https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18296621 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-019 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:46:18 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 16:41:56 ntpdate[1918]: adjust time server 10.211.37.1 offset 0.018001 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18296621 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18296621 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18296621 Starting target for build PACKAGEBUILD-18296621 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18296621 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18296621 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18296621 Updating target for build PACKAGEBUILD-18296621 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf Packages [931 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted armhf Packages [7048 B] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8423 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse armhf Packages [123 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.5 MB in 6s (2548 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 90 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 57.8 MB of archives. After this operation, 41.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf linux-libc-dev armhf 5.3.0-24.26 [1079 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 9.2.1-21ubuntu1 [41.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.33.1-6ubuntu3 [2102 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.33.1-6ubuntu3 [315 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.33.1-6ubuntu3 [3352 B] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9-base armhf 9.2.1-21ubuntu1 [19.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:9.2.1-21ubuntu1 [37.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 9.2.1-21ubuntu1 [77.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 9.2.1-21ubuntu1 [7104 B] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libasan5 armhf 9.2.1-21ubuntu1 [387 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 9.2.1-21ubuntu1 [118 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf g++-9 armhf 9.2.1-21ubuntu1 [8541 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++-9-dev armhf 9.2.1-21ubuntu1 [1777 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-9-dev armhf 9.2.1-21ubuntu1 [690 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9 armhf 9.2.1-21ubuntu1 [8073 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf cpp-9 armhf 9.2.1-21ubuntu1 [7470 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 9.2.1-21ubuntu1 [451 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu4 [58.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu4 [124 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu4 [19.8 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu4 [163 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu4 [135 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu4 [89.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu4 [109 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu4 [959 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.250ubuntu2 [5776 B] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244-3ubuntu1 [9364 B] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1 [9692 B] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.27-1 [12.7 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244-3ubuntu1 [68.8 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu7 [118 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-1ubuntu1 [163 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.18.1-2 [166 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2 [732 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu1 [32.4 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu4 [108 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244-3ubuntu1 [3526 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244-3ubuntu1 [239 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.5 [772 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.5 [1237 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.30.1-1ubuntu1 [460 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.8 MB in 2s (24.8 MB/s) (Reading database ... 12487 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18296621 armhf focal -c chroot:build-PACKAGEBUILD-18296621 --arch=armhf --dist=focal --nolog gemma_0.98.1+dfsg-1.dsc Initiating build PACKAGEBUILD-18296621 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:46:18 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-019.buildd +==============================================================================+ | gemma 0.98.1+dfsg-1 (armhf) 05 Jan 2020 16:42 | +==============================================================================+ Package: gemma Version: 0.98.1+dfsg-1 Source Version: 0.98.1+dfsg-1 Distribution: focal Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/gemma-vB5RXT/gemma-0.98.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gemma-vB5RXT' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18296621/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gemma_0.98.1+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-rWklKN/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-rWklKN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rWklKN/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rWklKN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rWklKN/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-rWklKN/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (125 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-rWklKN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14395 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), gfortran, libopenblas-dev, libeigen3-dev, libgsl-dev, zlib1g-dev, catch, shunit2 Filtered Build-Depends: debhelper (>= 11~), gfortran, libopenblas-dev, libeigen3-dev, libgsl-dev, zlib1g-dev, catch, shunit2 dpkg-deb: building package 'sbuild-build-depends-gemma-dummy' in '/<>/resolver-t5lyeJ/apt_archive/sbuild-build-depends-gemma-dummy.deb'. Ign:1 copy:/<>/resolver-t5lyeJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-t5lyeJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-t5lyeJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-t5lyeJ/apt_archive ./ Sources [254 B] Get:5 copy:/<>/resolver-t5lyeJ/apt_archive ./ Packages [572 B] Fetched 2945 B in 0s (127 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gemma build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils catch debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-9 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libeigen3-dev libelf1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu63 libmagic-mgc libmagic1 libopenblas-base libopenblas-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf shunit2 zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff libeigen3-doc libmpfrc++-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils catch debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-9 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libeigen3-dev libelf1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu63 libmagic-mgc libmagic1 libopenblas-base libopenblas-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-gemma-dummy shunit2 zlib1g-dev 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 31.9 MB of archives. After this operation, 117 MB of additional disk space will be used. Get:1 copy:/<>/resolver-t5lyeJ/apt_archive ./ sbuild-build-depends-gemma-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.1-3 [23.2 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.37-6 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.37-6 [67.7 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.37-6 [22.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1 [40.9 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.63.3-1 [1118 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libicu63 armhf 63.2-2 [8002 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu1 [554 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11ubuntu1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu3 [522 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:22 http://ftpmaster.internal/ubuntu focal/universe armhf catch armhf 1.12.1-1 [114 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-11 [194 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.7.1ubuntu1 [875 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran5 armhf 9.2.1-21ubuntu1 [252 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran-9-dev armhf 9.2.1-21ubuntu1 [306 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf gfortran-9 armhf 9.2.1-21ubuntu1 [8146 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf gfortran armhf 4:9.2.1-3.1ubuntu1 [1380 B] Get:40 http://ftpmaster.internal/ubuntu focal/universe armhf libgslcblas0 armhf 2.5+dfsg-6 [62.0 kB] Get:41 http://ftpmaster.internal/ubuntu focal/universe armhf libgsl23 armhf 2.5+dfsg-6 [694 kB] Get:42 http://ftpmaster.internal/ubuntu focal/universe armhf libgsl-dev armhf 2.5+dfsg-6 [902 kB] Get:43 http://ftpmaster.internal/ubuntu focal/universe armhf libopenblas-base armhf 0.3.7+ds-1 [2061 kB] Get:44 http://ftpmaster.internal/ubuntu focal/universe armhf libopenblas-dev armhf 0.3.7+ds-1 [1985 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu3 [42.2 kB] Get:46 http://ftpmaster.internal/ubuntu focal/universe armhf shunit2 all 2.1.6-1.1ubuntu1 [38.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] Get:48 http://ftpmaster.internal/ubuntu focal/universe armhf libeigen3-dev all 3.3.7-1 [814 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.9 MB in 2s (13.6 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 14395 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_armhf.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-3_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_armhf.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up libpipeline1:armhf (1.5.1-3) ... Setting up shunit2 (2.1.6-1.1ubuntu1) ... Setting up libgslcblas0:armhf (2.5+dfsg-6) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:armhf (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:armhf (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libicu63:armhf (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libgsl23:armhf (2.5+dfsg-6) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up libgfortran5:armhf (9.2.1-21ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up catch (1.12.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libopenblas-base:armhf (0.3.7+ds-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libtool (2.4.6-11) ... Setting up libgfortran-9-dev:armhf (9.2.1-21ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libopenblas-dev:armhf (0.3.7+ds-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up gfortran-9 (9.2.1-21ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-gemma-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic arm64 (armv7l) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-arm-linux-gnueabihf_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 catch_1.12.1-1 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1ubuntu1 gfortran-9_9.2.1-21ubuntu1 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.1-6ubuntu3 libblkid1_2.34-0.1ubuntu4 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libeigen3-dev_3.3.7-1 libelf1_0.176-1.1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-21ubuntu1 libgfortran5_9.2.1-21ubuntu1 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libopenblas-base_0.3.7+ds-1 libopenblas-dev_0.3.7+ds-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gemma-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shunit2_2.1.6-1.1ubuntu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Dec 18 15:38:49 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gemma_0.98.1+dfsg-1.dsc dpkg-source: info: extracting gemma in gemma-0.98.1+dfsg dpkg-source: info: unpacking gemma_0.98.1+dfsg.orig.tar.xz dpkg-source: info: unpacking gemma_0.98.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Reproducible_builds.patch dpkg-source: info: applying no-lquadmath.patch dpkg-source: info: applying Makefile.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18296621 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18296621 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18296621 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gemma dpkg-buildpackage: info: source version 0.98.