https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18314849 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-020 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 12:12:41 ntpdate[1846]: adjust time server 10.211.37.1 offset 0.003599 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18314849 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18314849 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18314849 Starting target for build PACKAGEBUILD-18314849 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18314849 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18314849 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18314849 Updating target for build PACKAGEBUILD-18314849 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x Packages [916 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted s390x Packages [1288 B] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8337 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse s390x Packages [119 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.4 MB in 3s (4892 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 91 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.3.0-24.26 [1094 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22-2 [546 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x libcc1-0 s390x 9.2.1-21ubuntu1 [46.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-6ubuntu3 [1468 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-6ubuntu3 [301 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-6ubuntu3 [3328 B] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libgcc1 s390x 1:9.2.1-21ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libgomp1 s390x 9.2.1-21ubuntu1 [83.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libitm1 s390x 9.2.1-21ubuntu1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libatomic1 s390x 9.2.1-21ubuntu1 [8264 B] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libubsan1 s390x 9.2.1-21ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++6 s390x 9.2.1-21ubuntu1 [504 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu2 [60.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu4 [61.5 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu4 [128 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu4 [20.5 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu4 [160 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 3.0-1 [65.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu4 [137 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu4 [93.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu4 [113 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu4 [981 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu2 [6152 B] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 244-3ubuntu1 [9364 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5ubuntu1 [18.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu1 [33.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu5 [37.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 244-3ubuntu1 [71.8 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2 [684 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.2-2ubuntu1 [38.6 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu4 [110 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 244-3ubuntu1 [3325 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 244-3ubuntu1 [239 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.5 [789 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x apt s390x 1.9.5 [1242 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 3.0-1 [9880 B] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 3.0-1 [80.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1ubuntu1 [504 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 1s (49.4 MB/s) (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu3_s390x.deb ... Unpacking libc6-dev:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu3_s390x.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../2-linux-libc-dev_5.3.0-24.26_s390x.deb ... Unpacking linux-libc-dev:s390x (5.3.0-24.26) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:s390x. Preparing to unpack .../3-libisl22_0.22-2_s390x.deb ... Unpacking libisl22:s390x (0.22-2) ... Preparing to unpack .../4-libcc1-0_9.2.1-21ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../5-binutils-s390x-linux-gnu_2.33.1-6ubuntu3_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../6-libbinutils_2.33.1-6ubuntu3_s390x.deb ... Unpacking libbinutils:s390x (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... 