https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18308658 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-016 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:04 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 12:14:11 ntpdate[1907]: adjust time server 10.211.37.1 offset -0.000336 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18308658 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18308658 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18308658 Starting target for build PACKAGEBUILD-18308658 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18308658 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18308658 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18308658 Updating target for build PACKAGEBUILD-18308658 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [966 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted amd64 Packages [18.4 kB] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8671 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse amd64 Packages [152 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.9 MB in 4s (3744 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 94 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 70.2 MB of archives. After this operation, 51.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.30-0ubuntu3 [2549 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.30-0ubuntu3 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.3.0-24.26 [1096 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22-2 [592 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 9.2.1-21ubuntu1 [49.0 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.33.1-6ubuntu3 [1639 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.33.1-6ubuntu3 [474 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.33.1-6ubuntu3 [3400 B] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc1 amd64 1:9.2.1-21ubuntu1 [40.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 9.2.1-21ubuntu1 [89.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 9.2.1-21ubuntu1 [28.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 9.2.1-21ubuntu1 [9236 B] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.2.1-21ubuntu1 [395 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 9.2.1-21ubuntu1 [139 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 9.2.1-21ubuntu1 [301 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 9.2.1-21ubuntu1 [130 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 9.2.1-21ubuntu1 [146 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.2.1-21ubuntu1 [11.0 MB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.2.1-21ubuntu1 [1709 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.2.1-21ubuntu1 [2362 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.2.1-21ubuntu1 [10.4 MB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.2.1-21ubuntu1 [9729 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 9.2.1-21ubuntu1 [512 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.30-0ubuntu3 [2725 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu2 [60.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-5ubuntu1 [639 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu4 [63.8 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu4 [137 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu4 [20.5 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu4 [175 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libselinux1 amd64 3.0-1 [68.7 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu4 [149 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu4 [101 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu4 [120 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu4 [1022 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.250ubuntu2 [6336 B] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.30-0ubuntu3 [625 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-1ubuntu1 [20.8 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 244-3ubuntu1 [9368 B] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5ubuntu1 [18.7 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu1 [34.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1 [11.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu5 [39.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.27-1 [14.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 244-3ubuntu1 [76.3 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu7 [127 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-6 [29.2 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-1ubuntu1 [182 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.18.1-2 [189 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.15.0-2 [37.7 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2 [793 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 26-3ubuntu1 [42.9 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.2-2ubuntu1 [39.4 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu4 [115 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 244-3ubuntu1 [3677 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 244-3ubuntu1 [260 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.5 [851 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-3ubuntu1 [419 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 1.9.5 [1281 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1 [9880 B] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1 [85.3 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.30.1-1ubuntu1 [540 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.2 MB in 1s (59.6 MB/s) (Reading database ... 12741 files and directories currently installed.) 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Setting up libtsan0:amd64 (9.2.1-21ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils (2.33.1-6ubuntu3) ... Setting up libgcc-9-dev:amd64 (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:amd64 (2.30-0ubuntu3) ... Setting up libcryptsetup12:amd64 (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18308658 amd64 focal -c chroot:build-PACKAGEBUILD-18308658 --arch=amd64 --dist=focal --nolog -A igdiscover_0.11-3.dsc Initiating build PACKAGEBUILD-18308658 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:04 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-016.buildd +==============================================================================+ | igdiscover 0.11-3 (amd64) 05 Jan 2020 12:14 | +==============================================================================+ Package: igdiscover Version: 0.11-3 Source Version: 0.11-3 Distribution: focal Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/igdiscover-3WoRzn/igdiscover-0.11' with '<>' I: NOTICE: Log filtering will replace 'build/igdiscover-3WoRzn' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18308658/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- igdiscover_0.11-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-GVf0qD/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-GVf0qD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GVf0qD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-GVf0qD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GVf0qD/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-GVf0qD/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (232 