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/gemma-0.98.1+dfsg' rm -vf ./src/*.o rm -vf ./src/*~ rm -vf ./test/src/*.o rm -vf ./bin/gemma rm -vf ./bin/unittests-gemma make[1]: Leaving directory '/<>/gemma-0.98.1+dfsg' debian/rules override_dh_clean make[1]: Entering directory '/<>/gemma-0.98.1+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/gemma.substvars debian/gemma-doc.substvars debian/files rm -fr -- debian/gemma/ debian/tmp/ debian/gemma-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *.log rm -rf test/output/ rm -f bin/gemma make[1]: Leaving directory '/<>/gemma-0.98.1+dfsg' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/gemma-0.98.1+dfsg' g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/bslmm.o src/bslmm.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/bslmmdap.o src/bslmmdap.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/debug.o src/debug.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/eigenlib.o src/eigenlib.cpp src/debug.cpp:60:44: warning: extra ‘;’ [-Wpedantic] 60 | bool is_debug_mode() { return debug_mode; }; | ^ src/debug.cpp:61:54: warning: extra ‘;’ [-Wpedantic] 61 | bool is_debug_data_mode() { return debug_data_mode; }; | ^ src/debug.cpp:62:49: warning: extra ‘;’ [-Wpedantic] 62 | bool is_no_check_mode() { return !debug_check; }; | ^ src/debug.cpp:63:45: warning: extra ‘;’ [-Wpedantic] 63 | bool is_check_mode() { return debug_check; }; | ^ src/debug.cpp:64:53: warning: extra ‘;’ [-Wpedantic] 64 | bool is_fpe_check_mode() { return debug_fpe_check; }; | ^ src/debug.cpp:65:47: warning: extra ‘;’ [-Wpedantic] 65 | bool is_strict_mode() { return debug_strict; }; | ^ src/debug.cpp:66:45: warning: extra ‘;’ [-Wpedantic] 66 | bool is_quiet_mode() { return debug_quiet; }; | ^ src/debug.cpp:67:59: warning: extra ‘;’ [-Wpedantic] 67 | bool is_issue(uint issue) { return issue == debug_issue; }; | ^ src/debug.cpp:68:47: warning: extra ‘;’ [-Wpedantic] 68 | bool is_legacy_mode() { return debug_legacy; }; | ^ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/fastblas.o src/fastblas.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/gemma.o src/gemma.cpp In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/bslmm.cpp:41: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from src/bslmm.cpp:23: /usr/include/c++/9/bits/stl_tempbuf.h: In constructor ‘std::_Temporary_buffer<_ForwardIterator, _Tp>::_Temporary_buffer(_ForwardIterator, std::_Temporary_buffer<_ForwardIterator, _Tp>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = std::pair]’: /usr/include/c++/9/bits/stl_tempbuf.h:243:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 243 | _Temporary_buffer<_ForwardIterator, _Tp>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/param.h:29, from src/bslmmdap.h:22, from src/bslmmdap.cpp:41: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/bslmm.cpp:41: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/param.h:29, from src/bslmmdap.h:22, from src/bslmmdap.cpp:41: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void BSLMMDAP::DAP_CalcBF(const gsl_matrix*, const gsl_matrix*, const gsl_vector*, const gsl_vector*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from src/param.h:27, from src/bslmmdap.h:22, from src/bslmmdap.cpp:41: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/param.h:27, from src/bslmmdap.h:22, from src/bslmmdap.cpp:41: /usr/include/c++/9/bits/stl_map.h: In function ‘void single_ct_regression(const gsl_matrix_int*, const gsl_vector_int*, const gsl_vector*, gsl_vector*, gsl_vector*)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/algorithm:62, from src/bslmm.cpp:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from src/param.h:29, from src/bslmmdap.h:22, from src/bslmmdap.cpp:41: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void BSLMMDAP::DAP_EstimateHyper(size_t, size_t, const std::vector >&, const std::vector&, const std::vector&, const std::vector&, const std::vector > >&, gsl_matrix*, gsl_matrix_int*, gsl_vector_int*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__move_merge_adaptive_backward(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator2, _BidirectionalIterator2, _BidirectionalIterator3, _Compare) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _BidirectionalIterator2 = std::pair*; _BidirectionalIterator3 = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2329 | __move_merge_adaptive_backward(_BidirectionalIterator1 __first1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >]’: /usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1328 | __rotate(_RandomAccessIterator __first, | ^~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2471 | __merge_without_buffer(_BidirectionalIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1443 | return std::__rotate(__first, __middle, __last, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1444 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2512:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2512 | std::__merge_without_buffer(__first, __first_cut, __new_middle, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2513 | __len11, __len22, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2514:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2514 | std::__merge_without_buffer(__new_middle, __second_cut, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2515 | __len1 - __len11, __len2 - __len22, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2755 | __inplace_stable_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _BidirectionalIterator2 = std::pair*; _Distance = int]’: /usr/include/c++/9/bits/stl_algo.h:2372:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2372 | __rotate_adaptive(_BidirectionalIterator1 __first, | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2372:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2372:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1443 | return std::__rotate(__first, __middle, __last, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1444 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Pointer = std::pair*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2410 | __merge_adaptive(_BidirectionalIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2426 | std::__move_merge_adaptive_backward(__first, __middle, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2427 | __buffer_end, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2455:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2455 | = std::__rotate_adaptive(__first_cut, __middle, __second_cut, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2456 | __len1 - __len11, __len22, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2457 | __buffer_size); | ~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2458:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2458 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2459 | __len22, __buffer, __buffer_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2460:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2460 | std::__merge_adaptive(__new_middle, __second_cut, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2461 | __len1 - __len11, | ~~~~~~~~~~~~~~~~~ 2462 | __len2 - __len22, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2463 | __buffer_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _OutputIterator = std::pair*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2633 | __move_merge(_InputIterator __first1, _InputIterator __last1, | ^~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = std::pair*; _OutputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Pointer = std::pair*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2699 | __merge_sort_with_buffer(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2689:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2689 | std::__insertion_sort(__first, __first + __chunk_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2692 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2668 | __result = std::__move_merge(__first, __first + __step_size, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2669 | __first + __step_size, | ~~~~~~~~~~~~~~~~~~~~~~ 2670 | __first + __two_step, | ~~~~~~~~~~~~~~~~~~~~~ 2671 | __result, __comp); | ~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2676 | std::__move_merge(__first, __first + __step_size, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2677 | __first + __step_size, __last, __result, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2668 | __result = std::__move_merge(__first, __first + __step_size, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2669 | __first + __step_size, | ~~~~~~~~~~~~~~~~~~~~~~ 2670 | __first + __two_step, | ~~~~~~~~~~~~~~~~~~~~~ 2671 | __result, __comp); | ~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2676 | std::__move_merge(__first, __first + __step_size, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2677 | __first + __step_size, __last, __result, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2692 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Pointer = std::pair*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]’: /usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2726 | __stable_sort_adaptive(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:2735:31: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2735 | std::__stable_sort_adaptive(__first, __middle, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2736 | __buffer_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2737:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2737 | std::__stable_sort_adaptive(__middle, __last, __buffer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2738 | __buffer_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2742:33: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2742 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2743:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2743 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2745:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2745 | std::__merge_adaptive(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2746 | _Distance(__middle - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2747 | _Distance(__last - __middle), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2748 | __buffer, __buffer_size, | ~~~~~~~~~~~~~~~~~~~~~~~~ 2749 | __comp); | ~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/bslmm.cpp:41: /usr/include/c++/9/bits/vector.tcc: In member function ‘void BSLMM::MCMC(const gsl_matrix*, const gsl_matrix*, const gsl_vector*, const gsl_vector*, const gsl_vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from src/bslmm.cpp:23: /usr/include/c++/9/bits/stl_algo.h:5032:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 5032 | _TmpBuf __buf(__first, std::distance(__first, __last)); | ^~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:5037:29: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 5037 | std::__stable_sort_adaptive(__first, __last, __buf.begin(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5038 | _DistanceType(__buf.size()), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/bslmm.cpp:41: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void BSLMM::MCMC(const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from src/bslmm.cpp:23: /usr/include/c++/9/bits/stl_algo.h:5032:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 5032 | _TmpBuf __buf(__first, std::distance(__first, __last)); | ^~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2760 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2764 | std::__inplace_stable_sort(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2765 | std::__inplace_stable_sort(__middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2766 | std::__merge_without_buffer(__first, __middle, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __middle - __first, | ~~~~~~~~~~~~~~~~~~~ 2768 | __last - __middle, | ~~~~~~~~~~~~~~~~~~ 2769 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:5037:29: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 5037 | std::__stable_sort_adaptive(__first, __last, __buf.begin(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5038 | _DistanceType(__buf.size()), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/gemma_io.o src/gemma_io.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/gzstream.o src/gzstream.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/lapack.o src/lapack.cpp In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/gemma.