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Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_s390x.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_s390x.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu4_s390x.deb ... 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils (2.33.1-6ubuntu3) ... Setting up libgcc-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:s390x (2.30-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18314849 s390x focal -c chroot:build-PACKAGEBUILD-18314849 --arch=s390x --dist=focal --nolog libbio-db-hts-perl_3.01-1.dsc Initiating build PACKAGEBUILD-18314849 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-020.buildd +==============================================================================+ | libbio-db-hts-perl 3.01-1 (s390x) 05 Jan 2020 12:13 | +==============================================================================+ Package: libbio-db-hts-perl Version: 3.01-1 Source Version: 3.01-1 Distribution: focal Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/libbio-db-hts-perl-wUxilN/libbio-db-hts-perl-3.01' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-db-hts-perl-wUxilN' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18314849/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-db-hts-perl_3.01-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-_QBUmo/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-_QBUmo/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_QBUmo/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_QBUmo/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_QBUmo/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-_QBUmo/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-_QBUmo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libextutils-cbuilder-perl, libextutils-pkgconfig-perl, libhts-dev, libmodule-build-perl, perl Filtered Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libextutils-cbuilder-perl, libextutils-pkgconfig-perl, libhts-dev, libmodule-build-perl, perl dpkg-deb: building package 'sbuild-build-depends-libbio-db-hts-perl-dummy' in '/<>/resolver-Jr40Jt/apt_archive/sbuild-build-depends-libbio-db-hts-perl-dummy.deb'. Ign:1 copy:/<>/resolver-Jr40Jt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Jr40Jt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Jr40Jt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Jr40Jt/apt_archive ./ Sources [268 B] Get:5 copy:/<>/resolver-Jr40Jt/apt_archive ./ Packages [585 B] Fetched 2972 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbio-db-hts-perl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbio-perl-perl libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdata-stag-perl libdebhelper-perl libdeflate0 libelf1 libextutils-pkgconfig-perl libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libio-string-perl libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmodule-build-perl libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl krb5-doc krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libmodule-signature-perl libpod-readme-perl libsoftware-license-perl publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbio-perl-perl libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdata-stag-perl libdebhelper-perl libdeflate0 libelf1 libextutils-pkgconfig-perl libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libio-string-perl libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmodule-build-perl libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-libbio-db-hts-perl-dummy zlib1g-dev 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 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7.7.0+dfsg-1 [148 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libio-string-perl all 1.08-3 [11.1 kB] Get:44 http://ftpmaster.internal/ubuntu focal/universe s390x libdata-stag-perl all 0.14-2 [369 kB] Get:45 http://ftpmaster.internal/ubuntu focal/universe s390x libbio-perl-perl all 1.7.6-3 [2568 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libbrotli1 s390x 1.0.7-5 [260 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x libheimbase1-heimdal s390x 7.7.0+dfsg-1 [27.8 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x libhcrypto4-heimdal s390x 7.7.0+dfsg-1 [83.1 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libwind0-heimdal s390x 7.7.0+dfsg-1 [47.4 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x libhx509-5-heimdal s390x 7.7.0+dfsg-1 [98.2 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5-26-heimdal s390x 7.7.0+dfsg-1 [191 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libheimntlm0-heimdal s390x 7.7.0+dfsg-1 [14.5 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x libgssapi3-heimdal s390x 7.7.0+dfsg-1 [87.6 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2 [14.