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-GVf0qD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14652 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-sqt, python3-pandas (>= 0.16.2), python3-numpy, python3-matplotlib (>= 1.5.0), python3-cutadapt, python3-scipy (>= 0.16.1), python3-xopen (>= 0.3.2), python3-ruamel.yaml, python3-pytest, snakemake, python3-sphinx Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-sqt, python3-pandas (>= 0.16.2), python3-numpy, python3-matplotlib (>= 1.5.0), python3-cutadapt, python3-scipy (>= 0.16.1), python3-xopen (>= 0.3.2), python3-ruamel.yaml, python3-pytest, snakemake, python3-sphinx dpkg-deb: building package 'sbuild-build-depends-igdiscover-dummy' in '/<>/resolver-8fNhmN/apt_archive/sbuild-build-depends-igdiscover-dummy.deb'. Ign:1 copy:/<>/resolver-8fNhmN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8fNhmN/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8fNhmN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8fNhmN/apt_archive ./ Sources [335 B] Get:5 copy:/<>/resolver-8fNhmN/apt_archive ./ Packages [648 B] Fetched 3102 B in 0s (241 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install igdiscover build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-lyx fonts-mathjax fonts-roboto-slab gettext gettext-base git git-man graphviz groff-base intltool-debian libann0 libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libelf1 liberror-perl libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-d3 libjs-jquery libjs-jquery-ui libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support pigz po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-appdirs python3-atomicwrites python3-attr python3-babel python3-certifi python3-cffi-backend python3-chardet python3-commonmark-bkrs python3-configargparse python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-distutils python3-dnaio python3-docutils python3-git python3-gitdb python3-idna python3-imagesize python3-importlib-metadata python3-jinja2 python3-jsonschema python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-ruamel.yaml python3-scipy python3-seaborn python3-setuptools python3-simplegeneric python3-six python3-smmap python3-sphinx python3-sqt python3-tk python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-wrapt python3-xopen python3-yaml python3-zipp python3.7 python3.7-minimal python3.8 python3.8-minimal r-base-core sgml-base snakemake sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo wamerican | wordlist whois vacation dh-make fonts-roboto gettext-doc libasprintf-dev libgettextpo-dev git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gsfonts graphviz-doc groff libgd-tools krb5-doc krb5-user libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv python-attr-doc python-commonmark-bkrs-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-git-doc python-jinja2-doc python-jsonschema-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt4 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python3-gdal python-networkx-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pandas-doc python3-statsmodels python-psutil-doc subversion python-pygments-doc python-pygraphviz-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-rpy-docs python-scipy-doc python-setuptools-doc imagemagick-6.q16 latexmk python3-sphinx-rtd-theme python3-stemmer sphinx-doc texlive-fonts-recommended texlive-plain-generic tix python3-tk-dbg python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html sgml-base-doc Recommended packages: curl | wget | lynx less ssh-client fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pil python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-patsy fonts-noto-color-emoji r-recommended r-base-dev r-doc-html cwltool python3-biopython python3-boto python3-botocore python3-dropbox python3-flask r-cran-rmarkdown imagemagick libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-lyx fonts-mathjax fonts-roboto-slab gettext gettext-base git git-man graphviz groff-base intltool-debian libann0 libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libelf1 liberror-perl libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-d3 libjs-jquery libjs-jquery-ui libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db mime-support pigz po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-appdirs python3-atomicwrites python3-attr python3-babel python3-certifi python3-cffi-backend python3-chardet python3-commonmark-bkrs python3-configargparse python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-distutils python3-dnaio python3-docutils python3-git python3-gitdb python3-idna python3-imagesize python3-importlib-metadata python3-jinja2 python3-jsonschema python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-ruamel.yaml python3-scipy python3-seaborn python3-setuptools python3-simplegeneric python3-six python3-smmap python3-sphinx python3-sqt python3-tk python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-wrapt python3-xopen python3-yaml python3-zipp python3.7 python3.7-minimal python3.8 python3.8-minimal r-base-core sbuild-build-depends-igdiscover-dummy sgml-base snakemake sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 235 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB of archives. After this operation, 590 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8fNhmN/apt_archive ./ sbuild-build-depends-igdiscover-dummy 0.invalid.0 [976 B] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libpython3.7-minimal amd64 3.7.5-2 [545 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1 amd64 2.2.9-1 [73.3 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 python3.7-minimal amd64 3.7.5-2 [1766 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 python3-minimal amd64 3.7.5-1ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libpython3.7-stdlib amd64 3.7.5-2 [1732 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 python3.7 amd64 3.7.5-2 [301 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 libpython3-stdlib amd64 3.7.5-1ubuntu1 [6844 B] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 python3 amd64 3.7.5-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 groff-base amd64 1.22.4-4 [865 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 libpipeline1 amd64 1.5.1-3 [27.4 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 man-db amd64 2.9.0-2 [1114 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libpython3.8-minimal amd64 3.8.0-5 [703 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 python3.8-minimal amd64 3.8.0-5 [1890 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 sgml-base all 1.29.1 [12.4 kB] Get:22 http://ftpmaster.internal/ubuntu focal/universe amd64 pigz amd64 2.4-1 [57.4 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.37-6 [209 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic1 amd64 1:5.37-6 [75.3 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.37-6 [23.2 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1 [44.1 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libfribidi0 amd64 1.0.7-1.1 [23.6 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libglib2.0-0 amd64 2.63.3-1 [1279 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 libicu63 amd64 63.2-2 [8294 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libxml2 amd64 2.9.4+dfsg1-8ubuntu1 [648 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libyaml-0-2 amd64 0.2.2-1 [48.9 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 python3-cffi-backend amd64 1.13.2-1 [86.