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/ldr.o src/ldr.cpp /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/lm.o src/lm.cpp In file included from /usr/include/c++/9/map:60, from src/bslmm.h:24, from src/gemma.cpp:49: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/bslmm.h:25, from src/gemma.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function ‘void GEMMA::BatchRun(PARAM&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/bslmm.h:25, from src/gemma.cpp:49: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/bslmm.h:24, from src/gemma.cpp:49: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from src/lapack.h:22, from src/lm.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SUMSTAT&}; _Tp = SUMSTAT; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/lapack.h:22, from src/lm.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LM::AnalyzePlink(const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LM::AnalyzeGene(const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LM::AnalyzeBimbam(const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/lapack.h:22, from src/lm.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void MatrixCalcLmLR(const gsl_matrix*, const gsl_vector*, std::vector >&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/lmm.o src/lmm.cpp /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SNPINFO&}; _Tp = SNPINFO; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h: In function ‘bool ReadFile_bim(const string&, std::vector&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ src/lmm.cpp: In function ‘void CalcPab(size_t, size_t, const gsl_vector*, const gsl_matrix*, const gsl_vector*, gsl_matrix*)’: src/lmm.cpp:281:10: warning: unused variable ‘n_index’ [-Wunused-variable] 281 | size_t n_index = (n_cvt + 2 + 1) * (n_cvt + 2) / 2; // result size | ^~~~~~~ src/lmm.cpp:282:8: warning: unused variable ‘ni_test’ [-Wunused-variable] 282 | auto ni_test = Uab->size1; // inds | ^~~~~~~ src/lmm.cpp: In function ‘double LogL_dev1(double, void*)’: src/lmm.cpp:596:8: warning: unused variable ‘Uab’ [-Wunused-variable] 596 | auto Uab = p->Uab; | ^~~ src/lmm.cpp:597:8: warning: unused variable ‘ab’ [-Wunused-variable] 597 | auto ab = p->ab; | ^~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/logistic.o src/logistic.cpp /usr/include/c++/9/bits/stl_vector.h: In function ‘bool ReadFile_cvt(const string&, std::vector&, std::vector >&, size_t&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘bool ReadFile_column(const string&, std::vector&, std::vector&, const int&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/vector.tcc: In function ‘bool ReadFile_gene(const string&, std::vector&, std::vector&, size_t&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/vector.tcc: In function ‘void Calcq(size_t, const std::vector&, const std::vector&, const std::vector&, const std::vector&, gsl_matrix*, gsl_vector*, gsl_vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘bool ReadFile_pheno(const string&, std::vector >&, std::vector >&, const std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/main.o src/main.cpp /usr/include/c++/9/bits/vector.tcc: In function ‘void ReadFile_beta(const string&, const std::map, unsigned int>&, const std::map, double>&, std::vector&, std::vector&, std::vector&, std::vector&, size_t&, size_t&, size_t&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/mathfunc.o src/mathfunc.cpp In file included from /usr/include/c++/9/map:60, from src/gemma_io.cpp:29: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/gemma_io.cpp:29: /usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In function ‘bool ReadFile_wsnp(const string&, std::map, double>&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, src/mathfunc.cpp: In function ‘bool isMatrixIllConditioned(const gsl_vector*, double)’: src/mathfunc.cpp:390:8: warning: unused variable ‘absmin’ [-Wunused-variable] 390 | auto absmin = get<0>(t); | ^~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/mvlmm.o src/mvlmm.cpp /usr/include/c++/9/bits/stl_map.h: In function ‘bool ReadFile_anno(const string&, std::map, std::__cxx11::basic_string >&, std::map, long int>&, std::map, double>&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h: In function ‘bool ReadFile_geno(const string&, const std::set >&, const gsl_matrix*, std::vector&, std::vector&, const double&, const double&, const double&, const double&, std::map, std::__cxx11::basic_string >&, std::map, long int>&, std::map, double>&, std::vector&, size_t&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/gemma_io.cpp:29: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/lmm.cpp:31: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SUMSTAT&}; _Tp = SUMSTAT; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/map:61, from src/gemma_io.cpp:29: /usr/include/c++/9/bits/stl_map.h: In function ‘void ReadFile_beta(const string&, const std::map, double>&, std::map, std::__cxx11::basic_string >&, std::map, double>&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function ‘void CalcLambda(char, FUNC_PARAM&, double, double, size_t, double&, double&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void CalcLambda(char, FUNC_PARAM&, double, double, size_t, double&, double&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void CalcLambda(char, FUNC_PARAM&, double, double, size_t, double&, double&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/lmm.cpp:31: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LMM::AnalyzeGene(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LMM::AnalyzePlink(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, std::set >)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/gemma_io.cpp:30: /usr/include/c++/9/bits/vector.tcc: In function ‘bool ReadFile_fam(const string&, std::vector >&, std::vector >&, std::map, int>&, const std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/lmm.cpp:31: /usr/include/c++/9/bits/vector.tcc: In function ‘void MatrixCalcLR(const gsl_matrix*, const gsl_matrix*, const gsl_vector*, const gsl_vector*, double, double, size_t, std::vector >&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/regex:51, from