https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal-gcc10/+build/18432567 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-066 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Feb 18:29:27 ntpdate[1940]: adjust time server 10.211.37.1 offset 0.059854 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18432567 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 Starting target for build PACKAGEBUILD-18432567 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 'deb http://ppa.launchpad.net/doko/toolchain/ubuntu focal main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal main' 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18432567 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 Adding trusted keys to build-PACKAGEBUILD-18432567 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-01-18 [SC] 352B AA4B C10A 077D 04D2 8CAF 726C 32B5 38D0 4956 uid [ unknown] Launchpad PPA for Matthias Klose pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 Updating target for build PACKAGEBUILD-18432567 Get:1 http://ppa.launchpad.net/doko/toolchain/ubuntu focal InRelease [20.8 kB] Get:2 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal InRelease [15.4 kB] Get:4 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main armhf Packages [10.6 kB] Get:5 http://ppa.launchpad.net/doko/toolchain/ubuntu focal/main Translation-en [8736 B] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf Packages [941 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf Packages [3840 B] Get:9 http://ftpmaster.internal/ubuntu focal/restricted armhf Packages [7060 B] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main Translation-en [7420 B] Get:11 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [6132 B] Get:12 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8360 kB] Get:13 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5147 kB] Get:14 http://ftpmaster.internal/ubuntu focal/multiverse armhf Packages [117 kB] Get:15 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [106 kB] Fetched 15.5 MB in 7s (2337 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-9 libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libctf-nobfd0 libctf0 libffi7 libgcc-10-dev libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libstdc++-10-dev perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp cpp-9 debianutils e2fsprogs fdisk g++ g++-9 gcc gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 106 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. Need to get 192 MB of archives. After this operation, 510 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf g++ armhf 4:10-1ubuntu1 [1620 B] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf gcc armhf 4:10-1ubuntu1 [5232 B] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf cpp armhf 4:10-1ubuntu1 [27.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf linux-libc-dev armhf 5.4.0-12.15 [1085 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200211-1ubuntu1 [18.8 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200211-1ubuntu1 [36.5 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:10-20200211-1ubuntu1 [36.4 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu5 [58.3 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8-1ubuntu1 [217 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu5 [125 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu5 [19.7 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu5 [163 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu5 [135 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu5 [89.1 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu5 [109 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu5 [957 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.251ubuntu1 [5592 B] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.36-7ubuntu1 [49.8 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200211-1ubuntu1 [440 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244.1-0ubuntu3 [9372 B] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1 [9692 B] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.27-1 [12.7 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244.1-0ubuntu3 [69.5 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu8 [118 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu1 [163 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu5 [108 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244.1-0ubuntu3 [3533 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244.1-0ubuntu3 [241 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.9 [776 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.9 [1236 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.3-4ubuntu3 [9172 B] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.3-4ubuntu3 [168 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.3-4ubuntu3 [506 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8-1ubuntu1 [748 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200211-1ubuntu1 [86.5 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200211-1ubuntu1 [7244 B] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libasan5 armhf 9.2.1-28ubuntu1 [387 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200211-1ubuntu1 [121 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf g++-9 armhf 9.2.1-28ubuntu1 [6681 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9 armhf 9.2.1-28ubuntu1 [6537 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++-9-dev armhf 9.2.1-28ubuntu1 [1779 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-9-dev armhf 9.2.1-28ubuntu1 [690 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200211-1ubuntu1 [34.3 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-1ubuntu1 [2093 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-1ubuntu1 [319 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.34-1ubuntu1 [3368 B] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.34-1ubuntu1 [206 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf libctf-nobfd0 armhf 2.34-1ubuntu1 [37.3 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf libctf0 armhf 2.34-1ubuntu1 [37.0 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf cpp-9 armhf 9.2.1-28ubuntu1 [5874 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9-base armhf 9.2.1-28ubuntu1 [19.0 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main armhf libcom-err2 armhf 1.45.3-4ubuntu3 [8164 B] Get:107 http://ftpmaster.internal/ubuntu focal/main armhf libss2 armhf 1.45.3-4ubuntu3 [9384 B] Get:108 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.30.1-1ubuntu1 [460 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:111 http://ftpmaster.internal/ubuntu focal/universe armhf cpp-10 armhf 10-20200211-1ubuntu1 [41.6 MB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf libasan6 armhf 10-20200211-1ubuntu1 [326 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-10-dev armhf 10-20200211-1ubuntu1 [649 kB] Get:114 http://ftpmaster.internal/ubuntu focal/universe armhf gcc-10 armhf 10-20200211-1ubuntu1 [46.6 MB] Get:115 http://ftpmaster.internal/ubuntu focal/universe armhf libstdc++-10-dev armhf 10-20200211-1ubuntu1 [1744 kB] Get:116 http://ftpmaster.internal/ubuntu focal/universe armhf g++-10 armhf 10-20200211-1ubuntu1 [44.7 MB] Get:117 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 192 MB in 8s (25.5 MB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_armhf.deb ... Unpacking libc6-dev:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-12.15_armhf.deb ... Unpacking linux-libc-dev:armhf (5.4.0-12.15) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200211-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200211-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:armhf (10-20200211-1ubuntu1) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc1 (1:10-20200211-1ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1 (1:10-20200211-1ubuntu1) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../libc6_2.30-0ubuntu3_armhf.deb ... Unpacking libc6:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc6:armhf (2.30-0ubuntu3) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu2_armhf.deb ... Unpacking base-files (11ubuntu2) over (10.2ubuntu7) ... Setting up base-files (11ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_armhf.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_armhf.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu5_armhf.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu5) over (1:2.34-0.1ubuntu2) ... Setting up bsdutils (1:2.34-0.1ubuntu5) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../archives/grep_3.4-1_armhf.deb ... Unpacking grep (3.4-1) over (3.3-1build1) ... Setting up grep (3.4-1) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../gzip_1.10-0ubuntu4_armhf.deb ... Unpacking gzip (1.10-0ubuntu4) over (1.10-0ubuntu3) ... Setting up gzip (1.10-0ubuntu4) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../hostname_3.23_armhf.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12501 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8-1ubuntu1_armhf.deb ... Unpacking login (1:4.8-1ubuntu1) over (1:4.5-1.1ubuntu4) ... Setting up login (1:4.8-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Removing obsolete conffile /etc/securetty ... (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking ncurses-bin (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-bin (6.1+20191019-1ubuntu1) ... (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../perl_5.30.0-9_armhf.deb ... Unpacking perl (5.30.0-9) over (5.28.1-6build1) ... Replacing files in old package perl-base (5.28.1-6build1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libperl5.30:armhf. Preparing to unpack .../libperl5.30_5.30.0-9_armhf.deb ... Unpacking libperl5.30:armhf (5.30.0-9) ... Preparing to unpack .../perl-base_5.30.0-9_armhf.deb ... Unpacking perl-base (5.30.0-9) over (5.28.1-6build1) ... Setting up perl-base (5.30.0-9) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-2_armhf.deb ... Unpacking bzip2 (1.0.8-2) over (1.0.6-9.2) ... Preparing to unpack .../libbz2-1.0_1.0.8-2_armhf.deb ... Unpacking libbz2-1.0:armhf (1.0.8-2) over (1.0.6-9.2) ... Setting up libbz2-1.0:armhf (1.0.8-2) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1ubuntu5_armhf.deb ... Unpacking libblkid1:armhf (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up libblkid1:armhf (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu5_armhf.deb ... Unpacking libuuid1:armhf (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up libuuid1:armhf (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1ubuntu5_armhf.deb ... Unpacking libfdisk1:armhf (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up libfdisk1:armhf (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-7_armhf.deb ... Unpacking libpcre2-8-0:armhf (10.34-7) over (10.32-5) ... Setting up libpcre2-8-0:armhf (10.34-7) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1_armhf.deb ... Unpacking libselinux1:armhf (3.0-1) over (2.9-2) ... Setting up libselinux1:armhf (3.0-1) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1ubuntu5_armhf.deb ... Unpacking libmount1:armhf (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up libmount1:armhf (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libncurses6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libncurses6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Preparing to unpack .../libtinfo6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libtinfo6:armhf (6.1+20191019-1ubuntu1) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20191019-1ubuntu1_armhf.deb ... Unpacking libncursesw6:armhf (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libncursesw6:armhf (6.1+20191019-1ubuntu1) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1ubuntu5_armhf.deb ... Unpacking libsmartcols1:armhf (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up libsmartcols1:armhf (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1ubuntu5_armhf.deb ... Unpacking fdisk (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up fdisk (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1ubuntu5_armhf.deb ... Unpacking util-linux (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Setting up util-linux (2.34-0.1ubuntu5) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.251ubuntu1_armhf.deb ... Unpacking libdebconfclient0:armhf (0.251ubuntu1) over (0.249ubuntu1) ... Setting up libdebconfclient0:armhf (0.251ubuntu1) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.47_armhf.deb ... Unpacking base-passwd (3.5.47) over (3.5.46) ... Setting up base-passwd (3.5.47) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../libc-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc-bin (2.30-0ubuntu3) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20191019-1ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-base (6.1+20191019-1ubuntu1) ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../lsb-base_11.1.0ubuntu2_all.deb ... Unpacking lsb-base (11.1.0ubuntu2) over (11.0.1ubuntu1) ... Setting up lsb-base (11.1.0ubuntu2) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-1ubuntu1_armhf.deb ... Unpacking sysvinit-utils (2.96-1ubuntu1) over (2.95-5ubuntu2) ... Setting up sysvinit-utils (2.96-1ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.36-7ubuntu1_armhf.deb ... Unpacking libgpg-error0:armhf (1.36-7ubuntu1) over (1.36-7) ... Setting up libgpg-error0:armhf (1.36-7ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-3ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.5-3ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:armhf (1.8.5-3ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.2-2_armhf.deb ... Unpacking liblz4-1:armhf (1.9.2-2) over (1.9.1-1) ... Setting up liblz4-1:armhf (1.9.2-2) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200211-1ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Setting up libstdc++6:armhf (10-20200211-1ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../systemd-sysv_244.1-0ubuntu3_armhf.deb ... Unpacking systemd-sysv (244.1-0ubuntu3) over (242-7ubuntu3) ... Preparing to unpack .../libacl1_2.2.53-5ubuntu1_armhf.deb ... Unpacking libacl1:armhf (2.2.53-5ubuntu1) over (2.2.53-4) ... Setting up libacl1:armhf (2.2.53-5ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.13.3-7ubuntu1_armhf.deb ... Unpacking libapparmor1:armhf (2.13.3-7ubuntu1) over (2.13.3-5ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu5_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu5) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.1_armhf.deb ... Unpacking libcap-ng0:armhf (0.7.9-2.1) over (0.7.9-2) ... Setting up libcap-ng0:armhf (0.7.9-2.1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu5_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:armhf (1:2.8.5-2ubuntu5) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.27-1_armhf.deb ... Unpacking libcap2:armhf (1:2.27-1) over (1:2.25-2) ... Preparing to unpack .../libudev1_244.1-0ubuntu3_armhf.deb ... Unpacking libudev1:armhf (244.1-0ubuntu3) over (242-7ubuntu3) ... Setting up libudev1:armhf (244.1-0ubuntu3) ... (Reading database ... 14397 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.155-2ubuntu8_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.155-2ubuntu8) over (2:1.02.155-2ubuntu6) ... Preparing to unpack .../libjson-c4_0.13.1+dfsg-6_armhf.deb ... Unpacking libjson-c4:armhf (0.13.1+dfsg-6) over (0.13.1+dfsg-4) ... Preparing to unpack .../libssl1.1_1.1.1d-2ubuntu3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-2ubuntu3) over (1.1.1c-1ubuntu4) ... Preparing to unpack .../libcryptsetup12_2%3a2.2.2-3ubuntu1_armhf.deb ... Unpacking libcryptsetup12:armhf (2:2.2.2-3ubuntu1) over (2:2.2.0-3ubuntu1) ... Selecting previously unselected package libnettle7:armhf. Preparing to unpack .../libnettle7_3.5.1+really3.5.1-2_armhf.deb ... Unpacking libnettle7:armhf (3.5.1+really3.5.1-2) ... Setting up libnettle7:armhf (3.5.1+really3.5.1-2) ... Selecting previously unselected package libhogweed5:armhf. (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libhogweed5_3.5.1+really3.5.1-2_armhf.deb ... Unpacking libhogweed5:armhf (3.5.1+really3.5.1-2) ... Setting up libhogweed5:armhf (3.5.1+really3.5.1-2) ... Selecting previously unselected package libffi7:armhf. (Reading database ... 14408 files and directories currently installed.) Preparing to unpack .../libffi7_3.3-3_armhf.deb ... Unpacking libffi7:armhf (3.3-3) ... Setting up libffi7:armhf (3.3-3) ... (Reading database ... 14413 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.20-1build1_armhf.deb ... Unpacking libp11-kit0:armhf (0.23.20-1build1) over (0.23.17-2) ... Setting up libp11-kit0:armhf (0.23.20-1build1) ... (Reading database ... 14413 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.15.0-2_armhf.deb ... Unpacking libtasn1-6:armhf (4.15.0-2) over (4.14-3) ... Setting up libtasn1-6:armhf (4.15.0-2) ... (Reading database ... 14413 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.11.1-2ubuntu2_armhf.deb ... Unpacking libgnutls30:armhf (3.6.11.1-2ubuntu2) over (3.6.9-5ubuntu1) ... Setting up libgnutls30:armhf (3.6.11.1-2ubuntu2) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../libkmod2_26-3ubuntu1_armhf.deb ... Unpacking libkmod2:armhf (26-3ubuntu1) over (26-1ubuntu1) ... Preparing to unpack .../libpam0g_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam0g:armhf (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam0g:armhf (1.3.1-5ubuntu4) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.2-2ubuntu2_armhf.deb ... Unpacking libseccomp2:armhf (2.4.2-2ubuntu2) over (2.4.1-0ubuntu0.19.10.3) ... Setting up libseccomp2:armhf (2.4.2-2ubuntu2) ... (Reading database ... 