https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18293063 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-015 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 12:51:24 ntpdate[1852]: adjust time server 10.211.37.1 offset 0.010891 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18293063 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18293063 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18293063 Starting target for build PACKAGEBUILD-18293063 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18293063 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18293063 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18293063 Updating target for build PACKAGEBUILD-18293063 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x Packages [916 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted s390x Packages [1288 B] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8337 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse s390x Packages [119 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.4 MB in 3s (4621 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 91 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.3.0-24.26 [1094 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22-2 [546 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x libcc1-0 s390x 9.2.1-21ubuntu1 [46.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-6ubuntu3 [1468 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-6ubuntu3 [301 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-6ubuntu3 [3328 B] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libgcc1 s390x 1:9.2.1-21ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libgomp1 s390x 9.2.1-21ubuntu1 [83.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libitm1 s390x 9.2.1-21ubuntu1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libatomic1 s390x 9.2.1-21ubuntu1 [8264 B] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libubsan1 s390x 9.2.1-21ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++6 s390x 9.2.1-21ubuntu1 [504 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu2 [60.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu4 [61.5 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu4 [128 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu4 [20.5 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu4 [160 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 3.0-1 [65.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu4 [137 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu4 [93.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu4 [113 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu4 [981 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu2 [6152 B] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 244-3ubuntu1 [9364 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5ubuntu1 [18.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu1 [33.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu5 [37.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 244-3ubuntu1 [71.8 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2 [684 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.2-2ubuntu1 [38.6 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu4 [110 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 244-3ubuntu1 [3325 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 244-3ubuntu1 [239 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.5 [789 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x apt s390x 1.9.5 [1242 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 3.0-1 [9880 B] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 3.0-1 [80.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1ubuntu1 [504 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 4s (14.6 MB/s) (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu3_s390x.deb ... Unpacking libc6-dev:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu3_s390x.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../2-linux-libc-dev_5.3.0-24.26_s390x.deb ... Unpacking linux-libc-dev:s390x (5.3.0-24.26) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:s390x. Preparing to unpack .../3-libisl22_0.22-2_s390x.deb ... Unpacking libisl22:s390x (0.22-2) ... Preparing to unpack .../4-libcc1-0_9.2.1-21ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../5-binutils-s390x-linux-gnu_2.33.1-6ubuntu3_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../6-libbinutils_2.33.1-6ubuntu3_s390x.deb ... Unpacking libbinutils:s390x (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../7-binutils-common_2.33.1-6ubuntu3_s390x.deb ... Unpacking binutils-common:s390x (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../8-binutils_2.33.1-6ubuntu3_s390x.deb ... Unpacking binutils (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../9-gcc-9-base_9.2.1-21ubuntu1_s390x.deb ... Unpacking gcc-9-base:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Setting up gcc-9-base:s390x (9.2.1-21ubuntu1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9.2.1-21ubuntu1_s390x.deb ... Unpacking libgcc1:s390x (1:9.2.1-21ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1:s390x (1:9.2.1-21ubuntu1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../00-libgomp1_9.2.1-21ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../01-libitm1_9.2.1-21ubuntu1_s390x.deb ... Unpacking libitm1:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../02-libatomic1_9.2.1-21ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../03-libasan5_9.2.1-21ubuntu1_s390x.deb ... Unpacking libasan5:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../04-libubsan1_9.2.1-21ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../05-g++-9_9.2.1-21ubuntu1_s390x.deb ... Unpacking g++-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../06-libstdc++-9-dev_9.2.1-21ubuntu1_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../07-libgcc-9-dev_9.2.1-21ubuntu1_s390x.deb ... Unpacking libgcc-9-dev:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../08-gcc-9_9.2.1-21ubuntu1_s390x.deb ... Unpacking gcc-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../09-cpp-9_9.2.1-21ubuntu1_s390x.deb ... Unpacking cpp-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../10-libstdc++6_9.2.1-21ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Setting up libstdc++6:s390x (9.2.1-21ubuntu1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libc6_2.30-0ubuntu3_s390x.deb ... Unpacking libc6:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc6:s390x (2.30-0ubuntu3) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu2_s390x.deb ... Unpacking base-files (11ubuntu2) over (10.2ubuntu7) ... Setting up base-files (11ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_s390x.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_s390x.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu4_s390x.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu4) over (1:2.34-0.1ubuntu2) ... Setting up bsdutils (1:2.34-0.1ubuntu4) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../gzip_1.10-0ubuntu4_s390x.deb ... Unpacking gzip (1.10-0ubuntu4) over (1.10-0ubuntu3) ... Setting up gzip (1.10-0ubuntu4) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../hostname_3.23_s390x.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-bin (6.1+20191019-1ubuntu1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../perl_5.30.0-9_s390x.deb ... Unpacking perl (5.30.0-9) over (5.28.1-6build1) ... Replacing files in old package perl-base (5.28.1-6build1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libperl5.30:s390x. Preparing to unpack .../libperl5.30_5.30.0-9_s390x.deb ... Unpacking libperl5.30:s390x (5.30.0-9) ... Preparing to unpack .../perl-base_5.30.0-9_s390x.deb ... Unpacking perl-base (5.30.0-9) over (5.28.1-6build1) ... Setting up perl-base (5.30.0-9) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-2_s390x.deb ... Unpacking bzip2 (1.0.8-2) over (1.0.6-9.2) ... Preparing to unpack .../libbz2-1.0_1.0.8-2_s390x.deb ... Unpacking libbz2-1.0:s390x (1.0.8-2) over (1.0.6-9.2) ... Setting up libbz2-1.0:s390x (1.0.8-2) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1ubuntu4_s390x.deb ... Unpacking libblkid1:s390x (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up libblkid1:s390x (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu4_s390x.deb ... Unpacking libuuid1:s390x (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up libuuid1:s390x (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1ubuntu4_s390x.deb ... Unpacking libfdisk1:s390x (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up libfdisk1:s390x (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-7_s390x.deb ... Unpacking libpcre2-8-0:s390x (10.34-7) over (10.32-5) ... Setting up libpcre2-8-0:s390x (10.34-7) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1_s390x.deb ... Unpacking libselinux1:s390x (3.0-1) over (2.9-2) ... Setting up libselinux1:s390x (3.0-1) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1ubuntu4_s390x.deb ... Unpacking libmount1:s390x (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up libmount1:s390x (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libncurses6_6.1+20191019-1ubuntu1_s390x.deb ... Unpacking libncurses6:s390x (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Preparing to unpack .../libtinfo6_6.1+20191019-1ubuntu1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libtinfo6:s390x (6.1+20191019-1ubuntu1) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20191019-1ubuntu1_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up libncursesw6:s390x (6.1+20191019-1ubuntu1) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1ubuntu4_s390x.deb ... Unpacking libsmartcols1:s390x (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up libsmartcols1:s390x (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1ubuntu4_s390x.deb ... Unpacking fdisk (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up fdisk (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1ubuntu4_s390x.deb ... Unpacking util-linux (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Setting up util-linux (2.34-0.1ubuntu4) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.250ubuntu2_s390x.deb ... Unpacking libdebconfclient0:s390x (0.250ubuntu2) over (0.249ubuntu1) ... Setting up libdebconfclient0:s390x (0.250ubuntu2) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.47_s390x.deb ... Unpacking base-passwd (3.5.47) over (3.5.46) ... Setting up base-passwd (3.5.47) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../libc-bin_2.30-0ubuntu3_s390x.deb ... Unpacking libc-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc-bin (2.30-0ubuntu3) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20191019-1ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-base (6.1+20191019-1ubuntu1) ... (Reading database ... 14438 files and directories currently installed.) Preparing to unpack .../lsb-base_11.1.0ubuntu2_all.deb ... Unpacking lsb-base (11.1.0ubuntu2) over (11.0.1ubuntu1) ... Setting up lsb-base (11.1.0ubuntu2) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-1ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.96-1ubuntu1) over (2.95-5ubuntu2) ... Setting up sysvinit-utils (2.96-1ubuntu1) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.2-2_s390x.deb ... Unpacking liblz4-1:s390x (1.9.2-2) over (1.9.1-1) ... Setting up liblz4-1:s390x (1.9.2-2) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../systemd-sysv_244-3ubuntu1_s390x.deb ... Unpacking systemd-sysv (244-3ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libacl1_2.2.53-5ubuntu1_s390x.deb ... Unpacking libacl1:s390x (2.2.53-5ubuntu1) over (2.2.53-4) ... Setting up libacl1:s390x (2.2.53-5ubuntu1) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.13.3-7ubuntu1_s390x.deb ... Unpacking libapparmor1:s390x (2.13.3-7ubuntu1) over (2.13.3-5ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu5_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu5) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.1_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.9-2.1) over (0.7.9-2) ... Setting up libcap-ng0:s390x (0.7.9-2.1) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu5_s390x.deb ... Unpacking libaudit1:s390x (1:2.8.5-2ubuntu5) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:s390x (1:2.8.5-2ubuntu5) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.27-1_s390x.deb ... Unpacking libcap2:s390x (1:2.27-1) over (1:2.25-2) ... Preparing to unpack .../libudev1_244-3ubuntu1_s390x.deb ... Unpacking libudev1:s390x (244-3ubuntu1) over (242-7ubuntu3) ... Setting up libudev1:s390x (244-3ubuntu1) ... (Reading database ... 