https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18330605 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-013 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 11:23:36 ntpdate[1839]: adjust time server 10.211.37.1 offset 0.000002 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18330605 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18330605 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18330605 Starting target for build PACKAGEBUILD-18330605 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18330605 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18330605 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18330605 Updating target for build PACKAGEBUILD-18330605 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x Packages [916 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted s390x Packages [1288 B] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8337 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse s390x Packages [119 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.4 MB in 3s (5085 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 91 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.3.0-24.26 [1094 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22-2 [546 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x libcc1-0 s390x 9.2.1-21ubuntu1 [46.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-6ubuntu3 [1468 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-6ubuntu3 [301 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-6ubuntu3 [3328 B] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libgcc1 s390x 1:9.2.1-21ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libgomp1 s390x 9.2.1-21ubuntu1 [83.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libitm1 s390x 9.2.1-21ubuntu1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libatomic1 s390x 9.2.1-21ubuntu1 [8264 B] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libubsan1 s390x 9.2.1-21ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++6 s390x 9.2.1-21ubuntu1 [504 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu2 [60.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu4 [61.5 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu4 [128 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu4 [20.5 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu4 [160 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 3.0-1 [65.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu4 [137 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu4 [93.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu4 [113 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu4 [981 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu2 [6152 B] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 244-3ubuntu1 [9364 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5ubuntu1 [18.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu1 [33.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu5 [37.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 244-3ubuntu1 [71.8 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2 [684 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.2-2ubuntu1 [38.6 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu4 [110 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 244-3ubuntu1 [3325 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 244-3ubuntu1 [239 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.5 [789 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x apt s390x 1.9.5 [1242 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 3.0-1 [9880 B] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 3.0-1 [80.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1ubuntu1 [504 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 1s (84.3 MB/s) (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu3_s390x.deb ... Unpacking libc6-dev:s390x (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu3_s390x.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../2-linux-libc-dev_5.3.0-24.26_s390x.deb ... Unpacking linux-libc-dev:s390x (5.3.0-24.26) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:s390x. Preparing to unpack .../3-libisl22_0.22-2_s390x.deb ... Unpacking libisl22:s390x (0.22-2) ... Preparing to unpack .../4-libcc1-0_9.2.1-21ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../5-binutils-s390x-linux-gnu_2.33.1-6ubuntu3_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../6-libbinutils_2.33.1-6ubuntu3_s390x.deb ... Unpacking libbinutils:s390x (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... 