64el 3.5.1+really3.5.1-2 [140 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main ppc64el libp11-kit0 ppc64el 0.23.18.1-2 [199 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main ppc64el libtasn1-6 ppc64el 4.15.0-2 [44.7 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main ppc64el libgnutls30 ppc64el 3.6.11.1-2 [774 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main ppc64el libkmod2 ppc64el 26-3ubuntu1 [50.1 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu4 [60.8 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main ppc64el libseccomp2 ppc64el 2.4.2-2ubuntu1 [50.0 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main ppc64el mount ppc64el 2.34-0.1ubuntu4 [122 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd ppc64el 244-3ubuntu1 [4405 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main ppc64el libsystemd0 ppc64el 244-3ubuntu1 [300 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main ppc64el libzstd1 ppc64el 1.4.4+dfsg-1 [298 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main ppc64el libapt-pkg5.90 ppc64el 1.9.5 [916 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcrypt20 ppc64el 1.8.5-3ubuntu1 [439 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main ppc64el gpgv ppc64el 2.2.17-3ubuntu1 [232 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main ppc64el apt ppc64el 1.9.5 [1310 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu4 [42.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu4 [282 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main ppc64el libattr1 ppc64el 1:2.4.48-5 [13.6 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main ppc64el libsepol1 ppc64el 3.0-1 [284 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage-common all 3.0-1 [9880 B] Get:89 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage1 ppc64el 3.0-1 [95.5 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main ppc64el libasan5 ppc64el 9.2.1-21ubuntu1 [408 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main ppc64el g++-9 ppc64el 9.2.1-21ubuntu1 [11.2 MB] Get:92 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9 ppc64el 9.2.1-21ubuntu1 [10.4 MB] Get:93 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++-9-dev ppc64el 9.2.1-21ubuntu1 [1746 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc-9-dev ppc64el 9.2.1-21ubuntu1 [1264 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main ppc64el libisl22 ppc64el 0.22-2 [691 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main ppc64el cpp-9 ppc64el 9.2.1-21ubuntu1 [9806 kB] Get:97 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libasan6 ppc64el 10-20200104-1ubuntu2 [353 kB] Get:98 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libgcc-10-dev ppc64el 10-20200104-1ubuntu2 [1262 kB] Get:99 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el gcc-10 ppc64el 10-20200104-1ubuntu2 [48.2 MB] Get:100 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9-base ppc64el 9.2.1-21ubuntu1 [19.1 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main ppc64el sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main ppc64el libsqlite3-0 ppc64el 3.30.1-1ubuntu1 [568 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main ppc64el gpg ppc64el 2.2.17-3ubuntu1 [532 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main ppc64el gpgconf ppc64el 2.2.17-3ubuntu1 [144 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main ppc64el gpg-agent ppc64el 2.2.17-3ubuntu1 [267 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile-bin ppc64el 1.16-1.1 [12.1 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile1 ppc64el 1.16-1.1 [7236 B] Get:108 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el libstdc++-10-dev ppc64el 10-20200104-1ubuntu2 [1710 kB] Get:109 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el g++-10 ppc64el 10-20200104-1ubuntu2 [45.4 MB] Get:110 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el g++ ppc64el 4:10-1ubuntu1 [1608 B] Get:111 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el gcc ppc64el 4:10-1ubuntu1 [5236 B] Get:112 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main ppc64el cpp ppc64el 4:10-1ubuntu1 [27.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 211 MB in 4s (47.7 MB/s) (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_ppc64el.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.3.0-24.26_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.3.0-24.26) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:ppc64el. Preparing to unpack .../gcc-10-base_10-20200104-1ubuntu2_ppc64el.deb ... Unpacking gcc-10-base:ppc64el (10-20200104-1ubuntu2) ... Setting up gcc-10-base:ppc64el (10-20200104-1ubuntu2) ... Selecting previously unselected package libgcc-s1:ppc64el. (Reading database ... 12690 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200104-1ubuntu2_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (10-20200104-1ubuntu2) ... Setting up libgcc-s1:ppc64el (10-20200104-1ubuntu2) ... 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Setting up libsqlite3-0:ppc64el (3.30.1-1ubuntu1) ... Setting up binutils-common:ppc64el (2.33.50.20200105-2ubuntu2) ... Setting up linux-libc-dev:ppc64el (5.3.0-24.26) ... Setting up libctf-nobfd0:ppc64el (2.33.50.20200105-2ubuntu2) ... Setting up libgomp1:ppc64el (10-20200104-1ubuntu2) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:ppc64el (1:2.27-1) ... Setting up libasan6:ppc64el (10-20200104-1ubuntu2) ... Setting up libncurses6:ppc64el (6.1+20191019-1ubuntu1) ... Setting up libquadmath0:ppc64el (10-20200104-1ubuntu2) ... Setting up libatomic1:ppc64el (10-20200104-1ubuntu2) ... Setting up libubsan1:ppc64el (10-20200104-1ubuntu2) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.155-2ubuntu7) ... Setting up mount (2.34-0.1ubuntu4) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:ppc64el (5.30.0-9) ... Setting up libisl22:ppc64el (0.22-2) ... Setting up liblockfile1:ppc64el (1.16-1.1) ... Setting up libjson-c4:ppc64el (0.13.1+dfsg-6) ... Setting up libbinutils:ppc64el (2.33.50.20200105-2ubuntu2) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up libcc1-0:ppc64el (10-20200104-1ubuntu2) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up liblsan0:ppc64el (10-20200104-1ubuntu2) ... Setting up cpp-10 (10-20200104-1ubuntu2) ... Setting up libitm1:ppc64el (10-20200104-1ubuntu2) ... Setting up libkmod2:ppc64el (26-3ubuntu1) ... Setting up gcc-9-base:ppc64el (9.2.1-21ubuntu1) ... Setting up libtsan0:ppc64el (10-20200104-1ubuntu2) ... Setting up libctf0:ppc64el (2.33.50.20200105-2ubuntu2) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libgcc-10-dev:ppc64el (10-20200104-1ubuntu2) ... Setting up libasan5:ppc64el (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp (4:10-1ubuntu1) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:ppc64el (2.30-0ubuntu3) ... Setting up libcryptsetup12:ppc64el (2:2.2.2-1ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.33.50.20200105-2ubuntu2) ... Setting up libstdc++-10-dev:ppc64el (10-20200104-1ubuntu2) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.33.50.20200105-2ubuntu2) ... Setting up libgcc-9-dev:ppc64el (9.2.1-21ubuntu1) ... Setting up gcc-10 (10-20200104-1ubuntu2) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Setting up g++-10 (10-20200104-1ubuntu2) ... Setting up libstdc++-9-dev:ppc64el (9.2.1-21ubuntu1) ... Setting up gcc (4:10-1ubuntu1) ... Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up g++ (4:10-1ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18416240 ppc64el focal -c chroot:build-PACKAGEBUILD-18416240 --arch=ppc64el --dist=focal --nolog mafft_7.453-1.dsc Initiating build PACKAGEBUILD-18416240 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:08 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-001.buildd +==============================================================================+ | mafft 7.453-1 (ppc64el) 05 Jan 2020 18:54 | +==============================================================================+ Package: mafft Version: 7.453-1 Source Version: 7.453-1 Distribution: focal Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/mafft-WRWTZv/mafft-7.453' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-WRWTZv' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18416240/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mafft_7.453-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-dWxdLe/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-dWxdLe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dWxdLe/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-dWxdLe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dWxdLe/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-dWxdLe/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (166 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-dWxdLe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15602 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12) Filtered Build-Depends: debhelper-compat (= 12) dpkg-deb: building package 'sbuild-build-depends-mafft-dummy' in '/<>/resolver-_Fyng4/apt_archive/sbuild-build-depends-mafft-dummy.deb'. Ign:1 copy:/<>/resolver-_Fyng4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_Fyng4/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_Fyng4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_Fyng4/apt_archive ./ Sources [213 B] Get:5 copy:/<>/resolver-_Fyng4/apt_archive ./ Packages [529 B] Fetched 2861 B in 0s (252 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mafft build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-mafft-dummy 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 73.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-_Fyng4/apt_archive ./ sbuild-build-depends-mafft-dummy 0.invalid.0 [860 B] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el groff-base ppc64el 1.22.4-4 [941 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el libpipeline1 ppc64el 1.5.1-3 [28.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el man-db ppc64el 2.9.0-2 [1145 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic-mgc ppc64el 1:5.37-6 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic1 ppc64el 1:5.37-6 [91.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el file ppc64el 1:5.37-6 [24.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libelf1 ppc64el 0.176-1.1 [51.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el libglib2.0-0 ppc64el 2.63.3-1 [1375 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el libicu63 ppc64el 63.2-2 [8505 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-8ubuntu1 [680 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext-base ppc64el 0.19.8.1-10 [52.7 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el autoconf all 2.69-11ubuntu1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main ppc64el autopoint all 0.19.8.1-10 [412 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libtool all 2.4.6-11 [194 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libarchive-zip-perl all 1.67-1 [90.4 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el dwz ppc64el 0.13-5 [136 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext ppc64el 0.19.8.1-10 [959 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el debhelper all 12.7.1ubuntu1 [875 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.6 MB in 0s (57.8 MB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 15602 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../02-libuchardet0_0.0.6-3_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_ppc64el.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../04-libpipeline1_1.5.1-3_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_ppc64el.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.37-6_ppc64el.deb ... Unpacking libmagic-mgc (1:5.37-6) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../07-libmagic1_1%3a5.37-6_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.37-6) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.37-6_ppc64el.deb ... Unpacking file (1:5.37-6) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../09-libelf1_0.176-1.1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.176-1.1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../10-libglib2.0-0_2.63.3-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.63.3-1) ... Selecting previously unselected package libicu63:ppc64el. Preparing to unpack .../11-libicu63_63.2-2_ppc64el.deb ... Unpacking libicu63:ppc64el (63.2-2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../12-libxml2_2.9.4+dfsg1-8ubuntu1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.4+dfsg1-8ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-10_ppc64el.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../14-libsigsegv2_2.12-2_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-4_ppc64el.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11ubuntu1_all.deb ... Unpacking autoconf (2.69-11ubuntu1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... 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Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.7.1ubuntu1_all.deb ... Unpacking debhelper (12.7.1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-mafft-dummy. Preparing to unpack .../33-sbuild-build-depends-mafft-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-mafft-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.1-3) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:ppc64el (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:ppc64el (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-8ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up sbuild-build-depends-mafft-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.33.50.20200105-2ubuntu2 dpkg-dev_1.19.7ubuntu2 g++-10_10-20200104-1ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-10_10-20200104-1ubuntu2 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-10-dev_10-20200104-1ubuntu2 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_10-20200104-1ubuntu2 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.50.20200105-2ubuntu2 binutils-common_2.33.50.20200105-2ubuntu2 binutils-powerpc64le-linux-gnu_2.33.50.20200105-2ubuntu2 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libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-10-dev_10-20200104-1ubuntu2 libgcc-9-dev_9.2.1-21ubuntu1 libgcc-s1_10-20200104-1ubuntu2 libgcc1_1:10-20200104-1ubuntu2 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_10-20200104-1ubuntu2 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_10-20200104-1ubuntu2 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200104-1ubuntu2 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libquadmath0_10-20200104-1ubuntu2 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-10-dev_10-20200104-1ubuntu2 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_10-20200104-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libtsan0_10-20200104-1ubuntu2 libubsan1_10-20200104-1ubuntu2 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mafft-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 21 16:28:39 2019 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mafft_7.453-1.dsc dpkg-source: info: extracting mafft in mafft-7.453 dpkg-source: info: unpacking mafft_7.453.orig.tar.gz dpkg-source: info: unpacking mafft_7.453-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18416240 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18416240 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18416240 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mafft dpkg-buildpackage: info: source version 7.453-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --sourcedirectory=core dh_auto_clean -O--sourcedirectory=core cd core && make -j4 clean make[1]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb mafft-sparsecore.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[1]: Leaving directory '/<>/core' dh_autoreconf_clean -O--sourcedirectory=core debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --sourcedirectory=core dh_update_autotools_config -a -O--sourcedirectory=core dh_autoreconf -a -O--sourcedirectory=core dh_auto_configure -a -O--sourcedirectory=core debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" cd core && make -j4 "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from io.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from mltaln9.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from tddis.