src/lmm.cpp:31: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LMM::AnalyzeBimbamGXE(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LMM::AnalyzePlinkGXE(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void LMM::Analyze(std::function, std::allocator >, std::vector > >(unsigned int)>&, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_vector*, std::set >)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘bool ReadFile_wsnp(const string&, size_t, std::map, std::vector >&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/regex:51, from src/mathfunc.cpp:29: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void StandardizeMatrix(gsl_matrix*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MPHSUMSTAT&}; _Tp = MPHSUMSTAT; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void MVLMM::AnalyzeBimbam(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_matrix*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/vector.tcc: In member function ‘void MVLMM::AnalyzeBimbamGXE(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/vector.tcc: In member function ‘void MVLMM::AnalyzePlinkGXE(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/vector.tcc: In member function ‘void MVLMM::AnalyzePlink(const gsl_matrix*, const gsl_vector*, const gsl_matrix*, const gsl_matrix*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/gemma_io.h:28, from src/mvlmm.cpp:42: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/param.o src/param.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/prdt.o src/prdt.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/varcov.o src/varcov.cpp g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o src/vc.o src/vc.cpp In file included from /usr/include/c++/9/vector:72, from src/varcov.cpp:31: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void Calc_Cor(std::vector >&, std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from src/gemma_io.h:27, from src/prdt.cpp:35: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/gemma_io.h:27, from src/prdt.cpp:35: /usr/include/c++/9/bits/stl_map.h: In member function ‘void PRDT::AnalyzePlink(gsl_vector*)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SNPINFO&}; _Tp = SNPINFO; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/stl_map.h: In member function ‘void PRDT::AnalyzeBimbam(gsl_vector*)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/vector.tcc: In member function ‘void VARCOV::AnalyzePlink()’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/varcov.cpp:31: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/varcov.cpp:31: /usr/include/c++/9/bits/vector.tcc: In member function ‘void VARCOV::AnalyzeBimbam()’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/varcov.cpp:31: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h: In function ‘void CalcVCss(const gsl_matrix*, const gsl_matrix*, const gsl_matrix*, const gsl_vector*, const gsl_vector*, double, std::vector&, std::vector&, double&, double&, std::vector&, std::vector&, std::vector&, std::vector&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void VC::CalcVChe(const gsl_matrix*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void VC::CalcVCreml(bool, const gsl_matrix*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc: In function ‘void CalcCIss(const gsl_matrix*, const gsl_matrix*, const gsl_matrix*, const gsl_matrix*, const gsl_matrix*, const gsl_vector*, const gsl_vector*, const gsl_vector*, const std::vector&, const std::vector&, std::vector&, double&, double&, std::vector&, std::vector&, std::vector&, std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/param.h:29, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void VC::CalcVCacl(const gsl_matrix*, const gsl_matrix*, const gsl_vector*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘void JackknifeAKtoS(const gsl_matrix*, const gsl_matrix*, const gsl_matrix*, gsl_matrix*, gsl_matrix*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from src/vc.cpp:28: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void PARAM::CheckCvt()’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void PARAM::ProcessCvtPhen()’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from src/param.h:27, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/param.h:27, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from src/param.h:29, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function ‘void PARAM::UpdateWeight(size_t, const std::map, double>&, size_t, const gsl_vector*, std::map, double>&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/param.h:27, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from src/vc.cpp:33: /usr/include/c++/9/bits/stl_vector.h: In function ‘void ReadFile_cor(const string&, const std::set >&, std::vector >&, std::vector&, std::vector&, std::vector&, std::map, unsigned int>&, std::map, double>&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/vc.cpp:28: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from src/param.h:29, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function ‘void PARAM::ObtainWeight(const std::set >&, std::map, double>&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/param.h:27, from src/gemma.h:24, from src/param.cpp:38: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc: In function ‘void ReadFile_beta(bool, const string&, const std::map, unsigned int>&, std::map, unsigned int>&, std::map, double>&, std::map, unsigned int>&, gsl_vector*, gsl_vector*, gsl_vector*, size_t&, size_t&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from src/vc.cpp:28: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, double> >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from src/vc.cpp:33: /usr/include/c++/9/bits/vector.tcc: In function ‘void ReadFile_cor(const string&, const std::vector >&, const std::vector&, const std::vector&, const std::vector&, const std::map, unsigned int>&, const std::map, unsigned int>&, const std::map, double>&, const std::map, unsigned int>&, size_t, const double&, const double&, const double&, gsl_matrix*, gsl_matrix*, gsl_vector*, size_t&, size_t&, size_t&, size_t&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -DNDEBUG -O3 -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc src/bslmm.o src/bslmmdap.o src/debug.o src/eigenlib.o src/fastblas.o src/gemma.o src/gemma_io.o src/gzstream.o src/lapack.o src/ldr.o src/lm.o src/lmm.o src/logistic.o src/main.o src/mathfunc.o src/mvlmm.o src/param.o src/prdt.o src/varcov.o src/vc.o -lgsl -lz -lopenblas -o ./bin/gemma make[1]: Leaving directory '/<>/gemma-0.98.