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Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_s390x.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_s390x.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu4_s390x.deb ... 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Setting up libperl5.30:s390x (5.30.0-9) ... Setting up libisl22:s390x (0.22-2) ... Setting up liblockfile1:s390x (1.16-1.1) ... Setting up libjson-c4:s390x (0.13.1+dfsg-6) ... Setting up libbinutils:s390x (2.33.1-6ubuntu3) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up libcc1-0:s390x (9.2.1-21ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libitm1:s390x (9.2.1-21ubuntu1) ... Setting up libkmod2:s390x (26-3ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.33.1-6ubuntu3) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils (2.33.1-6ubuntu3) ... Setting up libgcc-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:s390x (2.30-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18330605 s390x focal -c chroot:build-PACKAGEBUILD-18330605 --arch=s390x --dist=focal --nolog 'mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3build1.dsc' Initiating build PACKAGEBUILD-18330605 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:44:14 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-013.buildd +==============================================================================+ | mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3build1 (s390x) 05 Jan 2020 11:23 | +==============================================================================+ Package: mrtrix3 Version: 3.0~rc3+git135-g2b8e7d0c2-3build1 Source Version: 3.0~rc3+git135-g2b8e7d0c2-3build1 Distribution: focal Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/mrtrix3-wbJe6J/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' with '<>' I: NOTICE: Log filtering will replace 'build/mrtrix3-wbJe6J' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18330605/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-K43o7r/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-K43o7r/apt_archive ./ InRelease Get:2 copy:/<>/resolver-K43o7r/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-K43o7r/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-K43o7r/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-K43o7r/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-K43o7r/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc Filtered Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc dpkg-deb: building package 'sbuild-build-depends-mrtrix3-dummy' in '/<>/resolver-BDEqn6/apt_archive/sbuild-build-depends-mrtrix3-dummy.deb'. Ign:1 copy:/<>/resolver-BDEqn6/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BDEqn6/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BDEqn6/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BDEqn6/apt_archive ./ Sources [300 B] Get:5 copy:/<>/resolver-BDEqn6/apt_archive ./ Packages [619 B] Fetched 3038 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mrtrix3 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm9 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave7 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-15 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqt5xml5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsub-override-perl libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig ufraw-batch xdg-utils libasound2-plugins alsa-utils libatkmm-1.6-doc nas liblapack-doc libcairo2-doc libcairomm-1.0-doc cups-common libdatrie-doc libeigen3-doc libmpfrc++-dev libfftw3-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc libglibmm-2.4-doc libgtkmm-3.0-dev libiodbc2-dev default-libmysqlclient-dev graphicsmagick-dbg libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libgtk2.0-doc libgtkmm-2.4-doc libhdf5-doc libice-doc icu-doc jackd2 liblcms2-utils libmagickcore-6.q16-6-extra ncurses-doc libpango1.0-doc libqscintilla2-doc libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt5-image-formats-plugins qtwayland5 libicu55 qt4-qtconfig readline-doc librsvg2-bin lm-sensors libsigc++-2.0-doc libsm-doc libthai-doc libtool-doc gcj-jdk libwmf0.2-7-gtk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree texlive-fonts-recommended Recommended packages: curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm dbus libarchive-cpio-perl xdg-user-dirs gsfonts libgail-common libgtk2.0-bin krb5-locales