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 python3-pkg-resources all 41.4.0-1 [100 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 python3-six all 1.12.0-2build1 [11.7 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 python3-yaml amd64 5.1.2-1build1 [202 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 ucf all 3.0038+nmu1 [51.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 gettext-base amd64 0.19.8.1-10 [50.2 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5support0 amd64 1.17-6 [31.4 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libk5crypto3 amd64 1.17-6 [80.2 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libkeyutils1 amd64 1.6-6ubuntu1 [10.2 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-3 amd64 1.17-6 [330 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi-krb5-2 amd64 1.17-6 [121 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb1 amd64 1.13.1-2 [45.2 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-data all 2:1.6.8-1 [113 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-6 amd64 2:1.6.8-1 [573 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 autoconf all 2.69-11ubuntu1 [321 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 autopoint all 0.19.8.1-10 [412 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libtcl8.6 amd64 8.6.10+dfsg-1 [902 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB] Get:58 http://ftpmaster.internal/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu2 [114 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libxft2 amd64 2.3.3-0ubuntu1 [39.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libtk8.6 amd64 8.6.10-1 [714 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-11 [194 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-1 [90.4 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-5 [151 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10 [897 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.7.1ubuntu1 [875 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 python3-distutils all 3.8.0-1 [142 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 dh-python all 4.20191017ubuntu1 [88.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 docutils-common all 0.15.2+dfsg-1 [156 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig amd64 2.13.1-2ubuntu2 [171 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [514 kB] Get:88 http://ftpmaster.internal/ubuntu focal/universe amd64 fonts-lyx all 2.3.3-2 [154 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe amd64 fonts-mathjax all 2.7.4+dfsg-1 [2208 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-roboto-slab all 1.100263+20170512-2 [166 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libbrotli1 amd64 1.0.7-5 [265 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-1 [41.9 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-1 [181 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-1 [29.7 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-1 [87.8 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-1 [47.9 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-1 [107 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-1 [207 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-1 [15.1 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-1 [96.6 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [14.9 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [49.3 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1ubuntu3 [155 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libnghttp2-14 amd64 1.40.0-1 [78.1 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.0-1ubuntu5 [196 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl3-gnutls amd64 7.66.0-1ubuntu1 [231 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 liberror-perl all 0.17028-1 [26.6 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main amd64 git-man all 1:2.24.0-1ubuntu1 [868 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 git amd64 1:2.24.0-1ubuntu1 [4504 kB] Get:112 http://ftpmaster.internal/ubuntu focal/universe amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:113 http://ftpmaster.internal/ubuntu focal/universe amd64 libcdt5 amd64 2.42.2-3 [18.7 kB] Get:114 http://ftpmaster.internal/ubuntu focal/universe amd64 libcgraph6 amd64 2.42.2-3 [41.3 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 libtiff5 amd64 4.1.0+git191117-1 [162 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 libgd3 amd64 2.2.5-5.2 [118 kB] Get:122 http://ftpmaster.internal/ubuntu focal/universe amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [150 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-render0 amd64 1.13.1-2 [14.8 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-shm0 amd64 1.13.1-2 [5548 B] Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 libltdl7 amd64 2.4.6-11 [38.3 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 libgraphite2-3 amd64 1.3.13-11 [73.7 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 libharfbuzz0b amd64 2.6.4-1ubuntu1 [391 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 libthai-data all 0.1.28-3 [134 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main amd64 libdatrie1 amd64 0.2.12-3 [18.7 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main amd64 libthai0 amd64 0.1.28-3 [18.1 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main amd64 libpango-1.0-0 amd64 1.44.7-1 [161 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main amd64 libpangoft2-1.0-0 amd64 1.44.7-1 [34.7 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main amd64 libpangocairo-1.0-0 amd64 1.44.7-1 [24.8 kB] Get:136 http://ftpmaster.internal/ubuntu focal/universe amd64 libpathplan4 amd64 2.42.2-3 [21.9 kB] Get:137 http://ftpmaster.internal/ubuntu focal/universe amd64 libgvc6 amd64 2.42.2-3 [648 kB] Get:138 http://ftpmaster.internal/ubuntu focal/universe amd64 libgvpr2 amd64 2.42.2-3 [167 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe amd64 liblab-gamut1 amd64 2.42.2-3 [177 kB] Get:140 http://ftpmaster.internal/ubuntu focal/main amd64 libice6 amd64 2:1.0.10-0ubuntu1 [41.0 kB] Get:141 http://ftpmaster.internal/ubuntu focal/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:143 http://ftpmaster.internal/ubuntu focal/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu1 [45.8 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe amd64 graphviz amd64 2.42.2-3 [599 kB] Get:146 http://ftpmaster.internal/ubuntu focal/main amd64 libblas3 amd64 3.9.0-1 [142 kB] Get:147 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4 amd64 7.66.0-1ubuntu1 [232 kB] Get:148 