https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal-gcc10/+build/18429744 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-006 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:04 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Jan 10:12:48 ntpdate[1846]: adjust time server 10.211.37.1 offset 0.016479 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18429744 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 Starting target for build PACKAGEBUILD-18429744 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 'deb http://ppa.launchpad.net/doko/toolchain/ubuntu focal main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal main' 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18429744 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 Adding trusted keys to build-PACKAGEBUILD-18429744 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-01-18 [SC] 352B AA4B C10A 077D 04D2 8CAF 726C 32B5 38D0 4956 uid [ unknown] Launchpad PPA for Matthias Klose pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 Updating target for build PACKAGEBUILD-18429744 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ppa.launchpad.net/doko/toolchain/ubuntu focal InRelease [15.4 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal InRelease [15.4 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x Packages [915 kB] Get:5 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x Packages [77.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [504 kB] Get:7 http://ftpmaster.internal/ubuntu focal/restricted s390x Packages [1288 B] Get:8 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5964 B] Get:9 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main Translation-en [26.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8251 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main s390x Packages [74.0 kB] Get:12 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5147 kB] Get:13 http://ftpmaster.internal/ubuntu focal/multiverse s390x Packages [119 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main Translation-en [23.7 kB] Get:15 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.5 MB in 3s (5030 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libctf-nobfd0 libctf0 libgcc-10-dev libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libstdc++-10-dev perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp cpp-9 debianutils fdisk g++ g++-9 gcc gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 94 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 191 MB of archives. After this operation, 648 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.4.0-9.12 [1081 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu2 [60.0 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu4 [61.5 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:14 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x gcc-10-base s390x 10-20200107-1ubuntu1 [18.9 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu4 [128 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu4 [20.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu4 [160 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 3.0-1 [65.6 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu4 [137 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu4 [93.6 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu4 [113 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu4 [981 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu2 [6152 B] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 244-3ubuntu1 [9364 B] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5ubuntu1 [18.3 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu1 [33.0 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu5 [37.3 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 244-3ubuntu1 [71.8 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2 [684 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.2-2ubuntu2 [38.2 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu4 [110 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 244-3ubuntu1 [3325 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 244-3ubuntu1 [239 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.5 [789 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x apt s390x 1.9.5 [1242 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:70 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libgcc-s1 s390x 10-20200107-1ubuntu1 [27.1 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 3.0-1 [9880 B] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 3.0-1 [80.3 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:77 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libgcc1 s390x 1:10-20200107-1ubuntu1 [27.0 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22-2 [546 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1ubuntu1 [504 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] Get:89 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libstdc++6 s390x 10-20200107-1ubuntu1 [493 kB] Get:90 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libgomp1 s390x 10-20200107-1ubuntu1 [106 kB] Get:91 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libitm1 s390x 10-20200107-1ubuntu1 [26.8 kB] Get:92 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libatomic1 s390x 10-20200107-1ubuntu1 [8400 B] Get:93 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libubsan1 s390x 10-20200107-1ubuntu1 [138 