libpng-tools publicsuffix libqt4-sql-mysql | libqt4-sql-odbc | libqt4-sql-psql | libqt4-sql-sqlite qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase qt-at-spi libsasl2-modules libltdl-dev libwacom-bin libwww-perl libxml-sax-expat-perl gnuplot-qt | gnuplot-x11 | gnuplot-nox libopenblas-base | libatlas3-base pstoedit epstool default-jre-headless octave-doc fonts-freefont-otf libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasn1-8-heimdal libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3 libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-9-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm9 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng2 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev liboctave7 libogg0 libopengl0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1 libqscintilla2-qt5-15 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5 libqt5network5 libqt5printsupport5 libqt5sql5 libqt5widgets5 libqt5xml5 libqtcore4 libqtdbus4 libqtgui4 libreadline-dev libroken18-heimdal librsvg2-2 librsvg2-common librtmp1 libsamplerate0 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libssh-4 libsub-override-perl libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff5 libtool libuchardet0 libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwind0-heimdal libwmf0.2-7 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db matlab-support-dev mesa-common-dev mime-support octave octave-common pango1.0-tools pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-mrtrix3-dummy shared-mime-info tex-common texinfo ubuntu-mono ucf uuid-dev x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 437 newly installed, 0 to remove and 0 not upgraded. Need to get 165 MB of archives. After this operation, 907 MB of additional disk space will be used. Get:1 copy:/<>/resolver-BDEqn6/apt_archive ./ sbuild-build-depends-mrtrix3-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libpython3.7-minimal s390x 3.7.5-2 [544 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x libexpat1 s390x 2.2.9-1 [69.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x python3.7-minimal s390x 3.7.5-2 [1630 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x python3-minimal s390x 3.7.5-1ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libmpdec2 s390x 2.4.2-2 [80.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x libpython3.7-stdlib s390x 3.7.5-2 [1693 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x python3.7 s390x 3.7.5-2 [301 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x libpython3-stdlib s390x 3.7.5-1ubuntu1 [6844 B] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x python3 s390x 3.7.5-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libuchardet0 s390x 0.0.6-3 [64.5 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x groff-base s390x 1.22.4-4 [824 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libpipeline1 s390x 1.5.1-3 [26.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x man-db s390x 2.9.0-2 [1103 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libfftw3-double3 s390x 3.3.8-2ubuntu1 [442 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libfreetype6 s390x 2.10.1-2 [319 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x ucf all 3.0038+nmu1 [51.6 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libfontconfig1 s390x 2.13.1-2ubuntu2 [108 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-turbo8 s390x 2.0.3-0ubuntu1 [102 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x liblcms2-2 s390x 2.9-4 [126 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-0 s390x 2.63.3-1 [1176 kB] Get:29 http://ftpmaster.internal/ubuntu focal/universe s390x liblqr-1-0 s390x 0.4.2-2.1 [26.8 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libltdl7 s390x 2.4.6-11 [37.0 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x libtiff5 s390x 4.1.0+git191117-1 [151 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libwebpmux3 s390x 0.6.1-2 [18.3 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x libxau6 s390x 1:1.0.9-0ubuntu1 [7212 B] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu1 [10.4 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libxcb1 s390x 1.13.1-2 [43.0 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libx11-data all 2:1.6.8-1 [113 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libx11-6 s390x 2:1.6.8-1 [542 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libxext6 s390x 2:1.3.4-0ubuntu1 [27.0 