http://ftpmaster.internal/ubuntu focal/universe amd64 libdeflate0 amd64 1.5-1 [87.2 kB] Get:149 http://ftpmaster.internal/ubuntu focal/main amd64 libgfortran5 amd64 9.2.1-21ubuntu1 [642 kB] Get:150 http://ftpmaster.internal/ubuntu focal/universe amd64 libhts2 amd64 1.9-12 [313 kB] Get:151 http://ftpmaster.internal/ubuntu focal/universe amd64 libjs-d3 all 3.5.17-2 [131 kB] Get:152 http://ftpmaster.internal/ubuntu focal/main amd64 libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:153 http://ftpmaster.internal/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:154 http://ftpmaster.internal/ubuntu focal/main amd64 libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:155 http://ftpmaster.internal/ubuntu focal/main amd64 libjs-sphinxdoc all 1.8.5-4 [96.7 kB] Get:156 http://ftpmaster.internal/ubuntu focal/main amd64 liblapack3 amd64 3.9.0-1 [2155 kB] Get:157 http://ftpmaster.internal/ubuntu focal/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-7 [29.4 kB] Get:158 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:159 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:160 http://ftpmaster.internal/ubuntu focal/main amd64 libpython3.8-stdlib amd64 3.8.0-5 [1663 kB] Get:161 http://ftpmaster.internal/ubuntu focal/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:162 http://ftpmaster.internal/ubuntu focal/universe amd64 python-matplotlib-data all 3.0.2-2ubuntu1 [3775 kB] Get:163 http://ftpmaster.internal/ubuntu focal/main amd64 python3.8 amd64 3.8.0-5 [355 kB] Get:164 http://ftpmaster.internal/ubuntu focal/main amd64 python3-all amd64 3.7.5-1ubuntu1 [1120 B] Get:165 http://ftpmaster.internal/ubuntu focal/main amd64 python3-appdirs all 1.4.3-1build1 [10.6 kB] Get:166 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-atomicwrites all 1.1.5-2build1 [7016 B] Get:167 http://ftpmaster.internal/ubuntu focal/main amd64 python3-attr all 18.2.0-1build1 [29.7 kB] Get:168 http://ftpmaster.internal/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] Get:169 http://ftpmaster.internal/ubuntu focal/main amd64 python3-babel all 2.6.0+dfsg.1-1 [83.4 kB] Get:170 http://ftpmaster.internal/ubuntu focal/main amd64 python3-certifi all 2019.11.28-1 [149 kB] Get:171 http://ftpmaster.internal/ubuntu focal/main amd64 python3-chardet all 3.0.4-4 [80.6 kB] Get:172 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-commonmark-bkrs all 0.5.4+ds-4 [29.6 kB] Get:173 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-configargparse all 0.13.0-2 [22.6 kB] Get:174 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-xopen all 0.8.4-1 [9524 B] Get:175 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-dnaio amd64 0.4.1-1 [105 kB] Get:176 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-cutadapt amd64 2.7-2 [116 kB] Get:177 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-cycler all 0.10.0-2 [8024 B] Get:178 http://ftpmaster.internal/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3 [63.3 kB] Get:179 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-datrie amd64 0.7.1-3ubuntu1 [191 kB] Get:180 http://ftpmaster.internal/ubuntu focal/main amd64 python3-decorator all 4.3.0-1.1build1 [9652 B] Get:181 http://ftpmaster.internal/ubuntu focal/main amd64 python3-roman all 2.0.0-3build1 [8728 B] Get:182 http://ftpmaster.internal/ubuntu focal/main amd64 python3-docutils all 0.15.2+dfsg-1 [366 kB] Get:183 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-smmap all 2.0.5-2 [21.2 kB] Get:184 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-gitdb all 2.0.6-2 [46.6 kB] Get:185 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-git all 3.0.5-1 [305 kB] Get:186 http://ftpmaster.internal/ubuntu focal/main amd64 python3-idna all 2.6-2build1 [32.8 kB] Get:187 http://ftpmaster.internal/ubuntu focal/main amd64 python3-imagesize all 1.2.0-1 [5808 B] Get:188 http://ftpmaster.internal/ubuntu focal/main amd64 python3-more-itertools all 4.2.0-1build1 [39.4 kB] Get:189 http://ftpmaster.internal/ubuntu focal/main amd64 python3-zipp all 0.6.0-1 [5260 B] Get:190 http://ftpmaster.internal/ubuntu focal/main amd64 python3-importlib-metadata all 0.23-2ubuntu1 [9492 B] Get:191 http://ftpmaster.internal/ubuntu focal/main amd64 python3-markupsafe amd64 1.1.0-1build1 [14.5 kB] Get:192 http://ftpmaster.internal/ubuntu focal/main amd64 python3-jinja2 all 2.10-2ubuntu2 [95.5 kB] Get:193 http://ftpmaster.internal/ubuntu focal/main amd64 python3-jsonschema all 2.6.0-4ubuntu2 [31.1 kB] Get:194 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-2build3 [86.7 kB] Get:195 http://ftpmaster.internal/ubuntu focal/main amd64 python3-pyparsing all 2.4.2-1 [58.8 kB] Get:196 http://ftpmaster.internal/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-3ubuntu2 [6135 kB] Get:197 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-matplotlib amd64 3.0.2-2ubuntu1 [4601 kB] Get:198 http://ftpmaster.internal/ubuntu focal/main amd64 python3-networkx all 2.2-1ubuntu4 [800 kB] Get:199 http://ftpmaster.internal/ubuntu focal/main amd64 python3-packaging all 19.1-2 [21.7 kB] Get:200 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pandas-lib amd64 0.25.3+dfsg-4 [8384 kB] Get:201 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pandas all 0.25.3+dfsg-4 [1967 kB] Get:202 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pluggy all 0.13.0-2 [18.4 kB] Get:203 http://ftpmaster.internal/ubuntu focal/main amd64 python3-psutil amd64 5.5.1-1ubuntu1 [144 kB] Get:204 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-py all 1.8.0-1 [65.3 kB] Get:205 http://ftpmaster.internal/ubuntu focal/main amd64 python3-pygments all 2.3.1+dfsg-1ubuntu2 [579 kB] Get:206 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pygraphviz amd64 1.5-1build1 [77.0 kB] Get:207 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pysam amd64 0.15.2+ds-2build1 [2729 kB] Get:208 http://ftpmaster.internal/ubuntu focal/main amd64 python3-wcwidth all 0.1.7+dfsg1-6build1 [15.4 kB] Get:209 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pytest all 4.6.6-1ubuntu4 [177 kB] Get:210 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pytools all 2019.1.1-2 [38.1 kB] Get:211 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5548 B] Get:212 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-recommonmark all 0.4.0+ds-6 [15.0 kB] Get:213 http://ftpmaster.internal/ubuntu focal/main amd64 python3-urllib3 all 1.24.1-1ubuntu2 [83.9 kB] Get:214 http://ftpmaster.internal/ubuntu focal/main amd64 python3-requests all 2.21.0-1 [46.8 kB] Get:215 http://ftpmaster.internal/ubuntu focal/main amd64 python3-simplegeneric all 0.8.1-2build1 [11.3 kB] Get:216 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-tzlocal all 2.0.0b2-3 [15.6 kB] Get:217 http://ftpmaster.internal/ubuntu focal/main amd64 zip amd64 3.0-11build1 [167 kB] Get:218 http://ftpmaster.internal/ubuntu focal/main amd64 unzip amd64 6.0-25ubuntu1 [169 kB] Get:219 http://ftpmaster.internal/ubuntu focal/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:220 http://ftpmaster.internal/ubuntu focal/universe amd64 r-base-core amd64 3.6.1-7 [24.5 MB] Get:221 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-rpy2 amd64 3.2.4-1 [166 