kB] Get:94 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libcc1-0 s390x 10-20200107-1ubuntu1 [38.1 kB] Get:95 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.50.20200105-2ubuntu2 [1677 kB] Get:96 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libbinutils s390x 2.33.50.20200105-2ubuntu2 [331 kB] Get:97 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x binutils s390x 2.33.50.20200105-2ubuntu2 [3352 B] Get:98 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x binutils-common s390x 2.33.50.20200105-2ubuntu2 [205 kB] Get:99 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libctf-nobfd0 s390x 2.33.50.20200105-2ubuntu2 [49.4 kB] Get:100 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libctf0 s390x 2.33.50.20200105-2ubuntu2 [49.5 kB] Get:101 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x cpp-10 s390x 10-20200107-1ubuntu1 [40.3 MB] Get:102 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libasan6 s390x 10-20200107-1ubuntu1 [328 kB] Get:103 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libgcc-10-dev s390x 10-20200107-1ubuntu1 [741 kB] Get:104 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x gcc-10 s390x 10-20200107-1ubuntu1 [45.7 MB] Get:105 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libstdc++-10-dev s390x 10-20200107-1ubuntu1 [1647 kB] Get:106 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x g++-10 s390x 10-20200107-1ubuntu1 [43.9 MB] Get:107 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x g++ s390x 4:10-1ubuntu1 [1608 B] Get:108 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x gcc s390x 4:10-1ubuntu1 [5212 B] Get:109 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x cpp s390x 4:10-1ubuntu1 [27.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 191 MB in 13s (15.3 MB/s) (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_s390x.deb ... Unpacking libc6-dev:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_s390x.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-9.12_s390x.deb ... Unpacking linux-libc-dev:s390x (5.4.0-9.12) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:s390x. Preparing to unpack .../gcc-10-base_10-20200107-1ubuntu1_s390x.deb ... Unpacking gcc-10-base:s390x (10-20200107-1ubuntu1) ... Setting up gcc-10-base:s390x (10-20200107-1ubuntu1) ... Selecting previously unselected package libgcc-s1:s390x. (Reading database ... 12541 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200107-1ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (10-20200107-1ubuntu1) ... Setting up libgcc-s1:s390x (10-20200107-1ubuntu1) ... (Reading database ... 12544 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200107-1ubuntu1_s390x.deb ... Unpacking libgcc1 (1:10-20200107-1ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1 (1:10-20200107-1ubuntu1) ... (Reading database ... 12544 files and directories currently installed.) Preparing to unpack .../libc6_2.30-0ubuntu3_s390x.deb ... Unpacking libc6:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc6:s390x (2.30-0ubuntu3) ... (Reading database ... 12544 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu2_s390x.deb ... Unpacking base-files (11ubuntu2) over (10.2ubuntu7) ... Setting up base-files (11ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... 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Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libsqlite3-0:s390x (3.30.1-1ubuntu1) ... Setting up binutils-common:s390x (2.33.50.20200105-2ubuntu2) ... Setting up linux-libc-dev:s390x (5.4.0-9.12) ... Setting up libctf-nobfd0:s390x (2.33.50.20200105-2ubuntu2) ... Setting up libgomp1:s390x (10-20200107-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:s390x (1:2.27-1) ... Setting up libasan6:s390x (10-20200107-1ubuntu1) ... Setting up libncurses6:s390x (6.1+20191019-1ubuntu1) ... Setting up libatomic1:s390x (10-20200107-1ubuntu1) ... Setting up libubsan1:s390x (10-20200107-1ubuntu1) ... Setting up libdevmapper1.02.1:s390x (2:1.02.155-2ubuntu7) ... Setting up mount (2.34-0.1ubuntu4) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:s390x (5.30.0-9) ... Setting up libisl22:s390x (0.22-2) ... Setting up liblockfile1:s390x (1.16-1.1) ... Setting up libjson-c4:s390x (0.13.1+dfsg-6) ... Setting up libbinutils:s390x (2.33.50.20200105-2ubuntu2) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up libcc1-0:s390x (10-20200107-1ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up cpp-10 (10-20200107-1ubuntu1) ... Setting up libitm1:s390x (10-20200107-1ubuntu1) ... Setting up libkmod2:s390x (26-3ubuntu1) ... Setting up gcc-9-base:s390x (9.2.1-21ubuntu1) ... Setting up libctf0:s390x (2.33.50.20200105-2ubuntu2) ... Setting up binutils-s390x-linux-gnu (2.33.50.20200105-2ubuntu2) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libgcc-10-dev:s390x (10-20200107-1ubuntu1) ... Setting up binutils (2.33.50.20200105-2ubuntu2) ... Setting up libasan5:s390x (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up gcc-10 (10-20200107-1ubuntu1) ... Setting up cpp (4:10-1ubuntu1) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:s390x (2.30-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.2.2-1ubuntu1) ... Setting up libstdc++-10-dev:s390x (10-20200107-1ubuntu1) ... Setting up g++-10 (10-20200107-1ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up gcc (4:10-1ubuntu1) ... Setting up libgcc-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up g++ (4:10-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up