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libicu63 s390x 63.2-2 [8044 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libxml2 s390x 2.9.4+dfsg1-8ubuntu1 [664 kB] Get:42 http://ftpmaster.internal/ubuntu focal/universe s390x imagemagick-6-common all 8:6.9.10.23+dfsg-2.1ubuntu10 [60.9 kB] Get:43 http://ftpmaster.internal/ubuntu focal/universe s390x libmagickcore-6.q16-6 s390x 8:6.9.10.23+dfsg-2.1ubuntu10 [1459 kB] Get:44 http://ftpmaster.internal/ubuntu focal/universe s390x libmagickwand-6.q16-6 s390x 8:6.9.10.23+dfsg-2.1ubuntu10 [261 kB] Get:45 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7-minimal s390x 2.7.17-1 [335 kB] Get:46 http://ftpmaster.internal/ubuntu focal/universe s390x python2.7-minimal s390x 2.7.17-1 [1209 kB] Get:47 http://ftpmaster.internal/ubuntu focal/universe s390x python2-minimal s390x 2.7.17-1 [27.8 kB] Get:48 http://ftpmaster.internal/ubuntu focal/universe s390x python-minimal s390x 2.7.17-1 [5996 B] Get:49 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2.7-stdlib s390x 2.7.17-1 [1833 kB] Get:50 http://ftpmaster.internal/ubuntu focal/universe s390x python2.7 s390x 2.7.17-1 [248 kB] Get:51 http://ftpmaster.internal/ubuntu focal/universe s390x libpython2-stdlib s390x 2.7.17-1 [7400 B] Get:52 http://ftpmaster.internal/ubuntu focal/universe s390x libpython-stdlib s390x 2.7.17-1 [5836 B] Get:53 http://ftpmaster.internal/ubuntu focal/universe s390x python2 s390x 2.7.17-1 [26.5 kB] Get:54 http://ftpmaster.internal/ubuntu focal/universe s390x python s390x 2.7.17-1 [7836 B] Get:55 http://ftpmaster.internal/ubuntu focal/universe s390x tex-common all 6.13 [32.7 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-mgc s390x 1:5.37-6 [210 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libmagic1 s390x 1:5.37-6 [72.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x file s390x 1:5.37-6 [23.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libgirepository-1.0-1 s390x 1.62.0-2 [80.0 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-glib-2.0 s390x 1.62.0-2 [132 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libdbus-1-3 s390x 1.12.16-2ubuntu2 [170 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libelf1 s390x 0.176-1.1 [41.4 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libfribidi0 s390x 1.0.7-1.1 [24.5 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-data all 2.63.3-1 [7412 B] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x shared-mime-info s390x 1.10-1 [427 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x xkb-data all 2.26-2ubuntu2 [333 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x gettext-base s390x 0.19.8.1-10 [49.1 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libdrm-common all 2.4.100-4 [5340 B] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libdrm2 s390x 2.4.100-4 [29.8 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libedit2 s390x 3.1-20191211-1 [82.5 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5support0 s390x 1.17-6 [30.4 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libk5crypto3 s390x 1.17-6 [77.9 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libkeyutils1 s390x 1.6-6ubuntu1 [9848 B] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5-3 s390x 1.17-6 [308 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x libgssapi-krb5-2 s390x 1.17-6 [110 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x libpsl5 s390x 0.20.2-2 [49.8 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x hicolor-icon-theme all 0.17-2 [9976 B] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libgdk-pixbuf2.0-common all 2.40.0+dfsg-2 [5000 B] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libgdk-pixbuf2.0-0 s390x 2.40.0+dfsg-2 [158 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x gtk-update-icon-cache s390x 3.24.13-1ubuntu1 [29.5 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x libpixman-1-0 s390x 0.38.4-0ubuntu1 [136 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-render0 s390x 1.13.1-2 [14.6 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-shm0 s390x 1.13.1-2 [5472 B] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libcairo2 s390x 1.16.0-4ubuntu1 [535 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x fontconfig s390x 2.13.1-2ubuntu2 [171 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libgraphite2-3 s390x 1.3.13-11 [67.9 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libharfbuzz0b s390x 2.6.4-1ubuntu1 [371 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x libthai-data all 0.1.28-3 [134 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libdatrie1 s390x 0.2.12-3 [18.1 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x libthai0 s390x 0.1.28-3 [18.1 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x libpango-1.0-0 s390x 1.44.7-1 [156 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x libpangoft2-1.0-0 s390x 1.44.7-1 [32.3 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x libpangocairo-1.0-0 s390x 1.44.7-1 [22.5 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main s390x librsvg2-2 s390x 2.46.4-1ubuntu1 [1250 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main s390x librsvg2-common s390x 2.46.4-1ubuntu1 [9020 B] Get:98 http://ftpmaster.internal/ubuntu focal/main s390x humanity-icon-theme all 0.6.15 [1250 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main s390x ubuntu-mono all 19.04-0ubuntu2 [148 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main s390x adwaita-icon-theme all 3.34.0-1ubuntu1 [3162 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main s390x m4 s390x 1.4.18-4 [196 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main s390x autoconf all 2.69-11ubuntu1 [321 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main s390x automake all 1:1.16.1-4ubuntu3 [522 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main s390x autopoint all 0.19.8.1-10 [412 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main s390x bc s390x 1.07.1-2build1 [84.8 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main s390x libtool all 2.4.6-11 [194 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main s390x dh-autoreconf all 19 [16.1 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main s390x libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main s390x libarchive-zip-perl all 1.67-1 [90.4 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:113 http://ftpmaster.internal/ubuntu focal/main s390x libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main s390x dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:115 http://ftpmaster.internal/ubuntu focal/main s390x dwz s390x 0.13-5 [146 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main s390x gettext s390x 0.19.8.1-10 [867 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.7.1ubuntu1 [875 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main s390x libgfortran5 s390x 9.2.1-21ubuntu1 [359 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main s390x libgfortran-9-dev s390x 9.2.1-21ubuntu1 [413 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main s390x gfortran-9 s390x 9.2.1-21ubuntu1 [8146 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main s390x gfortran s390x 4:9.2.1-3.1ubuntu1 [1376 B] Get:124 http://ftpmaster.internal/ubuntu focal/main s390x libatk1.0-data all 2.34.1-1ubuntu1 [2880 B] Get:125 http://ftpmaster.internal/ubuntu focal/main s390x libatk1.0-0 s390x 2.34.1-1ubuntu1 [41.9 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-atk-1.0 s390x 2.34.1-1ubuntu1 [18.2 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-freedesktop s390x 1.62.0-2 [18.9 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-gdkpixbuf-2.0 s390x 2.40.0+dfsg-2 [8140 B] Get:129 http://ftpmaster.internal/ubuntu focal/main s390x libgtk2.0-common all 2.24.32-4ubuntu4 [126 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main s390x libxft2 s390x 2.3.3-0ubuntu1 [36.8 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main s390x libpangoxft-1.0-0 s390x 1.44.7-1 [16.9 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-pango-1.0 s390x 1.44.7-1 [26.5 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main s390x libavahi-common-data s390x 0.7-4ubuntu6 [21.3 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main s390x libavahi-common3 s390x 0.7-4ubuntu6 [20.2 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main s390x libavahi-client3 s390x 0.7-4ubuntu6 [22.7 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main s390x libcups2 s390x 2.3.0-7 [210 kB] Get:137 http://ftpmaster.internal/ubuntu focal/main s390x libxcomposite1 s390x 1:0.4.5-0ubuntu1 [6724 B] Get:138 http://ftpmaster.internal/ubuntu focal/main s390x libxfixes3 s390x 1:5.0.3-1 [10.4 kB] Get:139 http://ftpmaster.internal/ubuntu focal/main s390x libxcursor1 s390x 1:1.2.0-2 [19.7 kB] Get:140 http://ftpmaster.internal/ubuntu focal/main s390x libxdamage1 s390x 1:1.1.5-1 [6676 B] Get:141 http://ftpmaster.internal/ubuntu focal/main s390x libxi6 s390x 2:1.7.10-0ubuntu1 [27.2 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main