kB] Get:222 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-ruamel.yaml amd64 0.15.89-3 [298 kB] Get:223 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-scipy amd64 1.3.2-0ubuntu1 [13.6 MB] Get:224 http://ftpmaster.internal/ubuntu focal/main amd64 python3-tk amd64 3.8.0-1 [110 kB] Get:225 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-seaborn all 0.9.0-2 [158 kB] Get:226 http://ftpmaster.internal/ubuntu focal/main amd64 python3-setuptools all 41.4.0-1 [255 kB] Get:227 http://ftpmaster.internal/ubuntu focal/main amd64 sphinx-common all 1.8.5-4 [492 kB] Get:228 http://ftpmaster.internal/ubuntu focal/main amd64 python3-alabaster all 0.7.8-1build1 [18.7 kB] Get:229 http://ftpmaster.internal/ubuntu focal/main amd64 python3-sphinx all 1.8.5-4 [482 kB] Get:230 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-sqt amd64 0.8.0-3 [125 kB] Get:231 http://ftpmaster.internal/ubuntu focal/main amd64 python3-wrapt amd64 1.11.2-2 [35.0 kB] Get:232 http://ftpmaster.internal/ubuntu focal/main amd64 libjs-modernizr all 2.6.2+ds1-3ubuntu1 [46.2 kB] Get:233 http://ftpmaster.internal/ubuntu focal/main amd64 sphinx-rtd-theme-common all 0.4.3+dfsg-1 [1019 kB] Get:234 http://ftpmaster.internal/ubuntu focal/universe amd64 libjs-mathjax all 2.7.4+dfsg-1 [5654 kB] Get:235 http://ftpmaster.internal/ubuntu focal/universe amd64 snakemake all 5.9.1-1 [1557 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 139 MB in 10s (14.1 MB/s) Selecting previously unselected package libpython3.7-minimal:amd64. (Reading database ... 14652 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.5-2_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.5-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.5-2_amd64.deb ... Unpacking python3.7-minimal (3.7.5-2) ... Setting up libpython3.7-minimal:amd64 (3.7.5-2) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up python3.7-minimal (3.7.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14901 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_amd64.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up sphinx-rtd-theme-common (0.4.3+dfsg-1) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libpython3.7-stdlib:amd64 (3.7.5-2) ... Setting up liblapack3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-4) ... Setting up libssh-4:amd64 (0.9.0-1ubuntu5) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up libgvpr2:amd64 (2.42.2-3) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libtiff5:amd64 (4.1.0+git191117-1) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.7.5-1ubuntu1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.5-2) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libpango-1.0-0:amd64 (1.44.7-1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (1.1.0-1build1) ... Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up python3-psutil (5.5.1-1ubuntu1) ... Setting up python3-tz (2019.3-1) ... Setting up python3-atomicwrites (1.1.5-2build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-six (1.12.0-2build1) ... Setting up python3-roman (2.0.0-3build1) ... Setting up python3-decorator (4.3.0-1.1build1) ... Setting up python3-jinja2 (2.10-2ubuntu2) ... Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... Setting up python3-wcwidth (0.1.7+dfsg1-6build1) ... Setting up python3-pyparsing (2.4.2-1) ... Setting up python3-certifi (2019.11.28-1) ... Setting up sphinx-common (1.8.5-4) ... Setting up python3-cycler (0.10.0-2) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up python3-idna (2.6-2build1) ... Setting up python3-wrapt (1.11.2-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up python3-urllib3 (1.24.1-1ubuntu2) ... Setting up python3-ruamel.yaml (0.15.89-3) ... Setting up python3-commonmark-bkrs (0.5.4+ds-4) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up python3-datrie:amd64 (0.7.1-3ubuntu1) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-1) ... Setting up python3-tzlocal (2.0.0b2-3) ... /usr/lib/python3/dist-packages/tzlocal/unix.py:140: SyntaxWarning: "is not" with a literal. Did you mean "!="? while start is not 0: Setting up python3-simplegeneric (0.8.1-2build1) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up python3-appdirs (1.4.3-1build1) ... Setting up python3-smmap (2.0.5-2) ... Setting up python3-cffi-backend (1.13.2-1) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-1) ... Setting up python3-imagesize (1.2.0-1) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-pkg-resources (41.4.0-1) ... Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu1) ... Setting up python3-more-itertools (4.2.0-1build1) ... Setting up python3-configargparse (0.13.0-2) ... Setting up python3-attr (18.2.0-1build1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu1) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Setting up python3-setuptools (41.4.0-1) ... Setting up python3-py (1.8.0-1) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1build1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.10-1) ... Setting up python3-all (3.7.5-1ubuntu1) ... Setting up python3-yaml (5.1.2-1build1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up python3-gitdb (2.0.6-2) ... Setting up python3-zipp (0.6.0-1) ... Setting up python3-networkx (2.2-1ubuntu4) ... /usr/lib/python3/dist-packages/networkx/convert_matrix.py:567: SyntaxWarning: "is" with a literal. Did you mean "=="? if python_type is 'void': /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:210: SyntaxWarning: "is" with a literal. Did you mean "=="? if name is '': Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-xopen (0.8.4-1) ... Setting up python3-packaging (19.1-2) ... Setting up python3-chardet (3.0.4-4) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-jsonschema (2.6.0-4ubuntu2) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-requests (2.21.0-1) ... Setting up python3-kiwisolver (1.0.1-2build3) ... Setting up libgvc6 (2.42.2-3) ... Setting up python3-numpy (1:1.17.4-3ubuntu2) ... Setting up python3-dnaio (0.4.1-1) ... Setting up graphviz (2.42.2-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.0.2-2ubuntu1) ... /usr/lib/python3/dist-packages/matplotlib/backends/qt_editor/figureoptions.py:220: SyntaxWarning: "is not" with a literal. Did you mean "!="? if marker is not 'none': /usr/lib/python3/dist-packages/matplotlib/pyplot.py:2201: SyntaxWarning: "is" with a literal. Did you mean "=="? if fignum is False or fignum is 0: Setting up python3-scipy (1.3.2-0ubuntu1) ... /usr/lib/python3/dist-packages/scipy/optimize/_shgo.py:495: SyntaxWarning: "is" with a literal. Did you mean "=="? if cons['type'] is 'ineq': /usr/lib/python3/dist-packages/scipy/optimize/_shgo.py:743: SyntaxWarning: "is not" with a literal. Did you mean "!