14437 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.155-2ubuntu7_s390x.deb ... Unpacking libdevmapper1.02.1:s390x (2:1.02.155-2ubuntu7) over (2:1.02.155-2ubuntu6) ... Preparing to unpack .../libjson-c4_0.13.1+dfsg-6_s390x.deb ... Unpacking libjson-c4:s390x (0.13.1+dfsg-6) over (0.13.1+dfsg-4) ... Preparing to unpack .../libcryptsetup12_2%3a2.2.2-1ubuntu1_s390x.deb ... Unpacking libcryptsetup12:s390x (2:2.2.2-1ubuntu1) over (2:2.2.0-3ubuntu1) ... Selecting previously unselected package libnettle7:s390x. Preparing to unpack .../libnettle7_3.5.1+really3.5.1-2_s390x.deb ... Unpacking libnettle7:s390x (3.5.1+really3.5.1-2) ... Setting up libnettle7:s390x (3.5.1+really3.5.1-2) ... Selecting previously unselected package libhogweed5:s390x. (Reading database ... 14444 files and directories currently installed.) Preparing to unpack .../libhogweed5_3.5.1+really3.5.1-2_s390x.deb ... Unpacking libhogweed5:s390x (3.5.1+really3.5.1-2) ... Setting up libhogweed5:s390x (3.5.1+really3.5.1-2) ... (Reading database ... 14447 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.18.1-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.18.1-2) over (0.23.17-2) ... Setting up libp11-kit0:s390x (0.23.18.1-2) ... (Reading database ... 14447 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.15.0-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.15.0-2) over (4.14-3) ... Setting up libtasn1-6:s390x (4.15.0-2) ... (Reading database ... 14447 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.11.1-2_s390x.deb ... Unpacking libgnutls30:s390x (3.6.11.1-2) over (3.6.9-5ubuntu1) ... Setting up libgnutls30:s390x (3.6.11.1-2) ... (Reading database ... 14446 files and directories currently installed.) Preparing to unpack .../libkmod2_26-3ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (26-3ubuntu1) over (26-1ubuntu1) ... Preparing to unpack .../libpam0g_1.3.1-5ubuntu4_s390x.deb ... Unpacking libpam0g:s390x (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam0g:s390x (1.3.1-5ubuntu4) ... (Reading database ... 14446 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.2-2ubuntu1_s390x.deb ... Unpacking libseccomp2:s390x (2.4.2-2ubuntu1) over (2.4.1-0ubuntu0.19.10.3) ... Setting up libseccomp2:s390x (2.4.2-2ubuntu1) ... (Reading database ... 14446 files and directories currently installed.) Preparing to unpack .../mount_2.34-0.1ubuntu4_s390x.deb ... Unpacking mount (2.34-0.1ubuntu4) over (2.34-0.1ubuntu2) ... Preparing to unpack .../systemd_244-3ubuntu1_s390x.deb ... Unpacking systemd (244-3ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libsystemd0_244-3ubuntu1_s390x.deb ... Unpacking libsystemd0:s390x (244-3ubuntu1) over (242-7ubuntu3) ... Setting up libsystemd0:s390x (244-3ubuntu1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.4+dfsg-1_s390x.deb ... Unpacking libzstd1:s390x (1.4.4+dfsg-1) over (1.4.3+dfsg-1) ... Setting up libzstd1:s390x (1.4.4+dfsg-1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.90_1.9.5_s390x.deb ... Unpacking libapt-pkg5.90:s390x (1.9.5) over (1.9.4) ... Setting up libapt-pkg5.90:s390x (1.9.5) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-3ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.8.5-3ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:s390x (1.8.5-3ubuntu1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.17-3ubuntu1_s390x.deb ... Unpacking gpgv (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Setting up gpgv (2.2.17-3ubuntu1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../archives/apt_1.9.5_s390x.deb ... Unpacking apt (1.9.5) over (1.9.4) ... Setting up apt (1.9.5) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu4_s390x.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules-bin (1.3.1-5ubuntu4) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu4_s390x.deb ... Unpacking libpam-modules:s390x (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules:s390x (1.3.1-5ubuntu4) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.48-5_s390x.deb ... Unpacking libattr1:s390x (1:2.4.48-5) over (1:2.4.48-4) ... Setting up libattr1:s390x (1:2.4.48-5) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-runtime (1.3.1-5ubuntu4) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libsepol1_3.0-1_s390x.deb ... Unpacking libsepol1:s390x (3.0-1) over (2.9-2) ... Setting up libsepol1:s390x (3.0-1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.0-1_all.deb ... Unpacking libsemanage-common (3.0-1) over (2.9-3) ... Setting up libsemanage-common (3.0-1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1_s390x.deb ... Unpacking libsemanage1:s390x (3.0-1) over (2.9-3) ... Setting up libsemanage1:s390x (3.0-1) ... (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../0-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) over (0.0.12) ... Preparing to unpack .../1-libsqlite3-0_3.30.1-1ubuntu1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.30.1-1ubuntu1) over (3.29.0-2) ... Preparing to unpack .../2-gpg_2.2.17-3ubuntu1_s390x.deb ... Unpacking gpg (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../3-gpgconf_2.2.17-3ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../4-gpg-agent_2.2.17-3ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.17-3ubuntu1) over (2.2.12-1ubuntu3) ... Preparing to unpack .../5-liblockfile-bin_1.16-1.1_s390x.deb ... Unpacking liblockfile-bin (1.16-1.1) over (1.15-1) ... Preparing to unpack .../6-liblockfile1_1.16-1.1_s390x.deb ... Unpacking liblockfile1:s390x (1.16-1.1) over (1.15-1) ... Setting up libapparmor1:s390x (2.13.3-7ubuntu1) ... Setting up liblockfile-bin (1.16-1.1) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libsqlite3-0:s390x (3.30.1-1ubuntu1) ... Setting up binutils-common:s390x (2.33.1-6ubuntu3) ... Setting up linux-libc-dev:s390x (5.3.0-24.26) ... Setting up libgomp1:s390x (9.2.1-21ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:s390x (1:2.27-1) ... Setting up libasan5:s390x (9.2.1-21ubuntu1) ... Setting up libncurses6:s390x (6.1+20191019-1ubuntu1) ... Setting up libatomic1:s390x (9.2.1-21ubuntu1) ... Setting up libubsan1:s390x (9.2.1-21ubuntu1) ... Setting up libdevmapper1.02.1:s390x (2:1.02.155-2ubuntu7) ... Setting up mount (2.34-0.1ubuntu4) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:s390x (5.30.0-9) ... Setting up libisl22:s390x (0.22-2) ... Setting up liblockfile1:s390x (1.16-1.1) ... Setting up libjson-c4:s390x (0.13.1+dfsg-6) ... Setting up libbinutils:s390x (2.33.1-6ubuntu3) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up libcc1-0:s390x (9.2.1-21ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libitm1:s390x (9.2.1-21ubuntu1) ... Setting up libkmod2:s390x (26-3ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.33.1-6ubuntu3) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils (2.33.1-6ubuntu3) ... Setting up libgcc-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:s390x (2.30-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18293063 s390x focal -c chroot:build-PACKAGEBUILD-18293063 --arch=s390x --dist=focal --nolog falcon_1.8.8-1ubuntu1.dsc Initiating build PACKAGEBUILD-18293063 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-015.buildd +==============================================================================+ | falcon 1.8.8-1ubuntu1 (s390x) 05 Jan 2020 12:51 | +==============================================================================+ Package: falcon Version: 1.8.8-1ubuntu1 Source Version: 1.8.8-1ubuntu1 Distribution: focal Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/falcon-6WLYLp/falcon-1.8.8' with '<>' I: NOTICE: Log filtering will replace 'build/falcon-6WLYLp' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18293063/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- falcon_1.8.8-1ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-C2BiT_/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-C2BiT_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-C2BiT_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-C2BiT_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-C2BiT_/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-C2BiT_/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-C2BiT_/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-python, rsync, python-all-dev, python-setuptools, python-networkx (>= 1.7), python-nose, python-pytest Filtered Build-Depends: debhelper (>= 9), dh-python, rsync, python-all-dev, python-setuptools, python-networkx (>= 1.7), python-nose, python-pytest dpkg-deb: building package 'sbuild-build-depends-falcon-dummy' in '/<>/resolver-X6uFzA/apt_archive/sbuild-build-depends-falcon-dummy.deb'. Ign:1 copy:/<>/resolver-X6uFzA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-X6uFzA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-X6uFzA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-X6uFzA/apt_archive ./ Sources [258 B] Get:5 copy:/<>/resolver-X6uFzA/apt_archive ./ Packages [578 B] Fetched 2955 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install falcon build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpopt0 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-atomicwrites python-attr python-configparser python-contextlib2 python-decorator python-dev python-funcsigs python-importlib-metadata python-minimal python-more-itertools python-networkx python-nose python-packaging python-pathlib2 python-pkg-resources python-pluggy python-py python-pyparsing python-pytest python-scandir python-setuptools python-six python-wcwidth python-zipp python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal rsync Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-attr-doc python-funcsigs-doc python-gdal python-matplotlib python-networkx-doc python-pygraphviz | python-pydot python-scipy python-coverage python-nose-doc subversion python-pytest-xdist python-pyparsing-doc python-mock python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc openssh-client openssh-server Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python-numpy python-yaml The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpopt0 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-atomicwrites python-attr python-configparser python-contextlib2 python-decorator python-dev python-funcsigs python-importlib-metadata python-minimal python-more-itertools python-networkx python-nose python-packaging python-pathlib2 python-pkg-resources python-pluggy python-py python-pyparsing python-pytest python-scandir python-setuptools python-six python-wcwidth python-zipp python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal rsync sbuild-build-depends-falcon-dummy 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 31.7 MB of archives. After this operation, 142 MB of additional disk space will be used. Get:1 copy:/<>/resolver-X6uFzA/apt_archive ./ sbuild-build-depends-falcon-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libpython3.7-minimal s390x 3.7.5-2 [544 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x libexpat1 s390x 2.2.9-1 [69.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x python3.7-minimal s390x 3.7.5-2 [1630 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x python3-minimal s390x 3.7.5-1ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libmpdec2 s390x 2.4.2-2 [80.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x libpython3.7-stdlib s390x 3.7.5-2 [1693 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x python3.7 s390x 3.7.5-2 [301 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x libpython3-stdlib s390x 3.7.5-1ubuntu1 [6844 B] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x python3 s390x 3.7.5-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libuchardet0 s390x 0.0.6-3 [64.5 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x groff-base s390x 1.22.4-4 [824 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libpipeline1 s390x 1.5.1-3 [26.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x man-db s390x 2.9.0-2 [1103 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libpopt0 s390x 1.16-14 [26.7 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x rsync s390x 3.1.3-8 [310 kB] Get:20 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7-minimal s390x 2.7.17-1 [335 kB] Get:21 http://ftpmaster.internal/ubuntu focal/universe s390x python2.7-minimal s390x 2.7.17-1 [1209 kB] Get:22 http://ftpmaster.internal/ubuntu focal/universe s390x python2-minimal s390x 2.7.17-1 [27.8 kB] Get:23 http://ftpmaster.internal/ubuntu focal/universe s390x python-minimal s390x 2.7.17-1 [5996 B] Get:24 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7-stdlib s390x 2.7.17-1 [1833 kB] Get:25 http://ftpmaster.internal/ubuntu focal/universe s390x python2.7 s390x 2.7.17-1 [248 kB] Get:26 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2-stdlib s390x 2.7.17-1 [7400 B] Get:27 http://ftpmaster.internal/ubuntu focal/universe s390x libpython-stdlib s390x 2.7.17-1 [5836 B] Get:28 http://ftpmaster.internal/ubuntu focal/universe s390x python2 s390x 2.7.17-1 [26.5 kB] Get:29 http://ftpmaster.internal/ubuntu focal/universe s390x python s390x 2.7.17-1 [7836 B] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-mgc s390x 1:5.37-6 [210 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x libmagic1 s390x 1:5.37-6 [72.3 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x file s390x 1:5.37-6 [23.0 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libelf1 s390x 0.176-1.1 [41.4 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-0 s390x 2.63.3-1 [1176 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x libicu63 s390x 63.2-2 [8044 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libxml2 s390x 2.9.4+dfsg1-8ubuntu1 [664 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x gettext-base s390x 0.19.8.1-10 [49.1 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x m4 s390x 1.4.18-4 [196 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x autoconf all 2.69-11ubuntu1 [321 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x automake all 1:1.16.1-4ubuntu3 [522 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x autopoint all 0.19.8.1-10 [412 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libtool all 2.4.6-11 [194 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x dh-autoreconf all 19 [16.