14412 files and directories currently installed.) Preparing to unpack .../mount_2.34-0.1ubuntu5_armhf.deb ... Unpacking mount (2.34-0.1ubuntu5) over (2.34-0.1ubuntu2) ... Preparing to unpack .../systemd_244.1-0ubuntu3_armhf.deb ... Unpacking systemd (244.1-0ubuntu3) over (242-7ubuntu3) ... Preparing to unpack .../libsystemd0_244.1-0ubuntu3_armhf.deb ... Unpacking libsystemd0:armhf (244.1-0ubuntu3) over (242-7ubuntu3) ... Setting up libsystemd0:armhf (244.1-0ubuntu3) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.4+dfsg-1_armhf.deb ... Unpacking libzstd1:armhf (1.4.4+dfsg-1) over (1.4.3+dfsg-1) ... Setting up libzstd1:armhf (1.4.4+dfsg-1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.90_1.9.9_armhf.deb ... Unpacking libapt-pkg5.90:armhf (1.9.9) over (1.9.4) ... Setting up libapt-pkg5.90:armhf (1.9.9) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpgv (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Setting up gpgv (2.2.17-3ubuntu1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2020.02.11.1_all.deb ... Unpacking ubuntu-keyring (2020.02.11.1) over (2018.09.18.1) ... Setting up ubuntu-keyring (2020.02.11.1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../archives/apt_1.9.9_armhf.deb ... Unpacking apt (1.9.9) over (1.9.4) ... Setting up apt (1.9.9) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules-bin (1.3.1-5ubuntu4) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu4_armhf.deb ... Unpacking libpam-modules:armhf (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules:armhf (1.3.1-5ubuntu4) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../logsave_1.45.3-4ubuntu3_armhf.deb ... Unpacking logsave (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libext2fs2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libext2fs2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Setting up libext2fs2:armhf (1.45.3-4ubuntu3) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.3-4ubuntu3_armhf.deb ... Unpacking e2fsprogs (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libattr1_1%3a2.4.48-5_armhf.deb ... Unpacking libattr1:armhf (1:2.4.48-5) over (1:2.4.48-4) ... Setting up libattr1:armhf (1:2.4.48-5) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-runtime (1.3.1-5ubuntu4) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libsepol1_3.0-1_armhf.deb ... Unpacking libsepol1:armhf (3.0-1) over (2.9-2) ... Setting up libsepol1:armhf (3.0-1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.0-1_all.deb ... Unpacking libsemanage-common (3.0-1) over (2.9-3) ... Setting up libsemanage-common (3.0-1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1_armhf.deb ... Unpacking libsemanage1:armhf (3.0-1) over (2.9-3) ... Setting up libsemanage1:armhf (3.0-1) ... (Reading database ... 14405 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8-1ubuntu1_armhf.deb ... Unpacking passwd (1:4.8-1ubuntu1) over (1:4.5-1.1ubuntu4) ... Setting up passwd (1:4.8-1ubuntu1) ... Removing obsolete conffile /etc/cron.daily/passwd ... (Reading database ... 14398 files and directories currently installed.) Preparing to unpack .../00-libgomp1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../01-libatomic1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../02-libasan5_9.2.1-28ubuntu1_armhf.deb ... Unpacking libasan5:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../03-libubsan1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../04-g++-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking g++-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../05-gcc-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking gcc-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../06-libstdc++-9-dev_9.2.1-28ubuntu1_armhf.deb ... Unpacking libstdc++-9-dev:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../07-libgcc-9-dev_9.2.1-28ubuntu1_armhf.deb ... Unpacking libgcc-9-dev:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libisl22:armhf. Preparing to unpack .../08-libisl22_0.22-2_armhf.deb ... Unpacking libisl22:armhf (0.22-2) ... Preparing to unpack .../09-libcc1-0_10-20200211-1ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (10-20200211-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../10-binutils-arm-linux-gnueabihf_2.34-1ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../11-libbinutils_2.34-1ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../12-binutils_2.34-1ubuntu1_armhf.deb ... Unpacking binutils (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../13-binutils-common_2.34-1ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.34-1ubuntu1) over (2.33-2ubuntu1) ... Selecting previously unselected package libctf-nobfd0:armhf. Preparing to unpack .../14-libctf-nobfd0_2.34-1ubuntu1_armhf.deb ... Unpacking libctf-nobfd0:armhf (2.34-1ubuntu1) ... Selecting previously unselected package libctf0:armhf. Preparing to unpack .../15-libctf0_2.34-1ubuntu1_armhf.deb ... Unpacking libctf0:armhf (2.34-1ubuntu1) ... Preparing to unpack .../16-cpp-9_9.2.1-28ubuntu1_armhf.deb ... Unpacking cpp-9 (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../17-gcc-9-base_9.2.1-28ubuntu1_armhf.deb ... Unpacking gcc-9-base:armhf (9.2.1-28ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../18-libcom-err2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libcom-err2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../19-libss2_1.45.3-4ubuntu3_armhf.deb ... Unpacking libss2:armhf (1.45.3-4ubuntu3) over (1.45.3-4ubuntu2) ... Preparing to unpack .../20-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) over (0.0.12) ... Preparing to unpack .../21-libsqlite3-0_3.30.1-1ubuntu1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.30.1-1ubuntu1) over (3.29.0-2) ... Preparing to unpack .../22-openssl_1.1.1d-2ubuntu3_armhf.deb ... Unpacking openssl (1.1.1d-2ubuntu3) over (1.1.1c-1ubuntu4) ... Selecting previously unselected package cpp-10. Preparing to unpack .../23-cpp-10_10-20200211-1ubuntu1_armhf.deb ... Unpacking cpp-10 (10-20200211-1ubuntu1) ... Selecting previously unselected package libasan6:armhf. Preparing to unpack .../24-libasan6_10-20200211-1ubuntu1_armhf.deb ... Unpacking libasan6:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-10-dev:armhf. Preparing to unpack .../25-libgcc-10-dev_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc-10-dev:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package gcc-10. Preparing to unpack .../26-gcc-10_10-20200211-1ubuntu1_armhf.deb ... Unpacking gcc-10 (10-20200211-1ubuntu1) ... Selecting previously unselected package libstdc++-10-dev:armhf. Preparing to unpack .../27-libstdc++-10-dev_10-20200211-1ubuntu1_armhf.deb ... Unpacking libstdc++-10-dev:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package g++-10. Preparing to unpack .../28-g++-10_10-20200211-1ubuntu1_armhf.deb ... Unpacking g++-10 (10-20200211-1ubuntu1) ... Preparing to unpack .../29-g++_4%3a10-1ubuntu1_armhf.deb ... Unpacking g++ (4:10-1ubuntu1) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../30-gcc_4%3a10-1ubuntu1_armhf.deb ... Unpacking gcc (4:10-1ubuntu1) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../31-cpp_4%3a10-1ubuntu1_armhf.deb ... Unpacking cpp (4:10-1ubuntu1) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../32-libassuan0_2.5.3-7ubuntu2_armhf.deb ... Unpacking libassuan0:armhf (2.5.3-7ubuntu2) over (2.5.3-7ubuntu1) ... Preparing to unpack .../33-gpg_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpg (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../34-gpgconf_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpgconf (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../35-gpg-agent_2.2.17-3ubuntu1_armhf.deb ... Unpacking gpg-agent (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../36-liblockfile-bin_1.16-1.1_armhf.deb ... Unpacking liblockfile-bin (1.16-1.1) over (1.15-1) ... Preparing to unpack .../37-liblockfile1_1.16-1.1_armhf.deb ... Unpacking liblockfile1:armhf (1.16-1.1) over (1.15-1) ... Setting up libapparmor1:armhf (2.13.3-7ubuntu1) ... Setting up liblockfile-bin (1.16-1.1) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libssl1.1:armhf (1.1.1d-2ubuntu3) ... Setting up libsqlite3-0:armhf (3.30.1-1ubuntu1) ... Setting up binutils-common:armhf (2.34-1ubuntu1) ... Setting up linux-libc-dev:armhf (5.4.0-12.15) ... Setting up libctf-nobfd0:armhf (2.34-1ubuntu1) ... Setting up libcom-err2:armhf (1.45.3-4ubuntu3) ... Setting up libassuan0:armhf (2.5.3-7ubuntu2) ... Setting up libgomp1:armhf (10-20200211-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:armhf (1:2.27-1) ... Setting up libasan6:armhf (10-20200211-1ubuntu1) ... Setting up libncurses6:armhf (6.1+20191019-1ubuntu1) ... Setting up libatomic1:armhf (10-20200211-1ubuntu1) ... Setting up libss2:armhf (1.45.3-4ubuntu3) ... Setting up logsave (1.45.3-4ubuntu3) ... Setting up libubsan1:armhf (10-20200211-1ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.155-2ubuntu8) ... Setting up mount (2.34-0.1ubuntu5) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-9) ... Setting up libisl22:armhf (0.22-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-6) ... Setting up libbinutils:armhf (2.34-1ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:armhf (10-20200211-1ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up cpp-10 (10-20200211-1ubuntu1) ... Setting up libkmod2:armhf (26-3ubuntu1) ... Setting up gcc-9-base:armhf (9.2.1-28ubuntu1) ... Setting up libctf0:armhf (2.34-1ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libgcc-10-dev:armhf (10-20200211-1ubuntu1) ... Setting up e2fsprogs (1.45.3-4ubuntu3) ... Setting up libasan5:armhf (9.2.1-28ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp (4:10-1ubuntu1) ... Setting up cpp-9 (9.2.1-28ubuntu1) ... Setting up libc6-dev:armhf (2.30-0ubuntu3) ... Setting up libcryptsetup12:armhf (2:2.2.2-3ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.34-1ubuntu1) ... Setting up libstdc++-10-dev:armhf (10-20200211-1ubuntu1) ... Setting up systemd (244.1-0ubuntu3) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-1ubuntu1) ... Setting up libgcc-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up gcc-10 (10-20200211-1ubuntu1) ... Setting up gcc-9 (9.2.1-28ubuntu1) ... Setting up systemd-sysv (244.1-0ubuntu3) ... Setting up g++-10 (10-20200211-1ubuntu1) ... Setting up libstdc++-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up gcc (4:10-1ubuntu1) ... Setting up g++-9 (9.2.1-28ubuntu1) ... Setting up g++ (4:10-1ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18432567 armhf focal -c chroot:build-PACKAGEBUILD-18432567 --arch=armhf --dist=focal --nolog python-pybedtools_0.8.0-3.dsc Initiating build PACKAGEBUILD-18432567 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-066.buildd +==============================================================================+ | python-pybedtools 0.8.0-3 (armhf) 12 Feb 2020 18:31 | +==============================================================================+ Package: python-pybedtools Version: 0.8.0-3 Source Version: 0.8.0-3 Distribution: focal Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/python-pybedtools-1doC1P/python-pybedtools-0.8.0' with '<>' I: NOTICE: Log filtering will replace 'build/python-pybedtools-1doC1P' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18432567/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-pybedtools_0.8.0-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Inltkc/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Inltkc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Inltkc/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Inltkc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Inltkc/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Inltkc/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (35.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Inltkc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (41.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15368 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 12), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-python-pybedtools-dummy' in '/<>/resolver-YJsDBf/apt_archive/sbuild-build-depends-python-pybedtools-dummy.deb'. Ign:1 copy:/<>/resolver-YJsDBf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YJsDBf/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YJsDBf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YJsDBf/apt_archive ./ Sources [317 B] Get:5 copy:/<>/resolver-YJsDBf/apt_archive ./ Packages [642 B] Fetched 3078 B in 0s (46.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-pybedtools build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 libstdc++-9-dev perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcairo2 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-atomicwrites python3-attr python3-babel python3-certifi python3-chardet python3-cycler python3-dateutil python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-requests python3-roman python3-setuptools python3-six python3-sphinx python3-tk python3-tz python3-urllib3 python3-wcwidth python3-yaml python3-zipp python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal r-base-core sgml-base sphinx-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libjs-jquery-ui-docs tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt4 python3-scipy python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc gfortran python-numpy-doc python3-numpy-dbg python-pandas-doc python3-statsmodels python-psutil-doc subversion python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-setuptools-doc imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc texlive-fonts-recommended texlive-plain-generic tix python3-tk-dbg python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pil python3-scipy python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcairo2 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-atomicwrites python3-attr python3-babel python3-certifi python3-chardet python3-cycler python3-dateutil python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-requests python3-roman python3-setuptools python3-six python3-sphinx python3-tk python3-tz python3-urllib3 python3-wcwidth python3-yaml python3-zipp python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal r-base-core sbuild-build-depends-python-pybedtools-dummy sgml-base sphinx-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev 0 upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 359 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YJsDBf/apt_archive ./ sbuild-build-depends-python-pybedtools-dummy 0.invalid.0 [972 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.7-minimal armhf 3.7.6-1ubuntu2 [541 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1 armhf 2.2.9-1 [53.2 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf python3.7-minimal armhf 3.7.6-1ubuntu2 [1350 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf python3-minimal armhf 3.7.5-1ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libmpdec2 armhf 2.4.2-2 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.7-stdlib armhf 3.7.6-1ubuntu2 [1688 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf python3.7 armhf 3.7.6-1ubuntu2 [304 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-stdlib armhf 3.7.5-1ubuntu1 [6844 B] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf python3 armhf 3.7.5-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8-minimal armhf 3.8.1-2ubuntu3 [697 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf python3.8-minimal armhf 3.8.1-2ubuntu3 [1577 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf sgml-base all 1.29.1 [12.4 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libfribidi0 armhf 1.0.8-2 [21.8 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.63.3-3 [1117 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libicu63 armhf 63.2-2 [8002 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu3 [554 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libyaml-0-2 armhf 0.2.2-1 [41.3 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf python3-pkg-resources all 44.0.0-1 [100 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf python3-six all 1.13.0-1build1 [12.0 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf python3-yaml armhf 5.3-1ubuntu2 [182 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf ucf all 3.0038+nmu1 [51.6 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libkeyutils1 armhf 1.6-6ubuntu1 [9172 B] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-3 armhf 1.17-6ubuntu4 [287 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu4 [101 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libxau6 armhf 1:1.0.9-0ubuntu1 [6612 B] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu1 [9160 B] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libxcb1 armhf 1.13.1-5build1 [41.3 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libx11-data all 2:1.6.8-1 [113 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libx11-6 armhf 2:1.6.8-1 [517 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libxext6 armhf 2:1.3.4-0ubuntu1 [24.2 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:53 http://ftpmaster.internal/ubuntu focal/universe armhf bedtools armhf 2.27.1+dfsg-4 [496 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [798 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libfreetype6 armhf 2.10.1-2 [283 kB] Get:56 http://ftpmaster.internal/ubuntu focal/universe armhf ttf-bitstream-vera all 1.10-8 [352 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libfontconfig1 armhf 2.13.1-2ubuntu2 [95.8 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libxft2 armhf 2.3.3-0ubuntu1 [32.5 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libtk8.6 armhf 8.6.10-1 [630 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4 [469 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf blt armhf 2.5.3+dfsg-4 [4944 B] Get:66 http://ftpmaster.internal/ubuntu focal/universe armhf cython3 armhf 0.29.14-0.1ubuntu2 [1913 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-12 [195 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.7.3ubuntu1 [52.1 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.7.3ubuntu1 [896 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf python3-distutils all 3.8.0-1 [142 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf dh-python all 4.20191017ubuntu5 [88.0 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf xml-core all 0.18+nmu1 [21.6 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf docutils-common all 0.16+dfsg-1 [116 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf fontconfig armhf 2.13.1-2ubuntu2 [169 kB] Get:86 http://ftpmaster.internal/ubuntu focal/universe armhf fonts-lyx all 2.3.4-1 [154 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libroken18-heimdal armhf 7.7.0+dfsg-1 [34.7 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-1 [140 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libblas3 armhf 3.9.0-1 [102 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libbrotli1 armhf 1.0.7-6 [268 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libpixman-1-0 armhf 0.38.4-0ubuntu1 [159 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libxcb-render0 armhf 1.13.1-5build1 [14.2 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf libxcb-shm0 armhf 1.13.1-5build1 [5540 B] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libcairo2 armhf 1.16.0-4ubuntu1 [503 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-1 [24.