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ io.c: In function ‘PreRead’: io.c:1097:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1097 | fgets( b, B-1, fp ); *locnjob = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c:1102:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1102 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1106:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1106 | fgets( b, B-1, fp ); nleni = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘FRead’: io.c:1142:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1142 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1232 | fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_part_pointer’: io.c:2667:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2667 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2668:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2668 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) | ^~~~~~~~~~~~~~~~~ io.c:2673:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2673 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_pointer’: io.c:2703:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2703 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2704:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2704 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) | ^~~~~~~~~~~~~~~~~ io.c:2709:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2709 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf’: io.c:2737:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2737 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2738:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2738 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2739:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2739 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_double’: io.c:2767:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2767 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2768:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2768 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2769:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2769 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_int’: io.c:2797:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2797 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2798:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2798 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2799:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2799 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_pointer’: io.c:2828:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2828 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2829:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2829 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2830:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2830 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2’: io.c:2858:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2858 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2859:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2859 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2860:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2860 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta_sub’: io.c:3060:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3060 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3075:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3075 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadSsearch’: io.c:3094:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3094 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_avscore’: io.c:3222:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3222 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3229:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3229 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3230:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3230 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_scoreonly’: io.c:3345:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3345 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3352:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3352 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3353:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3353 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7’: io.c:3463:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3463 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3470:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3470 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3471:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3471 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34noalign’: io.c:3495:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3495 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_nuc’: io.c:3532:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3532 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3558:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3558 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10’: io.c:3671:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3671 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3695:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3695 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nucbk’: io.c:3798:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3798 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nuc’: io.c:3848:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3848 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly’: io.c:3909:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3909 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34’: io.c:3965:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3965 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3991:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3991 | fgets( b, B-1, fp ); // initn: | ^~~~~~~~~~~~~~~~~~~ io.c:3994:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3994 | fgets( b, B-1, fp ); // Smith-Waterman score | ^~~~~~~~~~~~~~~~~~~ io.c:4006:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4006 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta3’: io.c:4028:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4028 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta’: io.c:4053:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4053 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt’: io.c:4090:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4090 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt2’: io.c:4111:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4111 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readOtherOptions’: io.c:4207:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4207 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘loadaamtx’: io.c:5465:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5465 | fgets( inorder, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5497:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5497 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5520:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5520 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readsubalignmentstable’: io.c:5676:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5676 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5697:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5697 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readmccaskill’: io.c:5751:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5751 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5761:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5761 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readpairfoldalign’: io.c:5820:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5820 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5833:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5833 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5840:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5840 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5854:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5854 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5860:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5860 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readexternalanchors’: io.c:6298:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6298 | fgets( buf, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘check_guidetreefile’: mltaln9.c:2802:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2802 | fgets( string, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘readlocalhomtable2_single_bin_noseek’: mltaln9.c:15112:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15112 | fread( &size, sizeof( int ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15113:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15113 | fread( &opt, sizeof( double ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15116:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15116 | fread( m, size*sizeof( int ), 3, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15152:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15152 | fread( &c, sizeof( char ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from constants.