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x libarchive-zip-perl all 1.67-1 [90.4 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x dwz s390x 0.13-5 [146 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x gettext s390x 0.19.8.1-10 [867 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.7.1ubuntu1 [875 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x python3-distutils all 3.8.0-1 [142 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x dh-python all 4.20191017ubuntu1 [88.5 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libexpat1-dev s390x 2.2.9-1 [112 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libjs-sphinxdoc all 1.8.5-4 [96.7 kB] Get:64 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7 s390x 2.7.17-1 [963 kB] Get:65 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7-dev s390x 2.7.17-1 [2258 kB] Get:66 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2-dev s390x 2.7.17-1 [7456 B] Get:67 http://ftpmaster.internal/ubuntu focal/universe s390x libpython-dev s390x 2.7.17-1 [5892 B] Get:68 http://ftpmaster.internal/ubuntu focal/universe s390x libpython-all-dev s390x 2.7.17-1 [1112 B] Get:69 http://ftpmaster.internal/ubuntu focal/universe s390x python-all s390x 2.7.17-1 [1088 B] Get:70 http://ftpmaster.internal/ubuntu focal/universe s390x python2.7-dev s390x 2.7.17-1 [278 kB] Get:71 http://ftpmaster.internal/ubuntu focal/universe s390x python2-dev s390x 2.7.17-1 [1264 B] Get:72 http://ftpmaster.internal/ubuntu focal/universe s390x python-dev s390x 2.7.17-1 [1244 B] Get:73 http://ftpmaster.internal/ubuntu focal/universe s390x python-all-dev s390x 2.7.17-1 [1112 B] Get:74 http://ftpmaster.internal/ubuntu focal/universe s390x python-atomicwrites all 1.1.5-2build1 [6936 B] Get:75 http://ftpmaster.internal/ubuntu focal/universe s390x python-attr all 18.2.0-1build1 [29.7 kB] Get:76 http://ftpmaster.internal/ubuntu focal/universe s390x python-configparser all 3.5.0b2-3build1 [59.0 kB] Get:77 http://ftpmaster.internal/ubuntu focal/universe s390x python-contextlib2 all 0.5.5-3build1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu focal/universe s390x python-decorator all 4.3.0-1.1build1 [9576 B] Get:79 http://ftpmaster.internal/ubuntu focal/universe s390x python-funcsigs all 1.0.2-4build1 [13.5 kB] Get:80 http://ftpmaster.internal/ubuntu focal/universe s390x python-six all 1.12.0-2build1 [11.6 kB] Get:81 http://ftpmaster.internal/ubuntu focal/universe s390x python-scandir s390x 1.10.0-2 [18.1 kB] Get:82 http://ftpmaster.internal/ubuntu focal/universe s390x python-pathlib2 all 2.3.5-1 [17.6 kB] Get:83 http://ftpmaster.internal/ubuntu focal/universe s390x python-more-itertools all 4.2.0-1build1 [39.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/universe s390x python-zipp all 0.6.0-1 [5172 B] Get:85 http://ftpmaster.internal/ubuntu focal/universe s390x python-importlib-metadata all 0.23-2ubuntu1 [9440 B] Get:86 http://ftpmaster.internal/ubuntu focal/universe s390x python-pkg-resources all 41.4.0-1 [129 kB] Get:87 http://ftpmaster.internal/ubuntu focal/universe s390x python-networkx all 2.2-1ubuntu4 [1002 kB] Get:88 http://ftpmaster.internal/ubuntu focal/universe s390x python-nose all 1.3.7-4 [116 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe s390x python-pyparsing all 2.4.2-1 [58.7 kB] Get:90 http://ftpmaster.internal/ubuntu focal/universe s390x python-packaging all 19.1-2 [21.6 kB] Get:91 http://ftpmaster.internal/ubuntu focal/universe s390x python-pluggy all 0.13.0-2 [18.3 kB] Get:92 http://ftpmaster.internal/ubuntu focal/universe s390x python-py all 1.8.0-1 [65.2 kB] Get:93 http://ftpmaster.internal/ubuntu focal/universe s390x python-wcwidth all 0.1.7+dfsg1-6build1 [15.3 kB] Get:94 http://ftpmaster.internal/ubuntu focal/universe s390x python-pytest all 4.6.6-1ubuntu4 [177 kB] Get:95 http://ftpmaster.internal/ubuntu focal/universe s390x python-setuptools all 41.4.0-1 [333 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.7 MB in 1s (39.8 MB/s) Selecting previously unselected package libpython3.7-minimal:s390x. (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.5-2_s390x.deb ... Unpacking libpython3.7-minimal:s390x (3.7.5-2) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.2.9-1_s390x.deb ... Unpacking libexpat1:s390x (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.5-2_s390x.deb ... Unpacking python3.7-minimal (3.7.5-2) ... Setting up libpython3.7-minimal:s390x (3.7.5-2) ... Setting up libexpat1:s390x (2.2.9-1) ... Setting up python3.7-minimal (3.7.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14689 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_s390x.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64ubuntu1_all.deb ... Unpacking mime-support (3.64ubuntu1) ... Selecting previously unselected package libmpdec2:s390x. Preparing to unpack .../2-libmpdec2_2.4.2-2_s390x.deb ... Unpacking libmpdec2:s390x (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:s390x. Preparing to unpack .../3-libpython3.7-stdlib_3.7.5-2_s390x.deb ... Unpacking libpython3.7-stdlib:s390x (3.7.5-2) ... Selecting previously unselected package python3.7. Preparing to unpack .../4-python3.7_3.7.5-2_s390x.deb ... Unpacking python3.7 (3.7.5-2) ... Selecting previously unselected package libpython3-stdlib:s390x. Preparing to unpack .../5-libpython3-stdlib_3.7.5-1ubuntu1_s390x.deb ... Unpacking libpython3-stdlib:s390x (3.7.5-1ubuntu1) ... Setting up python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 15127 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.5-1ubuntu1_s390x.deb ... Unpacking python3 (3.7.5-1ubuntu1) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../01-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../03-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-4_s390x.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../05-libpipeline1_1.5.1-3_s390x.deb ... Unpacking libpipeline1:s390x (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../06-man-db_2.9.0-2_s390x.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libpopt0:s390x. Preparing to unpack .../07-libpopt0_1.16-14_s390x.deb ... Unpacking libpopt0:s390x (1.16-14) ... Selecting previously unselected package rsync. Preparing to unpack .../08-rsync_3.1.3-8_s390x.deb ... Unpacking rsync (3.1.3-8) ... Selecting previously unselected package libpython2.7-minimal:s390x. Preparing to unpack .../09-libpython2.7-minimal_2.7.17-1_s390x.deb ... Unpacking libpython2.7-minimal:s390x (2.7.17-1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../10-python2.7-minimal_2.7.17-1_s390x.deb ... Unpacking python2.7-minimal (2.7.17-1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../11-python2-minimal_2.7.17-1_s390x.deb ... Unpacking python2-minimal (2.7.17-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../12-python-minimal_2.7.17-1_s390x.deb ... Unpacking python-minimal (2.7.17-1) ... Selecting previously unselected package libpython2.7-stdlib:s390x. Preparing to unpack .../13-libpython2.7-stdlib_2.7.17-1_s390x.deb ... Unpacking libpython2.7-stdlib:s390x (2.7.17-1) ... Selecting previously unselected package python2.7. Preparing to unpack .../14-python2.7_2.7.17-1_s390x.deb ... Unpacking python2.7 (2.7.17-1) ... Selecting previously unselected package libpython2-stdlib:s390x. Preparing to unpack .../15-libpython2-stdlib_2.7.17-1_s390x.deb ... Unpacking libpython2-stdlib:s390x (2.7.17-1) ... Selecting previously unselected package libpython-stdlib:s390x. Preparing to unpack .../16-libpython-stdlib_2.7.17-1_s390x.deb ... Unpacking libpython-stdlib:s390x (2.7.17-1) ... Setting up libpython2.7-minimal:s390x (2.7.17-1) ... Setting up python2.7-minimal (2.7.17-1) ... Setting up python2-minimal (2.7.17-1) ... Selecting previously unselected package python2. (Reading database ... 16541 files and directories currently installed.) Preparing to unpack .../python2_2.7.17-1_s390x.deb ... Unpacking python2 (2.7.17-1) ... Setting up python-minimal (2.7.17-1) ... Selecting previously unselected package python. (Reading database ... 16573 files and directories currently installed.) Preparing to unpack .../00-python_2.7.17-1_s390x.deb ... Unpacking python (2.7.17-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.37-6_s390x.deb ... Unpacking libmagic-mgc (1:5.37-6) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../02-libmagic1_1%3a5.37-6_s390x.deb ... Unpacking libmagic1:s390x (1:5.37-6) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.37-6_s390x.deb ... Unpacking file (1:5.37-6) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../04-libelf1_0.176-1.1_s390x.deb ... Unpacking libelf1:s390x (0.176-1.1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../05-libglib2.0-0_2.63.3-1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.63.3-1) ... Selecting previously unselected package libicu63:s390x. Preparing to unpack .../06-libicu63_63.2-2_s390x.deb ... Unpacking libicu63:s390x (63.2-2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../07-libxml2_2.9.4+dfsg1-8ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-8ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-10_s390x.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../09-libsigsegv2_2.12-2_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-4_s390x.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-11ubuntu1_all.deb ... Unpacking autoconf (2.69-11ubuntu1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.1-4ubuntu3_all.deb ... Unpacking automake (1:1.16.1-4ubuntu3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_12.7.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.7.1ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.6.3-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.6.3-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.13-5_s390x.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../23-libcroco3_0.6.13-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-10_s390x.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_12.7.1ubuntu1_all.deb ... Unpacking debhelper (12.7.1ubuntu1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../28-python3-lib2to3_3.8.0-1_all.deb ... Unpacking python3-lib2to3 (3.8.0-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../29-python3-distutils_3.8.0-1_all.deb ... Unpacking python3-distutils (3.8.