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-1 [78.5 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libwind0-heimdal armhf 7.7.0+dfsg-1 [46.9 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-1 [88.7 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-1 [170 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-1 [13.2 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-1 [80.0 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf libldap-common all 2.4.49+dfsg-1ubuntu1 [17.2 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-1ubuntu1 [133 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main armhf libnghttp2-14 armhf 1.40.0-1 [68.0 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main armhf libssh-4 armhf 0.9.3-2ubuntu1 [147 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main armhf libcurl3-gnutls armhf 7.66.0-1ubuntu1 [200 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf libcurl4 armhf 7.66.0-1ubuntu1 [201 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf libdatrie1 armhf 0.2.12-3 [15.2 kB] Get:112 http://ftpmaster.internal/ubuntu focal/universe armhf libdeflate0 armhf 1.5-2 [46.1 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1-dev armhf 2.2.9-1 [99.9 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran5 armhf 10-20200211-1ubuntu1 [251 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf libgraphite2-3 armhf 1.3.13-11 [62.7 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf libharfbuzz0b armhf 2.6.4-1ubuntu1 [346 kB] Get:117 http://ftpmaster.internal/ubuntu focal/universe armhf libhts3 armhf 1.10.2-2ubuntu1 [316 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf libice6 armhf 2:1.0.10-0ubuntu1 [34.1 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu1 [90.4 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:122 http://ftpmaster.internal/ubuntu focal/universe armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main armhf libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main armhf libjs-sphinxdoc all 1.8.5-5 [96.7 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main armhf liblapack3 armhf 3.9.0-1 [1733 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main armhf libthai-data all 0.1.28-3 [134 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main armhf libthai0 armhf 0.1.28-3 [14.7 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main armhf libpango-1.0-0 armhf 1.44.7-1ubuntu1 [144 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main armhf libpangoft2-1.0-0 armhf 1.44.7-1ubuntu1 [28.6 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main armhf libpangocairo-1.0-0 armhf 1.44.7-1ubuntu1 [20.7 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main armhf libpaper1 armhf 1.1.28 [12.1 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main armhf libpaper-utils armhf 1.1.28 [7960 B] Get:133 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.7 armhf 3.7.6-1ubuntu2 [1276 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.7-dev armhf 3.7.6-1ubuntu2 [2767 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-dev armhf 3.7.5-1ubuntu1 [6940 B] Get:136 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8-stdlib armhf 3.8.1-2ubuntu3 [1612 kB] Get:137 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8 armhf 3.8.1-2ubuntu3 [1390 kB] Get:138 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8-dev armhf 3.8.1-2ubuntu3 [3127 kB] Get:139 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-all-dev armhf 3.7.5-1ubuntu1 [1124 B] Get:140 http://ftpmaster.internal/ubuntu focal/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:141 http://ftpmaster.internal/ubuntu focal/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:143 http://ftpmaster.internal/ubuntu focal/main armhf libtiff5 armhf 4.1.0+git191117-2 [143 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:145 http://ftpmaster.internal/ubuntu focal/main armhf python-babel-localedata all 2.6.0+dfsg.1-1ubuntu1 [4071 kB] Get:146 http://ftpmaster.internal/ubuntu focal/universe armhf python-matplotlib-data all 3.0.2-2ubuntu1 [3775 kB] Get:147 http://ftpmaster.internal/ubuntu focal/main armhf python3.8 armhf 3.8.1-2ubuntu3 [360 kB] Get:148 http://ftpmaster.internal/ubuntu focal/main armhf python3-all armhf 3.7.5-1ubuntu1 [1120 B] Get:149 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] Get:150 http://ftpmaster.internal/ubuntu focal/main armhf python3.7-dev armhf 3.7.6-1ubuntu2 [518 kB] Get:151 http://ftpmaster.internal/ubuntu focal/main armhf python3-dev armhf 3.7.5-1ubuntu1 [1316 B] Get:152 http://ftpmaster.internal/ubuntu focal/main armhf python3.8-dev armhf 3.8.1-2ubuntu3 [515 kB] Get:153 http://ftpmaster.internal/ubuntu focal/main armhf python3-all-dev armhf 3.7.5-1ubuntu1 [1128 B] Get:154 http://ftpmaster.internal/ubuntu focal/universe armhf python3-atomicwrites all 1.1.5-2build1 [7016 B] Get:155 http://ftpmaster.internal/ubuntu focal/main armhf python3-attr all 19.3.0-1 [33.7 kB] Get:156 http://ftpmaster.internal/ubuntu focal/main armhf python3-tz all 2019.3-1 [24.4 kB] Get:157 http://ftpmaster.internal/ubuntu focal/main armhf python3-babel all 2.6.0+dfsg.1-1ubuntu1 [83.4 kB] Get:158 http://ftpmaster.internal/ubuntu focal/main armhf python3-certifi all 2019.11.28-1 [149 kB] Get:159 http://ftpmaster.internal/ubuntu focal/main armhf python3-chardet all 3.0.4-4build1 [80.4 kB] Get:160 http://ftpmaster.internal/ubuntu focal/universe armhf python3-cycler all 0.10.0-2 [8024 B] Get:161 http://ftpmaster.internal/ubuntu focal/main armhf python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] Get:162 http://ftpmaster.internal/ubuntu focal/main armhf python3-roman all 2.0.0-3build1 [8728 B] Get:163 http://ftpmaster.internal/ubuntu focal/main armhf python3-docutils all 0.16+dfsg-1 [368 kB] Get:164 http://ftpmaster.internal/ubuntu focal/main armhf python3-idna all 2.6-2build1 [32.8 kB] Get:165 http://ftpmaster.internal/ubuntu focal/main armhf python3-imagesize all 1.2.0-1 [5808 B] Get:166 http://ftpmaster.internal/ubuntu focal/main armhf python3-more-itertools all 4.2.0-1build1 [39.4 kB] Get:167 http://ftpmaster.internal/ubuntu focal/main armhf python3-zipp all 1.0.0-1 [5312 B] Get:168 http://ftpmaster.internal/ubuntu focal/main armhf python3-importlib-metadata all 1.5.0-1 [9992 B] Get:169 http://ftpmaster.internal/ubuntu focal/main armhf python3-markupsafe armhf 1.1.0-1build1 [13.8 kB] Get:170 http://ftpmaster.internal/ubuntu focal/main armhf python3-jinja2 all 2.10-2ubuntu2 [95.5 kB] Get:171 http://ftpmaster.internal/ubuntu focal/universe armhf python3-kiwisolver armhf 1.0.1-2build3 [73.9 kB] Get:172 http://ftpmaster.internal/ubuntu focal/main armhf python3-pyparsing all 2.4.6-1 [61.3 kB] Get:173 http://ftpmaster.internal/ubuntu focal/main armhf python3-numpy armhf 1:1.17.4-5ubuntu2 [4211 kB] Get:174 http://ftpmaster.internal/ubuntu focal/universe armhf python3-matplotlib armhf 3.0.2-2ubuntu1 [4508 kB] Get:175 http://ftpmaster.internal/ubuntu focal/universe armhf python3-nose all 1.3.7-5 [116 kB] Get:176 http://ftpmaster.internal/ubuntu focal/main armhf sphinx-common all 1.8.5-5 [491 kB] Get:177 http://ftpmaster.internal/ubuntu focal/main armhf python3-alabaster all 0.7.8-1build1 [18.7 kB] Get:178 http://ftpmaster.internal/ubuntu focal/main armhf python3-packaging all 20.0-1 [26.8 kB] Get:179 http://ftpmaster.internal/ubuntu focal/main armhf python3-pygments all 2.3.1+dfsg-1ubuntu2 [579 kB] Get:180 http://ftpmaster.internal/ubuntu focal/main armhf python3-urllib3 all 1.24.1-1ubuntu2 [83.9 kB] Get:181 http://ftpmaster.internal/ubuntu focal/main armhf python3-requests all 2.22.0-2build1 [46.7 kB] Get:182 http://ftpmaster.internal/ubuntu focal/main armhf python3-sphinx all 1.8.5-5 [482 kB] Get:183 http://ftpmaster.internal/ubuntu focal/universe armhf python3-numpydoc all 0.7.0-2 [18.6 kB] Get:184 http://ftpmaster.internal/ubuntu focal/universe armhf python3-pandas-lib armhf 0.25.3+dfsg-4 [7366 kB] Get:185 http://ftpmaster.internal/ubuntu focal/universe armhf python3-pandas all 0.25.3+dfsg-4 [1967 kB] Get:186 http://ftpmaster.internal/ubuntu focal/universe armhf python3-pluggy all 0.13.0-2 [18.4 kB] Get:187 http://ftpmaster.internal/ubuntu focal/main armhf python3-psutil armhf 5.5.1-1ubuntu2 [142 kB] Get:188 http://ftpmaster.internal/ubuntu focal/universe armhf python3-py all 1.8.1-1 [65.4 kB] Get:189 http://ftpmaster.internal/ubuntu focal/universe armhf python3-pysam armhf 0.15.4+ds-1 [2451 kB] Get:190 http://ftpmaster.internal/ubuntu focal/main armhf python3-wcwidth all 0.1.8+dfsg1-3 [17.4 kB] Get:191 http://ftpmaster.internal/ubuntu focal/universe armhf python3-pytest all 4.6.8-1ubuntu1 [177 kB] Get:192 http://ftpmaster.internal/ubuntu focal/main armhf python3-setuptools all 44.0.0-1 [257 kB] Get:193 http://ftpmaster.internal/ubuntu focal/main armhf python3-tk armhf 3.8.0-1 [105 kB] Get:194 http://ftpmaster.internal/ubuntu focal/main armhf zip armhf 3.0-11build1 [145 kB] Get:195 http://ftpmaster.internal/ubuntu focal/main armhf unzip armhf 6.0-25ubuntu1 [155 kB] Get:196 http://ftpmaster.internal/ubuntu focal/main armhf xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:197 http://ftpmaster.internal/ubuntu focal/universe armhf r-base-core armhf 3.6.2-2 [24.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 106 MB in 4s (29.7 MB/s) Selecting previously unselected package libpython3.7-minimal:armhf. (Reading database ... 15368 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.6-1ubuntu2_armhf.deb ... Unpacking libpython3.7-minimal:armhf (3.7.6-1ubuntu2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.6-1ubuntu2_armhf.deb ... Unpacking python3.7-minimal (3.7.6-1ubuntu2) ... Setting up libpython3.7-minimal:armhf (3.7.6-1ubuntu2) ... Setting up libexpat1:armhf (2.2.9-1) ... Setting up python3.7-minimal (3.7.6-1ubuntu2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15617 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64ubuntu1_all.deb ... Unpacking mime-support (3.64ubuntu1) ... Selecting previously unselected package libmpdec2:armhf. Preparing to unpack .../2-libmpdec2_2.4.2-2_armhf.deb ... Unpacking libmpdec2:armhf (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:armhf. Preparing to unpack .../3-libpython3.7-stdlib_3.7.6-1ubuntu2_armhf.deb ... Unpacking libpython3.7-stdlib:armhf (3.7.6-1ubuntu2) ... Selecting previously unselected package python3.7. Preparing to unpack .../4-python3.7_3.7.6-1ubuntu2_armhf.deb ... Unpacking python3.7 (3.7.6-1ubuntu2) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../5-libpython3-stdlib_3.7.5-1ubuntu1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.7.5-1ubuntu1) ... Setting up python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 16055 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3 (3.7.5-1ubuntu1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../003-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../004-groff-base_1.22.4-4_armhf.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../005-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../006-man-db_2.9.0-2_armhf.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libpython3.8-minimal:armhf. Preparing to unpack .../007-libpython3.8-minimal_3.8.1-2ubuntu3_armhf.deb ... Unpacking libpython3.8-minimal:armhf (3.8.1-2ubuntu3) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../008-python3.8-minimal_3.8.1-2ubuntu3_armhf.deb ... Unpacking python3.8-minimal (3.8.1-2ubuntu3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../009-sgml-base_1.29.1_all.deb ... Unpacking sgml-base (1.29.1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.38-4_armhf.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../011-libmagic1_1%3a5.38-4_armhf.deb ... Unpacking libmagic1:armhf (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.38-4_armhf.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../013-libelf1_0.176-1.1build1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1build1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../014-libfribidi0_1.0.8-2_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../015-libglib2.0-0_2.63.3-3_armhf.deb ... Unpacking libglib2.0-0:armhf (2.63.3-3) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../016-libicu63_63.2-2_armhf.deb ... Unpacking libicu63:armhf (63.2-2) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../017-libxml2_2.9.4+dfsg1-8ubuntu3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Selecting previously unselected package libyaml-0-2:armhf. Preparing to unpack .../018-libyaml-0-2_0.2.2-1_armhf.deb ... Unpacking libyaml-0-2:armhf (0.2.2-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../019-python3-pkg-resources_44.0.0-1_all.deb ... Unpacking python3-pkg-resources (44.0.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../020-python3-six_1.13.0-1build1_all.deb ... Unpacking python3-six (1.13.0-1build1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../021-python3-yaml_5.3-1ubuntu2_armhf.deb ... Unpacking python3-yaml (5.3-1ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../022-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../023-gettext-base_0.19.8.1-10_armhf.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../024-libkrb5support0_1.17-6ubuntu4_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../025-libk5crypto3_1.17-6ubuntu4_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../026-libkeyutils1_1.6-6ubuntu1_armhf.deb ... Unpacking libkeyutils1:armhf (1.6-6ubuntu1) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../027-libkrb5-3_1.17-6ubuntu4_armhf.deb ... Unpacking libkrb5-3:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../028-libgssapi-krb5-2_1.17-6ubuntu4_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../029-libpsl5_0.20.2-2_armhf.deb ... Unpacking libpsl5:armhf (0.20.2-2) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../030-libxau6_1%3a1.0.9-0ubuntu1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../031-libxdmcp6_1%3a1.1.3-0ubuntu1_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../032-libxcb1_1.13.1-5build1_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-5build1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../033-libx11-data_2%3a1.6.8-1_all.deb ... Unpacking libx11-data (2:1.6.8-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../034-libx11-6_2%3a1.6.8-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.8-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../035-libxext6_2%3a1.3.4-0ubuntu1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-0ubuntu1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../036-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../037-m4_1.4.18-4_armhf.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../038-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../039-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../040-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../041-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package bedtools. Preparing to unpack .../042-bedtools_2.27.1+dfsg-4_armhf.deb ... Unpacking bedtools (2.27.1+dfsg-4) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../043-libtcl8.6_8.6.10+dfsg-1_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.10+dfsg-1) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../044-libfreetype6_2.10.1-2_armhf.deb ... Unpacking libfreetype6:armhf (2.10.1-2) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../045-ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.13.1-2ubuntu2_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../047-libfontconfig1_2.13.1-2ubuntu2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-2ubuntu2) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../048-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../049-libxft2_2.3.3-0ubuntu1_armhf.deb ... Unpacking libxft2:armhf (2.3.3-0ubuntu1) ... Selecting previously unselected package x11-common. Preparing to unpack .../050-x11-common_1%3a7.7+19ubuntu14_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu14) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../051-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../052-libtk8.6_8.6.10-1_armhf.deb ... Unpacking libtk8.6:armhf (8.6.10-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../053-tk8.6-blt2.5_2.5.3+dfsg-4_armhf.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4) ... Selecting previously unselected package blt. Preparing to unpack .../054-blt_2.5.3+dfsg-4_armhf.deb ... Unpacking blt (2.5.3+dfsg-4) ... Selecting previously unselected package cython3. Preparing to unpack .../055-cython3_0.29.14-0.1ubuntu2_armhf.deb ... Unpacking cython3 (0.29.14-0.1ubuntu2) ... Selecting previously unselected package libtool. Preparing to unpack .../056-libtool_2.4.6-12_all.deb ... Unpacking libtool (2.4.6-12) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../057-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../058-libdebhelper-perl_12.7.3ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.7.3ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../059-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../060-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../061-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../062-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package dwz. Preparing to unpack .../063-dwz_0.13-5_armhf.