="? if len(self.X_min) is not 0: Setting up python3-importlib-metadata (0.23-2ubuntu1) ... Setting up blt (2.5.3+dfsg-4) ... Setting up python3-pandas-lib (0.25.3+dfsg-4) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1ubuntu3) ... Setting up python3-tk:amd64 (3.8.0-1) ... Setting up libcurl3-gnutls:amd64 (7.66.0-1ubuntu1) ... Setting up python3-pandas (0.25.3+dfsg-4) ... /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 Setting up python3-cutadapt (2.7-2) ... Setting up git (1:2.24.0-1ubuntu1) ... Setting up python3-pytools (2019.1.1-2) ... Setting up python3-pluggy (0.13.0-2) ... Setting up python3-pygraphviz (1.5-1build1) ... Setting up libcurl4:amd64 (7.66.0-1ubuntu1) ... Setting up libhts2:amd64 (1.9-12) ... Setting up python3-pytest (4.6.6-1ubuntu4) ... Setting up python3-seaborn (0.9.0-2) ... /usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:415: SyntaxWarning: "is" with a literal. Did you mean "=="? assert p.hue_type is "categorical" /usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:455: SyntaxWarning: "is" with a literal. Did you mean "=="? assert p.hue_type is "categorical" /usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:475: SyntaxWarning: "is" with a literal. Did you mean "=="? assert p.hue_type is "categorical" /usr/lib/python3/dist-packages/seaborn/tests/test_relational.py:482: SyntaxWarning: "is" with a literal. Did you mean "=="? assert p.hue_type is "numeric" Setting up python3-git (3.0.5-1) ... Setting up r-base-core (3.6.1-7) ... Creating config file /etc/R/Renviron with new version Setting up python3-rpy2 (3.2.4-1) ... Setting up python3-pysam (0.15.2+ds-2build1) ... Setting up python3-sqt (0.8.0-3) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244-3ubuntu1) ... Processing triggers for sgml-base (1.29.1) ... Setting up docutils-common (0.15.2+dfsg-1) ... Processing triggers for sgml-base (1.29.1) ... Setting up python3-docutils (0.15.2+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-6) ... Setting up snakemake (5.9.1-1) ... Setting up python3-sphinx (1.8.5-4) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up sbuild-build-depends-igdiscover-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic amd64 (x86_64) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-x86-64-linux-gnu_2.33.1-6ubuntu3 blt_2.5.3+dfsg-4 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu1 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 docutils-common_0.15.2+dfsg-1 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-1 fonts-lato_2.0-2 fonts-lyx_2.3.3-2 fonts-mathjax_2.7.4+dfsg-1 fonts-roboto-slab_1.100263+20170512-2 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 git_1:2.24.0-1ubuntu1 git-man_1:2.24.0-1ubuntu1 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 graphviz_2.42.2-3 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libann0_1.1.2+doc-7 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.1-6ubuntu3 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu4 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcairo2_1.16.0-4ubuntu1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcdt5_2.42.2-3 libcgraph6_2.42.2-3 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libcurl3-gnutls_7.66.0-1ubuntu1 libcurl4_7.66.0-1ubuntu1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdeflate0_1.5-1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 liberror-perl_0.17028-1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.10.1-2 libfribidi0_1.0.7-1.1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgd3_2.2.5-5.2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-21ubuntu1 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6 libgssapi3-heimdal_7.7.0+dfsg-1 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.42.2-3 libgvpr2_2.42.2-3 libharfbuzz0b_2.6.4-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts2_1.9-12 libhx509-5-heimdal_7.7.0+dfsg-1 libice6_2:1.0.10-0ubuntu1 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-d3_3.5.17-2 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjs-mathjax_2.7.4+dfsg-1 libjs-modernizr_2.6.2+ds1-3ubuntu1 libjs-sphinxdoc_1.8.5-4 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblab-gamut1_2.42.2-3 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 libldap-2.4-2_2.4.48+dfsg-1ubuntu3 libldap-common_2.4.48+dfsg-1ubuntu3 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_9.2.1-21ubuntu1 libltdl7_2.4.6-11 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpango-1.0-0_1.44.7-1 libpangocairo-1.0-0_1.44.7-1 libpangoft2-1.0-0_1.44.7-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpathplan4_2.42.2-3 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpixman-1-0_0.38.4-0ubuntu1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libpython3-stdlib_3.7.5-1ubuntu1 libpython3.7-minimal_3.7.5-2 libpython3.7-stdlib_3.7.5-2 libpython3.8-minimal_3.8.0-5 libpython3.8-stdlib_3.8.0-5 libquadmath0_9.2.1-21ubuntu1 libreadline8_8.0-3 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssh-4_0.9.0-1ubuntu5 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-1 libtinfo6_6.1+20191019-1ubuntu1 libtk8.6_8.6.10-1 libtool_2.4.6-11 libtsan0_9.2.1-21ubuntu1 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxaw7_2:1.0.13-1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.4+dfsg1-8ubuntu1 libxmu6_2:1.1.3-0ubuntu1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libyaml-0-2_0.2.2-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pigz_2.4-1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python-babel-localedata_2.6.0+dfsg.1-1 python-matplotlib-data_3.0.2-2ubuntu1 python3_3.7.5-1ubuntu1 python3-alabaster_0.7.8-1build1 python3-all_3.7.5-1ubuntu1 python3-appdirs_1.4.3-1build1 python3-atomicwrites_1.1.5-2build1 python3-attr_18.2.0-1build1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2019.11.28-1 python3-cffi-backend_1.13.2-1 python3-chardet_3.0.4-4 python3-commonmark-bkrs_0.5.4+ds-4 python3-configargparse_0.13.0-2 python3-cutadapt_2.7-2 python3-cycler_0.10.0-2 python3-dateutil_2.7.3-3 python3-datrie_0.7.1-3ubuntu1 python3-decorator_4.3.0-1.1build1 python3-distutils_3.8.0-1 python3-dnaio_0.4.1-1 python3-docutils_0.15.2+dfsg-1 python3-git_3.0.5-1 python3-gitdb_2.0.6-2 python3-idna_2.6-2build1 python3-imagesize_1.2.0-1 python3-importlib-metadata_0.23-2ubuntu1 python3-jinja2_2.10-2ubuntu2 python3-jsonschema_2.6.0-4ubuntu2 python3-kiwisolver_1.0.1-2build3 python3-lib2to3_3.8.0-1 python3-markupsafe_1.1.0-1build1 python3-matplotlib_3.0.2-2ubuntu1 python3-minimal_3.7.5-1ubuntu1 python3-more-itertools_4.2.0-1build1 python3-networkx_2.2-1ubuntu4 python3-numpy_1:1.17.4-3ubuntu2 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_41.4.0-1 python3-pluggy_0.13.0-2 python3-psutil_5.5.1-1ubuntu1 python3-py_1.8.0-1 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pygraphviz_1.5-1build1 python3-pyparsing_2.4.2-1 python3-pysam_0.15.2+ds-2build1 python3-pytest_4.6.6-1ubuntu4 python3-pytools_2019.1.1-2 python3-ratelimiter_1.2.0.post0-1 python3-recommonmark_0.4.0+ds-6 python3-requests_2.21.0-1 python3-roman_2.0.0-3build1 python3-rpy2_3.2.4-1 python3-ruamel.yaml_0.15.89-3 python3-scipy_1.3.2-0ubuntu1 python3-seaborn_0.9.0-2 python3-setuptools_41.4.0-1 python3-simplegeneric_0.8.1-2build1 python3-six_1.12.0-2build1 python3-smmap_2.0.5-2 python3-sphinx_1.8.5-4 python3-sqt_0.8.0-3 python3-tk_3.8.0-1 python3-tz_2019.3-1 python3-tzlocal_2.0.0b2-3 python3-urllib3_1.24.1-1ubuntu2 python3-wcwidth_0.1.7+dfsg1-6build1 python3-wrapt_1.11.2-2 python3-xopen_0.8.4-1 python3-yaml_5.1.2-1build1 python3-zipp_0.6.0-1 python3.7_3.7.5-2 python3.7-minimal_3.7.5-2 python3.8_3.8.0-5 python3.8-minimal_3.8.0-5 r-base-core_3.6.1-7 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-igdiscover-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 snakemake_5.9.1-1 sphinx-common_1.8.5-4 sphinx-rtd-theme-common_0.4.3+dfsg-1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tk8.6-blt2.5_2.5.3+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu4 x11-common_1:7.7+19ubuntu12 xdg-utils_1.1.3-1ubuntu2 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Sep 6 06:52:26 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./igdiscover_0.11-3.dsc dpkg-source: info: extracting igdiscover in igdiscover-0.11 dpkg-source: info: unpacking igdiscover_0.11.orig.tar.gz dpkg-source: info: unpacking igdiscover_0.11-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying minoverlap.