https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18314945 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-038 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:04 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 12:09:03 ntpdate[1935]: adjust time server 10.211.37.1 offset -0.000188 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18314945 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18314945 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18314945 Starting target for build PACKAGEBUILD-18314945 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18314945 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18314945 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18314945 Updating target for build PACKAGEBUILD-18314945 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [966 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted amd64 Packages [18.4 kB] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8671 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse amd64 Packages [152 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.9 MB in 15s (1078 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 94 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 70.2 MB of archives. After this operation, 51.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.30-0ubuntu3 [2549 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.30-0ubuntu3 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.3.0-24.26 [1096 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22-2 [592 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 9.2.1-21ubuntu1 [49.0 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.33.1-6ubuntu3 [1639 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.33.1-6ubuntu3 [474 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.33.1-6ubuntu3 [3400 B] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc1 amd64 1:9.2.1-21ubuntu1 [40.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 9.2.1-21ubuntu1 [89.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 9.2.1-21ubuntu1 [28.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 9.2.1-21ubuntu1 [9236 B] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.2.1-21ubuntu1 [395 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 9.2.1-21ubuntu1 [139 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 9.2.1-21ubuntu1 [301 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 9.2.1-21ubuntu1 [130 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 9.2.1-21ubuntu1 [146 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.2.1-21ubuntu1 [11.0 MB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.2.1-21ubuntu1 [1709 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.2.1-21ubuntu1 [2362 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.2.1-21ubuntu1 [10.4 MB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.2.1-21ubuntu1 [9729 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 9.2.1-21ubuntu1 [512 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.30-0ubuntu3 [2725 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu2 [60.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-5ubuntu1 [639 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu4 [63.8 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu4 [137 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu4 [20.5 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu4 [175 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libselinux1 amd64 3.0-1 [68.7 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu4 [149 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu4 [101 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu4 [120 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu4 [1022 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.250ubuntu2 [6336 B] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.30-0ubuntu3 [625 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-1ubuntu1 [20.8 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 244-3ubuntu1 [9368 B] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5ubuntu1 [18.7 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu1 [34.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1 [11.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu5 [39.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.27-1 [14.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 244-3ubuntu1 [76.3 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu7 [127 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-6 [29.2 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-1ubuntu1 [182 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.18.1-2 [189 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.15.0-2 [37.7 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2 [793 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 26-3ubuntu1 [42.9 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.2-2ubuntu1 [39.4 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu4 [115 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 244-3ubuntu1 [3677 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 244-3ubuntu1 [260 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.5 [851 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-3ubuntu1 [419 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 1.9.5 [1281 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1 [9880 B] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1 [85.3 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.30.1-1ubuntu1 [540 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.2 MB in 5s (15.3 MB/s) (Reading database ... 12741 files and directories currently installed.) 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Setting up libstdc++-9-dev:amd64 (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18314945 amd64 focal -c chroot:build-PACKAGEBUILD-18314945 --arch=amd64 --dist=focal --nolog -A libbpp-popgen_2.4.1-2.dsc Initiating build PACKAGEBUILD-18314945 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:04 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-038.buildd +==============================================================================+ | libbpp-popgen 2.4.1-2 (amd64) 05 Jan 2020 12:11 | +==============================================================================+ Package: libbpp-popgen Version: 2.4.1-2 Source Version: 2.4.1-2 Distribution: focal Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libbpp-popgen-a_U4rX/libbpp-popgen-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-popgen-a_U4rX' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18314945/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-popgen_2.4.1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-IDyH8l/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-IDyH8l/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IDyH8l/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-IDyH8l/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IDyH8l/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-IDyH8l/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (246 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-IDyH8l/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14652 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), cmake, d-shlibs (>= 0.82), libbpp-core-dev (>= 2.4.1), libbpp-seq-dev (>= 2.4.1) Filtered Build-Depends: debhelper-compat (= 12), cmake, d-shlibs (>= 0.82), libbpp-core-dev (>= 2.4.1), libbpp-seq-dev (>= 2.4.1) dpkg-deb: building package 'sbuild-build-depends-libbpp-popgen-dummy' in '/<>/resolver-uSo3nc/apt_archive/sbuild-build-depends-libbpp-popgen-dummy.deb'. Ign:1 copy:/<>/resolver-uSo3nc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uSo3nc/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-uSo3nc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uSo3nc/apt_archive ./ Sources [257 B] Get:5 copy:/<>/resolver-uSo3nc/apt_archive ./ Packages [576 B] Fetched 2952 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libbpp-popgen build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-seq-dev libbpp-seq12 libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-popgen-dummy 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After this operation, 126 MB of additional disk space will be used. 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0.176-1.1 [44.1 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1 amd64 2.2.9-1 [73.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libglib2.0-0 amd64 2.63.3-1 [1279 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 libicu63 amd64 63.2-2 [8294 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libxml2 amd64 2.9.4+dfsg1-8ubuntu1 [648 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 gettext-base amd64 0.19.8.1-10 [50.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5support0 amd64 1.17-6 [31.4 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 libk5crypto3 amd64 1.17-6 [80.2 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libkeyutils1 amd64 1.6-6ubuntu1 [10.2 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-3 amd64 1.17-6 [330 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi-krb5-2 amd64 1.17-6 [121 kB] Get:22 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libroken18-heimdal amd64 7.7.0+dfsg-1 [41.