s390x libxinerama1 s390x 2:1.1.4-2 [6728 B] Get:143 http://ftpmaster.internal/ubuntu focal/main s390x libxrandr2 s390x 2:1.5.2-0ubuntu1 [17.1 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main s390x libgtk2.0-0 s390x 2.24.32-4ubuntu4 [1633 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe s390x gir1.2-gtk-2.0 s390x 2.24.32-4ubuntu4 [168 kB] Get:146 http://ftpmaster.internal/ubuntu focal/main s390x gir1.2-harfbuzz-0.0 s390x 2.6.4-1ubuntu1 [25.9 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe s390x hdf5-helpers s390x 1.10.4+repack-10 [13.9 kB] Get:148 http://ftpmaster.internal/ubuntu focal/main s390x icu-devtools s390x 63.2-2 [169 kB] Get:149 http://ftpmaster.internal/ubuntu focal/universe s390x imagemagick-6.q16 s390x 8:6.9.10.23+dfsg-2.1ubuntu10 [427 kB] Get:150 http://ftpmaster.internal/ubuntu focal/universe s390x imagemagick s390x 8:6.9.10.23+dfsg-2.1ubuntu10 [14.4 kB] Get:151 http://ftpmaster.internal/ubuntu focal/universe s390x libaec0 s390x 1.0.4-1 [19.5 kB] Get:152 http://ftpmaster.internal/ubuntu focal/main s390x libsuitesparseconfig5 s390x 1:5.6.0+dfsg-2 [9500 B] Get:153 http://ftpmaster.internal/ubuntu focal/main s390x libamd2 s390x 1:5.6.0+dfsg-2 [20.3 kB] Get:154 http://ftpmaster.internal/ubuntu focal/main s390x libblas3 s390x 3.9.0-1 [124 kB] Get:155 http://ftpmaster.internal/ubuntu focal/main s390x liblapack3 s390x 3.9.0-1 [1707 kB] Get:156 http://ftpmaster.internal/ubuntu focal/universe s390x libarpack2 s390x 3.7.0-3 [77.5 kB] Get:157 http://ftpmaster.internal/ubuntu focal/main s390x libroken18-heimdal s390x 7.7.0+dfsg-1 [40.0 kB] Get:158 http://ftpmaster.internal/ubuntu focal/main s390x libasn1-8-heimdal s390x 7.7.0+dfsg-1 [148 kB] Get:159 http://ftpmaster.internal/ubuntu focal/main s390x libasound2-data all 1.1.9-0ubuntu1 [42.0 kB] Get:160 http://ftpmaster.internal/ubuntu focal/main s390x libasound2 s390x 1.1.9-0ubuntu1 [310 kB] Get:161 http://ftpmaster.internal/ubuntu focal/main s390x pkg-config s390x 0.29.1-0ubuntu3 [43.7 kB] Get:162 http://ftpmaster.internal/ubuntu focal/main s390x libffi-dev s390x 3.2.1-9 [154 kB] Get:163 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-bin s390x 2.63.3-1 [68.4 kB] Get:164 http://ftpmaster.internal/ubuntu focal/main s390x python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:165 http://ftpmaster.internal/ubuntu focal/main s390x python3-distutils all 3.8.0-1 [142 kB] Get:166 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-dev-bin s390x 2.63.3-1 [105 kB] Get:167 http://ftpmaster.internal/ubuntu focal/main s390x uuid-dev s390x 2.34-0.1ubuntu4 [33.8 kB] Get:168 http://ftpmaster.internal/ubuntu focal/main s390x libblkid-dev s390x 2.34-0.1ubuntu4 [159 kB] Get:169 http://ftpmaster.internal/ubuntu focal/main s390x libmount-dev s390x 2.34-0.1ubuntu4 [168 kB] Get:170 http://ftpmaster.internal/ubuntu focal/main s390x libpcre16-3 s390x 2:8.39-12 [79.0 kB] Get:171 http://ftpmaster.internal/ubuntu focal/main s390x libpcre32-3 s390x 2:8.39-12 [73.8 kB] Get:172 http://ftpmaster.internal/ubuntu focal/main s390x libpcrecpp0v5 s390x 2:8.39-12 [14.6 kB] Get:173 http://ftpmaster.internal/ubuntu focal/main s390x libpcre3-dev s390x 2:8.39-12 [373 kB] Get:174 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1-dev s390x 3.0-1 [303 kB] Get:175 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-16-0 s390x 10.34-7 [103 kB] Get:176 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-32-0 s390x 10.34-7 [95.6 kB] Get:177 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-posix2 s390x 10.34-7 [5872 B] Get:178 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-dev s390x 10.34-7 [485 kB] Get:179 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1-dev s390x 3.0-1 [148 kB] Get:180 http://ftpmaster.internal/ubuntu focal/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1ubuntu3 [173 kB] Get:181 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-dev s390x 2.63.3-1 [1423 kB] Get:182 http://ftpmaster.internal/ubuntu focal/main s390x libatk1.0-dev s390x 2.34.1-1ubuntu1 [94.6 kB] Get:183 http://ftpmaster.internal/ubuntu focal/main s390x libsigc++-2.0-0v5 s390x 2.10.2-1 [11.2 kB] Get:184 http://ftpmaster.internal/ubuntu focal/main s390x libglibmm-2.4-1v5 s390x 2.62.0-1 [519 kB] Get:185 http://ftpmaster.internal/ubuntu focal/main s390x libatkmm-1.6-1v5 s390x 2.28.0-2 [61.2 kB] Get:186 http://ftpmaster.internal/ubuntu focal/main s390x libsigc++-2.0-dev s390x 2.10.2-1 [64.5 kB] Get:187 http://ftpmaster.internal/ubuntu focal/main s390x libglibmm-2.4-dev