g++-9 (9.2.1-21ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18429744 s390x focal -c chroot:build-PACKAGEBUILD-18429744 --arch=s390x --dist=focal --nolog proteinortho_6.0.8+dfsg-1build1.dsc Initiating build PACKAGEBUILD-18429744 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:04 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-006.buildd +==============================================================================+ | proteinortho 6.0.8+dfsg-1build1 (s390x) 14 Jan 2020 10:13 | +==============================================================================+ Package: proteinortho Version: 6.0.8+dfsg-1build1 Source Version: 6.0.8+dfsg-1build1 Distribution: focal Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/proteinortho-aYGvQJ/proteinortho-6.0.8+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-aYGvQJ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18429744/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- proteinortho_6.0.8+dfsg-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vS6g51/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-vS6g51/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vS6g51/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vS6g51/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vS6g51/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-vS6g51/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-vS6g51/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15420 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner Filtered Build-Depends: debhelper-compat (= 12), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner dpkg-deb: building package 'sbuild-build-depends-proteinortho-dummy' in '/<>/resolver-WX6xd3/apt_archive/sbuild-build-depends-proteinortho-dummy.deb'. Ign:1 copy:/<>/resolver-WX6xd3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WX6xd3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WX6xd3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WX6xd3/apt_archive ./ Sources [262 B] Get:5 copy:/<>/resolver-WX6xd3/apt_archive ./ Packages [582 B] Fetched 2963 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install proteinortho build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack-dev liblapack3 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-minimal python3.7 python3.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support Recommended packages: med-config curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack-dev liblapack3 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-minimal python3.7 python3.7-minimal sbuild-build-depends-proteinortho-dummy 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 41.0 MB of archives. After this operation, 200 MB of additional disk space will be used. 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libelf1 s390x 0.176-1.1 [41.4 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-0 s390x 2.63.3-1 [1176 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libicu63 s390x 63.2-2 [8044 kB] Get:24 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main s390x libgfortran5 s390x 10-20200107-1ubuntu1 [400 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libxml2 s390x 2.9.4+dfsg1-8ubuntu2 [664 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x gettext-base s390x 0.19.8.1-10 [49.1 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x m4 s390x 1.4.18-4 [196 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x autoconf all 2.69-11ubuntu1 [321 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x automake all 1:1.16.1-4ubuntu3 [522 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x autopoint all 0.19.8.1-10 [412 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libtool all 2.4.6-11 [194 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x dh-autoreconf all 19 [16.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libarchive-zip-perl all 1.67-1 [90.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x dwz s390x 0.13-5 [146 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x gettext s390x 0.19.8.1-10 [867 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.7.1ubuntu1 [875 kB] Get:46 http://ftpmaster.internal/ubuntu focal/universe s390x diamond-aligner s390x 0.9.29+dfsg-3 [450 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x libblas3 s390x 3.9.0-1 [124 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x libblas-dev s390x 3.9.0-1 [127 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x liblapack3 s390x 3.9.0-1 [1707 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x liblapack-dev s390x 3.9.0-1 [3338 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x liblmdb0 s390x 0.9.23-0ubuntu1 [43.9 kB] Get:52 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedcrypto3 s390x 2.16.3-1 [144 kB] Get:53 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedx509-0 s390x 2.16.3-1 [40.4 kB] Get:54 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedtls12 s390x 2.16.3-1 [63.3 kB] Get:55 http://ftpmaster.internal/ubuntu focal/universe s390x ncbi-data all 6.1.20170106+dfsg1-7 [3518 kB] Get:56 http://ftpmaster.internal/ubuntu focal/universe s390x ncbi-blast+ s390x 2.9.0-2 [9989 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.0 MB in 1s (81.0 MB/s) Selecting previously unselected package libpython3.7-minimal:s390x. (Reading database ... 