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../064-libcroco3_0.6.13-1_armhf.deb ... Unpacking libcroco3:armhf (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../065-gettext_0.19.8.1-10_armhf.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../066-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../067-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../068-debhelper_12.7.3ubuntu1_all.deb ... Unpacking debhelper (12.7.3ubuntu1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../069-python3-lib2to3_3.8.0-1_all.deb ... Unpacking python3-lib2to3 (3.8.0-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../070-python3-distutils_3.8.0-1_all.deb ... Unpacking python3-distutils (3.8.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../071-dh-python_4.20191017ubuntu5_all.deb ... Unpacking dh-python (4.20191017ubuntu5) ... Selecting previously unselected package xml-core. Preparing to unpack .../072-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../073-docutils-common_0.16+dfsg-1_all.deb ... Unpacking docutils-common (0.16+dfsg-1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../074-fontconfig_2.13.1-2ubuntu2_armhf.deb ... Unpacking fontconfig (2.13.1-2ubuntu2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../075-fonts-lyx_2.3.4-1_all.deb ... Unpacking fonts-lyx (2.3.4-1) ... Selecting previously unselected package libroken18-heimdal:armhf. Preparing to unpack .../076-libroken18-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libasn1-8-heimdal:armhf. Preparing to unpack .../077-libasn1-8-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../078-libblas3_3.9.0-1_armhf.deb ... Unpacking libblas3:armhf (3.9.0-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../079-libbrotli1_1.0.7-6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.7-6) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../080-libpixman-1-0_0.38.4-0ubuntu1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.38.4-0ubuntu1) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../081-libxcb-render0_1.13.1-5build1_armhf.deb ... Unpacking libxcb-render0:armhf (1.13.1-5build1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../082-libxcb-shm0_1.13.1-5build1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.13.1-5build1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../083-libcairo2_1.16.0-4ubuntu1_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-4ubuntu1) ... Selecting previously unselected package libheimbase1-heimdal:armhf. Preparing to unpack .../084-libheimbase1-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libhcrypto4-heimdal:armhf. Preparing to unpack .../085-libhcrypto4-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libwind0-heimdal:armhf. Preparing to unpack .../086-libwind0-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libhx509-5-heimdal:armhf. Preparing to unpack .../087-libhx509-5-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libkrb5-26-heimdal:armhf. Preparing to unpack .../088-libkrb5-26-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libheimntlm0-heimdal:armhf. Preparing to unpack .../089-libheimntlm0-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libgssapi3-heimdal:armhf. Preparing to unpack .../090-libgssapi3-heimdal_7.7.0+dfsg-1_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../091-libsasl2-modules-db_2.1.27+dfsg-2_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../092-libsasl2-2_2.1.27+dfsg-2_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../093-libldap-common_2.4.49+dfsg-1ubuntu1_all.deb ... Unpacking libldap-common (2.4.49+dfsg-1ubuntu1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../094-libldap-2.4-2_2.4.49+dfsg-1ubuntu1_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.49+dfsg-1ubuntu1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../095-libnghttp2-14_1.40.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.40.0-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../096-librtmp1_2.4+20151223.gitfa8646d.1-2build1_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Selecting previously unselected package libssh-4:armhf. Preparing to unpack .../097-libssh-4_0.9.3-2ubuntu1_armhf.deb ... Unpacking libssh-4:armhf (0.9.3-2ubuntu1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../098-libcurl3-gnutls_7.66.0-1ubuntu1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.66.0-1ubuntu1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../099-libcurl4_7.66.0-1ubuntu1_armhf.deb ... Unpacking libcurl4:armhf (7.66.0-1ubuntu1) ... Selecting previously unselected package libdatrie1:armhf. Preparing to unpack .../100-libdatrie1_0.2.12-3_armhf.deb ... Unpacking libdatrie1:armhf (0.2.12-3) ... Selecting previously unselected package libdeflate0. Preparing to unpack .../101-libdeflate0_1.5-2_armhf.deb ... Unpacking libdeflate0 (1.5-2) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../102-libexpat1-dev_2.2.9-1_armhf.deb ... Unpacking libexpat1-dev:armhf (2.2.9-1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../103-libgfortran5_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgfortran5:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../104-libgraphite2-3_1.3.13-11_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.13-11) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../105-libharfbuzz0b_2.6.4-1ubuntu1_armhf.deb ... Unpacking libharfbuzz0b:armhf (2.6.4-1ubuntu1) ... Selecting previously unselected package libhts3:armhf. Preparing to unpack .../106-libhts3_1.10.2-2ubuntu1_armhf.deb ... Unpacking libhts3:armhf (1.10.2-2ubuntu1) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../107-libice6_2%3a1.0.10-0ubuntu1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-0ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:armhf. Preparing to unpack .../108-libjpeg-turbo8_2.0.3-0ubuntu1_armhf.deb ... Unpacking libjpeg-turbo8:armhf (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../109-libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../110-libjs-jquery_3.3.1~dfsg-3_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../111-libjs-jquery-ui_1.12.1+dfsg-5_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-5) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../112-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../113-libjs-sphinxdoc_1.8.5-5_all.deb ... Unpacking libjs-sphinxdoc (1.8.5-5) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../114-liblapack3_3.9.0-1_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../115-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libthai0:armhf. Preparing to unpack .../116-libthai0_0.1.28-3_armhf.deb ... Unpacking libthai0:armhf (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:armhf. Preparing to unpack .../117-libpango-1.0-0_1.44.7-1ubuntu1_armhf.deb ... Unpacking libpango-1.0-0:armhf (1.44.7-1ubuntu1) ... Selecting previously unselected package libpangoft2-1.0-0:armhf. Preparing to unpack .../118-libpangoft2-1.0-0_1.44.7-1ubuntu1_armhf.deb ... Unpacking libpangoft2-1.0-0:armhf (1.44.7-1ubuntu1) ... Selecting previously unselected package libpangocairo-1.0-0:armhf. Preparing to unpack .../119-libpangocairo-1.0-0_1.44.7-1ubuntu1_armhf.deb ... Unpacking libpangocairo-1.0-0:armhf (1.44.7-1ubuntu1) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../120-libpaper1_1.1.28_armhf.deb ... Unpacking libpaper1:armhf (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../121-libpaper-utils_1.1.28_armhf.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package libpython3.7:armhf. Preparing to unpack .../122-libpython3.7_3.7.6-1ubuntu2_armhf.deb ... Unpacking libpython3.7:armhf (3.7.6-1ubuntu2) ... Selecting previously unselected package libpython3.7-dev:armhf. Preparing to unpack .../123-libpython3.7-dev_3.7.6-1ubuntu2_armhf.deb ... Unpacking libpython3.7-dev:armhf (3.7.6-1ubuntu2) ... Selecting previously unselected package libpython3-dev:armhf. Preparing to unpack .../124-libpython3-dev_3.7.5-1ubuntu1_armhf.deb ... Unpacking libpython3-dev:armhf (3.7.5-1ubuntu1) ... Selecting previously unselected package libpython3.8-stdlib:armhf. Preparing to unpack .../125-libpython3.8-stdlib_3.8.1-2ubuntu3_armhf.deb ... Unpacking libpython3.8-stdlib:armhf (3.8.1-2ubuntu3) ... Selecting previously unselected package libpython3.8:armhf. Preparing to unpack .../126-libpython3.8_3.8.1-2ubuntu3_armhf.deb ... Unpacking libpython3.8:armhf (3.8.1-2ubuntu3) ... Selecting previously unselected package libpython3.8-dev:armhf. Preparing to unpack .../127-libpython3.8-dev_3.8.1-2ubuntu3_armhf.deb ... Unpacking libpython3.8-dev:armhf (3.8.1-2ubuntu3) ... Selecting previously unselected package libpython3-all-dev:armhf. Preparing to unpack .../128-libpython3-all-dev_3.7.5-1ubuntu1_armhf.deb ... Unpacking libpython3-all-dev:armhf (3.7.5-1ubuntu1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../129-libsm6_2%3a1.2.3-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../130-libjbig0_2.1-3.1build1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1build1) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../131-libwebp6_0.6.1-2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../132-libtiff5_4.1.0+git191117-2_armhf.deb ... Unpacking libtiff5:armhf (4.1.0+git191117-2) ... Selecting previously unselected package libxt6:armhf. Preparing to unpack .../133-libxt6_1%3a1.1.5-1_armhf.deb ... Unpacking libxt6:armhf (1:1.1.5-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../134-python-babel-localedata_2.6.0+dfsg.1-1ubuntu1_all.deb ... Unpacking python-babel-localedata (2.6.0+dfsg.1-1ubuntu1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../135-python-matplotlib-data_3.0.2-2ubuntu1_all.deb ... Unpacking python-matplotlib-data (3.0.2-2ubuntu1) ... Selecting previously unselected package python3.8. Preparing to unpack .../136-python3.8_3.8.1-2ubuntu3_armhf.deb ... Unpacking python3.8 (3.8.1-2ubuntu3) ... Selecting previously unselected package python3-all. Preparing to unpack .../137-python3-all_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3-all (3.7.5-1ubuntu1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../138-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu3_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Selecting previously unselected package python3.7-dev. Preparing to unpack .../139-python3.7-dev_3.7.6-1ubuntu2_armhf.deb ... Unpacking python3.7-dev (3.7.6-1ubuntu2) ... Selecting previously unselected package python3-dev. Preparing to unpack .../140-python3-dev_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3-dev (3.7.5-1ubuntu1) ... Selecting previously unselected package python3.8-dev. Preparing to unpack .../141-python3.8-dev_3.8.1-2ubuntu3_armhf.deb ... Unpacking python3.8-dev (3.8.1-2ubuntu3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../142-python3-all-dev_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3-all-dev (3.7.5-1ubuntu1) ... Selecting previously unselected package python3-atomicwrites. Preparing to unpack .../143-python3-atomicwrites_1.1.5-2build1_all.deb ... Unpacking python3-atomicwrites (1.1.5-2build1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../144-python3-attr_19.3.0-1_all.deb ... Unpacking python3-attr (19.3.0-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../145-python3-tz_2019.3-1_all.deb ... Unpacking python3-tz (2019.3-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../146-python3-babel_2.6.0+dfsg.1-1ubuntu1_all.deb ... Unpacking python3-babel (2.6.0+dfsg.1-1ubuntu1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../147-python3-certifi_2019.11.28-1_all.deb ... Unpacking python3-certifi (2019.11.28-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../148-python3-chardet_3.0.4-4build1_all.deb ... Unpacking python3-chardet (3.0.4-4build1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../149-python3-cycler_0.10.0-2_all.deb ... Unpacking python3-cycler (0.10.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../150-python3-dateutil_2.7.3-3ubuntu1_all.deb ... Unpacking python3-dateutil (2.7.3-3ubuntu1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../151-python3-roman_2.0.0-3build1_all.deb ... Unpacking python3-roman (2.0.0-3build1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../152-python3-docutils_0.16+dfsg-1_all.deb ... Unpacking python3-docutils (0.16+dfsg-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../153-python3-idna_2.6-2build1_all.deb ... Unpacking python3-idna (2.6-2build1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../154-python3-imagesize_1.2.0-1_all.deb ... Unpacking python3-imagesize (1.2.0-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../155-python3-more-itertools_4.2.0-1build1_all.deb ... Unpacking python3-more-itertools (4.2.0-1build1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../156-python3-zipp_1.0.0-1_all.deb ... Unpacking python3-zipp (1.0.0-1) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../157-python3-importlib-metadata_1.5.0-1_all.deb ... Unpacking python3-importlib-metadata (1.5.0-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../158-python3-markupsafe_1.1.0-1build1_armhf.deb ... Unpacking python3-markupsafe (1.1.0-1build1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../159-python3-jinja2_2.10-2ubuntu2_all.deb ... Unpacking python3-jinja2 (2.10-2ubuntu2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../160-python3-kiwisolver_1.0.1-2build3_armhf.deb ... Unpacking python3-kiwisolver (1.0.1-2build3) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../161-python3-pyparsing_2.4.6-1_all.deb ... Unpacking python3-pyparsing (2.4.6-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../162-python3-numpy_1%3a1.17.4-5ubuntu2_armhf.deb ... Unpacking python3-numpy (1:1.17.4-5ubuntu2) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../163-python3-matplotlib_3.0.2-2ubuntu1_armhf.deb ... Unpacking python3-matplotlib (3.0.2-2ubuntu1) ... Selecting previously unselected package python3-nose. Preparing to unpack .../164-python3-nose_1.3.7-5_all.deb ... Unpacking python3-nose (1.3.7-5) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../165-sphinx-common_1.8.5-5_all.deb ... Unpacking sphinx-common (1.8.5-5) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../166-python3-alabaster_0.7.8-1build1_all.deb ... Unpacking python3-alabaster (0.7.8-1build1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../167-python3-packaging_20.0-1_all.deb ... Unpacking python3-packaging (20.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../168-python3-pygments_2.3.1+dfsg-1ubuntu2_all.deb ... Unpacking python3-pygments (2.3.1+dfsg-1ubuntu2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../169-python3-urllib3_1.24.1-1ubuntu2_all.deb ... Unpacking python3-urllib3 (1.24.1-1ubuntu2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../170-python3-requests_2.22.0-2build1_all.deb ... Unpacking python3-requests (2.22.0-2build1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../171-python3-sphinx_1.8.5-5_all.deb ... Unpacking python3-sphinx (1.8.5-5) ... Selecting previously unselected package python3-numpydoc. Preparing to unpack .../172-python3-numpydoc_0.7.0-2_all.deb ... Unpacking python3-numpydoc (0.7.0-2) ... Selecting previously unselected package python3-pandas-lib. Preparing to unpack .../173-python3-pandas-lib_0.25.3+dfsg-4_armhf.deb ... Unpacking python3-pandas-lib (0.25.3+dfsg-4) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../174-python3-pandas_0.25.3+dfsg-4_all.deb ... Unpacking python3-pandas (0.25.3+dfsg-4) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../175-python3-pluggy_0.13.0-2_all.deb ... Unpacking python3-pluggy (0.13.0-2) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../176-python3-psutil_5.5.1-1ubuntu2_armhf.deb ... Unpacking python3-psutil (5.5.1-1ubuntu2) ... Selecting previously unselected package python3-py. Preparing to unpack .../177-python3-py_1.8.1-1_all.deb ... Unpacking python3-py (1.8.1-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../178-python3-pysam_0.15.4+ds-1_armhf.deb ... Unpacking python3-pysam (0.15.4+ds-1) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../179-python3-wcwidth_0.1.8+dfsg1-3_all.deb ... Unpacking python3-wcwidth (0.1.8+dfsg1-3) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../180-python3-pytest_4.6.8-1ubuntu1_all.deb ... Unpacking python3-pytest (4.6.8-1ubuntu1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../181-python3-setuptools_44.0.0-1_all.deb ... Unpacking python3-setuptools (44.0.0-1) ... Selecting previously unselected package python3-tk:armhf. Preparing to unpack .../182-python3-tk_3.8.0-1_armhf.deb ... Unpacking python3-tk:armhf (3.8.0-1) ... Selecting previously unselected package zip. Preparing to unpack .../183-zip_3.0-11build1_armhf.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../184-unzip_6.0-25ubuntu1_armhf.deb ... Unpacking unzip (6.0-25ubuntu1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../185-xdg-utils_1.1.3-1ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-1ubuntu2) ... Selecting previously unselected package r-base-core. Preparing to unpack .../186-r-base-core_3.6.2-2_armhf.deb ... Unpacking r-base-core (3.6.2-2) ... Selecting previously unselected package sbuild-build-depends-python-pybedtools-dummy. Preparing to unpack .../187-sbuild-build-depends-python-pybedtools-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libgraphite2-3:armhf (1.3.13-11) ... Setting up libpixman-1-0:armhf (0.38.4-0ubuntu1) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:armhf (1.6-6ubuntu1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up libpython3.8-minimal:armhf (3.8.1-2ubuntu3) ... Setting up mime-support (3.64ubuntu1) ... Setting up libdatrie1:armhf (0.2.12-3) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libyaml-0-2:armhf (0.2.2-1) ... Setting up libglib2.0-0:armhf (2.63.3-3) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.4-1) ... Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (12.7.3ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-6) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:armhf (1.40.0-1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up libdeflate0 (1.5-2) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1ubuntu1) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libicu63:armhf (63.2-2) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1ubuntu1) ... Setting up libkrb5support0:armhf (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.2.9-1) ... Setting up libfreetype6:armhf (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.8-2) ... Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:armhf (1.17-6ubuntu4) ... Setting up libjpeg-turbo8:armhf (2.0.3-0ubuntu1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up libgfortran5:armhf (10-20200211-1ubuntu1) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up python3.8-minimal (3.8.1-2ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.6.4-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up sgml-base (1.29.1) ... Setting up libkrb5-3:armhf (1.17-6ubuntu4) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:armhf (3.8.1-2ubuntu3) ... Setting up python3.8 (3.8.1-2ubuntu3) ... Setting up python-matplotlib-data (3.0.2-2ubuntu1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up bedtools (2.27.1+dfsg-4) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up libpython3.7-stdlib:armhf (3.7.6-1ubuntu2) ... Setting up liblapack3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.13.1-5build1) ... Setting up libpython3.7:armhf (3.7.6-1ubuntu2) ... Setting up libtool (2.4.6-12) ... Setting up libxcb-render0:armhf (1.13.1-5build1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libpython3.7-dev:armhf (3.7.6-1ubuntu2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:armhf (1.13.1-5build1) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libthai0:armhf (0.1.28-3) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libpython3.8:armhf (3.8.1-2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-5) ... Setting up libssh-4:armhf (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:armhf (2:1.6.8-1) ... Setting up libtiff5:armhf (4.1.0+git191117-2) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu2) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libpython3-stdlib:armhf (3.7.5-1ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.6-1ubuntu2) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10) ... Setting up libpython3-dev:armhf (3.7.5-1ubuntu1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libpango-1.0-0:armhf (1.44.7-1ubuntu1) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (1.1.0-1build1) ... Setting up python3.7-dev (3.7.6-1ubuntu2) ... Setting up libcairo2:armhf (1.16.0-4ubuntu1) ... Setting up python3-psutil (5.5.1-1ubuntu2) ... Setting up python3-tz (2019.3-1) ... Setting up python3-atomicwrites (1.1.5-2build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.13.0-1build1) ... Setting up python3-roman (2.0.0-3build1) ... Setting up python3-jinja2 (2.10-2ubuntu2) ... Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... Setting up python3-wcwidth (0.1.8+dfsg1-3) ... Setting up python3-pyparsing (2.4.6-1) ... Setting up python3-certifi (2019.11.28-1) ... Setting up libpython3.8-dev:armhf (3.8.1-2ubuntu3) ... Setting up libpython3-all-dev:armhf (3.7.5-1ubuntu1) ... Setting up sphinx-common (1.8.5-5) ... Setting up python3-cycler (0.10.0-2) ... Setting up python3-idna (2.6-2build1) ... Setting up cython3 (0.29.14-0.1ubuntu2) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up python3-urllib3 (1.24.1-1ubuntu2) ... Setting up python3.8-dev (3.8.1-2ubuntu3) ... Setting up python3-dateutil (2.7.3-3ubuntu1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.44.7-1ubuntu1) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up libpangocairo-1.0-0:armhf (1.44.7-1ubuntu1) ... Setting up python3-imagesize (1.2.0-1) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up python3-pkg-resources (44.0.0-1) ... Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu5) ... Setting up python3-more-itertools (4.2.0-1build1) ... Setting up python3-attr (19.3.0-1) ... Setting up libxft2:armhf (2.3.3-0ubuntu1) ... Setting up python3-setuptools (44.0.0-1) ... Setting up python3-py (1.8.1-1) ... Setting up python3-babel (2.6.0+dfsg.1-1ubuntu1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1build1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:armhf (8.6.10-1) ... Setting up python3-all (3.7.5-1ubuntu1) ... Setting up python3-yaml (5.3-1ubuntu2) ... Setting up python3-zipp (1.0.0-1) ... Setting up python3-nose (1.3.7-5) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up python3-packaging (20.0-1) ... Setting up python3-chardet (3.0.4-4build1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up python3-dev (3.7.5-1ubuntu1) ... Setting up python3-requests (2.22.0-2build1) ... Setting up python3-kiwisolver (1.0.1-2build3) ... Setting up python3-numpy (1:1.17.4-5ubuntu2) ... Setting up python3-all-dev (3.7.5-1ubuntu1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.0.2-2ubuntu1) ... /usr/lib/python3/dist-packages/matplotlib/backends/qt_editor/figureoptions.py:220: SyntaxWarning: "is not" with a literal. Did you mean "!="? if marker is not 'none': /usr/lib/python3/dist-packages/matplotlib/pyplot.py:2201: SyntaxWarning: "is" with a literal. Did you mean "=="? if fignum is False or fignum is 0: Setting up python3-importlib-metadata (1.5.0-1) ... Setting up blt (2.5.3+dfsg-4) ... Setting up python3-pandas-lib (0.25.3+dfsg-4) ... Setting up libldap-2.4-2:armhf (2.4.49+dfsg-1ubuntu1) ... Setting up python3-tk:armhf (3.8.0-1) ... Setting up libcurl3-gnutls:armhf (7.66.0-1ubuntu1) ... Setting up python3-pandas (0.25.3+dfsg-4) ... /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 Setting up python3-pluggy (0.13.0-2) ... Setting up libcurl4:armhf (7.66.0-1ubuntu1) ... Setting up libhts3:armhf (1.10.2-2ubuntu1) ... Setting up python3-pysam (0.15.4+ds-1) ... Setting up python3-pytest (4.6.8-1ubuntu1) ... Setting up r-base-core (3.6.2-2) ... Creating config file /etc/R/Renviron with new version Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.3ubuntu1) ... Processing triggers for systemd (244.1-0ubuntu3) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for sgml-base (1.29.1) ... Setting up docutils-common (0.16+dfsg-1) ... Processing triggers for sgml-base (1.29.1) ... Setting up python3-docutils (0.16+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.5-5) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-numpydoc (0.7.0-2) ... Setting up sbuild-build-depends-python-pybedtools-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-10_10-20200211-1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc-10_10-20200211-1ubuntu1 gcc-9_9.2.1-28ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-10-dev_10-20200211-1ubuntu1 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 linux-libc-dev_5.4.0-12.15 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.9 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 bedtools_2.27.1+dfsg-4 binutils_2.34-1ubuntu1 binutils-arm-linux-gnueabihf_2.34-1ubuntu1 binutils-common_2.34-1ubuntu1 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu5 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:10-1ubuntu1 cpp-10_10-20200211-1ubuntu1 cpp-9_9.2.1-28ubuntu1 cython3_0.29.14-0.1ubuntu2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu5 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 docutils-common_0.16+dfsg-1 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu3 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu5 file_1:5.38-4 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-lyx_2.3.4-1 g++_4:10-1ubuntu1 g++-10_10-20200211-1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc_4:10-1ubuntu1 gcc-10_10-20200211-1ubuntu1 gcc-10-base_10-20200211-1ubuntu1 gcc-9_9.2.1-28ubuntu1 gcc-9-base_9.2.1-28ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.9 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-28ubuntu1 libasan6_10-20200211-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200211-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.34-1ubuntu1 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu5 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcairo2_1.16.0-4ubuntu1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_10-20200211-1ubuntu1 libcom-err2_1.45.3-4ubuntu3 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-3ubuntu1 libctf-nobfd0_2.34-1ubuntu1 libctf0_2.34-1ubuntu1 libcurl3-gnutls_7.66.0-1ubuntu1 libcurl4_7.66.0-1ubuntu1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.7.3ubuntu1 libdeflate0_1.5-2 libdevmapper1.02.1_2:1.02.155-2ubuntu8 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.3-4ubuntu3 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu5 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.10.1-2 libfribidi0_1.0.8-2 libgcc-10-dev_10-20200211-1ubuntu1 libgcc-9-dev_9.2.1-28ubuntu1 libgcc-s1_10-20200211-1ubuntu1 libgcc1_1:10-20200211-1ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200211-1ubuntu1 libglib2.0-0_2.63.3-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200211-1ubuntu1 libgpg-error0_1.36-7ubuntu1 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1 libharfbuzz0b_2.6.4-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-2ubuntu1 libhx509-5-heimdal_7.7.0+dfsg-1 libice6_2:1.0.10-0ubuntu1 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.8.5-5 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 liblapack3_3.9.0-1 libldap-2.4-2_2.4.49+dfsg-1ubuntu1 libldap-common_2.4.49+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu5 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpango-1.0-0_1.44.7-1ubuntu1 libpangocairo-1.0-0_1.44.7-1ubuntu1 libpangoft2-1.0-0_1.44.7-1ubuntu1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpixman-1-0_0.38.4-0ubuntu1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libpython3-all-dev_3.7.5-1ubuntu1 libpython3-dev_3.7.5-1ubuntu1 libpython3-stdlib_3.7.5-1ubuntu1 libpython3.7_3.7.6-1ubuntu2 libpython3.7-dev_3.7.6-1ubuntu2 libpython3.7-minimal_3.7.6-1ubuntu2 libpython3.7-stdlib_3.7.6-1ubuntu2 libpython3.8_3.8.1-2ubuntu3 libpython3.8-dev_3.8.1-2ubuntu3 libpython3.8-minimal_3.8.1-2ubuntu3 libpython3.8-stdlib_3.8.1-2ubuntu3 libreadline8_8.0-3 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu5 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu3 libssh-4_0.9.3-2ubuntu1 libssl1.1_1.1.1d-2ubuntu3 libstdc++-10-dev_10-20200211-1ubuntu1 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.1-0ubuntu3 libtasn1-6_4.15.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtinfo6_6.1+20191019-1ubuntu1 libtk8.6_8.6.10-1 libtool_2.4.6-12 libubsan1_10-20200211-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.1-0ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu5 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.13.1-5build1 libxcb-shm0_1.13.1-5build1 libxcb1_1.13.1-5build1 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.4+dfsg1-8ubuntu3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libyaml-0-2_0.2.2-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-12.15 lockfile-progs_0.1.18 login_1:4.8-1ubuntu1 logsave_1.45.3-4ubuntu3 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu5 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python-babel-localedata_2.6.0+dfsg.1-1ubuntu1 python-matplotlib-data_3.0.2-2ubuntu1 python3_3.7.5-1ubuntu1 python3-alabaster_0.7.8-1build1 python3-all_3.7.5-1ubuntu1 python3-all-dev_3.7.5-1ubuntu1 python3-atomicwrites_1.1.5-2build1 python3-attr_19.3.0-1 python3-babel_2.6.0+dfsg.1-1ubuntu1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4build1 python3-cycler_0.10.0-2 python3-dateutil_2.7.3-3ubuntu1 python3-dev_3.7.5-1ubuntu1 python3-distutils_3.8.0-1 python3-docutils_0.16+dfsg-1 python3-idna_2.6-2build1 python3-imagesize_1.2.0-1 python3-importlib-metadata_1.5.0-1 python3-jinja2_2.10-2ubuntu2 python3-kiwisolver_1.0.1-2build3 python3-lib2to3_3.8.0-1 python3-markupsafe_1.1.0-1build1 python3-matplotlib_3.0.2-2ubuntu1 python3-minimal_3.7.5-1ubuntu1 python3-more-itertools_4.2.0-1build1 python3-nose_1.3.7-5 python3-numpy_1:1.17.4-5ubuntu2 python3-numpydoc_0.7.0-2 python3-packaging_20.0-1 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-2 python3-psutil_5.5.1-1ubuntu2 python3-py_1.8.1-1 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pyparsing_2.4.6-1 python3-pysam_0.15.4+ds-1 python3-pytest_4.6.8-1ubuntu1 python3-requests_2.22.0-2build1 python3-roman_2.0.0-3build1 python3-setuptools_44.0.0-1 python3-six_1.13.0-1build1 python3-sphinx_1.8.5-5 python3-tk_3.8.0-1 python3-tz_2019.3-1 python3-urllib3_1.24.1-1ubuntu2 python3-wcwidth_0.1.8+dfsg1-3 python3-yaml_5.3-1ubuntu2 python3-zipp_1.0.0-1 python3.7_3.7.6-1ubuntu2 python3.7-dev_3.7.6-1ubuntu2 python3.7-minimal_3.7.6-1ubuntu2 python3.8_3.8.1-2ubuntu3 python3.8-dev_3.8.1-2ubuntu3 python3.8-minimal_3.8.1-2ubuntu3 r-base-core_3.6.2-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pybedtools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 sphinx-common_1.8.5-5 systemd_244.1-0ubuntu3 systemd-sysv_244.1-0ubuntu3 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu5 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-1ubuntu2 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Nov 15 09:56:59 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.8.0-3.dsc dpkg-source: info: extracting python-pybedtools in python-pybedtools-0.8.0 dpkg-source: info: unpacking python-pybedtools_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.8.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying parseDebianVersions.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18432567 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18432567 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18432567 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.8.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm #dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' python3 setup.py cythonize running cythonize Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) dh_auto_build I: pybuild base:217: /usr/bin/python3.8 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/stats.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/logger.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/settings.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/__main__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/paths.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_scripts.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test1.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/__init__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_mpl.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/py_ms_example.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intron_exon_reads.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intersection_matrix.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/peak_pie.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/annotate.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_gchart.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include copying pybedtools/test/data/d.gff -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data copying pybedtools/cbedtools.pyx -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/_Window.pyx -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools copying pybedtools/test/gchart-expected.png -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test copying pybedtools/scripts/pybedtools -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts creating /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/examples copying pybedtools/scripts/examples/pbt_plotting_example.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/examples running build_ext building 'pybedtools.cbedtools' extension creating build creating build/temp.linux-armhf-3.8 creating build/temp.linux-armhf-3.8/pybedtools creating build/temp.linux-armhf-3.8/pybedtools/include arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-3.8/pybedtools/cbedtools.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/pybedtools/cbedtools.o build/temp.linux-armhf-3.8/pybedtools/include/fileType.o build/temp.linux-armhf-3.8/pybedtools/include/bedFile.o build/temp.linux-armhf-3.8/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/cbedtools.cpython-38-arm-linux-gnueabihf.so building 'pybedtools.featurefuncs' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-3.8/pybedtools/featurefuncs.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.8 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.8/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/pybedtools/featurefuncs.o build/temp.linux-armhf-3.8/pybedtools/include/fileType.o build/temp.linux-armhf-3.8/pybedtools/include/bedFile.o build/temp.linux-armhf-3.8/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/featurefuncs.cpython-38-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.8 copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.8 copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.8 copying pybedtools/scripts/annotate.py -> build/scripts-3.8 copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.8 copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.8 copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.8 copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.8 copying pybedtools/scripts/pybedtools -> build/scripts-3.8 changing mode of build/scripts-3.8/venn_gchart.py from 664 to 775 changing mode of build/scripts-3.8/venn_mpl.py from 664 to 775 changing mode of build/scripts-3.8/annotate.py from 644 to 755 changing mode of build/scripts-3.8/peak_pie.py from 664 to 775 changing mode of build/scripts-3.8/intersection_matrix.py from 664 to 775 changing mode of build/scripts-3.8/intron_exon_reads.py from 664 to 775 changing mode of build/scripts-3.8/pbt_plotting_example.py from 644 to 755 changing mode of build/scripts-3.8/pybedtools from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/stats.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/logger.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/settings.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/__main__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/paths.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_scripts.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test1.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/__init__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_mpl.