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_4.20191017ubuntu1_all.deb ... Unpacking dh-python (4.20191017ubuntu1) ... Selecting previously unselected package libexpat1-dev:s390x. Preparing to unpack .../31-libexpat1-dev_2.2.9-1_s390x.deb ... Unpacking libexpat1-dev:s390x (2.2.9-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../32-libjs-jquery_3.3.1~dfsg-3_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../33-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../34-libjs-sphinxdoc_1.8.5-4_all.deb ... Unpacking libjs-sphinxdoc (1.8.5-4) ... Selecting previously unselected package libpython2.7:s390x. Preparing to unpack .../35-libpython2.7_2.7.17-1_s390x.deb ... Unpacking libpython2.7:s390x (2.7.17-1) ... Selecting previously unselected package libpython2.7-dev:s390x. Preparing to unpack .../36-libpython2.7-dev_2.7.17-1_s390x.deb ... Unpacking libpython2.7-dev:s390x (2.7.17-1) ... Selecting previously unselected package libpython2-dev:s390x. Preparing to unpack .../37-libpython2-dev_2.7.17-1_s390x.deb ... Unpacking libpython2-dev:s390x (2.7.17-1) ... Selecting previously unselected package libpython-dev:s390x. Preparing to unpack .../38-libpython-dev_2.7.17-1_s390x.deb ... Unpacking libpython-dev:s390x (2.7.17-1) ... Selecting previously unselected package libpython-all-dev:s390x. Preparing to unpack .../39-libpython-all-dev_2.7.17-1_s390x.deb ... Unpacking libpython-all-dev:s390x (2.7.17-1) ... Selecting previously unselected package python-all. Preparing to unpack .../40-python-all_2.7.17-1_s390x.deb ... Unpacking python-all (2.7.17-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../41-python2.7-dev_2.7.17-1_s390x.deb ... Unpacking python2.7-dev (2.7.17-1) ... Selecting previously unselected package python2-dev. Preparing to unpack .../42-python2-dev_2.7.17-1_s390x.deb ... Unpacking python2-dev (2.7.17-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../43-python-dev_2.7.17-1_s390x.deb ... Unpacking python-dev (2.7.17-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../44-python-all-dev_2.7.17-1_s390x.deb ... Unpacking python-all-dev (2.7.17-1) ... Selecting previously unselected package python-atomicwrites. Preparing to unpack .../45-python-atomicwrites_1.1.5-2build1_all.deb ... Unpacking python-atomicwrites (1.1.5-2build1) ... Selecting previously unselected package python-attr. Preparing to unpack .../46-python-attr_18.2.0-1build1_all.deb ... Unpacking python-attr (18.2.0-1build1) ... Selecting previously unselected package python-configparser. Preparing to unpack .../47-python-configparser_3.5.0b2-3build1_all.deb ... Unpacking python-configparser (3.5.0b2-3build1) ... Selecting previously unselected package python-contextlib2. Preparing to unpack .../48-python-contextlib2_0.5.5-3build1_all.deb ... Unpacking python-contextlib2 (0.5.5-3build1) ... Selecting previously unselected package python-decorator. Preparing to unpack .../49-python-decorator_4.3.0-1.1build1_all.deb ... Unpacking python-decorator (4.3.0-1.1build1) ... Selecting previously unselected package python-funcsigs. Preparing to unpack .../50-python-funcsigs_1.0.2-4build1_all.deb ... Unpacking python-funcsigs (1.0.2-4build1) ... Selecting previously unselected package python-six. Preparing to unpack .../51-python-six_1.12.0-2build1_all.deb ... Unpacking python-six (1.12.0-2build1) ... Selecting previously unselected package python-scandir. Preparing to unpack .../52-python-scandir_1.10.0-2_s390x.deb ... Unpacking python-scandir (1.10.0-2) ... Selecting previously unselected package python-pathlib2. Preparing to unpack .../53-python-pathlib2_2.3.5-1_all.deb ... Unpacking python-pathlib2 (2.3.5-1) ... Selecting previously unselected package python-more-itertools. Preparing to unpack .../54-python-more-itertools_4.2.0-1build1_all.deb ... Unpacking python-more-itertools (4.2.0-1build1) ... Selecting previously unselected package python-zipp. Preparing to unpack .../55-python-zipp_0.6.0-1_all.deb ... Unpacking python-zipp (0.6.0-1) ... Selecting previously unselected package python-importlib-metadata. Preparing to unpack .../56-python-importlib-metadata_0.23-2ubuntu1_all.deb ... Unpacking python-importlib-metadata (0.23-2ubuntu1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../57-python-pkg-resources_41.4.0-1_all.deb ... Unpacking python-pkg-resources (41.4.0-1) ... Selecting previously unselected package python-networkx. Preparing to unpack .../58-python-networkx_2.2-1ubuntu4_all.deb ... Unpacking python-networkx (2.2-1ubuntu4) ... Selecting previously unselected package python-nose. Preparing to unpack .../59-python-nose_1.3.7-4_all.deb ... Unpacking python-nose (1.3.7-4) ... Selecting previously unselected package python-pyparsing. Preparing to unpack .../60-python-pyparsing_2.4.2-1_all.deb ... Unpacking python-pyparsing (2.4.2-1) ... Selecting previously unselected package python-packaging. Preparing to unpack .../61-python-packaging_19.1-2_all.deb ... Unpacking python-packaging (19.1-2) ... Selecting previously unselected package python-pluggy. Preparing to unpack .../62-python-pluggy_0.13.0-2_all.deb ... Unpacking python-pluggy (0.13.0-2) ... Selecting previously unselected package python-py. Preparing to unpack .../63-python-py_1.8.0-1_all.deb ... Unpacking python-py (1.8.0-1) ... Selecting previously unselected package python-wcwidth. Preparing to unpack .../64-python-wcwidth_0.1.7+dfsg1-6build1_all.deb ... Unpacking python-wcwidth (0.1.7+dfsg1-6build1) ... Selecting previously unselected package python-pytest. Preparing to unpack .../65-python-pytest_4.6.6-1ubuntu4_all.deb ... Unpacking python-pytest (4.6.6-1ubuntu4) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../66-python-setuptools_41.4.0-1_all.deb ... Unpacking python-setuptools (41.4.0-1) ... Selecting previously unselected package sbuild-build-depends-falcon-dummy. Preparing to unpack .../67-sbuild-build-depends-falcon-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-falcon-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.1-3) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:s390x (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libicu63:s390x (63.2-2) ... Setting up libpython2.7-stdlib:s390x (2.7.17-1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:s390x (2.2.9-1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:s390x (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libpopt0:s390x (1.16-14) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpython3.7-stdlib:s390x (3.7.5-2) ... Setting up libpython2.7:s390x (2.7.17-1) ... Setting up libpython2.7-dev:s390x (2.7.17-1) ... Setting up python2.7 (2.7.17-1) ... Setting up libtool (2.4.6-11) ... Setting up libpython2-stdlib:s390x (2.7.17-1) ... Setting up m4 (1.4.18-4) ... Setting up python2 (2.7.17-1) ... Setting up python-atomicwrites (1.1.5-2build1) ... Setting up python-decorator (4.3.0-1.1build1) ... Setting up libpython-stdlib:s390x (2.7.17-1) ... Setting up python-pyparsing (2.4.2-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:s390x (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-4) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up python-funcsigs (1.0.2-4build1) ... Setting up dwz (0.13-5) ... Setting up python-wcwidth (0.1.7+dfsg1-6build1) ... Setting up groff-base (1.22.4-4) ... Setting up libpython2-dev:s390x (2.7.17-1) ... Setting up python-contextlib2 (0.5.5-3build1) ... Setting up python (2.7.17-1) ... Setting up rsync (3.1.3-8) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink /etc/systemd/system/multi-user.target.wants/rsync.service → /lib/systemd/system/rsync.service. Setting up libpython3-stdlib:s390x (3.7.5-1ubuntu1) ... Setting up python2.7-dev (2.7.17-1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.5-2) ... Setting up gettext (0.19.8.1-10) ... Setting up python2-dev (2.7.17-1) ... Setting up python-pkg-resources (41.4.0-1) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up python-all (2.7.17-1) ... Setting up python-attr (18.2.0-1build1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-dev:s390x (2.7.17-1) ... Setting up python-six (1.12.0-2build1) ... Setting up python-more-itertools (4.2.0-1build1) ... Setting up python-networkx (2.2-1ubuntu4) ... Setting up python-configparser (3.5.0b2-3build1) ... Setting up python-setuptools (41.4.0-1) ... Setting up python-scandir (1.10.0-2) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up python-py (1.8.0-1) ... Setting up python-dev (2.7.17-1) ... Setting up python-packaging (19.1-2) ... Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu1) ... Setting up libpython-all-dev:s390x (2.7.17-1) ... Setting up python-nose (1.3.7-4) ... Setting up po-debconf (1.0.21) ... Setting up python-pathlib2 (2.3.5-1) ... Setting up python-zipp (0.6.0-1) ... Setting up python-all-dev (2.7.17-1) ... Setting up python-importlib-metadata (0.23-2ubuntu1) ... Setting up python-pluggy (0.13.0-2) ... Setting up python-pytest (4.6.6-1ubuntu4) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up sbuild-build-depends-falcon-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-s390x-linux-gnu_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu1 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.1-6ubuntu3 libblkid1_2.34-0.1ubuntu4 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-4 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpng16-16_1.6.37-1 libpopt0_1.16-14 libprocps7_2:3.3.15-2ubuntu3 libpython-all-dev_2.7.17-1 libpython-dev_2.7.17-1 libpython-stdlib_2.7.17-1 libpython2-dev_2.7.17-1 libpython2-stdlib_2.7.17-1 libpython2.7_2.7.17-1 libpython2.7-dev_2.7.17-1 libpython2.7-minimal_2.7.17-1 libpython2.7-stdlib_2.7.17-1 libpython3-stdlib_3.7.5-1ubuntu1 libpython3.7-minimal_3.7.5-2 libpython3.7-stdlib_3.7.5-2 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python_2.7.17-1 python-all_2.7.17-1 python-all-dev_2.7.17-1 python-atomicwrites_1.1.5-2build1 python-attr_18.2.0-1build1 python-configparser_3.5.0b2-3build1 python-contextlib2_0.5.5-3build1 python-decorator_4.3.0-1.1build1 python-dev_2.7.17-1 python-funcsigs_1.0.2-4build1 python-importlib-metadata_0.23-2ubuntu1 python-minimal_2.7.17-1 python-more-itertools_4.2.0-1build1 python-networkx_2.2-1ubuntu4 python-nose_1.3.7-4 python-packaging_19.1-2 python-pathlib2_2.3.5-1 python-pkg-resources_41.4.0-1 python-pluggy_0.13.0-2 python-py_1.8.0-1 python-pyparsing_2.4.2-1 python-pytest_4.6.6-1ubuntu4 python-scandir_1.10.0-2 python-setuptools_41.4.0-1 python-six_1.12.0-2build1 python-wcwidth_0.1.7+dfsg1-6build1 python-zipp_0.6.0-1 python2_2.7.17-1 python2-dev_2.7.17-1 python2-minimal_2.7.17-1 python2.7_2.7.17-1 python2.7-dev_2.7.17-1 python2.7-minimal_2.7.17-1 python3_3.7.5-1ubuntu1 python3-distutils_3.8.0-1 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-1ubuntu1 python3.7_3.7.5-2 python3.7-minimal_3.7.5-2 readline-common_8.0-3 rsync_3.1.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-falcon-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 16 18:55:23 2017 UTC gpgv: using RSA key AFCFEC8E669CE1C2 gpgv: issuer "ginggs@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./falcon_1.8.8-1ubuntu1.dsc dpkg-source: info: extracting falcon in falcon-1.8.8 dpkg-source: info: unpacking falcon_1.8.8.orig.tar.xz dpkg-source: info: unpacking falcon_1.8.8-1ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build-system.patch dpkg-source: info: applying versioned-deps.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18293063 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18293063 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18293063 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package falcon dpkg-buildpackage: info: source version 1.8.8-1ubuntu1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f -r /<>/inst make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch --with python2 dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p \ /<>/inst/bin \ /<>/inst/include \ /<>/inst/lib \ /<>/inst/pylib /usr/bin/make all make[2]: Entering directory '/<>' /usr/bin/make -C ./FALCON-make/ all make[3]: Entering directory '/<>/FALCON-make' /usr/bin/make show make[4]: Entering directory '/<>/FALCON-make' mkdir -p /<>/inst/bin which python /usr/bin/python echo "PYTHONUSERBASE=" PYTHONUSERBASE= python -c 'import site; print site.USER_BASE' /sbuild-nonexistent/.local echo "FALCON_PIP_EDIT=--edit" FALCON_PIP_EDIT=--edit echo "FALCON_PIP_USER=" FALCON_PIP_USER= make[4]: Leaving directory '/<>/FALCON-make' /usr/bin/make install make[4]: Entering directory '/<>/FALCON-make' /usr/bin/make -C /<>/DAZZ_DB all make[5]: Entering directory '/<>/DAZZ_DB' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -c -o DB.o DB.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -c -o QV.o QV.c ar -rcv libdazzdb.a DB.o QV.o a - DB.o a - QV.o gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro fasta2DB.c libdazzdb.a -lm -o fasta2DB gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DB2fasta.c libdazzdb.a -lm -o DB2fasta gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBsplit.c libdazzdb.a -lm -o DBsplit gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBdust.c libdazzdb.a -lm -o DBdust gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro Catrack.c libdazzdb.a -lm -o Catrack gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBshow.c libdazzdb.a -lm -o DBshow gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBstats.c libdazzdb.a -lm -o DBstats gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBrm.c libdazzdb.a -lm -o DBrm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro simulator.c libdazzdb.a -lm -o simulator gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro fasta2DAM.c libdazzdb.a -lm -o fasta2DAM gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DAM2fasta.c libdazzdb.a -lm -o DAM2fasta gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro DBdump.c libdazzdb.a -lm -o DBdump gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -Wl,-Bsymbolic-functions -Wl,-z,relro rangen.c libdazzdb.a -lm -o rangen make[5]: Leaving directory '/<>/DAZZ_DB' PREFIX=/<>/inst /usr/bin/make -C /<>/DAZZ_DB install make[5]: Entering directory '/<>/DAZZ_DB' rsync -av fasta2DB DB2fasta DBsplit DBdust Catrack DBshow DBstats DBrm simulator fasta2DAM DAM2fasta DBdump rangen /<>/inst/bin sending incremental file list Catrack DAM2fasta DB2fasta DBdump DBdust DBrm DBshow DBsplit DBstats fasta2DAM fasta2DB rangen simulator sent 4,526,625 bytes received 263 bytes 9,053,776.00 bytes/sec total size is 4,524,744 speedup is 1.00 rsync -av libdazzdb.* /<>/inst/lib sending incremental file list libdazzdb.a sent 524,369 bytes received 35 bytes 1,048,808.00 bytes/sec total size is 524,140 speedup is 1.00 rsync -av /<>/DAZZ_DB/DB.h /<>/DAZZ_DB/QV.h /<>/inst/include sending incremental file list DB.h QV.h sent 25,538 bytes received 54 bytes 51,184.00 bytes/sec total size is 25,385 speedup is 0.99 make[5]: Leaving directory '/<>/DAZZ_DB' /usr/bin/make -C /<>/DALIGNER all make[5]: Entering directory '/<>/DALIGNER' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o filter.o filter.