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-2 s390x 2.1.27+dfsg-2 [47.7 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libldap-2.4-2 s390x 2.4.48+dfsg-1ubuntu3 [145 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libnghttp2-14 s390x 1.40.0-1 [74.1 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build1 [50.9 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libssh-4 s390x 0.9.0-1ubuntu5 [180 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libcurl3-gnutls s390x 7.66.0-1ubuntu1 [215 kB] Get:62 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(Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_s390x.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.1-3_s390x.deb ... Unpacking libpipeline1:s390x (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_s390x.deb ... Unpacking man-db (2.9.0-2) ... 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Preparing to unpack .../52-libsasl2-modules-db_2.1.27+dfsg-2_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../53-libsasl2-2_2.1.27+dfsg-2_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../54-libldap-common_2.4.48+dfsg-1ubuntu3_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1ubuntu3) ... Selecting previously unselected package libldap-2.4-2:s390x. Preparing to unpack .../55-libldap-2.4-2_2.4.48+dfsg-1ubuntu3_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.48+dfsg-1ubuntu3) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../56-libnghttp2-14_1.40.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.40.0-1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../57-librtmp1_2.4+20151223.gitfa8646d.1-2build1_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build1) ... Selecting previously unselected package libssh-4:s390x. Preparing to unpack .../58-libssh-4_0.9.0-1ubuntu5_s390x.deb ... Unpacking libssh-4:s390x (0.9.0-1ubuntu5) ... Selecting previously unselected package libcurl3-gnutls:s390x. Preparing to unpack .../59-libcurl3-gnutls_7.66.0-1ubuntu1_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.66.0-1ubuntu1) ... Selecting previously unselected package libdeflate0. Preparing to unpack .../60-libdeflate0_1.5-1_s390x.deb ... Unpacking libdeflate0 (1.5-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../61-pkg-config_0.29.1-0ubuntu3_s390x.deb ... Unpacking pkg-config (0.29.1-0ubuntu3) ... Selecting previously unselected package libextutils-pkgconfig-perl. Preparing to unpack .../62-libextutils-pkgconfig-perl_1.16-1_all.deb ... Unpacking libextutils-pkgconfig-perl (1.16-1) ... Selecting previously unselected package libhts2:s390x. Preparing to unpack .../63-libhts2_1.9-12_s390x.deb ... Unpacking libhts2:s390x (1.9-12) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../64-liblzma-dev_5.2.4-1_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.4-1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../65-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu3_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Selecting previously unselected package libhts-dev:s390x. Preparing to unpack .../66-libhts-dev_1.9-12_s390x.deb ... Unpacking libhts-dev:s390x (1.9-12) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../67-libmodule-build-perl_0.422900-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.422900-1) ... Selecting previously unselected package sbuild-build-depends-libbio-db-hts-perl-dummy. Preparing to unpack .../68-sbuild-build-depends-libbio-db-hts-perl-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-libbio-db-hts-perl-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.1-3) ... Setting up libkeyutils1:s390x (1.6-6ubuntu1) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libbrotli1:s390x (1.0.7-5) ... Setting up libnghttp2-14:s390x (1.40.0-1) ... Setting up libmagic1:s390x (1:5.37-6) ... Setting up libdeflate0 (1.5-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libicu63:s390x (63.2-2) ... Setting up libmodule-build-perl (0.422900-1) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:s390x (7.7.0+dfsg-1) ... Setting up liblzma-dev:s390x (5.2.4-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libbio-perl-perl (1.7.6-3) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu1) ... Setting up libheimbase1-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libtool (2.4.6-11) ... Setting up libextutils-pkgconfig-perl (1.16-1) ... Setting up libasn1-8-heimdal:s390x (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libwind0-heimdal:s390x (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up libssh-4:s390x (0.9.0-1ubuntu5) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libhx509-5-heimdal:s390x (7.7.0+dfsg-1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:s390x (7.7.0+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:s390x (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl3-gnutls:s390x (7.66.0-1ubuntu1) ... Setting up libhts2:s390x (1.9-12) ... Setting up libhts-dev:s390x (1.9-12) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libbio-db-hts-perl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-s390x-linux-gnu_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.1-6ubuntu3 libbio-perl-perl_1.7.6-3 libblkid1_2.34-0.1ubuntu4 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libcurl3-gnutls_7.66.0-1ubuntu1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdeflate0_1.5-1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libext2fs2_1.45.3-4ubuntu2 libextutils-pkgconfig-perl_1.16-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libgssapi3-heimdal_7.7.0+dfsg-1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.9-12 libhts2_1.9-12 libhx509-5-heimdal_7.7.0+dfsg-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1ubuntu3 libldap-common_2.4.48+dfsg-1ubuntu3 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmodule-build-perl_0.422900-1 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libreadline8_8.0-3 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssh-4_0.9.0-1ubuntu5 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libwind0-heimdal_7.7.0+dfsg-1 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbio-db-hts-perl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 21 18:10:43 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-db-hts-perl_3.01-1.dsc dpkg-source: info: extracting libbio-db-hts-perl in libbio-db-hts-perl-3.01 dpkg-source: info: unpacking libbio-db-hts-perl_3.01.orig.tar.gz dpkg-source: info: unpacking libbio-db-hts-perl_3.01-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_htslib.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18314849 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18314849 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18314849 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbio-db-hts-perl dpkg-buildpackage: info: source version 3.01-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-DB-HTS' version '3.01' dh_auto_build -a perl Build Building Bio-DB-HTS s390x-linux-gnu-gcc -I/usr/lib/s390x-linux-gnu/perl/5.30/CORE -DVERSION="3.01" -DXS_VERSION="3.01" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wno-error -Wno-unused-result -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/HTS.o lib/Bio/DB/HTS.c lib/Bio/DB/HTS.xs: In function ‘XS_Bio__DB__HTS__VCF__Header_fmt_text’: lib/Bio/DB/HTS.xs:1769:5: warning: ‘bcf_hdr_fmt_text’ is deprecated: use bcf_hdr_format() instead [-Wdeprecated-declarations] 1769 | RETVAL = newSVpv(bcf_hdr_fmt_text(header, is_bcf, &len), 0); | ^~~~~~ In file included from lib/Bio/DB/HTS.xs:59: /usr/include/htslib/vcf.h:439:11: note: declared here 439 | char *bcf_hdr_fmt_text(const bcf_hdr_t *hdr, int is_bcf, int *len) | ^~~~~~~~~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/HTS/HTS.bs') s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/HTS/HTS.so lib/Bio/DB/HTS.o -lhts -lpthread -lz s390x-linux-gnu-gcc -I/usr/lib/s390x-linux-gnu/perl/5.30/CORE -DVERSION="3.01" -DXS_VERSION="3.01" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wno-error -Wno-unused-result -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/HTS/Faidx.o lib/Bio/DB/HTS/Faidx.