15420 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.6-1_s390x.deb ... Unpacking libpython3.7-minimal:s390x (3.7.6-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.2.9-1_s390x.deb ... Unpacking libexpat1:s390x (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.6-1_s390x.deb ... Unpacking python3.7-minimal (3.7.6-1) ... Setting up libpython3.7-minimal:s390x (3.7.6-1) ... Setting up libexpat1:s390x (2.2.9-1) ... Setting up python3.7-minimal (3.7.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_s390x.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:s390x (1:5.37-6ubuntu1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6ubuntu1) ... Setting up diamond-aligner (0.9.29+dfsg-3) ... Setting up libicu63:s390x (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libgfortran5:s390x (10-20200107-1ubuntu1) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libmbedcrypto3:s390x (2.16.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:s390x (2.4.2-2) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu2) ... Setting up libblas-dev:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpython3.7-stdlib:s390x (3.7.6-1) ... Setting up liblapack3:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libtool (2.4.6-11) ... Setting up libmbedx509-0:s390x (2.16.3-1) ... Setting up libmbedtls12:s390x (2.16.3-1) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libpython3-stdlib:s390x (3.7.5-1ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.6-1) ... Setting up gettext (0.19.8.1-10) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ncbi-blast+ (2.9.0-2) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up sbuild-build-depends-proteinortho-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-171-generic s390x (s390x) Toolchain package versions: binutils_2.33.50.20200105-2ubuntu2 dpkg-dev_1.19.7ubuntu2 g++-10_10-20200107-1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc-10_10-20200107-1ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-10-dev_10-20200107-1ubuntu1 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_10-20200107-1ubuntu1 linux-libc-dev_5.4.0-9.12 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.50.20200105-2ubuntu2 binutils-common_2.33.50.20200105-2ubuntu2 binutils-s390x-linux-gnu_2.33.50.20200105-2ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:10-1ubuntu1 cpp-10_10-20200107-1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diamond-aligner_0.9.29+dfsg-3 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6ubuntu1 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:10-1ubuntu1 g++-10_10-20200107-1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:10-1ubuntu1 gcc-10_10-20200107-1ubuntu1 gcc-10-base_10-20200107-1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libasan6_10-20200107-1ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_10-20200107-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.50.20200105-2ubuntu2 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu4 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_10-20200107-1ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libctf-nobfd0_2.33.50.20200105-2ubuntu2 libctf0_2.33.50.20200105-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-10-dev_10-20200107-1ubuntu1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc-s1_10-20200107-1ubuntu1 libgcc1_1:10-20200107-1ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200107-1ubuntu1 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_10-20200107-1ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_10-20200107-1ubuntu1 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblapack-dev_3.9.0-1 liblapack3_3.9.0-1 liblmdb0_0.9.23-0ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6ubuntu1 libmagic1_1:5.37-6ubuntu1 libmbedcrypto3_2.16.3-1 libmbedtls12_2.16.3-1 libmbedx509-0_2.16.3-1 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython3-stdlib_3.7.5-1ubuntu1 libpython3.7-minimal_3.7.6-1 libpython3.7-stdlib_3.7.6-1 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-10-dev_10-20200107-1ubuntu1 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_10-20200107-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_10-20200107-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libxml2_2.9.4+dfsg1-8ubuntu2 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-9.12 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu4 ncbi-blast+_2.9.0-2 ncbi-data_6.1.20170106+dfsg1-7 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python3_3.7.5-1ubuntu1 python3-minimal_3.7.5-1ubuntu1 python3.7_3.7.6-1 python3.7-minimal_3.7.6-1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proteinortho-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Oct 14 12:44:16 2019 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proteinortho_6.0.8+dfsg-1build1.dsc dpkg-source: info: extracting proteinortho in proteinortho-6.0.8+dfsg dpkg-source: info: unpacking proteinortho_6.0.8+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.0.8+dfsg-1build1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18429744 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18429744 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18429744 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.0.8+dfsg-1build1 dpkg-buildpackage: info: source distribution eoan dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) [ 25%] Building **graphMinusRemovegraph** [ 50%] Building **cleanupblastgraph** [ 75%] Building **po_tree** ......OK dynamic linking was successful for proteinortho_clustering! [100%] Everything is compiled with no