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o align.o align.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o daligner.o daligner.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB daligner.o filter.o align.o -ldazzdb -lm -lpthread -o daligner gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o HPC.daligner.o HPC.daligner.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB HPC.daligner.o align.o -ldazzdb -lm -lpthread -o HPC.daligner gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAsort.o LAsort.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAsort.o align.o -ldazzdb -lm -lpthread -o LAsort gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAmerge.o LAmerge.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAmerge.o align.o -ldazzdb -lm -lpthread -o LAmerge gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAsplit.o LAsplit.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAsplit.o align.o -ldazzdb -lm -lpthread -o LAsplit gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAcat.o LAcat.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAcat.o align.o -ldazzdb -lm -lpthread -o LAcat gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAshow.o LAshow.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAshow.o align.o -ldazzdb -lm -lpthread -o LAshow gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAdump.o LAdump.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAdump.o align.o -ldazzdb -lm -lpthread -o LAdump gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAcheck.o LAcheck.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAcheck.o align.o -ldazzdb -lm -lpthread -o LAcheck gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LAindex.o LAindex.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LAindex.o align.o -ldazzdb -lm -lpthread -o LAindex gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o filter_p.o filter_p.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o daligner_p.o daligner_p.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB daligner_p.o filter_p.o align.o -ldazzdb -lm -lpthread -o daligner_p gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o DBX.o DBX.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LA4Falcon.o LA4Falcon.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LA4Falcon.o DBX.o align.o -ldazzdb -lm -lpthread -o LA4Falcon gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o LA4Ice.o LA4Ice.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB LA4Ice.o align.o -ldazzdb -lm -lpthread -o LA4Ice gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/DALIGNER/../DAZZ_DB -I/include -c -o DB2Falcon.o DB2Falcon.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/DALIGNER/../DAZZ_DB DB2Falcon.o align.o -ldazzdb -lm -lpthread -o DB2Falcon rm daligner_p.o LAshow.o LAcat.o LA4Falcon.o LAdump.o LAsplit.o LAmerge.o LAcheck.o daligner.o HPC.daligner.o LAindex.o DB2Falcon.o LA4Ice.o LAsort.o make[5]: Leaving directory '/<>/DALIGNER' PREFIX=/<>/inst /usr/bin/make -C /<>/DALIGNER install make[5]: Entering directory '/<>/DALIGNER' rsync -av daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex daligner_p LA4Falcon LA4Ice DB2Falcon /<>/inst/bin sending incremental file list DB2Falcon HPC.daligner LA4Falcon LA4Ice LAcat LAcheck LAdump LAindex LAmerge LAshow LAsort LAsplit daligner daligner_p sent 12,569,534 bytes received 282 bytes 25,139,632.00 bytes/sec total size is 12,565,608 speedup is 1.00 make[5]: Leaving directory '/<>/DALIGNER' /usr/bin/make -C /<>/DAMASKER all make[5]: Entering directory '/<>/DAMASKER' gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tandem.o tandem.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o DB.o DB.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o QV.o QV.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o datander.o datander.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro datander.o tandem.o align.o DB.o QV.o -lm -lpthread -o datander gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TANmask.o TANmask.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro TANmask.o align.o DB.o QV.o -lm -lpthread -o TANmask gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o REPmask.o REPmask.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro REPmask.o align.o DB.o QV.o -lm -lpthread -o REPmask gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o HPC.TANmask.o HPC.TANmask.c HPC.TANmask.c: In function ‘main’: HPC.TANmask.c:296:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 296 | for (k = i; k < j; k++) | ^~~ HPC.TANmask.c:308:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 308 | if (DON) | ^~ HPC.TANmask.c:433:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 433 | for (k = 0; k < NTHREADS; k++) | ^~~ HPC.TANmask.c:438:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 438 | fprintf(out,"\n"); | ^~~~~~~ gcc -Wl,-Bsymbolic-functions -Wl,-z,relro HPC.TANmask.o align.o DB.o QV.o -lm -lpthread -o HPC.TANmask gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o HPC.REPmask.o HPC.REPmask.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro HPC.REPmask.o align.o DB.o QV.o -lm -lpthread -o HPC.REPmask rm TANmask.o datander.o HPC.REPmask.o HPC.TANmask.o REPmask.o make[5]: Leaving directory '/<>/DAMASKER' PREFIX=/<>/inst /usr/bin/make -C /<>/DAMASKER install make[5]: Entering directory '/<>/DAMASKER' rsync -av datander TANmask REPmask HPC.TANmask HPC.REPmask /<>/inst/bin sending incremental file list HPC.REPmask HPC.TANmask REPmask TANmask datander sent 933,279 bytes received 111 bytes 1,866,780.00 bytes/sec total size is 932,712 speedup is 1.00 make[5]: Leaving directory '/<>/DAMASKER' /usr/bin/make -C /<>/DEXTRACTOR all make[5]: Entering directory '/<>/DEXTRACTOR' gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dexta.o dexta.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o DB.o DB.c gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o QV.o QV.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro dexta.o DB.o QV.o -lm -lpthread -o dexta gcc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -c -o undexta.o undexta.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro undexta.o DB.o QV.o -lm -lpthread -o undexta make[5]: Leaving directory '/<>/DEXTRACTOR' PREFIX=/<>/inst /usr/bin/make -C /<>/DEXTRACTOR install make[5]: Entering directory '/<>/DEXTRACTOR' rsync -av dexta undexta /<>/inst/bin sending incremental file list dexta undexta sent 205,706 bytes received 54 bytes 411,520.00 bytes/sec total size is 205,496 speedup is 1.00 make[5]: Leaving directory '/<>/DEXTRACTOR' cd /<>/pypeFLOW; python setup.py install --install-lib=/<>/inst/pylib --install-scripts=/<>/inst/bin running install running bdist_egg running egg_info creating pypeflow.egg-info writing requirements to pypeflow.egg-info/requires.txt writing pypeflow.egg-info/PKG-INFO writing top-level names to pypeflow.egg-info/top_level.txt writing dependency_links to pypeflow.egg-info/dependency_links.txt writing entry points to pypeflow.egg-info/entry_points.txt writing manifest file 'pypeflow.egg-info/SOURCES.txt' reading manifest file 'pypeflow.egg-info/SOURCES.txt' writing manifest file 'pypeflow.egg-info/SOURCES.txt' installing library code to build/bdist.linux-s390x/egg running install_lib running build_py creating build creating build/lib.linux-s390x-2.7 creating build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/simple_pwatcher_bridge.py -> build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/__init__.py -> build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/do_task.py -> build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/do_support.py -> build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/util.py -> build/lib.linux-s390x-2.7/pypeflow copying ./pypeflow/pwatcher_workflow.py -> build/lib.linux-s390x-2.7/pypeflow creating build/lib.linux-s390x-2.7/pwatcher copying ./pwatcher/fs_based.py -> build/lib.linux-s390x-2.7/pwatcher copying ./pwatcher/network_based.py -> build/lib.linux-s390x-2.7/pwatcher copying ./pwatcher/__init__.py -> build/lib.linux-s390x-2.7/pwatcher copying ./pwatcher/blocking.py -> build/lib.linux-s390x-2.7/pwatcher creating build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/fs_heartbeat.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/query_server.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/pypeflow_example.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/__init__.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/pwatcher.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/network_heartbeat.py -> build/lib.linux-s390x-2.7/pwatcher/mains copying ./pwatcher/mains/job_start.sh -> build/lib.linux-s390x-2.7/pwatcher/mains creating build/bdist.linux-s390x creating build/bdist.linux-s390x/egg creating build/bdist.linux-s390x/egg/pwatcher creating build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/fs_heartbeat.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/query_server.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/job_start.sh -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/pypeflow_example.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/__init__.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/pwatcher.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/mains/network_heartbeat.py -> build/bdist.linux-s390x/egg/pwatcher/mains copying build/lib.linux-s390x-2.7/pwatcher/fs_based.py -> build/bdist.linux-s390x/egg/pwatcher copying build/lib.linux-s390x-2.7/pwatcher/network_based.py -> build/bdist.linux-s390x/egg/pwatcher copying build/lib.linux-s390x-2.7/pwatcher/__init__.py -> build/bdist.linux-s390x/egg/pwatcher copying build/lib.linux-s390x-2.7/pwatcher/blocking.py -> build/bdist.linux-s390x/egg/pwatcher creating build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/simple_pwatcher_bridge.py -> build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/__init__.py -> build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/do_task.py -> build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/do_support.py -> build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/util.py -> build/bdist.linux-s390x/egg/pypeflow copying build/lib.linux-s390x-2.7/pypeflow/pwatcher_workflow.py -> build/bdist.linux-s390x/egg/pypeflow byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/fs_heartbeat.py to fs_heartbeat.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/query_server.py to query_server.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/pypeflow_example.py to pypeflow_example.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/__init__.py to __init__.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/pwatcher.py to pwatcher.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/mains/network_heartbeat.py to network_heartbeat.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/fs_based.py to fs_based.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/network_based.py to network_based.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/__init__.py to __init__.pyc byte-compiling build/bdist.linux-s390x/egg/pwatcher/blocking.py to blocking.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/simple_pwatcher_bridge.py to simple_pwatcher_bridge.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/__init__.py to __init__.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/do_task.py to do_task.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/do_support.py to do_support.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/util.py to util.pyc byte-compiling build/bdist.linux-s390x/egg/pypeflow/pwatcher_workflow.py to pwatcher_workflow.pyc creating build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/PKG-INFO -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/SOURCES.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/dependency_links.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/entry_points.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/not-zip-safe -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/requires.