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18308658 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18308658 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18308658 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package igdiscover dpkg-buildpackage: info: source version 0.11-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from igdiscover-0.11/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean pybuild --clean --test-pytest -i python{version} -p "3.8 3.7" I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.8_igdiscover/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_igdiscover/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf .pytest_cache debian/python3-igdiscover make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/igdiscover.substvars debian/igdiscover-doc.substvars debian/files rm -fr -- debian/igdiscover/ debian/tmp/ debian/igdiscover-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-pytest -i python{version} -p "3.8 3.7" I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build pybuild --build --test-pytest -i python{version} -p "3.8 3.7" I: pybuild base:217: /usr/bin/python3.8 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/igblast.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/commonv.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/clonotypes.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/dendrogram.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/rename.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/_version.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/utils.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/union.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/init.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/errorplot.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/multidiscover.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/config.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/trie.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/table.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/plotalleles.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/clusterplot.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/upstream.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/filter.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/parse.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/species.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/__init__.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/cluster.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/group.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/count.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/clonoquery.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/__main__.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/germlinefilter.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/discover.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/discoverj.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/run.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/haplotype.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/merge.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/dbdiff.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/dereplicate.py -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/igdiscover.yaml -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/Snakefile -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover copying igdiscover/empty.aux -> /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover UPDATING /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover/_version.py set /<>/.pybuild/cpython3_3.8_igdiscover/build/igdiscover/_version.py to '0.11' I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/igblast.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/commonv.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/clonotypes.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/dendrogram.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/rename.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/_version.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/utils.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/union.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/init.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/errorplot.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/multidiscover.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/config.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/trie.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/table.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/plotalleles.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/clusterplot.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/upstream.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/filter.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/parse.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/species.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/__init__.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/cluster.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/group.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/count.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/clonoquery.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/__main__.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/germlinefilter.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/discover.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/discoverj.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/run.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/haplotype.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/merge.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/dbdiff.