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/py_ms_example.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intron_exon_reads.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intersection_matrix.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/peak_pie.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/annotate.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_gchart.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/test/data/d.gff -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/cbedtools.pyx -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/_Window.pyx -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/test/gchart-expected.png -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/scripts/pybedtools -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts creating /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples copying pybedtools/scripts/examples/pbt_plotting_example.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples running build_ext building 'pybedtools.cbedtools' extension creating build/temp.linux-armhf-3.7 creating build/temp.linux-armhf-3.7/pybedtools creating build/temp.linux-armhf-3.7/pybedtools/include arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-armhf-3.7/pybedtools/cbedtools.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/pybedtools/cbedtools.o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so building 'pybedtools.featurefuncs' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/pybedtools/featurefuncs.o build/temp.linux-armhf-3.7/pybedtools/include/fileType.o build/temp.linux-armhf-3.7/pybedtools/include/bedFile.o build/temp.linux-armhf-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.7 copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.7 copying pybedtools/scripts/annotate.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.7 copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.7 copying pybedtools/scripts/pybedtools -> build/scripts-3.7 changing mode of build/scripts-3.7/venn_gchart.py from 664 to 775 changing mode of build/scripts-3.7/venn_mpl.py from 664 to 775 changing mode of build/scripts-3.7/annotate.py from 644 to 755 changing mode of build/scripts-3.7/peak_pie.py from 664 to 775 changing mode of build/scripts-3.7/intersection_matrix.py from 664 to 775 changing mode of build/scripts-3.7/intron_exon_reads.py from 664 to 775 changing mode of build/scripts-3.7/pbt_plotting_example.py from 644 to 755 changing mode of build/scripts-3.7/pybedtools from 644 to 755 python3 setup.py develop --user running develop running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension creating build/temp.linux-armv7l-3.7 creating build/temp.linux-armv7l-3.7/pybedtools creating build/temp.linux-armv7l-3.7/pybedtools/include arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pybedtools/cbedtools.o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so building 'pybedtools.featurefuncs' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pybedtools/featurefuncs.o build/temp.linux-armv7l-3.7/pybedtools/include/fileType.o build/temp.linux-armv7l-3.7/pybedtools/include/bedFile.o build/temp.linux-armv7l-3.7/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so Creating /<>/fakehome/.local/lib/python3.7/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.8.0 to easy-install.pth file Installing venn_gchart.py script to /<>/fakehome/.local/bin Installing venn_mpl.py script to /<>/fakehome/.local/bin Installing annotate.py script to /<>/fakehome/.local/bin Installing peak_pie.py script to /<>/fakehome/.local/bin Installing intersection_matrix.py script to /<>/fakehome/.local/bin Installing intron_exon_reads.py script to /<>/fakehome/.local/bin Installing pbt_plotting_example.py script to /<>/fakehome/.local/bin Installing pybedtools script to /<>/fakehome/.local/bin Installed /<> Processing dependencies for pybedtools==0.8.0 Searching for six==1.13.0 Best match: six 1.13.0 Adding six 1.13.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.15.4 Best match: pysam 0.15.4 Adding pysam 0.15.4 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.8.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v1.8.5 making output directory... [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<>/docs/source/autodocs/pybedtools.helpers.get_tempdir.rst, /<>/docs/source/autodocs/pybedtools.helpers.set_bedtools_path.rst, /<>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<>/docs/source/autodocs/pybedtools.scripts.annotate.rst, /<>/docs/source/autodocs/pybedtools.scripts.intersection_matrix.rst, /<>/docs/source/autodocs/pybedtools.scripts.intron_exon_reads.rst, /<>/docs/source/autodocs/pybedtools.scripts.py_ms_example.rst, /<>/docs/source/autodocs/pybedtools.scripts.venn_gchart.rst, /<>/docs/source/autodocs/pybedtools.scripts.venn_mpl.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: 163 added, 0 changed, 0 removed reading sources... [ 0%] 3-brief-examples reading sources... [ 1%] FAQs reading sources... [ 1%] autodoc_source reading sources... [ 2%] autodocs/pybedtools.bedtool.BedTool reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits reading sources... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate reading sources... [ 4%] autodocs/pybedtools.bedtool.BedTool.any_hits reading sources... [ 5%] autodocs/pybedtools.bedtool.BedTool.as_intervalfile reading sources... [ 6%] autodocs/pybedtools.bedtool.BedTool.at reading sources... [ 6%] autodocs/pybedtools.bedtool.BedTool.bam_to_bed reading sources... [ 7%] autodocs/pybedtools.bedtool.BedTool.bam_to_fastq reading sources... [ 7%] autodocs/pybedtools.bedtool.BedTool.bed6 reading sources... [ 8%] autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam reading sources... [ 9%] autodocs/pybedtools.bedtool.BedTool.bgzip reading sources... [ 9%] autodocs/pybedtools.bedtool.BedTool.cat reading sources... [ 10%] autodocs/pybedtools.bedtool.BedTool.closest reading sources... [ 11%] autodocs/pybedtools.bedtool.BedTool.cluster reading sources... [ 11%] autodocs/pybedtools.bedtool.BedTool.colormap_normalize reading sources... [ 12%] autodocs/pybedtools.bedtool.BedTool.complement reading sources... [ 12%] autodocs/pybedtools.bedtool.BedTool.count reading sources... [ 13%] autodocs/pybedtools.bedtool.BedTool.count_hits reading sources... [ 14%] autodocs/pybedtools.bedtool.BedTool.coverage reading sources... [ 14%] autodocs/pybedtools.bedtool.BedTool.cut reading sources... [ 15%] autodocs/pybedtools.bedtool.BedTool.each reading sources... [ 15%] autodocs/pybedtools.bedtool.BedTool.expand reading sources... [ 16%] autodocs/pybedtools.bedtool.BedTool.field_count reading sources... [ 17%] autodocs/pybedtools.bedtool.BedTool.file_type reading sources... [ 17%] autodocs/pybedtools.bedtool.BedTool.filter reading sources... [ 18%] autodocs/pybedtools.bedtool.BedTool.flank reading sources... [ 19%] autodocs/pybedtools.bedtool.BedTool.genome_coverage reading sources... [ 19%] autodocs/pybedtools.bedtool.BedTool.groupby reading sources... [ 20%] autodocs/pybedtools.bedtool.BedTool.head reading sources... [ 20%] autodocs/pybedtools.bedtool.BedTool.igv reading sources... [ 21%] autodocs/pybedtools.bedtool.BedTool.intersect reading sources... [ 22%] autodocs/pybedtools.bedtool.BedTool.introns reading sources... [ 22%] autodocs/pybedtools.bedtool.BedTool.jaccard reading sources... [ 23%] autodocs/pybedtools.bedtool.BedTool.liftover reading sources... [ 23%] autodocs/pybedtools.bedtool.BedTool.links reading sources... [ 24%] autodocs/pybedtools.bedtool.BedTool.map reading sources... [ 25%] autodocs/pybedtools.bedtool.BedTool.mask_fasta reading sources... [ 25%] autodocs/pybedtools.bedtool.BedTool.merge reading sources... [ 26%] autodocs/pybedtools.bedtool.BedTool.moveto reading sources... [ 26%] autodocs/pybedtools.bedtool.BedTool.multi_bam_coverage reading sources... [ 27%] autodocs/pybedtools.bedtool.BedTool.multi_intersect reading sources... [ 28%] autodocs/pybedtools.bedtool.BedTool.nucleotide_content reading sources... [ 28%] autodocs/pybedtools.bedtool.BedTool.overlap reading sources... [ 29%] autodocs/pybedtools.bedtool.BedTool.pair_to_bed reading sources... [ 30%] autodocs/pybedtools.bedtool.BedTool.pair_to_pair reading sources... [ 30%] autodocs/pybedtools.bedtool.BedTool.parallel_apply reading sources... [ 31%] autodocs/pybedtools.bedtool.BedTool.print_sequence reading sources... [ 31%] autodocs/pybedtools.bedtool.BedTool.random reading sources... [ 32%] autodocs/pybedtools.bedtool.BedTool.random_jaccard reading sources... [ 33%] autodocs/pybedtools.bedtool.BedTool.random_op reading sources... [ 33%] autodocs/pybedtools.bedtool.BedTool.random_subset reading sources... [ 34%] autodocs/pybedtools.bedtool.BedTool.randomintersection reading sources... [ 34%] autodocs/pybedtools.bedtool.BedTool.randomintersection_bp reading sources... [ 35%] autodocs/pybedtools.bedtool.BedTool.randomstats reading sources... [ 36%] autodocs/pybedtools.bedtool.BedTool.relative_distance reading sources... [ 36%] autodocs/pybedtools.bedtool.BedTool.reldist reading sources... [ 37%] autodocs/pybedtools.bedtool.BedTool.remove_invalid reading sources... [ 38%] autodocs/pybedtools.bedtool.BedTool.save_seqs reading sources... [ 38%] autodocs/pybedtools.bedtool.BedTool.saveas reading sources... [ 39%] autodocs/pybedtools.bedtool.BedTool.seq reading sources... [ 39%] autodocs/pybedtools.bedtool.BedTool.sequence reading sources... [ 40%] autodocs/pybedtools.bedtool.BedTool.set_chromsizes reading sources... [ 41%] autodocs/pybedtools.bedtool.BedTool.shuffle reading sources... [ 41%] autodocs/pybedtools.bedtool.BedTool.slop reading sources... [ 42%] autodocs/pybedtools.bedtool.BedTool.sort reading sources... [ 42%] autodocs/pybedtools.bedtool.BedTool.split reading sources... [ 43%] autodocs/pybedtools.bedtool.BedTool.subtract reading sources... [ 44%] autodocs/pybedtools.bedtool.BedTool.tabix reading sources... [ 44%] autodocs/pybedtools.bedtool.BedTool.tabix_intervals reading sources... [ 45%] autodocs/pybedtools.bedtool.BedTool.tag_bam reading sources... [ 46%] autodocs/pybedtools.bedtool.BedTool.to_bam reading sources... [ 46%] autodocs/pybedtools.bedtool.BedTool.total_coverage reading sources... [ 47%] autodocs/pybedtools.bedtool.BedTool.truncate_to_chrom reading sources... [ 47%] autodocs/pybedtools.bedtool.BedTool.union_bedgraphs reading sources... [ 48%] autodocs/pybedtools.bedtool.BedTool.window reading sources... [ 49%] autodocs/pybedtools.bedtool.BedTool.window_maker reading sources... [ 49%] autodocs/pybedtools.bedtool.BedTool.with_attrs reading sources... [ 50%] autodocs/pybedtools.bedtool.example_bedtool reading sources... [ 50%] autodocs/pybedtools.cbedtools.Interval reading sources... [ 51%] autodocs/pybedtools.cbedtools.create_interval_from_list reading sources... [ 52%] autodocs/pybedtools.contrib.IntersectionMatrix reading sources... [ 52%] autodocs/pybedtools.contrib.bigbed.bigbed reading sources... [ 53%] autodocs/pybedtools.contrib.bigbed.bigbed_to_bed reading sources... [ 53%] autodocs/pybedtools.contrib.bigwig.bam_to_bigwig reading sources... [ 54%] autodocs/pybedtools.contrib.bigwig.bedgraph_to_bigwig reading sources... [ 55%] autodocs/pybedtools.contrib.bigwig.wig_to_bigwig reading sources... [ 55%] autodocs/pybedtools.contrib.long_range_interaction.cis_trans_interactions reading sources... [ 56%] autodocs/pybedtools.contrib.long_range_interaction.tag_bedpe reading sources... [ 57%] autodocs/pybedtools.contrib.plotting.BedToolsDemo reading sources... [ 57%] autodocs/pybedtools.contrib.plotting.ConfiguredBedToolsDemo reading sources... [ 58%] autodocs/pybedtools.contrib.plotting.Track reading sources... [ 58%] autodocs/pybedtools.contrib.plotting.TrackCollection reading sources... [ 59%] autodocs/pybedtools.contrib.plotting.binary_heatmap reading sources... [ 60%] autodocs/pybedtools.contrib.plotting.binary_summary reading sources... [ 60%] autodocs/pybedtools.contrib.venn_maker reading sources... [ 61%] autodocs/pybedtools.contrib.venn_maker.cleaned_intersect reading sources... [ 61%] autodocs/pybedtools.contrib.venn_maker.venn_maker reading sources... [ 62%] autodocs/pybedtools.debug_mode reading sources... [ 63%] autodocs/pybedtools.filenames.example_filename reading sources... [ 63%] autodocs/pybedtools.filenames.list_example_files reading sources... [ 64%] autodocs/pybedtools.helpers.chromsizes reading sources... [ 65%] autodocs/pybedtools.helpers.chromsizes_to_file reading sources... [ 65%] autodocs/pybedtools.helpers.cleanup reading sources... [ 66%] autodocs/pybedtools.helpers.get_chromsizes_from_ucsc reading sources... [ 66%] autodocs/pybedtools.helpers.get_tempdir reading sources... [ 67%] autodocs/pybedtools.helpers.set_bedtools_path reading sources... [ 68%] autodocs/pybedtools.helpers.set_tempdir reading sources... [ 68%] autodocs/pybedtools.parallel.parallel_apply reading sources... [ 69%] autodocs/pybedtools.scripts.annotate reading sources... [ 69%] autodocs/pybedtools.scripts.intersection_matrix reading sources... [ 70%] autodocs/pybedtools.scripts.intron_exon_reads reading sources... [ 71%] autodocs/pybedtools.scripts.py_ms_example reading sources... [ 71%] autodocs/pybedtools.scripts.venn_gchart reading sources... [ 72%] autodocs/pybedtools.scripts.venn_mpl reading sources... [ 73%] changes reading sources... [ 73%] create-a-bedtool-tutorial reading sources... [ 74%] default-arguments reading sources... [ 74%] each reading sources... [ 75%] filtering reading sources... [ 76%] flow-of-commands reading sources... [ 76%] history reading sources... [ 77%] includeme reading sources... [ 77%] index reading sources... [ 78%] intersections reading sources... [ 79%] intervals reading sources... [ 79%] intro reading sources... [ 80%] main reading sources... [ 80%] piping reading sources... [ 81%] pybedtools-dev-history reading sources... [ 82%] pybedtools.featurefuncs.TSS reading sources... [ 82%] pybedtools.featurefuncs.add_color reading sources... [ 83%] pybedtools.featurefuncs.bed2gff reading sources... [ 84%] pybedtools.featurefuncs.bedgraph_scale reading sources... [ 84%] pybedtools.featurefuncs.center reading sources... [ 85%] pybedtools.featurefuncs.extend_fields reading sources... [ 85%] pybedtools.featurefuncs.five_prime reading sources... [ 86%] pybedtools.featurefuncs.gff2bed reading sources... [ 87%] pybedtools.featurefuncs.greater_than reading sources... [ 87%] pybedtools.featurefuncs.less_than reading sources... [ 88%] pybedtools.featurefuncs.midpoint reading sources... [ 88%] pybedtools.featurefuncs.normalized_to_length reading sources... [ 89%] pybedtools.featurefuncs.rename reading sources... [ 90%] pybedtools.featurefuncs.three_prime reading sources... [ 90%] save-results reading sources... [ 91%] scripts reading sources... [ 92%] sh-comparison reading sources... [ 92%] topical-bam reading sources... [ 93%] topical-bam-semantics reading sources... [ 93%] topical-comparisons reading sources... [ 94%] topical-create-a-bedtool reading sources... [ 95%] topical-design-principles reading sources... [ 95%] topical-documentation-contents reading sources... [ 96%] topical-genome reading sources... [ 96%] topical-iterators reading sources... [ 97%] topical-low-level-ops reading sources... [ 98%] topical-random reading sources... [ 98%] topical-saving reading sources... [ 99%] topical-wrapping reading sources... [100%] tutorial-contents looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 0%] 3-brief-examples writing output... [ 1%] FAQs writing output... [ 1%] autodoc_source writing output... [ 2%] autodocs/pybedtools.bedtool.BedTool writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits writing output... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate writing output... [ 4%] autodocs/pybedtools.bedtool.BedTool.any_hits writing output... [ 5%] autodocs/pybedtools.bedtool.BedTool.as_intervalfile writing output... [ 6%] autodocs/pybedtools.bedtool.BedTool.at writing output... [ 6%] autodocs/pybedtools.bedtool.BedTool.bam_to_bed writing output... [ 7%] autodocs/pybedtools.bedtool.BedTool.bam_to_fastq writing output... [ 7%] autodocs/pybedtools.bedtool.BedTool.bed6 writing output... [ 8%] autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam writing output... [ 9%] autodocs/pybedtools.bedtool.BedTool.bgzip writing output... [ 9%] autodocs/pybedtools.bedtool.BedTool.cat writing output... [ 10%] autodocs/pybedtools.bedtool.BedTool.closest writing output... [ 11%] autodocs/pybedtools.bedtool.BedTool.cluster writing output... [ 11%] autodocs/pybedtools.bedtool.BedTool.colormap_normalize writing output... [ 12%] autodocs/pybedtools.bedtool.BedTool.complement writing output... [ 12%] autodocs/pybedtools.bedtool.BedTool.count writing output... [ 13%] autodocs/pybedtools.bedtool.BedTool.count_hits writing output... [ 14%] autodocs/pybedtools.bedtool.BedTool.coverage writing output... [ 14%] autodocs/pybedtools.bedtool.BedTool.cut writing output... [ 15%] autodocs/pybedtools.bedtool.BedTool.each writing output... [ 15%] autodocs/pybedtools.bedtool.BedTool.expand writing output... [ 16%] autodocs/pybedtools.bedtool.BedTool.field_count writing output... [ 17%] autodocs/pybedtools.bedtool.BedTool.file_type writing output... [ 17%] autodocs/pybedtools.bedtool.BedTool.filter writing output... [ 18%] autodocs/pybedtools.bedtool.BedTool.flank writing output... [ 19%] autodocs/pybedtools.bedtool.BedTool.genome_coverage writing output... [ 19%] autodocs/pybedtools.bedtool.BedTool.groupby writing output... [ 20%] autodocs/pybedtools.bedtool.BedTool.head writing output... [ 20%] autodocs/pybedtools.bedtool.BedTool.igv writing output... [ 21%] autodocs/pybedtools.bedtool.BedTool.intersect writing output... [ 22%] autodocs/pybedtools.bedtool.BedTool.introns writing output... [ 22%] autodocs/pybedtools.bedtool.BedTool.jaccard writing output... [ 23%] autodocs/pybedtools.bedtool.BedTool.liftover writing output... [ 23%] autodocs/pybedtools.bedtool.BedTool.links writing output... [ 24%] autodocs/pybedtools.bedtool.BedTool.map writing output... [ 25%] autodocs/pybedtools.bedtool.BedTool.mask_fasta writing output... [ 25%] autodocs/pybedtools.bedtool.BedTool.merge writing output... [ 26%] autodocs/pybedtools.bedtool.BedTool.moveto writing output... [ 26%] autodocs/pybedtools.bedtool.BedTool.multi_bam_coverage writing output... [ 27%] autodocs/pybedtools.bedtool.BedTool.multi_intersect writing output... [ 28%] autodocs/pybedtools.bedtool.BedTool.nucleotide_content writing output... [ 28%] autodocs/pybedtools.bedtool.BedTool.overlap writing output... [ 29%] autodocs/pybedtools.bedtool.BedTool.pair_to_bed writing output... [ 30%] autodocs/pybedtools.bedtool.BedTool.pair_to_pair writing output... [ 30%] autodocs/pybedtools.bedtool.BedTool.parallel_apply writing output... [ 31%] autodocs/pybedtools.bedtool.BedTool.print_sequence writing output... [ 31%] autodocs/pybedtools.bedtool.BedTool.random writing output... [ 32%] autodocs/pybedtools.bedtool.BedTool.random_jaccard writing output... [ 33%] autodocs/pybedtools.bedtool.BedTool.random_op writing output... [ 33%] autodocs/pybedtools.bedtool.BedTool.random_subset writing output... [ 34%] autodocs/pybedtools.bedtool.BedTool.randomintersection writing output... [ 34%] autodocs/pybedtools.bedtool.BedTool.randomintersection_bp writing output... [ 35%] autodocs/pybedtools.bedtool.BedTool.randomstats writing output... [ 36%] autodocs/pybedtools.bedtool.BedTool.relative_distance writing output... [ 36%] autodocs/pybedtools.bedtool.BedTool.reldist writing output... [ 37%] autodocs/pybedtools.bedtool.BedTool.remove_invalid writing output... [ 38%] autodocs/pybedtools.bedtool.BedTool.save_seqs writing output... [ 38%] autodocs/pybedtools.bedtool.BedTool.saveas writing output... [ 39%] autodocs/pybedtools.bedtool.BedTool.seq writing output... [ 39%] autodocs/pybedtools.bedtool.BedTool.sequence writing output... [ 40%] autodocs/pybedtools.bedtool.BedTool.set_chromsizes writing output... [ 41%] autodocs/pybedtools.bedtool.BedTool.shuffle writing output... [ 41%] autodocs/pybedtools.bedtool.BedTool.slop writing output... [ 42%] autodocs/pybedtools.bedtool.BedTool.sort writing output... [ 42%] autodocs/pybedtools.bedtool.BedTool.split writing output... [ 43%] autodocs/pybedtools.bedtool.BedTool.subtract writing output... [ 44%] autodocs/pybedtools.bedtool.BedTool.tabix writing output... [ 44%] autodocs/pybedtools.bedtool.BedTool.tabix_intervals writing output... [ 45%] autodocs/pybedtools.bedtool.BedTool.tag_bam writing output... [ 46%] autodocs/pybedtools.bedtool.BedTool.to_bam writing output... [ 46%] autodocs/pybedtools.bedtool.BedTool.total_coverage writing output... [ 47%] autodocs/pybedtools.bedtool.BedTool.truncate_to_chrom writing output... [ 47%] autodocs/pybedtools.bedtool.BedTool.union_bedgraphs writing output... [ 48%] autodocs/pybedtools.bedtool.BedTool.window writing output... [ 49%] autodocs/pybedtools.bedtool.BedTool.window_maker writing output... [ 49%] autodocs/pybedtools.bedtool.BedTool.with_attrs writing output... [ 50%] autodocs/pybedtools.bedtool.example_bedtool writing output... [ 50%] autodocs/pybedtools.cbedtools.Interval writing output... [ 51%] autodocs/pybedtools.cbedtools.create_interval_from_list writing output... [ 52%] autodocs/pybedtools.contrib.IntersectionMatrix writing output... [ 52%] autodocs/pybedtools.contrib.bigbed.bigbed writing output... [ 53%] autodocs/pybedtools.contrib.bigbed.bigbed_to_bed writing output... [ 53%] autodocs/pybedtools.contrib.bigwig.bam_to_bigwig writing output... [ 54%] autodocs/pybedtools.contrib.bigwig.bedgraph_to_bigwig writing output... [ 55%] autodocs/pybedtools.contrib.bigwig.wig_to_bigwig writing output... [ 55%] autodocs/pybedtools.contrib.long_range_interaction.cis_trans_interactions writing output... [ 56%] autodocs/pybedtools.contrib.long_range_interaction.tag_bedpe writing output... [ 57%] autodocs/pybedtools.contrib.plotting.BedToolsDemo writing output... [ 57%] autodocs/pybedtools.contrib.plotting.ConfiguredBedToolsDemo writing output... [ 58%] autodocs/pybedtools.contrib.plotting.Track writing output... [ 58%] autodocs/pybedtools.contrib.plotting.TrackCollection writing output... [ 59%] autodocs/pybedtools.contrib.plotting.binary_heatmap writing output... [ 60%] autodocs/pybedtools.contrib.plotting.binary_summary writing output... [ 60%] autodocs/pybedtools.contrib.venn_maker writing output... [ 61%] autodocs/pybedtools.contrib.venn_maker.cleaned_intersect writing output... [ 61%] autodocs/pybedtools.contrib.venn_maker.venn_maker writing output... [ 62%] autodocs/pybedtools.debug_mode writing output... [ 63%] autodocs/pybedtools.filenames.example_filename writing output... [ 63%] autodocs/pybedtools.filenames.list_example_files writing output... [ 64%] autodocs/pybedtools.helpers.chromsizes writing output... [ 65%] autodocs/pybedtools.helpers.chromsizes_to_file writing output... [ 65%] autodocs/pybedtools.helpers.cleanup writing output... [ 66%] autodocs/pybedtools.helpers.get_chromsizes_from_ucsc writing output... [ 66%] autodocs/pybedtools.helpers.get_tempdir writing output... [ 67%] autodocs/pybedtools.helpers.set_bedtools_path writing output... [ 68%] autodocs/pybedtools.helpers.set_tempdir writing output... [ 68%] autodocs/pybedtools.parallel.parallel_apply writing output... [ 69%] autodocs/pybedtools.scripts.annotate writing output... [ 69%] autodocs/pybedtools.scripts.intersection_matrix writing output... [ 70%] autodocs/pybedtools.scripts.intron_exon_reads writing output... [ 71%] autodocs/pybedtools.scripts.py_ms_example writing output... [ 71%] autodocs/pybedtools.scripts.venn_gchart writing output... [ 72%] autodocs/pybedtools.scripts.venn_mpl writing output... [ 73%] changes writing output... [ 73%] create-a-bedtool-tutorial writing output... [ 74%] default-arguments writing output... [ 74%] each writing output... [ 75%] filtering writing output... [ 76%] flow-of-commands writing output... [ 76%] history writing output... [ 77%] includeme writing output... [ 77%] index writing output... [ 78%] intersections writing output... [ 79%] intervals writing output... [ 79%] intro writing output... [ 80%] main writing output... [ 80%] piping writing output... [ 81%] pybedtools-dev-history writing output... [ 82%] pybedtools.featurefuncs.TSS writing output... [ 82%] pybedtools.featurefuncs.add_color writing output... [ 83%] pybedtools.featurefuncs.bed2gff writing output... [ 84%] pybedtools.featurefuncs.bedgraph_scale writing output... [ 84%] pybedtools.featurefuncs.center writing output... [ 85%] pybedtools.featurefuncs.extend_fields writing output... [ 85%] pybedtools.featurefuncs.five_prime writing output... [ 86%] pybedtools.featurefuncs.gff2bed writing output... [ 87%] pybedtools.featurefuncs.greater_than writing output... [ 87%] pybedtools.featurefuncs.less_than writing output... [ 88%] pybedtools.featurefuncs.midpoint writing output... [ 88%] pybedtools.featurefuncs.normalized_to_length writing output... [ 89%] pybedtools.featurefuncs.rename writing output... [ 90%] pybedtools.featurefuncs.three_prime writing output... [ 90%] save-results writing output... [ 91%] scripts writing output... [ 92%] sh-comparison writing output... [ 92%] topical-bam writing output... [ 93%] topical-bam-semantics writing output... [ 93%] topical-comparisons writing output... [ 94%] topical-create-a-bedtool writing output... [ 95%] topical-design-principles writing output... [ 95%] topical-documentation-contents writing output... [ 96%] topical-genome writing output... [ 96%] topical-iterators writing output... [ 97%] topical-low-level-ops writing output... [ 98%] topical-random writing output... [ 98%] topical-saving writing output... [ 99%] topical-wrapping writing output... [100%] tutorial-contents /usr/lib/python3/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section Example warn("Unknown section %s" % key) /usr/lib/python3/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section Example warn("Unknown section %s" % key) /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.expand.rst:9: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.groupby.rst:28: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.overlap.rst:20: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.window_maker.rst:16: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i /<>/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i generating indices... genindex py-modindex highlighting module code... [ 7%] pybedtools highlighting module code... [ 15%] pybedtools.bedtool highlighting module code... [ 23%] pybedtools.cbedtools highlighting module code... [ 30%] pybedtools.contrib.bigbed highlighting module code... [ 38%] pybedtools.contrib.bigwig highlighting module code... [ 46%] pybedtools.contrib.intersection_matrix highlighting module code... [ 53%] pybedtools.contrib.long_range_interaction highlighting module code... [ 61%] pybedtools.contrib.plotting highlighting module code... [ 69%] pybedtools.contrib.venn_maker highlighting module code... [ 76%] pybedtools.featurefuncs highlighting module code... [ 84%] pybedtools.filenames highlighting module code... [ 92%] pybedtools.helpers highlighting module code... [100%] pybedtools.parallel writing additional pages... search copying images... [ 50%] images/gchart.png copying images... [100%] images/mpl.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 7 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/<>' dh_auto_test -a -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /<>/debian/python3-pybedtools running install running build running build_py copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /<>/debian/python3-pybedtools creating /<>/debian/python3-pybedtools/usr creating /<>/debian/python3-pybedtools/usr/lib creating /<>/debian/python3-pybedtools/usr/lib/python3.8 creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/featurefuncs.cpython-38-arm-linux-gnueabihf.so -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/genome_registry.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/cbedtools.pxd -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/stats.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/logger.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/settings.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/parallel.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/bigwig.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/plotting.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/contrib/bigbed.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/mpl-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/d.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/reads.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/a.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/exons.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/a.links.html -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/a.igv_script -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/c.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/small.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/v.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/small.fastq -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/test.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/hg19.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/x.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/164.gtf -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/x.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/y.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/m1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_scripts.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test1.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_contrib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/gchart-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/regression_tests.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/tfuncs.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_issues.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_iter.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_len_leak.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_cases.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/__main__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/cbedtools.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/filenames.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/featurefuncs.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/bedtool.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/cbedtools.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/examples copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/examples copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/pybedtools -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/peak_pie.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/annotate.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts creating /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/fileType.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/bedFile.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/gzstream.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/gzstream.h -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/bedFile.h -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/include/fileType.h -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/featurefuncs.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/_Window.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/version.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/paths.py -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.8_pybedtools/build/pybedtools/cbedtools.cpython-38-arm-linux-gnueabihf.so -> /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/stats.py to stats.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/logger.py to logger.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/settings.py to settings.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/parallel.py to parallel.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test1.py to test1.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/__main__.py to __main__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/filenames.py to filenames.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/helpers.py to helpers.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/bedtool.py to bedtool.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/version.py to version.cpython-38.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools/paths.py to paths.cpython-38.pyc running install_egg_info Copying pybedtools.egg-info to /<>/debian/python3-pybedtools/usr/lib/python3.8/dist-packages/pybedtools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/venn_mpl.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/intron_exon_reads.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/pybedtools -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/peak_pie.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/pbt_plotting_example.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/annotate.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.8/venn_gchart.py -> /<>/debian/python3-pybedtools/usr/bin changing mode of /<>/debian/python3-pybedtools/usr/bin/venn_mpl.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/pybedtools to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/peak_pie.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/annotate.py to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/venn_gchart.py to 775 I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-pybedtools running install running build running build_py copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /<>/debian/python3-pybedtools/usr/lib/python3.7 creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/genome_registry.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pxd -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/stats.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/logger.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/settings.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/parallel.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigwig.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/plotting.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigbed.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/mpl-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/reads.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/exons.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.links.html -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.igv_script -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/c.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/v.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.fastq -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg19.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/164.gtf -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/y.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/m1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_scripts.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_contrib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/gchart-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/regression_tests.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tfuncs.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_issues.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_len_leak.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_cases.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/__main__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/filenames.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/bedtool.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/pybedtools -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/peak_pie.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/annotate.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts creating /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.h -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.h -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.h -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/_Window.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/version.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/paths.py -> /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/stats.py to stats.