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying pypeflow.egg-info/top_level.txt -> build/bdist.linux-s390x/egg/EGG-INFO creating dist creating 'dist/pypeflow-1.0.0-py2.7.egg' and adding 'build/bdist.linux-s390x/egg' to it removing 'build/bdist.linux-s390x/egg' (and everything under it) Creating /<>/inst/pylib/site.py Processing pypeflow-1.0.0-py2.7.egg creating /<>/inst/pylib/pypeflow-1.0.0-py2.7.egg Extracting pypeflow-1.0.0-py2.7.egg to /<>/inst/pylib Adding pypeflow 1.0.0 to easy-install.pth file Installing pwatcher-pypeflow-example script to /<>/inst/bin Installing heartbeat-wrapper script to /<>/inst/bin Installing pwatcher-main script to /<>/inst/bin Installed /<>/inst/pylib/pypeflow-1.0.0-py2.7.egg Processing dependencies for pypeflow==1.0.0 Searching for networkx==2.2 Best match: networkx 2.2 Adding networkx 2.2 to easy-install.pth file Using /usr/lib/python2.7/dist-packages Finished processing dependencies for pypeflow==1.0.0 cd /<>/FALCON; python setup.py install --install-lib=/<>/inst/pylib --install-scripts=/<>/inst/bin /bin/sh: 1: git: not found running install running bdist_egg running egg_info creating falcon_kit.egg-info writing requirements to falcon_kit.egg-info/requires.txt writing falcon_kit.egg-info/PKG-INFO writing top-level names to falcon_kit.egg-info/top_level.txt writing dependency_links to falcon_kit.egg-info/dependency_links.txt writing entry points to falcon_kit.egg-info/entry_points.txt writing manifest file 'falcon_kit.egg-info/SOURCES.txt' reading manifest file 'falcon_kit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'falcon_kit.egg-info/SOURCES.txt' installing library code to build/bdist.linux-s390x/egg running install_lib running build_py creating build creating build/lib.linux-s390x-2.7 creating build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/fc_asm_graph.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/bash.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/functional.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/falcon_kit.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/multiproc.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/__init__.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/FastaReader.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/stats_preassembly.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/run_support.py -> build/lib.linux-s390x-2.7/falcon_kit copying falcon_kit/pype_tasks.py -> build/lib.linux-s390x-2.7/falcon_kit creating build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/graph_to_contig.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/actg_coordinate.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/run1.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/graph_to_utgs.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/dedup_a_tigs.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/LAsort.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/tasks.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/get_read_ctg_map.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/ovlp_stats.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/ctg_link_analysis.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/fasta2fasta.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/LAmerge.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/__init__.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/contig_annotate.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/calc_cutoff.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/ovlp_to_graph.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/consensus.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/report_pre_assembly.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/pr_ctg_track.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/ovlp_filter.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/fetch_reads.py -> build/lib.linux-s390x-2.7/falcon_kit/mains copying falcon_kit/mains/rr_ctg_track.py -> build/lib.linux-s390x-2.7/falcon_kit/mains creating build/lib.linux-s390x-2.7/falcon_kit/util copying falcon_kit/util/system.py -> build/lib.linux-s390x-2.7/falcon_kit/util copying falcon_kit/util/io.py -> build/lib.linux-s390x-2.7/falcon_kit/util copying falcon_kit/util/__init__.py -> build/lib.linux-s390x-2.7/falcon_kit/util running build_ext building 'ext_falcon' extension creating build/temp.linux-s390x-2.7 creating build/temp.linux-s390x-2.7/src creating build/temp.linux-s390x-2.7/src/c gcc -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/ext_falcon.c -o build/temp.linux-s390x-2.7/src/c/ext_falcon.o -fPIC -O3 -fno-omit-frame-pointer gcc -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/DW_banded.c -o build/temp.linux-s390x-2.7/src/c/DW_banded.o -fPIC -O3 -fno-omit-frame-pointer gcc -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/kmer_lookup.c -o build/temp.linux-s390x-2.7/src/c/kmer_lookup.o -fPIC -O3 -fno-omit-frame-pointer src/c/kmer_lookup.c: In function ‘find_best_aln_range’: src/c/kmer_lookup.c:347:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 347 | q_coor = calloc( km_ptr->count, sizeof(seq_coor_t) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/c/kmer_lookup.c:56: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ src/c/kmer_lookup.c:348:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 348 | t_coor = calloc( km_ptr->count, sizeof(seq_coor_t) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/c/kmer_lookup.c:56: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/c/falcon.c -o build/temp.linux-s390x-2.7/src/c/falcon.o -fPIC -O3 -fno-omit-frame-pointer s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-OlZxBG/python2.7-2.7.17=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-s390x-2.7/src/c/ext_falcon.o build/temp.linux-s390x-2.7/src/c/DW_banded.o build/temp.linux-s390x-2.7/src/c/kmer_lookup.o build/temp.linux-s390x-2.7/src/c/falcon.o -o build/lib.linux-s390x-2.7/ext_falcon.so creating build/bdist.linux-s390x creating build/bdist.linux-s390x/egg creating build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/fc_asm_graph.py -> build/bdist.linux-s390x/egg/falcon_kit creating build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/graph_to_contig.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/actg_coordinate.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/run1.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/graph_to_utgs.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/dedup_a_tigs.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/LAsort.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/tasks.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/get_read_ctg_map.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/ovlp_stats.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/ctg_link_analysis.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/fasta2fasta.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/LAmerge.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/__init__.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/contig_annotate.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/calc_cutoff.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/ovlp_to_graph.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/consensus.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/report_pre_assembly.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/pr_ctg_track.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/ovlp_filter.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/fetch_reads.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/mains/rr_ctg_track.py -> build/bdist.linux-s390x/egg/falcon_kit/mains copying build/lib.linux-s390x-2.7/falcon_kit/bash.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/functional.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/falcon_kit.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/multiproc.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/__init__.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/FastaReader.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/stats_preassembly.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/run_support.py -> build/bdist.linux-s390x/egg/falcon_kit copying build/lib.linux-s390x-2.7/falcon_kit/pype_tasks.py -> build/bdist.linux-s390x/egg/falcon_kit creating build/bdist.linux-s390x/egg/falcon_kit/util copying build/lib.linux-s390x-2.7/falcon_kit/util/system.py -> build/bdist.linux-s390x/egg/falcon_kit/util copying build/lib.linux-s390x-2.7/falcon_kit/util/io.py -> build/bdist.linux-s390x/egg/falcon_kit/util copying build/lib.linux-s390x-2.7/falcon_kit/util/__init__.py -> build/bdist.linux-s390x/egg/falcon_kit/util copying build/lib.linux-s390x-2.7/ext_falcon.so -> build/bdist.linux-s390x/egg byte-compiling build/bdist.linux-s390x/egg/falcon_kit/fc_asm_graph.py to fc_asm_graph.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/graph_to_contig.py to graph_to_contig.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/actg_coordinate.py to actg_coordinate.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/run1.py to run1.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/graph_to_utgs.py to graph_to_utgs.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/dedup_a_tigs.py to dedup_a_tigs.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/LAsort.py to LAsort.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/tasks.py to tasks.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/get_read_ctg_map.py to get_read_ctg_map.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/ovlp_stats.py to ovlp_stats.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/ctg_link_analysis.py to ctg_link_analysis.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/fasta2fasta.py to fasta2fasta.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/LAmerge.py to LAmerge.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/__init__.py to __init__.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/contig_annotate.py to contig_annotate.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/calc_cutoff.py to calc_cutoff.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/ovlp_to_graph.py to ovlp_to_graph.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/consensus.py to consensus.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/report_pre_assembly.py to report_pre_assembly.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/pr_ctg_track.py to pr_ctg_track.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/ovlp_filter.py to ovlp_filter.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/fetch_reads.py to fetch_reads.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/mains/rr_ctg_track.py to rr_ctg_track.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/bash.py to bash.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/functional.py to functional.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/falcon_kit.py to falcon_kit.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/multiproc.py to multiproc.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/__init__.py to __init__.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/FastaReader.py to FastaReader.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/stats_preassembly.py to stats_preassembly.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/run_support.py to run_support.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/pype_tasks.py to pype_tasks.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/util/system.py to system.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/util/io.py to io.pyc byte-compiling build/bdist.linux-s390x/egg/falcon_kit/util/__init__.py to __init__.pyc creating stub loader for ext_falcon.so byte-compiling build/bdist.linux-s390x/egg/ext_falcon.py to ext_falcon.pyc creating build/bdist.linux-s390x/egg/EGG-INFO installing scripts to build/bdist.linux-s390x/egg/EGG-INFO/scripts running install_scripts running build_scripts creating build/scripts-2.7 copying src/py_scripts/fc_actg_coordinate.py -> build/scripts-2.7 copying src/py_scripts/fc_ctg_link_analysis.py -> build/scripts-2.7 copying src/py_scripts/fc_graph_to_utgs.py -> build/scripts-2.7 copying src/py_scripts/fc_ovlp_stats.py -> build/scripts-2.7 copying src/py_scripts/fc_dedup_a_tigs.py -> build/scripts-2.7 copying src/py_scripts/fc_contig_annotate.py -> build/scripts-2.7 copying src/py_scripts/fc_ovlp_filter.py -> build/scripts-2.7 copying src/py_scripts/fc_graph_to_contig.py -> build/scripts-2.7 copying src/py_scripts/fc_run.py -> build/scripts-2.7 copying src/py_scripts/fc_ovlp_to_graph.py -> build/scripts-2.7 copying src/py_scripts/fc_consensus.py -> build/scripts-2.7 changing mode of build/scripts-2.7/fc_actg_coordinate.py from 644 to 755 changing mode of build/scripts-2.7/fc_ctg_link_analysis.py from 644 to 755 changing mode of build/scripts-2.7/fc_graph_to_utgs.py from 644 to 755 changing mode of build/scripts-2.7/fc_ovlp_stats.py from 644 to 755 changing mode of build/scripts-2.7/fc_dedup_a_tigs.py from 644 to 755 changing mode of build/scripts-2.7/fc_contig_annotate.py from 644 to 755 changing mode of build/scripts-2.7/fc_ovlp_filter.py from 644 to 755 changing mode of build/scripts-2.7/fc_graph_to_contig.py from 644 to 755 changing mode of build/scripts-2.7/fc_run.py from 644 to 755 changing mode of build/scripts-2.7/fc_ovlp_to_graph.py from 644 to 755 changing mode of build/scripts-2.7/fc_consensus.py from 644 to 755 creating build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_actg_coordinate.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_ctg_link_analysis.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_graph_to_utgs.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_ovlp_stats.