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from constants.c:7: blosum.c: In function ‘overridematrix’: blosum.c:369:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 369 | fgets( buf, 499, fp ); | ^~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from nj.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from partSalignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/stdio.h:867, from mltaln.h:13, from mltaln9.c:1: In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2802:2: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Lalignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from rna.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rna.c: In function ‘rnaalifoldcall’: rna.c:225:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | system( cmd ); | ^~~~~~~~~~~~~ rna.c:245:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ rna.c:285:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | system( cmd ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Salignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Dalignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Falign.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Falign_localhom.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Galign11.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from Lalign11.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from genalign11.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from MSalignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from fftFunctions.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from fft.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from tditeration.c:9: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from dvtditr.c:4: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dvtditr.c: In function ‘main’: dvtditr.c:1020:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1020 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from defs.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from SAalignmm.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from treeOperation.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from addfunctions.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from dndfast7.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dndfast7.c: In function ‘main’: dndfast7.c:326:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from dndblast.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from sextet5.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dndblast.c: In function ‘main’: dndblast.c:201:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system( com ); | ^~~~~~~~~~~~~ dndblast.c:382:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 382 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from mafft-distance.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from MSalign11.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from suboptalign11.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalignmain.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from pairlocalalignmain.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from pairlocalalign.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pairlocalalign.c: In function ‘calllast_once’: pairlocalalign.c:1055:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1055 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c:1091:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1091 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx’: pairlocalalign.c:607:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 607 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calllast_fast’: pairlocalalign.c:980:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 980 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘lastcallthread’: pairlocalalign.c:871:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 871 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx_singleq’: pairlocalalign.c:373:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readhat4’: pairlocalalign.c:1531:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1531 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1543:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1543 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘recalllara’: pairlocalalign.c:1244:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1244 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘callmxscarna_giving_bpp’: pairlocalalign.c:1407:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1409:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1409 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1429:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1450:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1450 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1464:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1464 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1484:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1484 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1486:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1486 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calldafs_giving_bpp’: pairlocalalign.c:1290:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1290 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1292:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1292 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1312:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1312 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1333:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1343:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1343 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1363:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1363 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1365:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1365 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1367:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1367 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘pairalign_node’: pairlocalalign.c:3438:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3438 | system( "rm -rf hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3439:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3439 | system( "mkdir hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3444:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3444 | system( fn ); | ^~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from multi2hat3s.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from pairash.