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.bs') s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.so lib/Bio/DB/HTS/Faidx.o -lhts -lpthread -lz dh_auto_test -a perl Build test --verbose 1 t/00load.t ....... ok 1 - use Bio::DB::HTS; ok 2 - use Bio::DB::HTS::Tabix; ok 3 - use Bio::DB::HTS::Tabix::Iterator; ok 4 - use Bio::DB::HTS::Kseq; 1..4 ok t/01bam.t ........ 1..452 # Running under perl version 5.030000 for linux # Current time local: Sun Jan 5 12:13:13 2020 # Current time GMT: Sun Jan 5 12:13:13 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok 269 ok 270 ok 271 ok 272 ok 273 ok 274 ok 275 ok 276 ok 277 ok 278 ok 279 ok 280 ok 281 ok 282 ok 283 ok 284 ok 285 ok 286 ok 287 ok 288 ok 289 ok 290 ok 291 ok 292 ok 293 ok 294 ok 295 ok 296 ok 297 ok 298 ok 299 ok 300 ok 301 ok 302 ok 303 ok 304 ok 305 ok 306 ok 307 ok 308 ok 309 ok 310 ok 311 ok 312 ok 313 ok 314 ok 315 ok 316 ok 317 ok 318 ok 319 ok 320 ok 321 ok 322 ok 323 ok 324 ok 325 ok 326 ok 327 ok 328 ok 329 ok 330 ok 331 ok 332 ok 333 ok 334 ok 335 ok 336 ok 337 ok 338 ok 339 ok 340 ok 341 ok 342 ok 343 ok 344 ok 345 ok 346 ok 347 ok 348 ok 349 ok 350 ok 351 ok 352 ok 353 ok 354 ok 355 ok 356 ok 357 ok 358 ok 359 ok 360 ok 361 ok 362 ok 363 ok 364 ok 365 ok 366 ok 367 ok 368 ok 369 ok 370 ok 371 ok 372 ok 373 ok 374 ok 375 ok 376 ok 377 ok 378 ok 379 ok 380 ok 381 ok 382 ok 383 ok 384 ok 385 ok 386 ok 387 ok 388 ok 389 ok 390 ok 391 ok 392 ok 393 ok 394 ok 395 ok 396 ok 397 ok 398 ok 399 ok 400 ok 401 ok 402 ok 403 ok 404 ok 405 ok 406 ok 407 ok 408 ok 409 ok 410 ok 411 ok 412 ok 413 ok 414 ok 415 ok 416 ok 417 ok 418 ok 419 ok 420 ok 421 ok 422 ok 423 ok 424 ok 425 ok 426 ok 427 ok 428 ok 429 ok 430 ok 431 ok 432 ok 433 ok 434 ok 435 ok 436 ok 437 ok 438 ok 439 ok 440 ok 441 ok 442 ok 443 ok 444 ok 445 ok 446 ok 447 ok 448 ok 449 ok 450 ok 451 ok 452 ok t/02faidx.t ...... 1..15 ok 1 - use Bio::DB::HTS; ok 2 - use Bio::DB::HTS::Faidx; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 # 230218 ok 13 - length of I ok 14 - has sequence I ok 15 - Does not have sequence II ok t/03cram.t ....... 1..139 # Running under perl version 5.030000 for linux # Current time local: Sun Jan 5 12:13:14 2020 # Current time GMT: Sun Jan 5 12:13:14 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok t/04tabix.t ...... 1..21 ok 1 - use Bio::DB::HTS::Tabix; ok 2 - \#CHROM FROM TO GERP ok 3 - \#CHROM FROM TO GERP ok 4 - can query a region ok 5 - can get a value from the iterator ok 6 - row value is correct ok 7 - correct number of values come back from the iterator ok 8 - A reference of type 'ARRAY' isa 'ARRAY' ok 9 - seqnames are correct ok 10 - can query a region with ':' in chr ok 11 - can get a value from the iterator ok 12 - row value is correct with ':' in chr ok 13 - can query a region with ':' in chr, no end ok 14 - can get a value from the iterator ok 15 - row value is correct with ':' in chr, no end ok 16 - can query a region with ':' in chr, no coord ok 17 - can get a value from the iterator ok 18 - row value is correct with ':' in chr, no coord ok 19 - querying non existent chrom ok 20 - \#\#fileformat=VCFv4.2 ok 21 - \#\#reference=human_b36_both.fasta ok # Failed test 'correct number of variants identified in file' # at t/05vcf.t line 236. # got: '0' # expected: '9' # Failed test 'Next row' # at t/05vcf.t line 280. Can't call method "chromosome" on an undefined value at t/05vcf.t line 281. # Looks like your test exited with 2 just after 105. t/05vcf.t ........ 1..177 ok 1 - use Bio::DB::HTS::VCF; ok 2 - use Bio::DB::HTS::VCF::Row; ok 3 - use Bio::DB::HTS::VCF::RowPtr; ok 4 - use Bio::DB::HTS::VCF::Header; ok 5 - use Bio::DB::HTS::VCF::HeaderPtr; ok 6 - Chromosome value read ok 7 - Chromosome value read ok 8 - Position value read ok 9 - Quality value read ok 10 - Quality value read ok 11 - ID value read ok 12 - Number of alleles value read ok 13 - A reference of type 'ARRAY' isa 'ARRAY' ok 14 - alleles are correct ok 15 - VCF file open ok 16 - correct number of variants identified in file ok 17 - Header formatted string ok 18 - VCF Header version matches ok 19 - Number of samples ok 20 - sample names correct ok 21 - Number of seqnames ok 22 ok 23 - sequence names correct ok 24 - Next row ok 25 - Chromosome value read ok 26 - Position value read ok 27 - ID value read ok 28 - Num Filters OK ok 29 - Actual Filter present ok 30 - PASS filter absent ok 31 - Variant type matches ok 32 - info read correctly ok 33 - A reference of type 'ARRAY' isa 'ARRAY' ok 34 - info flag read correctly ok 35 - info flag type correct ok 36 - A reference of type 'ARRAY' isa 'ARRAY' ok 37 - info float read correctly ok 38 - info float type correct ok 39 - A reference of type 'ARRAY' isa 'ARRAY' ok 40 - info string read correctly ok 41 - info String type correct ok 42 - A reference of type 'ARRAY' isa 'ARRAY' ok 43 - info ints read correctly ok 44 - info int type correct ok 45 - format int read ok 46 - format int read ok 47 - format id not present ok 48 - format read ok 49 - Next row ok 50 - Chromosome value read ok 51 - Position value read ok 52 - Quality value read ok 53 - Reference value read ok 54 - Num Alleles ok 55 - Is SNP ok 56 - A reference of type 'ARRAY' isa 'ARRAY' ok 57 - alleles are correct ok 58 - Num Filters OK ok 59 - PASS Filter present ok 60 - Actual Filter absent ok 61 - Made up filter not existing ok 62 - info read correctly ok 63 - format int read ok 64 - format int read ok 65 - format id not present ok 66 - format read ok 67 - Next row ok 68 - Chromosome value read ok 69 - int format type correct ok 70 - format int read ok 71 - format int read ok 72 - format int read # !!! Not sure this is correct !!! ok 73 - format int read ok 74 - format read ok 75 - A reference of type 'ARRAY' isa 'ARRAY' ok 76 - genotypes read correctly ok 77 - format id not found ok 78 - info id not found ok 79 - info read correctly ok 80 - can query a region ok 81 - can get a value from the iterator ok 82 - chr ok 83 - position ok 84 - id ok 85 - reference ok 86 - info ok 87 - info ok 88 - info ok 89 - info ok 90 - can get a value from the iterator ok 91 - chr ok 92 - position ok 93 - id ok 94 - reference ok 95 - info ok 96 - no more results ok 97 - BCF file open not ok 98 - correct number of variants identified in file ok 99 - Header formatted string ok 100 - VCF Header version matches ok 101 - Number of samples ok 102 - sample names correct ok 103 - Number of seqnames ok 104 - sequence names correct not ok 105 - Next row Dubious, test returned 2 (wstat 512, 0x200) Failed 74/177 subtests t/06kseq.t ....... ok 1 - correct num. seqs in bug2335 ok 2 - sample sequence obtained ok 3 - seq matches bug2335 ok 4 - desc matches bug2335 ok 5 - name matches bug2335 ok 6 - qual matches bug2335 ok 7 - Checking qual and seq lengths are the same in bug2335 ok 8 - Checking qual and seq lengths are the same using object methods in bug2335 ok 9 - correct num. seqs in evil_wrapping ok 10 - sample sequence obtained ok 11 - seq matches evil_wrapping ok 12 - desc matches evil_wrapping ok 13 - name matches evil_wrapping ok 14 - qual matches evil_wrapping ok 15 - Checking qual and seq lengths are the same in evil_wrapping ok 16 - Checking qual and seq lengths are the same using object methods in evil_wrapping ok 17 - correct num. seqs in example ok 18 - sample sequence obtained ok 19 - seq matches example ok 20 - desc matches example ok 21 - name matches example ok 22 - qual matches example ok 23 - Checking qual and seq lengths are the same in example ok 24 - Checking qual and seq lengths are the same using object methods in example ok 25 - correct num. seqs in illumina_faked ok 26 - sample sequence obtained ok 27 - seq matches illumina_faked ok 28 - desc matches illumina_faked ok 29 - name matches illumina_faked ok 30 - qual matches illumina_faked ok 31 - Checking qual and seq lengths are the same in illumina_faked ok 32 - Checking qual and seq lengths are the same using object methods in illumina_faked ok 33 - correct num. seqs in sanger_93 ok 34 - sample sequence obtained ok 35 - seq matches sanger_93 ok 36 - desc matches sanger_93 ok 37 - name matches sanger_93 ok 38 - qual matches sanger_93 ok 39 - Checking qual and seq lengths are the same in sanger_93 ok 40 - Checking qual and seq lengths are the same using object methods in sanger_93 ok 41 - correct num. seqs in sanger_faked ok 42 - sample sequence obtained ok 43 - seq matches sanger_faked ok 44 - desc matches sanger_faked ok 45 - name matches sanger_faked ok 46 - qual matches sanger_faked ok 47 - Checking qual and seq lengths are the same in sanger_faked ok 48 - Checking qual and seq lengths are the same using object methods in sanger_faked ok 49 - correct num. seqs in solexa_example ok 50 - sample sequence obtained ok 51 - seq matches solexa_example