s390x 2.62.0-1 [442 kB] Get:188 http://ftpmaster.internal/ubuntu focal/main s390x libatkmm-1.6-dev s390x 2.28.0-2 [33.1 kB] Get:189 http://ftpmaster.internal/ubuntu focal/main s390x x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:190 http://ftpmaster.internal/ubuntu focal/main s390x libice6 s390x 2:1.0.10-0ubuntu1 [36.8 kB] Get:191 http://ftpmaster.internal/ubuntu focal/main s390x libsm6 s390x 2:1.2.3-1 [15.2 kB] Get:192 http://ftpmaster.internal/ubuntu focal/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:193 http://ftpmaster.internal/ubuntu focal/universe s390x libaudio2 s390x 1.9.4-6build1 [47.4 kB] Get:194 http://ftpmaster.internal/ubuntu focal/main s390x libblas-dev s390x 3.9.0-1 [127 kB] Get:195 http://ftpmaster.internal/ubuntu focal/main s390x libbrotli1 s390x 1.0.7-5 [260 kB] Get:196 http://ftpmaster.internal/ubuntu focal/main s390x libcairo-gobject2 s390x 1.16.0-4ubuntu1 [17.0 kB] Get:197 http://ftpmaster.internal/ubuntu focal/main s390x liblzo2-2 s390x 2.10-0.1 [46.9 kB] Get:198 http://ftpmaster.internal/ubuntu focal/main s390x libcairo-script-interpreter2 s390x 1.16.0-4ubuntu1 [50.1 kB] Get:199 http://ftpmaster.internal/ubuntu focal/main s390x libexpat1-dev s390x 2.2.9-1 [112 kB] Get:200 http://ftpmaster.internal/ubuntu focal/main s390x libpng-dev s390x 1.6.37-1 [171 kB] Get:201 http://ftpmaster.internal/ubuntu focal/main s390x libfreetype-dev s390x 2.10.1-2 [472 kB] Get:202 http://ftpmaster.internal/ubuntu focal/main s390x libfreetype6-dev s390x 2.10.1-2 [9792 B] Get:203 http://ftpmaster.internal/ubuntu focal/main s390x libfontconfig1-dev s390x 2.13.1-2ubuntu2 [728 kB] Get:204 http://ftpmaster.internal/ubuntu focal/main s390x xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:205 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-dev all 2018.4-4 [251 kB] Get:206 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-core-dev all 2018.4-4 [2620 B] Get:207 http://ftpmaster.internal/ubuntu focal/main s390x libxau-dev s390x 1:1.0.9-0ubuntu1 [9328 B] Get:208 http://ftpmaster.internal/ubuntu focal/main s390x libxdmcp-dev s390x 1:1.1.3-0ubuntu1 [25.3 kB] Get:209 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-input-dev all 2018.4-4 [2620 B] Get:210 http://ftpmaster.internal/ubuntu focal/main s390x xtrans-dev all 1.3.5-1build1 [70.7 kB] Get:211 http://ftpmaster.internal/ubuntu focal/main s390x libpthread-stubs0-dev s390x 0.4-1 [5384 B] Get:212 http://ftpmaster.internal/ubuntu focal/main s390x libxcb1-dev s390x 1.13.1-2 [78.1 kB] Get:213 http://ftpmaster.internal/ubuntu focal/main s390x libx11-dev s390x 2:1.6.8-1 [613 kB] Get:214 http://ftpmaster.internal/ubuntu focal/main s390x libxrender-dev s390x 1:0.9.10-1 [24.1 kB] Get:215 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-xext-dev all 2018.4-4 [2620 B] Get:216 http://ftpmaster.internal/ubuntu focal/main s390x libxext-dev s390x 2:1.3.4-0ubuntu1 [80.2 kB] Get:217 http://ftpmaster.internal/ubuntu focal/main s390x libice-dev s390x 2:1.0.10-0ubuntu1 [44.0 kB] Get:218 http://ftpmaster.internal/ubuntu focal/main s390x libsm-dev s390x 2:1.2.3-1 [16.3 kB] Get:219 http://ftpmaster.internal/ubuntu focal/main s390x libpixman-1-dev s390x 0.38.4-0ubuntu1 [151 kB] Get:220 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-render0-dev s390x 1.13.1-2 [18.2 kB] Get:221 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-shm0-dev s390x 1.13.1-2 [6648 B] Get:222 http://ftpmaster.internal/ubuntu focal/main s390x libcairo2-dev s390x 1.16.0-4ubuntu1 [574 kB] Get:223 http://ftpmaster.internal/ubuntu focal/main s390x libcairomm-1.0-1v5 s390x 1.12.2-4 [36.1 kB] Get:224 http://ftpmaster.internal/ubuntu focal/main s390x libcairomm-1.0-dev s390x 1.12.2-4 [590 kB] Get:225 http://ftpmaster.internal/ubuntu focal/main s390x libcamd2 s390x 1:5.6.0+dfsg-2 [21.8 kB] Get:226 http://ftpmaster.internal/ubuntu focal/main s390x libccolamd2 s390x 1:5.6.0+dfsg-2 [22.7 kB] Get:227 http://ftpmaster.internal/ubuntu focal/main s390x libcolamd2 s390x 1:5.6.0+dfsg-2 [16.8 kB] Get:228 http://ftpmaster.internal/ubuntu focal/main s390x libmetis5 s390x 5.1.0.dfsg-5 [151 kB] Get:229 http://ftpmaster.internal/ubuntu focal/main s390x libcholmod3 s390x 1:5.6.0+dfsg-2 [308 kB] Get:230 http://ftpmaster.internal/ubuntu focal/main s390x libheimbase1-heimdal s390x 7.7.0+dfsg-1 [27.8 kB] Get:231 http://ftpmaster.internal/ubuntu focal/main s390x libhcrypto4-heimdal s390x 7.7.0+dfsg-1 [83.1 kB] Get:232 http://ftpmaster.internal/ubuntu focal/main s390x libwind0-heimdal s390x 7.7.0+dfsg-1 [47.4 