errors. make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' dh_auto_test -a make -j4 test make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' [TEST] Clean up all test files... [TEST] 1. basic proteinortho6.pl -step=2 test. (algorithms that are not present are skipped) [TEST] Clean up all test files... [1/12] -p=blastp+ test: passed [3/12] -p=diamond test: diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. passed [4/12] -p=diamond (--moresensitive) test (subparaBlast): diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. passed [5/12] -p=lastp (lastal) test: lastal missing, skipping... [6/12] -p=topaz test: topaz missing, skipping... [7/12] -p=usearch test: usearch missing, skipping... [8/12] -p=ublast test: usearch missing, skipping... [9/12] -p=rapsearch test: rapsearch missing, skipping... [10/12] -p=blatp (blat) test: blat missing, skipping... [11/12] -p=mmseqsp (mmseqs) test: mmseqs missing, skipping... [12/12] -p=blastp (legacy blast) test: blastall missing, skipping... [TEST] 2. -step=3 tests (proteinortho_clustering) [1/2] various test functions of proteinortho_clustering (-test): passed [2/2] Compare results of 'with lapack' and 'without lapack': passed [TEST] All tests passed make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' dh_auto_install --buildsystem=makefile -- install PREFIX=/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho make -j4 install DESTDIR=/<>/proteinortho-6.0.8\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" install PREFIX=/<>/proteinortho-6.0.8\+dfsg/debian/proteinortho/usr/lib/proteinortho make[2]: Entering directory '/<>/proteinortho-6.0.8+dfsg' INSTALLING everything to /<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho 'proteinortho6.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho6.pl' 'proteinortho' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho' 'src/BUILD/Linux_s390x/proteinortho_extract_from_graph.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_extract_from_graph.pl' 'src/BUILD/Linux_s390x/proteinortho_formatUsearch.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_formatUsearch.pl' 'src/BUILD/Linux_s390x/proteinortho_compareProteinorthoGraphs.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_compareProteinorthoGraphs.pl' 'src/BUILD/Linux_s390x/proteinortho_do_mcl.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_do_mcl.pl' 'src/BUILD/Linux_s390x/proteinortho2html.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho2html.pl' 'src/BUILD/Linux_s390x/proteinortho2xml.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho2xml.pl' 'src/BUILD/Linux_s390x/proteinortho_clustering' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_clustering' 'src/BUILD/Linux_s390x/proteinortho_singletons.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_singletons.pl' 'src/BUILD/Linux_s390x/proteinortho_ffadj_mcs.py' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_ffadj_mcs.py' 'src/BUILD/Linux_s390x/proteinortho2tree.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho2tree.pl' 'src/BUILD/Linux_s390x/proteinortho_cleanupblastgraph' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_cleanupblastgraph' 'src/BUILD/Linux_s390x/proteinortho_graphMinusRemovegraph' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_graphMinusRemovegraph' 'src/BUILD/Linux_s390x/proteinortho_treeBuilderCore' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_treeBuilderCore' 'src/BUILD/Linux_s390x/proteinortho_grab_proteins.pl' -> '/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho_grab_proteins.pl' Everything installed successfully to /<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho. If needed you can add /<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho to $PATH with 'export PATH=$PATH:/<>/proteinortho-6.0.8+dfsg/debian/proteinortho/usr/lib/proteinortho'. make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>/proteinortho-6.0.8+dfsg' dh_fixperms find debian \( -name "*.faa" -o -name "*.gff" \) -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/proteinortho-6.0.8+dfsg' dh_missing -a dh_dwz -a dwz: debian/proteinortho/usr/lib/proteinortho/proteinortho_treeBuilderCore: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package proteinortho: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 pkgstriptranslations: processing proteinortho (in debian/proteinortho); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/proteinortho/DEBIAN/control, package proteinortho, directory debian/proteinortho pkgstripfiles: Running PNG optimization (using 4 cpus) for package proteinortho ... pkgstripfiles: No PNG files. dpkg-deb: building package 'proteinortho' in '../proteinortho_6.0.8+dfsg-1build1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../proteinortho_6.0.8+dfsg-1build1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200114-1014 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proteinortho_6.0.8+dfsg-1build1_s390x.changes: ---------------------------------------------- Format: 1.8 Date: Mon, 14 Oct 2019 14:44:15 +0200 Source: proteinortho Binary: proteinortho Architecture: s390x Version: 6.0.8+dfsg-1build1 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: proteinortho - Detection of (Co-)orthologs in large-scale protein analysis Changes: proteinortho (6.0.8+dfsg-1build1) eoan; urgency=medium . * Rebuild against diamond-aligner amd64 only. Checksums-Sha1: 04cbe3d493e7050ea601cef5aec3cd80cb31c15c 5872 proteinortho_6.0.8+dfsg-1build1_s390x.buildinfo ab265f7f8fa429f6cae24d44fb4b5e58260a6ec6 196196 proteinortho_6.0.8+dfsg-1build1_s390x.deb Checksums-Sha256: 065c5ad229b002f8c6202dfe751e377c8dfd43a395399b23231484368d33c7f7 5872 proteinortho_6.0.8+dfsg-1build1_s390x.buildinfo a09d2d6e3ea04e923d0d09e8c14af361c7d34b7cf13bde5f71f4ccb867b1a005 196196 proteinortho_6.0.8+dfsg-1build1_s390x.deb Files: 0727e9b14b0d7c3737cd2ebd2fd58120 5872 science optional proteinortho_6.0.8+dfsg-1build1_s390x.buildinfo 7b50447fd4e8e70e12392b152426650c 196196 science optional proteinortho_6.0.8+dfsg-1build1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proteinortho_6.0.8+dfsg-1build1_s390x.deb ----------------------------------------- new debian package, version 2.0. size 196196 bytes: control archive=1820 bytes. 