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/gemma-0.98.1+dfsg' dh_auto_test --no-parallel make -j1 check make[2]: Entering directory '/<>/gemma-0.98.1+dfsg' g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o test/src/unittests-main.o test/src/unittests-main.cpp In file included from /usr/include/c++/9/vector:72, from /usr/include/catch/catch.hpp:677, from test/src/unittests-main.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/catch/catch.hpp:677, from test/src/unittests-main.cpp:2: /usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/gemma-0.98.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/catch -I/usr/include/eigen -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -c -o test/src/unittests-math.o test/src/unittests-math.cpp In file included from /usr/include/c++/9/bits/stl_algobase.h:67, from /usr/include/c++/9/bits/char_traits.h:39, from /usr/include/c++/9/ios:40, from /usr/include/c++/9/istream:38, from /usr/include/c++/9/sstream:38, from /usr/include/catch/catch.hpp:384, from test/src/unittests-math.cpp:1: /usr/include/c++/9/bits/stl_iterator.h: In function ‘_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector]’: /usr/include/c++/9/bits/stl_iterator.h:1010:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1010 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) | ^~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DOPENBLAS -isystem/usr/local/opt/openblas/include -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc -Og -g -DHAVE_INLINE -pthread -Wall -std=gnu++11 -isystem/usr/include/eigen3 -Icontrib/catch-1.9.7 -Isrc ./test/src/unittests-main.o ./test/src/unittests-math.o src/bslmm.o src/bslmmdap.o src/debug.o src/eigenlib.o src/fastblas.o src/gemma.o src/gemma_io.o src/gzstream.o src/lapack.o src/ldr.o src/lm.o src/lmm.o src/logistic.o src/mathfunc.o src/mvlmm.o src/param.o src/prdt.o src/varcov.o src/vc.o -lgsl -lz -lopenblas -o ./bin/unittests-gemma ./bin/unittests-gemma Mismatch coordinates (1,0)0:3! This example computes real matrix C=alpha*A*B+beta*C using Intel(R) MKL function dgemm, where A, B, and C are matrices and alpha and beta are double precision scalars Initializing data for matrix multiplication C=A*B for matrix A(2000x200) and matrix B(200x1000) Allocating memory for matrices aligned on 64-byte boundary for better performance Intializing matrix data Computing matrix product using Intel(R) MKL dgemm function via CBLAS interface This example computes real matrix C=alpha*A*B+beta*C using Intel(R) MKL function dgemm, where A, B, and C are matrices and alpha and beta are double precision scalars Initializing data for matrix multiplication C=A*B for matrix A(2000x200) and matrix B(200x1000) Allocating memory for matrices aligned on 64-byte boundary for better performance Intializing matrix data Computing matrix product using Intel(R) MKL dgemm function via CBLAS interface Computations completed. =============================================================================== All tests passed (24 assertions in 4 test cases) rm -vf test/output/* cd test && ./dev_test_suite.sh | tee ../dev_test.log run system shunit2 testLinearModel GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1940 ## number of analyzed individuals = 1410 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs/var = 12226 ## number of analyzed SNPs = 10768 0% ==== 8% ======== 16% ============ 25% ================ 33% ==================== 41% ======================== 49% ============================ 57% ================================ 65% ==================================== 74% ======================================== 82% ============================================ 90% ================================================= 98% ================================================== 100% **** INFO: Done. ## total computation time = 0.313325 min ASSERT:expected:<4053667109.69> but was:<4053667109.67> testBXDStandardRelatednessMatrixKSingularError GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** INFO: no intercept term is found in the cvt file: a column of 1s is added. GSL ERROR: matrix is singular in lu.c at line 266 errno 1 testBXDStandardRelatednessMatrixK GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** INFO: no intercept term is found in the cvt file: a column of 1s is added. ## number of total individuals = 198 ## number of analyzed individuals = 67 ## number of covariates = 3 ## number of phenotypes = 1 ## number of total SNPs/var = 7320 ## number of analyzed SNPs = 7317 Calculating Relatedness Matrix ... 0% ====== 14% ============= 27% ==================== 41% =========================== 55% ================================== 68% ======================================== 82% =============================================== 96% ================================================== 100% **** INFO: Done. ASSERT:expected:<-116.11> but was:<-116.13> testBXDLMLikelihoodRatio GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** INFO: no intercept term is found in the cvt file: a column of 1s is added. ## number of total individuals = 198 ## number of analyzed individuals = 67 ## number of covariates = 3 ## number of phenotypes = 1 ## number of total SNPs/var = 7320 ## number of analyzed SNPs = 7317 0% ====== 14% ============= 27% ==================== 41% =========================== 55% ================================== 68% ======================================== 82% =============================================== 96% ================================================== 100% **** INFO: Done. ASSERT:expected:<3089042886.28> but was:<3089042886.08> testBXDLMMLikelihoodRatio GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** INFO: no intercept term is found in the cvt file: a column of 1s is added. ## number of total individuals = 198 ## number of analyzed individuals = 67 ## number of covariates = 3 ## number of phenotypes = 1 ## number of total SNPs/var = 7320 ## number of analyzed SNPs = 7317 Start Eigen-Decomposition... pve estimate =0.00100086 se(pve) =0.204165 0% ====== 14% ============= 27% ==================== 41% =========================== 55% ================================== 68% ======================================== 82% =============================================== 96% ================================================== 100% ================================================== 100% **** INFO: Done. ASSERT:expected:<3088458212.93> but was:<3088458212.86> testCenteredRelatednessMatrixissue188 GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1008 ## number of analyzed individuals = 876 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs/var = 2000 ## number of analyzed SNPs = 1850 Calculating Relatedness Matrix ... 