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pairash.c: In function ‘prepareash’: pairash.c:639:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 639 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:681:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 681 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash’: pairash.c:485:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 485 | system( com ); | ^~~~~~~~~~~~~ pairash.c: In function ‘readrash’: pairash.c:277:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 277 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:284:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 284 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:289:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:294:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘preparetmalign’: pairash.c:530:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 530 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:576:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 576 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:587:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 587 | system( command ); | ^~~~~~~~~~~~~~~~~ pairash.c: In function ‘checkcbeta’: pairash.c:321:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 321 | fgets( linec, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign’: pairash.c:347:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | system( com ); | ^~~~~~~~~~~~~ pairash.c:356:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 356 | fgets( com, 100, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘readtmalign’: pairash.c:228:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:232:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:235:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:238:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash.constprop’: pairash.c:428:29: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 428 | sprintf( cachefile, "%s/%s.%s.rash", cachedir, fname1, fname2 ); | ^ In file included from /usr/include/stdio.h:867, from mltaln.h:13, from pairash.c:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 8 or more bytes (assuming 10007) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:484:22: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9996 [-Wformat-overflow=] 484 | sprintf( com, "cat %s > %s.rashout", cachefile, pairid ); | ^~ ~~~~~~~~~ In file included from /usr/include/stdio.h:867, from mltaln.h:13, from pairash.c:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 16 and 11014 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from addsingle.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pairash.c: In function ‘calltmalign.constprop’: pairash.c:346:27: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9991 [-Wformat-overflow=] 346 | sprintf( com, "mkdir -p %s", cachedir ); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from mltaln.h:13, from pairash.c:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 10009 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:349:31: warning: ‘-’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 349 | sprintf( cachefile, "%s/%s%s-%s%s", cachedir, fname1, chain1, fname2, chain2 ); | ^ In file included from /usr/include/stdio.h:867, from mltaln.h:13, from pairash.c:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 3 or more bytes (assuming 10002) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -o maffttext2hex maffttext2hex.c -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread maffttext2hex.c: In function ‘main’: maffttext2hex.c:55:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets( (char *)buf, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -o hex2maffttext hex2maffttext.c -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from splittbfast.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ splittbfast.c: In function ‘main’: splittbfast.c:3218:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3218 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from disttbfast.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ disttbfast.c: In function ‘disttbfast’: disttbfast.c:4133:6: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4133 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from tbfast.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tbfast.c: In function ‘main’: tbfast.c:3190:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3190 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nodepair.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from nodepair.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from mafft-profile.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from f2cl.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ f2cl.c: In function ‘main’: f2cl.c:287:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fgets( gett, B-1, orderfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from mccaskillwrap.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mccaskillwrap.c: In function ‘main’: mccaskillwrap.c:372:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mccaskillwrap.c: In function ‘athread’: mccaskillwrap.c:115:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:117:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:129:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ mccaskillwrap.c:155:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c: In function ‘readrawmccaskill’: mccaskillwrap.c:46:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from contrafoldwrap.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ contrafoldwrap.c: In function ‘readcontrafold’: contrafoldwrap.c:57:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from countlen.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from seq2regtable.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from regtable2seq.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from score.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ regtable2seq.c: In function ‘readereg’: regtable2seq.c:69:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c:97:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c: In function ‘readreg’: regtable2seq.c:120:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from getlag.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from dndpre.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from setcore.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from replaceu.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from restoreu.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ restoreu.c: In function ‘main’: restoreu.c:177:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 177 | fgets( gett, 999, dlfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from setdirection.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from makedirectionlist.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ setdirection.c: In function ‘main’: setdirection.c:132:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets( line, 99, difp ); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -o version version.c -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread In file included from /usr/include/powerpc64le-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from mltaln.h:13, from version.c:1: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-sparsecore.tmpl > mafft-sparsecore.rb gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairlocalalignmain.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o nodepair mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o nodepair.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Lalign11.o genalign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lpthread /usr/bin/ld: defs.o:(.bss+0x30): multiple definition of `nadd'; makedirectionlist.o:(.bss+0x4): first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:211: makedirectionlist] Error 1 make[2]: Leaving directory '/<>/core' dh_auto_build: cd core && make -j4 "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" returned exit code 2 make[1]: *** [debian/rules:14: override_dh_auto_build] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:11: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1855 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 72412 Build-Time: 17 Distribution: focal Fail-Stage: build Host Architecture: ppc64el Install-Time: 8 Job: mafft_7.453-1.dsc Machine Architecture: ppc64el Package: mafft Package-Time: 26 Source-Version: 7.453-1 Space: 72412 Status: attempted Version: 7.453-1 -------------------------------------------------------------------------------- Finished at 20200105-1855 Build needed 00:00:26, 72412k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18416240 Scanning for processes to kill in build PACKAGEBUILD-18416240