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_dedup_a_tigs.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_contig_annotate.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_ovlp_filter.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_graph_to_contig.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_run.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_ovlp_to_graph.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts copying build/scripts-2.7/fc_consensus.py -> build/bdist.linux-s390x/egg/EGG-INFO/scripts changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_actg_coordinate.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_ctg_link_analysis.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_graph_to_utgs.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_ovlp_stats.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_dedup_a_tigs.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_contig_annotate.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_ovlp_filter.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_graph_to_contig.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_run.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_ovlp_to_graph.py to 755 changing mode of build/bdist.linux-s390x/egg/EGG-INFO/scripts/fc_consensus.py to 755 copying falcon_kit.egg-info/PKG-INFO -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/SOURCES.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/dependency_links.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/entry_points.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/not-zip-safe -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/requires.txt -> build/bdist.linux-s390x/egg/EGG-INFO copying falcon_kit.egg-info/top_level.txt -> build/bdist.linux-s390x/egg/EGG-INFO writing build/bdist.linux-s390x/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/falcon_kit-0.7-py2.7-linux-s390x.egg' and adding 'build/bdist.linux-s390x/egg' to it removing 'build/bdist.linux-s390x/egg' (and everything under it) Processing falcon_kit-0.7-py2.7-linux-s390x.egg creating /<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg Extracting falcon_kit-0.7-py2.7-linux-s390x.egg to /<>/inst/pylib Adding falcon-kit 0.7 to easy-install.pth file Installing fc_actg_coordinate.py script to /<>/inst/bin Installing fc_ctg_link_analysis.py script to /<>/inst/bin Installing fc_graph_to_utgs.py script to /<>/inst/bin Installing fc_ovlp_stats.py script to /<>/inst/bin Installing fc_dedup_a_tigs.py script to /<>/inst/bin Installing fc_contig_annotate.py script to /<>/inst/bin Installing fc_ovlp_filter.py script to /<>/inst/bin Installing fc_graph_to_contig.py script to /<>/inst/bin Installing fc_run.py script to /<>/inst/bin Installing fc_ovlp_to_graph.py script to /<>/inst/bin Installing fc_consensus.py script to /<>/inst/bin Installing fc_fetch_reads script to /<>/inst/bin Installing fc_pr_ctg_track script to /<>/inst/bin Installing fc_actg_coordinate script to /<>/inst/bin Installing fc_fasta2fasta script to /<>/inst/bin Installing fc_ctg_link_analysis script to /<>/inst/bin Installing fc_ovlp_to_graph script to /<>/inst/bin Installing fc_ovlp_filter script to /<>/inst/bin Installing fc_get_read_ctg_map script to /<>/inst/bin Installing fc_run script to /<>/inst/bin Installing fc_contig_annotate script to /<>/inst/bin Installing fc_graph_to_utgs script to /<>/inst/bin Installing fc_run1 script to /<>/inst/bin Installing fc_ovlp_stats script to /<>/inst/bin Installing fc_consensus script to /<>/inst/bin Installing fc_rr_ctg_track script to /<>/inst/bin Installing fc_calc_cutoff script to /<>/inst/bin Installing falcon-task script to /<>/inst/bin Installing fc_graph_to_contig script to /<>/inst/bin Installing fc_dedup_a_tigs script to /<>/inst/bin Installed /<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg Processing dependencies for falcon-kit==0.7 Searching for networkx==2.2 Best match: networkx 2.2 Adding networkx 2.2 to easy-install.pth file Using /usr/lib/python2.7/dist-packages Finished processing dependencies for falcon-kit==0.7 make[4]: Leaving directory '/<>/FALCON-make' /usr/bin/make check make[4]: Entering directory '/<>/FALCON-make' python -c 'import pypeflow.simple_pwatcher_bridge; print pypeflow.simple_pwatcher_bridge' >/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.pyc'> python -c 'import falcon_kit; print falcon_kit.falcon' >/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/ext_falcon.so', handle 11f1e6e00 at 3ff8c061588> make[4]: Leaving directory '/<>/FALCON-make' make[3]: Leaving directory '/<>/FALCON-make' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' /usr/bin/make -C FALCON test make[2]: Entering directory '/<>/FALCON' python -c 'import falcon_kit; print falcon_kit.falcon' >/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/ext_falcon.so', handle 1349e3ab0 at 3ff831618c8> #pip install --user pytest py.test -v -s --junit-xml=test.basic.xml test/ ============================= test session starts ============================== platform linux2 -- Python 2.7.17, pytest-4.6.6, py-1.8.0, pluggy-0.13.0 -- /usr/bin/python2 cachedir: .pytest_cache rootdir: /<>/FALCON collecting ... collected 34 items test/test_calc_cutoff.py::test_help usage: py.test [-h] [--coverage COVERAGE] genome_size capture Given the result of 'DBstats -u -b1' on stdin, print the lowest read-length required for sufficient coverage of the genome (i.e. 'length_cutoff'). positional arguments: genome_size Estimated number of bases in genome. (haploid?) capture File with captured output of DBstats. (Otherwise, stdin.) optional arguments: -h, --help show this help message and exit --coverage COVERAGE Desired coverage ratio (i.e. over-sampling) (default: 20) This is useful when length_cutoff is not provided but the genome-size can be estimated. The purpose is to *reduce* the amount of data seen by DALIGNER, since otherwise it will miss many alignments when it encounters resource limits. Note: If PBFALCON_ERRFILE is defined (and its directory is writable), we will write errors there in addition to stderr. PASSED test/test_calc_cutoff.py::test_calc_cutoff PASSED test/test_calc_cutoff.py::test_calc_cutoff_err PASSED test/test_calc_cutoff.py::test_calc_cutoff_errfile PASSED test/test_consensus.py::test_help usage: py.test [-h] [--n_core N_CORE] [--min_cov MIN_COV] [--min_cov_aln MIN_COV_ALN] [--max_cov_aln MAX_COV_ALN] [--min_len_aln MIN_LEN_ALN] [--min_n_read MIN_N_READ] [--max_n_read MAX_N_READ] [--trim] [--output_full] [--output_multi] [--min_idt MIN_IDT] [--edge_tolerance EDGE_TOLERANCE] [--trim_size TRIM_SIZE] a simple multi-processor consensus sequence generator optional arguments: -h, --help show this help message and exit --n_core N_CORE number of processes used for generating consensus; 0 for main process only (default: 24) --min_cov MIN_COV minimum coverage to break the consensus (default: 6) --min_cov_aln MIN_COV_ALN minimum coverage of alignment data; a seed read with less than MIN_COV_ALN average depth of coverage will be completely ignored (default: 10) --max_cov_aln MAX_COV_ALN maximum coverage of alignment data; a seed read with more than MAX_COV_ALN average depth of coverage of the longest alignments will be capped, excess shorter alignments will be ignored (default: 0) --min_len_aln MIN_LEN_ALN minimum length of a sequence in an alignment to be used in consensus; any shorter sequence will be completely ignored (default: 0) --min_n_read MIN_N_READ 1 + minimum number of reads used in generating the consensus; a seed read with fewer alignments will be completely ignored (default: 10) --max_n_read MAX_N_READ 1 + maximum number of reads used in generating the consensus (default: 500) --trim trim the input sequence with k-mer spare dynamic programming to find the mapped range (default: False) --output_full output uncorrected regions too (default: False) --output_multi output multi correct regions (default: False) --min_idt MIN_IDT minimum identity of the alignments used for correction (default: 0.7) --edge_tolerance EDGE_TOLERANCE for trimming, the there is unaligned edge leng > edge_tolerance, ignore the read (default: 1000) --trim_size TRIM_SIZE the size for triming both ends from initial sparse aligned region (default: 50) PASSED test/test_functional.py::test_get_daligner_job_descriptions PASSED test/test_functional.py::test_get_daligner_job_descriptions_with_bad_arg PASSED test/test_functional.py::test_get_daligner_job_descriptions_small PASSED test/test_functional.py::test_get_daligner_job_descriptions_se161 PASSED test/test_functional.py::test_get_mjob_data PASSED test/test_functional.py::test_skip_LAcheck PASSED test/test_functional.py::test_first_block_las PASSED test/test_functional.py::test_xform_script_for_preads PASSED test/test_functional.py::test_calc_cutoff_from_reverse_sorted_readlength_counts XFAIL test/test_functional.py::test_get_reverse_sorted_readlength_counts_from_DBstats PASSED test/test_functional.py::test_num2int PASSED test/test_functional.py::test_calc_cutoff PASSED test/test_functional.py::test_calc_cutoff_bad_coverage PASSED test/test_functional.py::test_parsed_readlengths_from_dbdump_output PASSED test/test_functional.py::test_mapped_readlengths_from_dbdump_output PASSED test/test_functional.py::test_average_difference PASSED test/test_functional.py::test_calc_metric_truncation PASSED test/test_functional.py::test_calc_metric_fragmentation PASSED test/test_functional.py::test_args_from_line PASSED test/test_ovlp_filter.py::test_help usage: py.test [-h] [--n_core N_CORE] [--fofn FOFN] [--db DB_FN] [--max_diff MAX_DIFF] [--max_cov MAX_COV] [--min_cov MIN_COV] [--min_len MIN_LEN] [--bestn BESTN] [--stream] [--debug] [--silent] a simple multi-processes LAS ovelap data filter optional arguments: -h, --help show this help message and exit --n_core N_CORE number of processes used for generating consensus; 0 for main process only (default: 4) --fofn FOFN file contains the path of all LAS file to be processed in parallel (default: None) --db DB_FN read db file path (default: None) --max_diff MAX_DIFF max difference of 5' and 3' coverage (default: None) --max_cov MAX_COV max coverage of 5' or 3' coverage (default: None) --min_cov MIN_COV min coverage of 5' or 3' coverage (default: None) --min_len MIN_LEN min length of the reads (default: 2500) --bestn BESTN output at least best n overlaps on 5' or 3' ends if possible (default: 10) --stream stream from LA4Falcon, instead of slurping all at once; can save memory for large data (default: False) --debug, -g single-threaded, plus other aids to debugging (default: False) --silent suppress cmd reporting on stderr (default: False) PASSED test/test_ovlp_filter.py::test_several PASSED test/test_ovlp_filter.py::test_one_not_ignored PASSED test/test_ovlp_filter.py::test_one_line_ignored PASSED test/test_ovlp_filter.py::test_empty PASSED test/test_ovlp_stats.py::test_help usage: py.test [-h] [--n_core N_CORE] --fofn FOFN [--min_len MIN_LEN] [--stream] [--debug] [--silent] a simple multi-processes LAS ovelap data filter optional arguments: -h, --help show this help message and exit --n_core N_CORE number of processes used for generating consensus; 0 for main process only (default: 4) --fofn FOFN file contains the path of all LAS file to be processed in parallel (default: None) --min_len MIN_LEN min length of the reads (default: 2500) --stream stream from LA4Falcon, instead of slurping all at once; can save memory for large data (default: False) --debug, -g single-threaded, plus other aids to debugging (default: False) --silent suppress cmd reporting on stderr (default: False) PASSED test/test_ovlp_stats.py::test PASSED test/test_ovlp_to_graph.py::test_help usage: py.test [-h] [--min_len MIN_LEN] [--min_idt MIN_IDT] [--lfc] [--disable_chimer_bridge_removal] overlap_file a example string graph assembler that is desinged for handling diploid genomes positional arguments: overlap_file a file that contains the overlap information. optional arguments: -h, --help show this help message and exit --min_len MIN_LEN minimum length of the reads to be considered for assembling (default: 4000) --min_idt MIN_IDT minimum alignment identity of the reads to be considered for assembling (default: 96) --lfc use local flow constraint method rather than best overlap method to resolve knots in string graph (default: False) --disable_chimer_bridge_removal disable chimer induced bridge removal (default: False) PASSED test/test_stats_preassembly.py::test_stats_from_sorted_readlengths PASSED test/test_stats_preassembly.py::test_stats_dict PASSED =============================== warnings summary =============================== falcon_kit/FastaReader.py:5 /<>/FALCON/falcon_kit/FastaReader.py:5: DeprecationWarning: the md5 module is deprecated; use hashlib instead import md5 test/test_functional.py:104 test/test_functional.py:104: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_calc_cutoff_from_reverse_sorted_readlength_counts will be ignored def