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-1 [181 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-1 [29.7 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-1 [87.8 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-1 [47.9 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-1 [107 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-1 [207 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-1 [15.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-1 [96.6 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [14.9 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [49.3 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1ubuntu3 [155 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libnghttp2-14 amd64 1.40.0-1 [78.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.0-1ubuntu5 [196 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4 amd64 7.66.0-1ubuntu1 [232 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libuv1 amd64 1.33.1-2 [80.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 cmake amd64 3.15.4-1ubuntu2 [3607 kB] Get:53 http://ftpmaster.internal/ubuntu focal/universe amd64 d-shlibs all 0.88 [10.5 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-11 [194 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-1 [90.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-5 [151 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10 [897 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.7.1ubuntu1 [875 kB] Get:67 http://ftpmaster.internal/ubuntu focal/universe amd64 libbpp-core4 amd64 2.4.1-4 [610 kB] Get:68 http://ftpmaster.internal/ubuntu focal/universe amd64 libbpp-core-dev amd64 2.4.1-4 [935 kB] Get:69 http://ftpmaster.internal/ubuntu focal/universe amd64 libbpp-seq12 amd64 2.4.1-4 [524 kB] Get:70 http://ftpmaster.internal/ubuntu focal/universe amd64 libbpp-seq-dev amd64 2.4.1-4 [754 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.2 MB in 2s (13.6 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libpipeline1:amd64 (1.5.1-3) ... Setting up libkeyutils1:amd64 (1.6-6ubuntu1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.7-5) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.33.1-2) ... Setting up libbpp-core4:amd64 (2.4.1-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.88) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.15.4-1ubuntu2) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libbpp-seq12:amd64 (2.4.1-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8ubuntu1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libtool (2.4.6-11) ... Setting up libarchive13:amd64 (3.4.0-1build1) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libbpp-core-dev (2.4.1-4) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libssh-4:amd64 (0.9.0-1ubuntu5) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-4) ... Setting up gettext (0.19.8.1-10) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl4:amd64 (7.66.0-1ubuntu1) ... Setting up cmake (3.15.4-1ubuntu2) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libbpp-popgen-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic amd64 (x86_64) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-x86-64-linux-gnu_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 cmake_3.15.4-1ubuntu2 cmake-data_3.15.4-1ubuntu2 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1build1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.1-6ubuntu3 libblkid1_2.34-0.1ubuntu4 libbpp-core-dev_2.4.1-4 libbpp-core4_2.4.1-4 libbpp-seq-dev_2.4.1-4 libbpp-seq12_2.4.1-4 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libcurl4_7.66.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libgssapi3-heimdal_7.7.0+dfsg-1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.7.0+dfsg-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjson-c4_0.13.1+dfsg-6 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1ubuntu3 libldap-common_2.4.48+dfsg-1ubuntu3 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_9.2.1-21ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libquadmath0_9.2.1-21ubuntu1 libreadline8_8.0-3 librhash0_1.3.9-1 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2ubuntu1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssh-4_0.9.0-1ubuntu5 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libtsan0_9.2.1-21ubuntu1 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libuv1_1.33.1-2 libwind0-heimdal_7.7.0+dfsg-1 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-popgen-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Aug 21 06:53:41 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-popgen_2.4.1-2.dsc dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18314945 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18314945 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18314945 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 9.2.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color= make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-popgen-shared make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build Scanning dependencies of target bpp-popgen-static make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<>/src/Bpp/PopGen/BasicAlleleInfo.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<>/src/Bpp/PopGen/BasicAlleleInfo.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSet.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSetTools.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Date.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o [ 20%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSet.cpp cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Group.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSetTools.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Individual.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Date.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Group.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Individual.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<>/src/Bpp/PopGen/GeneralExceptions.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<>/src/Bpp/PopGen/LocusInfo.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotype.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<>/src/Bpp/PopGen/SequenceStatistics.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<>/src/Bpp/PopGen/GeneralExceptions.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<>/src/Bpp/PopGen/LocusInfo.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotype.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 95%] Linking CXX shared library libbpp-popgen.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o 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/<>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 96%] Built target bpp-popgen-shared [ 98%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<>/src/Bpp/PopGen/SequenceStatistics.cpp [100%] Linking CXX static library libbpp-popgen.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-popgen.a CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o 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make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-static.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-shared.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target bpp-popgen-static [100%] Built target bpp-popgen-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-popgen8/DEBIAN/symbols doesn't match completely debian/libbpp-popgen8.symbols.amd64 --- debian/libbpp-popgen8.symbols.amd64 (libbpp-popgen8_2.4.1-2_amd64) +++ dpkg-gensymbolseneTbA 2020-01-05 12:13:40.653462447 +0000 @@ -910,8 +910,8 @@ _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1 _ZNSt6vectorIN3bpp19GeneMapperCsvExport6AlleleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1 _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.4.1 - _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED1Ev@Base 2.4.1 - _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED2Ev@Base 2.4.1 +#MISSING: 2.4.1-2# _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED1Ev@Base 2.4.1 +#MISSING: 2.4.1-2# _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED2Ev@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:8: binary] Error 255 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1213 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 151352 Build-Time: 109 Distribution: focal Fail-Stage: build Host Architecture: amd64 Install-Time: 45 Job: libbpp-popgen_2.4.1-2.dsc Machine Architecture: amd64 Package: libbpp-popgen Package-Time: 155 Source-Version: 2.4.1-2 Space: 151352 Status: attempted Version: 2.4.1-2 -------------------------------------------------------------------------------- Finished at 20200105-1213 Build needed 00:02:35, 151352k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18314945 Scanning for processes to kill in build PACKAGEBUILD-18314945