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/dereplicate.py -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/igdiscover.yaml -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/Snakefile -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover copying igdiscover/empty.aux -> /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover UPDATING /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover/_version.py set /<>/.pybuild/cpython3_3.7_igdiscover/build/igdiscover/_version.py to '0.11' PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bhtml doc/ build/html # HTML generator Running Sphinx v1.8.5 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: 9 added, 0 changed, 0 removed reading sources... [ 11%] advanced reading sources... [ 22%] changes reading sources... [ 33%] develop reading sources... [ 44%] faq reading sources... [ 55%] guide reading sources... [ 66%] index reading sources... [ 77%] installation reading sources... [ 88%] manual-installation reading sources... [100%] testing looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 11%] advanced writing output... [ 22%] changes writing output... [ 33%] develop writing output... [ 44%] faq writing output... [ 55%] guide writing output... [ 66%] index writing output... [ 77%] installation writing output... [ 88%] manual-installation writing output... [100%] testing generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/<>/doc/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bman doc/ build/man # Manpage generator Running Sphinx v1.8.5 making output directory... building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: 9 added, 0 changed, 0 removed reading sources... [ 11%] advanced reading sources... [ 22%] changes reading sources... [ 33%] develop reading sources... [ 44%] faq reading sources... [ 55%] guide reading sources... [ 66%] index reading sources... [ 77%] installation reading sources... [ 88%] manual-installation reading sources... [100%] testing looking for now-outdated files... none found pickling environment... done checking consistency... done writing... igdiscover.1 { installation manual-installation testing guide faq advanced develop changes } build succeeded. The manual pages are in build/man. make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.8 3.7" I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_igdiscover/build; python3.8 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.8.0+, pytest-4.6.6, py-1.8.0, pluggy-0.13.0 rootdir: /<>, inifile: setup.cfg collected 5 items / 12 errors ==================================== ERRORS ==================================== _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_cluster.py _ tests/test_cluster.py:1: in from igdiscover.cluster import inner_nodes, hamming_single_linkage igdiscover/cluster.py:5: in from sqt.align import hamming_distance /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_cluster.py _ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_cluster.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_cluster.py:1: in from igdiscover.cluster import inner_nodes, hamming_single_linkage igdiscover/cluster.py:5: in from sqt.align import hamming_distance /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_merger.py _ tests/test_merger.py:7: in from igdiscover.discover import SiblingMerger, SiblingInfo igdiscover/discover.py:20: in from sqt.align import edit_distance /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_merger.py _ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_merger.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_merger.py:7: in from igdiscover.discover import SiblingMerger, SiblingInfo igdiscover/discover.py:20: in from sqt.align import edit_distance /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_parse.py __ tests/test_parse.py:3: in from igdiscover.parse import parse_header igdiscover/parse.py:18: in from sqt.dna import reverse_complement /usr/lib/python3/dist-packages/sqt/dna.py:12: in from sqt._helpers import nt_to_aa E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_parse.py __ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_parse.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_parse.py:3: in from igdiscover.parse import parse_header igdiscover/parse.py:18: in from sqt.dna import reverse_complement /usr/lib/python3/dist-packages/sqt/dna.py:12: in from sqt._helpers import nt_to_aa E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_species.py _ tests/test_species.py:2: in from igdiscover.species import find_cdr3 igdiscover/species.py:8: in from .utils import nt_to_aa igdiscover/utils.py:15: in from sqt.align import edit_distance, multialign, consensus, globalalign /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_species.py _ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_species.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_species.py:2: in from igdiscover.species import find_cdr3 igdiscover/species.py:8: in from .utils import nt_to_aa igdiscover/utils.py:15: in from sqt.align import edit_distance, multialign, consensus, globalalign /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' __ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_trie.py __ tests/test_trie.py:3: in from igdiscover.group import hamming_neighbors igdiscover/group.py:56: in from sqt.align import consensus /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' __ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_trie.py __ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_trie.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_trie.py:3: in from igdiscover.group import hamming_neighbors igdiscover/group.py:56: in from sqt.align import consensus /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_utils.py __ tests/test_utils.py:5: in from igdiscover.utils import (has_stop, validate_fasta, FastaValidationError, find_overlap, igdiscover/utils.py:15: in from sqt.align import edit_distance, multialign, consensus, globalalign /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' _ ERROR collecting .pybuild/cpython3_3.8_igdiscover/build/tests/test_utils.py __ ImportError while importing test module '/<>/.pybuild/cpython3_3.8_igdiscover/build/tests/test_utils.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: tests/test_utils.py:5: in from igdiscover.utils import (has_stop, validate_fasta, FastaValidationError, find_overlap, igdiscover/utils.py:15: in from sqt.align import edit_distance, multialign, consensus, globalalign /usr/lib/python3/dist-packages/sqt/align.py:8: in from sqt._helpers import globalalign, hamming_distance E ModuleNotFoundError: No module named 'sqt._helpers' !!!!!!!!!!!!!!!!!!! Interrupted: 12 errors during collection !!!!!!!!!!!!!!!!!!! =========================== 12 error in 3.54 seconds =========================== E: pybuild pybuild:341: test: plugin distutils failed with: exit code=2: cd /<>/.pybuild/cpython3_3.8_igdiscover/build; python3.8 -m pytest tests dh_auto_test: pybuild --test --test-pytest -i python{version} -p "3.8 3.7" returned exit code 13 make: *** [debian/rules:8: build] Error 255 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1218 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 4332 Build-Time: 13 Distribution: focal Fail-Stage: build Host Architecture: amd64 Install-Time: 177 Job: igdiscover_0.11-3.dsc Machine Architecture: amd64 Package: igdiscover Package-Time: 192 Source-Version: 0.11-3 Space: 4332 Status: attempted Version: 0.11-3 -------------------------------------------------------------------------------- Finished at 20200105-1218 Build needed 00:03:12, 4332k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18308658 Scanning for processes to kill in build PACKAGEBUILD-18308658