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/logger.py to logger.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/settings.py to settings.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/parallel.py to parallel.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test1.py to test1.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__main__.py to __main__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/filenames.py to filenames.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/helpers.py to helpers.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/bedtool.py to bedtool.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/version.py to version.cpython-37.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/paths.py to paths.cpython-37.pyc running install_egg_info Copying pybedtools.egg-info to /<>/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.7/venn_mpl.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/intron_exon_reads.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/pybedtools -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/peak_pie.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/pbt_plotting_example.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/annotate.py -> /<>/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/venn_gchart.py -> /<>/debian/python3-pybedtools/usr/bin changing mode of /<>/debian/python3-pybedtools/usr/bin/venn_mpl.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/pybedtools to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/peak_pie.py to 775 changing mode of /<>/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/annotate.py to 755 changing mode of /<>/debian/python3-pybedtools/usr/bin/venn_gchart.py to 775 rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression mkdir -p debian/pybedtools-bin/usr/bin mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/ rm -fr debian/python-pybedtools/usr/bin rm -fr debian/python3-pybedtools/usr/bin make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-pybedtools (in debian/python3-pybedtools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pybedtools/DEBIAN/control, package python3-pybedtools, directory debian/python3-pybedtools pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pybedtools ... oo pkgstripfiles: PNG optimization (2/0) for package python3-pybedtools took 22 s dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.0-3_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-pybedtools_0.8.0-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200212-1839 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-pybedtools_0.8.0-3_armhf.changes: ---------------------------------------- Format: 1.8 Date: Thu, 14 Nov 2019 13:16:33 +0100 Source: python-pybedtools Binary: python3-pybedtools Architecture: armhf Version: 0.8.0-3 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work Changes: python-pybedtools (0.8.0-3) unstable; urgency=medium . * Mark the -doc package Multi-Arch: foreign * debhelper-compat 12 * Testsuite: autopkgtest-pkg-python * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/control * Set upstream metadata fields: Repository. * Remove obsolete fields Name from debian/upstream/metadata. * -doc: add ${sphinxdoc:Built-Using} Checksums-Sha1: e6ee25c2d67977e9550cdba03dc13e3cc4ae19a4 10843 python-pybedtools_0.8.0-3_armhf.buildinfo 78e9c83e9b07b33cfbe9088520b8385206888a19 12210828 python3-pybedtools_0.8.0-3_armhf.deb Checksums-Sha256: 18176b0ffa182a3a07350d800e30b1717dba9be5bc7aab4a31b2d7a287ad8e17 10843 python-pybedtools_0.8.0-3_armhf.buildinfo f37b94e89ecbb8c304eb90823c8b1c04ee0fc3181fe18581712ccd360119fb4c 12210828 python3-pybedtools_0.8.0-3_armhf.deb Files: 64d8aae416176afed91ab96a8023f18c 10843 python optional python-pybedtools_0.8.0-3_armhf.buildinfo b2251b43368f8a5b16c187831234e3bd 12210828 python optional python3-pybedtools_0.8.0-3_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-pybedtools_0.8.0-3_armhf.deb ------------------------------------ new debian package, version 2.0. size 12210828 bytes: control archive=4664 bytes. 863 bytes, 18 lines control 13225 bytes, 135 lines md5sums 262 bytes, 12 lines * postinst #!/bin/sh 411 bytes, 12 lines * prerm #!/bin/sh Package: python3-pybedtools Source: python-pybedtools Version: 0.8.0-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 17134 Depends: python3 (<< 3.9), python3 (>= 3.7~), python3-pysam, python3-six, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Suggests: python-pybedtools-doc Section: python Priority: optional Homepage: https://daler.github.io/pybedtools/ Description: Python 3 wrapper around BEDTools for bioinformatics work The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. . This is the Python 3 version. drwxr-xr-x root/root 0 2019-11-14 12:16 ./ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/ -rw-r--r-- root/root 3632 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/not-zip-safe -rw-r--r-- root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/requires.txt -rw-r--r-- root/root 11 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools-0.8.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/ -rw-r--r-- root/root 7588 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/_Window.pyx -rw-r--r-- root/root 4069 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/__init__.py -rw-r--r-- root/root 1170 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/__main__.py -rw-r--r-- root/root 128574 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/bedtool.py -rw-r--r-- root/root 925303 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpp -rw-r--r-- root/root 228588 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-37m-arm-linux-gnueabihf.so -rw-r--r-- root/root 220428 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-38-arm-linux-gnueabihf.so -rw-r--r-- root/root 2653 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pxd -rw-r--r-- root/root 32222 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/cbedtools.pyx drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/contrib/ -rw-r--r-- root/root 156 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/__init__.py -rw-r--r-- root/root 2278 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/bigbed.py -rw-r--r-- root/root 6285 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/contrib/bigwig.py -rw-r--r-- root/root 7534 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/intersection_matrix.py -rw-r--r-- root/root 16488 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py -rw-r--r-- root/root 19649 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/plotting.py -rw-r--r-- root/root 7726 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/contrib/venn_maker.py -rw-r--r-- root/root 435545 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpp -rw-r--r-- root/root 115580 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-37m-arm-linux-gnueabihf.so -rw-r--r-- root/root 119684 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-38-arm-linux-gnueabihf.so -rw-r--r-- root/root 10686 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/featurefuncs.pyx -rw-r--r-- root/root 1356 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/filenames.py -rw-r--r-- root/root 102472 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/genome_registry.py -rw-r--r-- root/root 26101 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/helpers.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/include/ -rw-r--r-- root/root 14207 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/bedFile.cpp -rw-r--r-- root/root 20380 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/bedFile.h -rw-r--r-- root/root 1746 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/fileType.cpp -rw-r--r-- root/root 1076 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/fileType.h -rw-r--r-- root/root 5093 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/gzstream.cpp -rw-r--r-- root/root 4603 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/gzstream.h -rw-r--r-- root/root 1189 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/include/lineFileUtilities.h -rw-r--r-- root/root 324 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/logger.py -rw-r--r-- root/root 7843 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/parallel.py -rw-r--r-- root/root 590 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/paths.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/scripts/ -rw-r--r-- root/root 159 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/__init__.py -rw-r--r-- root/root 4737 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/annotate.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/scripts/examples/ -rw-r--r-- root/root 3182 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py -rw-r--r-- root/root 4966 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/intersection_matrix.py -rw-r--r-- root/root 3737 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/intron_exon_reads.py -rw-r--r-- root/root 5719 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/peak_pie.py -rw-r--r-- root/root 723 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/py_ms_example.py -rw-r--r-- root/root 36 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/pybedtools -rw-r--r-- root/root 4370 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/venn_gchart.py -rw-r--r-- root/root 4952 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/scripts/venn_mpl.py -rw-r--r-- root/root 2233 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/settings.py -rw-r--r-- root/root 818 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/stats.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/ -rw-r--r-- root/root 415 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/__init__.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/ -rw-r--r-- root/root 1501 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/1000genomes-example.vcf -rw-r--r-- root/root 412 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/164.gtf -rw-r--r-- root/root 68290 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -rw-r--r-- root/root 68576 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -rw-r--r-- root/root 51786 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -rw-r--r-- root/root 65175 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -rw-r--r-- root/root 120207 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -rw-r--r-- root/root 118800 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -rw-r--r-- root/root 85595 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -rw-r--r-- root/root 79506 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -rw-r--r-- root/root 0 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/__init__.py -rw-r--r-- root/root 102 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/a.bed -rw-r--r-- root/root 193 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/a.igv_script -rw-r--r-- root/root 995 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/a.links.html -rw-r--r-- root/root 52 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/b.bed -rw-r--r-- root/root 103 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/bedpe.bed -rw-r--r-- root/root 103 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/bedpe2.bed -rw-r--r-- root/root 1139 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/c.gff -rw-r--r-- root/root 228 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/d.gff -rw-r--r-- root/root 1398 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/democonfig.yaml -rw-r--r-- root/root 414983 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -rw-r--r-- root/root 414944 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/dm3-chr2L-5M.gff.gz -rw-r--r-- root/root 138 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff -rw-r--r-- root/root 52 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/expand_test.bed -rw-r--r-- root/root 165 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.1.100.bam -rw-r--r-- root/root 96 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.1.100.bam.bai -rw-r--r-- root/root 188 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.50.200.bam -rw-r--r-- root/root 96 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.50.200.bam.bai -rw-r--r-- root/root 204 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.bam -rw-r--r-- root/root 194 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.bed -rw-r--r-- root/root 734 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff -rw-r--r-- root/root 227 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff.gz -rw-r--r-- root/root 275 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.othersort.bam -rw-r--r-- root/root 203 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.sorted.bam -rw-r--r-- root/root 96 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/gdc.sorted.bam.bai -rw-r--r-- root/root 223374 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff -rw-r--r-- root/root 10 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/hg38-base.bed -rw-r--r-- root/root 35 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/hg38-problem.bed -rw-r--r-- root/root 1069 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/issue_121.bam -rw-r--r-- root/root 39 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/m1.bed -rw-r--r-- root/root 749 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/mm9.bed12 -rw-r--r-- root/root 29 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/multibamcov_test.bed -rw-r--r-- root/root 416 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/reads.bam -rw-r--r-- root/root 36494 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/rmsk.hg18.chr21.small.bed -rw-r--r-- root/root 11207 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -rw-r--r-- root/root 1111 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/small.bam -rw-r--r-- root/root 1038 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/small.fastq -rw-r--r-- root/root 8474377 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/data/snps.bed.gz -rw-r--r-- root/root 18 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/tag_test1.bed -rw-r--r-- root/root 19 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/tag_test2.bed -rw-r--r-- root/root 1842 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/test.fa -rw-r--r-- root/root 18 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/test.fa.fai -rw-r--r-- root/root 74 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/test_bedpe.bed -rw-r--r-- root/root 20 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/test_peaks.bed -rw-r--r-- root/root 49 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/test_tsses.bed -rw-r--r-- root/root 1555 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/v.vcf -rw-r--r-- root/root 100 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/vcf-stderr-test.bed -rw-r--r-- root/root 6165 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/vcf-stderr-test.vcf -rw-r--r-- root/root 4573 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/venn.b.bed -rw-r--r-- root/root 7169 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/venn.c.bed -rw-r--r-- root/root 1932594 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/x.bam -rw-r--r-- root/root 2521633 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/x.bed -rw-r--r-- root/root 2148 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/data/y.bam -rw-r--r-- root/root 6182 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/gchart-expected.png -rw-r--r-- root/root 16006 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/mpl-expected.png -rw-r--r-- root/root 975 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/regression_tests.py -rw-r--r-- root/root 53630 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/test/test1.py -rw-r--r-- root/root 18233 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_cases.yaml -rw-r--r-- root/root 12555 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_cbedtools.py -rw-r--r-- root/root 5829 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_contrib.py -rw-r--r-- root/root 3884 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_gzip_support.py -rw-r--r-- root/root 5442 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_helpers.py -rw-r--r-- root/root 22530 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_issues.py -rw-r--r-- root/root 7425 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_iter.py -rw-r--r-- root/root 1423 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_len_leak.py -rw-r--r-- root/root 623 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_merge215.yaml -rw-r--r-- root/root 584 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_merge227.yaml -rw-r--r-- root/root 5831 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_scripts.py -rw-r--r-- root/root 19015 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_shuffle215.yaml -rw-r--r-- root/root 710 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/test_shuffle227.yaml -rw-r--r-- root/root 490 2018-11-24 17:40 ./usr/lib/python3/dist-packages/pybedtools/test/tfuncs.py -rw-r--r-- root/root 79 2019-11-14 12:16 ./usr/lib/python3/dist-packages/pybedtools/version.py drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/share/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-11-14 12:16 ./usr/share/doc/python3-pybedtools/ -rw-r--r-- root/root 1097 2019-11-14 12:16 ./usr/share/doc/python3-pybedtools/changelog.Debian.gz -rw-r--r-- root/root 3395 2019-11-13 18:15 ./usr/share/doc/python3-pybedtools/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 120896 Build-Time: 376 Distribution: focal Host Architecture: armhf Install-Time: 136 Job: python-pybedtools_0.8.0-3.dsc Machine Architecture: arm64 Package: python-pybedtools Package-Time: 515 Source-Version: 0.8.0-3 Space: 120896 Status: successful Version: 0.8.0-3 -------------------------------------------------------------------------------- Finished at 20200212-1839 Build needed 00:08:35, 120896k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18432567 Scanning for processes to kill in build PACKAGEBUILD-18432567