0% ========================= 50% ================================================== 100% **** WARNING: K has 75 eigenvalues close to zero in src/gemma.cpp at line 1912 **** WARNING: K is ill conditioned! in src/gemma.cpp at line 1912 **** INFO: Done. ASSERT:expected:<193.80> but was:<193.78> testLMMissue188 GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1008 ## number of analyzed individuals = 876 ## number of covariates = 1 ## number of phenotypes = 1 ## number of total SNPs/var = 2000 ## number of analyzed SNPs = 1850 **** WARNING: K has 3 eigenvalues close to zero in src/gemma.cpp at line 2588 **** WARNING: K is ill conditioned! in src/gemma.cpp at line 2588 Start Eigen-Decomposition... **** WARNING: Matrix G has 3 eigenvalues close to zero pve estimate =0.631857 se(pve) =0.0548406 0% ========================= 50% ================================================== 100% **** INFO: Done. testCenteredRelatednessMatrixKLOCO1 GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** TEST MODE: trim individuals from 1940 to 400 **** TEST MODE: trim individuals from 1940 to 400 ## number of total individuals = 400 ## number of analyzed individuals = 247 ## number of covariates = 1 ## number of phenotypes = 1 ## leave one chromosome out (LOCO) = 1 ## number of total SNPs/var = 12226 ## number of considered SNPS = 1000 ## number of SNPS for K = 11182 ## number of SNPS for GWAS = 1044 ## number of analyzed SNPs = 889 Calculating Relatedness Matrix ... 0% ==== 8% ======== 16% ============ 25% ================ 33% ==================== 41% ======================== 49% ============================ 57% ================================ 65% ==================================== 74% ======================================== 82% ============================================ 90% ================================================= 98% ================================================== 100% **** INFO: Done. ## total computation time = 0.147174 min testUnivariateLinearMixedModelLOCO1 GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... **** TEST MODE: trim individuals from 1940 to 400 **** TEST MODE: trim individuals from 1940 to 400 ## number of total individuals = 400 ## number of analyzed individuals = 247 ## number of covariates = 1 ## number of phenotypes = 1 ## leave one chromosome out (LOCO) = 1 ## number of total SNPs/var = 12226 ## number of considered SNPS = 1000 ## number of SNPS for K = 11182 ## number of SNPS for GWAS = 1044 ## number of analyzed SNPs = 889 Start Eigen-Decomposition... pve estimate =0.678775 se(pve) =0.0717914 0% ==== 8% ======== 16% ============ 25% ================ 33% ==================== 41% ======================== 49% ============================ 57% ================================ 65% ==================================== 74% ======================================== 82% ============================================ 90% ================================================= 98% ================================================== 100% ================================================== 100% **** INFO: Done. ## total computation time = 0.0683408 min testPlinkCenteredRelatednessMatrixKLOCO1 testPlinkUnivariateLinearMixedModelLOCO1 testCorrelatedPhenotypesMvLLM GEMMA 0.98.1 (2018-12-10) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1000 ## number of analyzed individuals = 1000 ## number of covariates = 1 ## number of phenotypes = 5 ## number of total SNPs/var = 100 ## number of analyzed SNPs = 100 REMLE estimate for Vg in the null model: 0.8091 0.1435 0.0660 -0.1456 -0.0664 0.1165 0.0907 0.0362 -0.0830 0.0639 -0.5533 -0.0985 0.1171 -0.0765 0.4131 se(Vg): 0.0736 0.0355 0.0299 0.0421 0.0264 0.0422 0.0444 0.0279 0.0430 0.0479 0.0516 0.0254 0.0295 0.0313 0.0389 REMLE estimate for Ve in the null model: 0.0334 0.0267 0.4502 -0.0529 -0.0883 0.6004 0.0683 0.1413 -0.6502 0.8400 -0.0128 -0.0041 -0.0706 0.0880 0.0419 se(Ve): 0.0378 0.0252 0.0329 0.0299 0.0281 0.0456 0.0332 0.0319 0.0494 0.0583 0.0266 0.0186 0.0215 0.0242 0.0208 REMLE likelihood = -3813.3258 MLE estimate for Vg in the null model: 0.8082 0.1434 0.0660 -0.1455 -0.0664 0.1165 0.0906 0.0362 -0.0830 0.0639 -0.5528 -0.0984 0.1170 -0.0764 0.4127 se(Vg): 0.0735 0.0355 0.0298 0.0420 0.0264 0.0421 0.0443 0.0278 0.0430 0.0478 0.0515 0.0254 0.0295 0.0313 0.0388 MLE estimate for Ve in the null model: 0.0334 0.0267 0.4497 -0.0529 -0.0882 0.5997 0.0682 0.1412 -0.6495 0.8391 -0.0128 -0.0040 -0.0705 0.0879 0.0418 se(Ve): 0.0378 0.0252 0.0329 0.0298 0.0281 0.0455 0.0331 0.0318 0.0493 0.0582 0.0265 0.0185 0.0215 0.0242 0.0207 MLE likelihood = -3814.3913 0% ================================================== 100% **** INFO: Done. Ran 12 tests. FAILED (failures=5) tail -n 1 dev_test.log | grep -q 'OK' make[2]: *** [Makefile:231: fast-check] Error 1 make[2]: Leaving directory '/<>/gemma-0.98.1+dfsg' dh_auto_test: make -j1 check returned exit code 2 make[1]: *** [debian/rules:22: override_dh_auto_test] Error 255 make[1]: Leaving directory '/<>/gemma-0.98.1+dfsg' make: *** [debian/rules:12: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1646 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 241800 Build-Time: 202 Distribution: focal Fail-Stage: build Host Architecture: armhf Install-Time: 22 Job: gemma_0.98.1+dfsg-1.dsc Machine Architecture: arm64 Package: gemma Package-Time: 234 Source-Version: 0.98.1+dfsg-1 Space: 241800 Status: attempted Version: 0.98.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 20200105-1646 Build needed 00:03:54, 241800k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18296621 Scanning for processes to kill in build PACKAGEBUILD-18296621