test_calc_cutoff_from_reverse_sorted_readlength_counts(): test/test_functional.py::test_calc_cutoff_bad_coverage /<>/FALCON/test/test_functional.py:168: DeprecationWarning: BaseException.message has been deprecated as of Python 2.6 eq_(expected_message, ctx.exception.message) -- Docs: https://docs.pytest.org/en/latest/warnings.html - generated xml file: /<>/FALCON/test.basic.xml -- =============== 33 passed, 1 xfailed, 3 warnings in 0.27 seconds =============== py.test -v -s --junit-xml=test.doctest.xml --doctest-modules falcon_kit/functional.py ============================= test session starts ============================== platform linux2 -- Python 2.7.17, pytest-4.6.6, py-1.8.0, pluggy-0.13.0 -- /usr/bin/python2 cachedir: .pytest_cache rootdir: /<>/FALCON collecting ... collected 5 items falcon_kit/functional.py::falcon_kit.functional.choose_cat_fasta PASSED falcon_kit/functional.py::falcon_kit.functional.first_block_las PASSED falcon_kit/functional.py::falcon_kit.functional.num2int PASSED falcon_kit/functional.py::falcon_kit.functional.parse_2columns_of_ints PASSED falcon_kit/functional.py::falcon_kit.functional.weighted_average PASSED - generated xml file: /<>/FALCON/test.doctest.xml - =========================== 5 passed in 0.02 seconds =========================== cp -f test.basic.xml nose.basic.xml cp -f test.doctest.xml nose.doctest.xml make[2]: Leaving directory '/<>/FALCON' PATH=/<>/inst/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /usr/bin/make test make[2]: Entering directory '/<>' /usr/bin/make -C ./FALCON-make/ test make[3]: Entering directory '/<>/FALCON-make' /usr/bin/make -C /<>/FALCON-examples test make[4]: Entering directory '/<>/FALCON-examples' /usr/bin/make run-synth0 make[5]: Entering directory '/<>/FALCON-examples' cd run/synth0; rm -rf 0-rawreads/ 1-preads_ovl/ 2-asm-falcon/; ls -l; fc_run.py fc_run.cfg logging.ini total 40 -rwxr-xr-x 1 buildd buildd 1067 Dec 16 2017 check.py drwxr-xr-x 3 buildd buildd 4096 Dec 16 2017 data -rw-r--r-- 1 buildd buildd 1611 Dec 16 2017 fc_preads.cfg -rw-r--r-- 1 buildd buildd 1631 Dec 16 2017 fc_run.cfg -rw-r--r-- 1 buildd buildd 28 Dec 16 2017 input.fofn -rw-r--r-- 1 buildd buildd 461 Dec 16 2017 logging.ini -rw-r--r-- 1 buildd buildd 770 Dec 16 2017 logging.json -rw-r--r-- 1 buildd buildd 1026 Dec 16 2017 logging.many.ini -rw-r--r-- 1 buildd buildd 332 Dec 16 2017 makefile -rw-r--r-- 1 buildd buildd 56 Dec 16 2017 preads.fofn [5261]$('lfs setstripe -c 12 /<>/FALCON-examples/run/synth0') sh: 1: lfs: not found [5261]WARNING: Call 'lfs setstripe -c 12 /<>/FALCON-examples/run/synth0' returned 32512. 2020-01-05 12:52:22,411[INFO] Setup logging from file "logging.ini". 2020-01-05 12:52:22,411[INFO] fc_run started with configuration fc_run.cfg /<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/run_support.py:172: UserWarning: Deprecated setting in config: 'pa_concurrent_jobs' -- Prefer da_concurrent_jobs and la_concurrent_jobs separately warnings.warn("Deprecated setting in config: 'pa_concurrent_jobs' -- Prefer da_concurrent_jobs and la_concurrent_jobs separately") /<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/run_support.py:176: UserWarning: Deprecated setting in config: 'ovlp_concurrent_jobs' -- Prefer pda_concurrent_jobs and pla_concurrent_jobs separately warnings.warn("Deprecated setting in config: 'ovlp_concurrent_jobs' -- Prefer pda_concurrent_jobs and pla_concurrent_jobs separately") 2020-01-05 12:52:22,412[INFO] No target specified, assuming "assembly" as target /<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/run_support.py:376: UserWarning: Unexpected keys in input config: set(['pa_concurrent_jobs', 'ovlp_concurrent_jobs']) warnings.warn("Unexpected keys in input config: %s" %repr(unused)) 2020-01-05 12:52:22,412[WARNING] In simple_pwatcher_bridge, pwatcher_impl=>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/blocking.pyc'> 2020-01-05 12:52:22,412[INFO] In simple_pwatcher_bridge, pwatcher_impl=>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/blocking.pyc'> 2020-01-05 12:52:22,412[INFO] job_type='string', job_queue='bash -C ${CMD}', sge_option='-pe smp 8 -q bash -C ${CMD}', use_tmpdir=False, squash=True 2020-01-05 12:52:22,413[INFO] Num unsatisfied: 1, graph: 1 2020-01-05 12:52:22,413[INFO] About to submit: Node(0-rawreads/raw-fofn-abs) 2020-01-05 12:52:22,414[INFO] !chmod +x /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run-P09bc476edbca95.bash 2020-01-05 12:52:22,417[INFO] sleep 0.1s 2020-01-05 12:52:22,418[INFO] Popen: 'bash -C /<>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/mains/job_start.sh' executable=${PYPEFLOW_JOB_START_SCRIPT} + executable=/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run-P09bc476edbca95.bash timeout=${PYPEFLOW_JOB_START_TIMEOUT:-60} # wait 60s by default + timeout=60 # Wait up to timeout seconds for the executable to become "executable", # then exec. #timeleft = int(timeout) while [[ ! -x "${executable}" ]]; do if [[ "${timeout}" == "0" ]]; then echo "timed out waiting for (${executable})" exit 77 fi echo "not executable: '${executable}', waiting ${timeout}s" sleep 1 timeout=$((timeout-1)) done + [[ ! -x /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run-P09bc476edbca95.bash ]] bash ${executable} + bash /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run-P09bc476edbca95.bash + '[' '!' -d /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs ']' + cd /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs + eval '/bin/bash run.sh' ++ /bin/bash run.sh cd /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs + cd /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs bash task.sh + bash task.sh bos02-s390x-015 APT_CONFIG=/var/lib/sbuild/apt.conf CC=gcc CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2 CXX=g++ CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security DEB_BUILD_ARCH=s390x DEB_BUILD_ARCH_ABI=base DEB_BUILD_ARCH_BITS=64 DEB_BUILD_ARCH_CPU=s390x DEB_BUILD_ARCH_ENDIAN=big DEB_BUILD_ARCH_LIBC=gnu DEB_BUILD_ARCH_OS=linux DEB_BUILD_GNU_CPU=s390x DEB_BUILD_GNU_SYSTEM=linux-gnu DEB_BUILD_GNU_TYPE=s390x-linux-gnu DEB_BUILD_MULTIARCH=s390x-linux-gnu DEB_BUILD_OPTIONS=noautodbgsym parallel=4 DEB_HOST_ARCH=s390x DEB_HOST_ARCH_ABI=base DEB_HOST_ARCH_BITS=64 DEB_HOST_ARCH_CPU=s390x DEB_HOST_ARCH_ENDIAN=big DEB_HOST_ARCH_LIBC=gnu DEB_HOST_ARCH_OS=linux DEB_HOST_GNU_CPU=s390x DEB_HOST_GNU_SYSTEM=linux-gnu DEB_HOST_GNU_TYPE=s390x-linux-gnu DEB_HOST_MULTIARCH=s390x-linux-gnu DEB_RULES_REQUIRES_ROOT=binary-targets DEB_TARGET_ARCH=s390x DEB_TARGET_ARCH_ABI=base DEB_TARGET_ARCH_BITS=64 DEB_TARGET_ARCH_CPU=s390x DEB_TARGET_ARCH_ENDIAN=big DEB_TARGET_ARCH_LIBC=gnu DEB_TARGET_ARCH_OS=linux DEB_TARGET_GNU_CPU=s390x DEB_TARGET_GNU_SYSTEM=linux-gnu DEB_TARGET_GNU_TYPE=s390x-linux-gnu DEB_TARGET_MULTIARCH=s390x-linux-gnu DH_INTERNAL_BUILDFLAGS=1 DH_INTERNAL_OPTIONS=-a DH_INTERNAL_OVERRIDE=dh_auto_test FALCON_INSTALL_RULE=install FALCON_PREFIX=/<>/inst FALCON_WORKSPACE=/<> FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong GCJFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro LOGNAME=buildd MAKEFLAGS=w MAKELEVEL=6 MFLAGS=-w OBJCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security OBJCXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security OLDPWD=/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs PATH=/<>/inst/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PERL_USE_UNSAFE_INC=1 PWD=/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs PYPEFLOW_JOB_START_SCRIPT=/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run-P09bc476edbca95.bash PYPEFLOW_JOB_START_TIMEOUT=60 PYTHONPATH=/<>/inst/pylib:/<>/inst/pylib: SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18293063 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18293063 SCHROOT_COMMAND=dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18293063 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh SHLVL=3 SOURCE_DATE_EPOCH=1513450337 TERM=unknown USER=buildd V=1 _=/usr/bin/env /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs 2020-01-05 12:52:22,463 - root - DEBUG - Running "/<>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/do_task.py /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/task.json" 2020-01-05 12:52:22,464 - root - DEBUG - Checking existence of '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/task.json' with timeout=60 2020-01-05 12:52:22,464 - root - DEBUG - Loading JSON from '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/task.json' 2020-01-05 12:52:22,465 - root - DEBUG - {u'inputs': {u'i_fofn': u'/<>/FALCON-examples/run/synth0/input.fofn'}, u'outputs': {u'o_fofn': u'input.fofn'}, u'parameters': {}, u'python_function': u'falcon_kit.pype_tasks.task_make_fofn_abs_raw'} 2020-01-05 12:52:22,465 - root - DEBUG - CD: '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' <- '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' 2020-01-05 12:52:22,465 - root - DEBUG - Checking existence of u'/<>/FALCON-examples/run/synth0/input.fofn' with timeout=60 2020-01-05 12:52:22,473 - root - DEBUG - CD: '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' <- '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' 2020-01-05 12:52:22,473 - falcon_kit.run_support - DEBUG - CD: u'/<>/FALCON-examples/run/synth0' <- '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' 2020-01-05 12:52:22,473 - falcon_kit.run_support - DEBUG - CD: u'/<>/FALCON-examples/run/synth0' -> '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' 2020-01-05 12:52:22,473 - pypeflow.do_support - INFO - !/bin/bash -vex noop.sh echo NOOP raw + echo NOOP raw NOOP raw 2020-01-05 12:52:22,475 - root - DEBUG - CD: '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' -> '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' 2020-01-05 12:52:22,475 - root - DEBUG - Checking existence of u'input.fofn' with timeout=60 2020-01-05 12:52:22,475 - root - DEBUG - CD: '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' -> '/<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs' real 0m0.051s user 0m0.037s sys 0m0.013s touch /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run.sh.done + touch /<>/FALCON-examples/run/synth0/0-rawreads/raw-fofn-abs/run.sh.done + finish + echo 'finish code: 0' finish code: 0 2020-01-05 12:52:22,519[INFO] recently_satisfied: set([Node(0-rawreads/raw-fofn-abs)]) 2020-01-05 12:52:22,519[INFO] Num satisfied in this iteration: 1 2020-01-05 12:52:22,519[ERROR] Noop. We cannot kill blocked threads. Hopefully, everything will die on SIGTERM. Traceback (most recent call last): File "/<>/inst/bin/fc_run.py", line 4, in __import__('pkg_resources').run_script('falcon-kit==0.7', 'fc_run.py') File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 666, in run_script self.require(requires)[0].run_script(script_name, ns) File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1462, in run_script exec(code, namespace, namespace) File "/<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/EGG-INFO/scripts/fc_run.py", line 5, in main(sys.argv) File "/<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/mains/run1.py", line 466, in main main1(argv[0], args.config, args.logger) File "/<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/mains/run1.py", line 137, in main1 input_fofn_plf=input_fofn_plf, File "/<>/inst/pylib/falcon_kit-0.7-py2.7-linux-s390x.egg/falcon_kit/mains/run1.py", line 173, in run wf.refreshTargets([fofn_abs_task]) File "/<>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 226, in refreshTargets self._refreshTargets(updateFreq, exitOnFailure) File "/<>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 284, in _refreshTargets ready.update(find_next_ready_and_remove(unsatg, node)) File "/<>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 177, in find_next_ready_and_remove for n in g.successors_iter(node): AttributeError: 'DiGraph' object has no attribute 'successors_iter' make[5]: *** [makefile:4: run-synth0] Error 1 make[5]: Leaving directory '/<>/FALCON-examples' make[4]: *** [makefile:21: full-test] Error 2 make[4]: Leaving directory '/<>/FALCON-examples' make[3]: *** [makefile:67: test] Error 2 make[3]: Leaving directory '/<>/FALCON-make' make[2]: *** [makefile:22: test] Error 2 make[2]: Leaving directory '/<>' make[1]: *** [debian/rules:32: integration-tests] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:14: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1252 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 49916 Build-Time: 23 Distribution: focal Fail-Stage: build Host Architecture: s390x Install-Time: 12 Job: falcon_1.8.8-1ubuntu1.dsc Machine Architecture: s390x Package: falcon Package-Time: 37 Source-Version: 1.8.8-1ubuntu1 Space: 49916 Status: attempted Version: 1.8.8-1ubuntu1 -------------------------------------------------------------------------------- Finished at 20200105-1252 Build needed 00:00:37, 49916k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18293063 Scanning for processes to kill in build PACKAGEBUILD-18293063