1034 bytes, 18 lines control 2576 bytes, 33 lines md5sums Package: proteinortho Version: 6.0.8+dfsg-1build1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 840 Depends: libc6 (>= 2.7), libgcc-s1 (>= 3.0), libgomp1 (>= 6), liblapack3, libstdc++6 (>= 5.2), ncbi-blast+, diamond-aligner, python3 Section: science Priority: optional Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Description: Detection of (Co-)orthologs in large-scale protein analysis Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes. drwxr-xr-x root/root 0 2019-10-14 12:44 ./ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/bin/ lrwxrwxrwx root/root 0 2019-10-14 12:44 ./usr/bin/proteinortho -> proteinortho6 -rwxr-xr-x root/root 52 2019-09-25 14:39 ./usr/bin/proteinortho6 drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/lib/ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/lib/proteinortho/ -rwxr-xr-x root/root 130987 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho -rwxr-xr-x root/root 36280 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho2html.pl -rwxr-xr-x root/root 4997 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho2tree.pl -rwxr-xr-x root/root 4697 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho2xml.pl -rwxr-xr-x root/root 130987 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho6.pl -rwxr-xr-x root/root 35072 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_cleanupblastgraph -rwxr-xr-x root/root 170304 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_clustering -rwxr-xr-x root/root 1239 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_compareProteinorthoGraphs.pl -rwxr-xr-x root/root 8787 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_do_mcl.pl -rwxr-xr-x root/root 1166 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_extract_from_graph.pl -rwxr-xr-x root/root 32879 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_ffadj_mcs.py -rwxr-xr-x root/root 479 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_formatUsearch.pl -rwxr-xr-x root/root 10913 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_grab_proteins.pl -rwxr-xr-x root/root 30984 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_graphMinusRemovegraph -rwxr-xr-x root/root 1616 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_singletons.pl -rwxr-xr-x root/root 14264 2019-10-14 12:44 ./usr/lib/proteinortho/proteinortho_treeBuilderCore drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/doc/proteinortho/ -rw-r--r-- root/root 263 2019-09-25 14:39 ./usr/share/doc/proteinortho/README.test -rw-r--r-- root/root 847 2019-10-14 12:44 ./usr/share/doc/proteinortho/changelog.Debian.gz -rw-r--r-- root/root 1080 2019-09-25 14:39 ./usr/share/doc/proteinortho/copyright drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/doc/proteinortho/examples/ -rw-r--r-- root/root 52855 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/C.faa -rw-r--r-- root/root 18467 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/C.gff -rw-r--r-- root/root 751 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/C2.faa -rw-r--r-- root/root 120 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/C2.gff -rw-r--r-- root/root 55942 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/E.faa -rw-r--r-- root/root 18666 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/E.gff -rw-r--r-- root/root 27375 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/L.faa -rw-r--r-- root/root 2376 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/L.gff -rw-r--r-- root/root 27690 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/M.faa -rw-r--r-- root/root 2317 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/M.gff -rwxr-xr-x root/root 262 2019-09-25 12:29 ./usr/share/doc/proteinortho/examples/chk_test.pl -rw-r--r-- root/root 432 2019-09-25 14:39 ./usr/share/doc/proteinortho/run-unit-test drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/man/ drwxr-xr-x root/root 0 2019-10-14 12:44 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2019-10-14 12:44 ./usr/share/man/man1/proteinortho.1.gz -> proteinortho6.1.gz -rw-r--r-- root/root 1562 2019-10-14 12:44 ./usr/share/man/man1/proteinortho6.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 8268 Build-Time: 34 Distribution: focal Host Architecture: s390x Install-Time: 10 Job: proteinortho_6.0.8+dfsg-1build1.dsc Machine Architecture: s390x Package: proteinortho Package-Time: 44 Source-Version: 6.0.8+dfsg-1build1 Space: 8268 Status: successful Version: 6.0.8+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 20200114-1014 Build needed 00:00:44, 8268k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18429744 Scanning for processes to kill in build PACKAGEBUILD-18429744