ok 52 - desc matches solexa_example ok 53 - name matches solexa_example ok 54 - qual matches solexa_example ok 55 - Checking qual and seq lengths are the same in solexa_example ok 56 - Checking qual and seq lengths are the same using object methods in solexa_example ok 57 - correct num. seqs in solexa_faked ok 58 - sample sequence obtained ok 59 - seq matches solexa_faked ok 60 - desc matches solexa_faked ok 61 - name matches solexa_faked ok 62 - qual matches solexa_faked ok 63 - Checking qual and seq lengths are the same in solexa_faked ok 64 - Checking qual and seq lengths are the same using object methods in solexa_faked ok 65 - correct num. seqs in test1_sanger ok 66 - sample sequence obtained ok 67 - seq matches test1_sanger ok 68 - desc matches test1_sanger ok 69 - name matches test1_sanger ok 70 - qual matches test1_sanger ok 71 - Checking qual and seq lengths are the same in test1_sanger ok 72 - Checking qual and seq lengths are the same using object methods in test1_sanger ok 73 - correct num. seqs in test2_solexa ok 74 - sample sequence obtained ok 75 - seq matches test2_solexa ok 76 - desc matches test2_solexa ok 77 - name matches test2_solexa ok 78 - qual matches test2_solexa ok 79 - Checking qual and seq lengths are the same in test2_solexa ok 80 - Checking qual and seq lengths are the same using object methods in test2_solexa ok 81 - correct num. seqs in test3_illumina ok 82 - sample sequence obtained ok 83 - seq matches test3_illumina ok 84 - desc matches test3_illumina ok 85 - name matches test3_illumina ok 86 - qual matches test3_illumina ok 87 - Checking qual and seq lengths are the same in test3_illumina ok 88 - Checking qual and seq lengths are the same using object methods in test3_illumina ok 89 - correct num. seqs in tricky ok 90 - sample sequence obtained ok 91 - seq matches tricky ok 92 - desc matches tricky ok 93 - name matches tricky ok 94 - qual matches tricky ok 95 - Checking qual and seq lengths are the same in tricky ok 96 - Checking qual and seq lengths are the same using object methods in tricky ok 97 - correct num. seqs in zero_qual ok 98 - sample sequence obtained ok 99 - seq matches zero_qual ok 100 - desc matches zero_qual ok 101 - name matches zero_qual ok 102 - qual matches zero_qual ok 103 - Checking qual and seq lengths are the same in zero_qual ok 104 - Checking qual and seq lengths are the same using object methods in zero_qual 1..104 ok [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Destination address required t/07cramwrite.t .. 1..22 # Running under perl version 5.030000 for linux # Current time local: Sun Jan 5 12:13:19 2020 # Current time GMT: Sun Jan 5 12:13:19 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok t/08bamwrite.t ... 1..22 # Running under perl version 5.030000 for linux # Current time local: Sun Jan 5 12:13:19 2020 # Current time GMT: Sun Jan 5 12:13:19 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok t/09sam.t ........ ok 1 ok 2 - Number of reference sequences ok 3 - num reference sequences ok 4 ok 5 - num reference sequence names ok 6 - reference sequence name ok 7 ok 8 ok 9 ok 10 ok 11 - num reads mapped ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq' ok 22 1..22 ok t/10leak.t ....... skipped: require Test::LeakTrace Test Summary Report ------------------- t/05vcf.t (Wstat: 512 Tests: 105 Failed: 2) Failed tests: 98, 105 Non-zero exit status: 2 Parse errors: Bad plan. You planned 177 tests but ran 105. Files=11, Tests=906, 6 wallclock secs ( 0.05 usr 0.01 sys + 5.67 cusr 0.25 csys = 5.98 CPU) Result: FAIL Failed 1/11 test programs. 2/906 subtests failed. dh_auto_test: perl Build test --verbose 1 returned exit code 255 make: *** [debian/rules:6: build-arch] Error 255 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1213 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 10140 Build-Time: 10 Distribution: focal Fail-Stage: build Host Architecture: s390x Install-Time: 9 Job: libbio-db-hts-perl_3.01-1.dsc Machine Architecture: s390x Package: libbio-db-hts-perl Package-Time: 19 Source-Version: 3.01-1 Space: 10140 Status: attempted Version: 3.01-1 -------------------------------------------------------------------------------- Finished at 20200105-1213 Build needed 00:00:19, 10140k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18314849 Scanning for processes to kill in build PACKAGEBUILD-18314849