kB] Get:233 http://ftpmaster.internal/ubuntu focal/main s390x libhx509-5-heimdal s390x 7.7.0+dfsg-1 [98.2 kB] Get:234 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5-26-heimdal s390x 7.7.0+dfsg-1 [191 kB] Get:235 http://ftpmaster.internal/ubuntu focal/main s390x libheimntlm0-heimdal s390x 7.7.0+dfsg-1 [14.5 kB] Get:236 http://ftpmaster.internal/ubuntu focal/main s390x libgssapi3-heimdal s390x 7.7.0+dfsg-1 [87.6 kB] Get:237 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2 [14.6 kB] Get:238 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-2 s390x 2.1.27+dfsg-2 [47.7 kB] Get:239 http://ftpmaster.internal/ubuntu focal/main s390x libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:240 http://ftpmaster.internal/ubuntu focal/main s390x libldap-2.4-2 s390x 2.4.48+dfsg-1ubuntu3 [145 kB] Get:241 http://ftpmaster.internal/ubuntu focal/main s390x libnghttp2-14 s390x 1.40.0-1 [74.1 kB] Get:242 http://ftpmaster.internal/ubuntu focal/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build1 [50.9 kB] Get:243 http://ftpmaster.internal/ubuntu focal/main s390x libssh-4 s390x 0.9.0-1ubuntu5 [180 kB] Get:244 http://ftpmaster.internal/ubuntu focal/main s390x libcurl3-gnutls s390x 7.66.0-1ubuntu1 [215 kB] Get:245 http://ftpmaster.internal/ubuntu focal/main s390x libcxsparse3 s390x 1:5.6.0+dfsg-2 [64.3 kB] Get:246 http://ftpmaster.internal/ubuntu focal/main s390x libdatrie-dev s390x 0.2.12-3 [17.6 kB] Get:247 http://ftpmaster.internal/ubuntu focal/universe s390x libdouble-conversion3 s390x 3.1.5-3 [35.8 kB] Get:248 http://ftpmaster.internal/ubuntu focal/main s390x libdrm-amdgpu1 s390x 2.4.100-4 [17.6 kB] Get:249 http://ftpmaster.internal/ubuntu focal/main s390x libdrm-radeon1 s390x 2.4.100-4 [19.5 kB] Get:250 http://ftpmaster.internal/ubuntu focal/main s390x libdrm-nouveau2 s390x 2.4.100-4 [15.3 kB] Get:251 http://ftpmaster.internal/ubuntu focal/main s390x libdrm-dev s390x 2.4.100-4 [122 kB] Get:252 http://ftpmaster.internal/ubuntu focal/main s390x libwayland-server0 s390x 1.17.0-1 [27.9 kB] Get:253 http://ftpmaster.internal/ubuntu focal/main s390x libgbm1 s390x 19.2.4-1ubuntu1 [27.5 kB] Get:254 http://ftpmaster.internal/ubuntu focal/main s390x libglapi-mesa s390x 19.2.4-1ubuntu1 [43.2 kB] Get:255 http://ftpmaster.internal/ubuntu focal/main s390x libwayland-client0 s390x 1.17.0-1 [22.2 kB] Get:256 http://ftpmaster.internal/ubuntu focal/main s390x libx11-xcb1 s390x 2:1.6.8-1 [9172 B] Get:257 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-dri2-0 s390x 1.13.1-2 [6840 B] Get:258 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-dri3-0 s390x 1.13.1-2 [6548 B] Get:259 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-present0 s390x 1.13.1-2 [5400 B] Get:260 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-sync1 s390x 1.13.1-2 [8620 B] Get:261 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-xfixes0 s390x 1.13.1-2 [9136 B] Get:262 http://ftpmaster.internal/ubuntu focal/main s390x libxshmfence1 s390x 1.3-1 [5032 B] Get:263 http://ftpmaster.internal/ubuntu focal/main s390x libegl-mesa0 s390x 19.2.4-1ubuntu1 [87.0 kB] Get:264 http://ftpmaster.internal/ubuntu focal/main s390x libfftw3-long3 s390x 3.3.8-2ubuntu1 [572 kB] Get:265 http://ftpmaster.internal/ubuntu focal/main s390x libfftw3-single3 s390x 3.3.8-2ubuntu1 [452 kB] Get:266 http://ftpmaster.internal/ubuntu focal/main s390x libfftw3-bin s390x 3.3.8-2ubuntu1 [27.9 kB] Get:267 http://ftpmaster.internal/ubuntu focal/main s390x libfftw3-dev s390x 3.3.8-2ubuntu1 [1341 kB] Get:268 http://ftpmaster.internal/ubuntu focal/main s390x libogg0 s390x 1.3.4-0ubuntu1 [23.1 kB] Get:269 http://ftpmaster.internal/ubuntu focal/main s390x libflac8 s390x 1.3.3-1 [88.0 kB] Get:270 http://ftpmaster.internal/ubuntu focal/universe s390x libfltk1.3 s390x 1.3.4-10 [519 kB] Get:271 http://ftpmaster.internal/ubuntu focal/main s390x libglvnd0 s390x 1.1.1-0ubuntu1 [81.9 kB] Get:272 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-glx0 s390x 1.13.1-2 [22.2 kB] Get:273 http://ftpmaster.internal/ubuntu focal/main s390x libxxf86vm1 s390x 1:1.1.4-1build1 [9544 B] Get:274 http://ftpmaster.internal/ubuntu focal/main s390x libllvm9 s390x 1:9.0.1-2 [16.0 MB] Get:275 http://ftpmaster.internal/ubuntu focal/main s390x libsensors-config all 1:3.6.0-2ubuntu1 [6092 B] Get:276 http://ftpmaster.internal/ubuntu focal/main s390x libsensors5 s390x 1:3.6.0-2ubuntu1 [25.6 kB] Get:277 http://ftpmaster.internal/ubuntu focal/main s390x libgl1-mesa-dri s390x 19.2.4-1ubuntu1 [5188 kB] Get:278 http://ftpmaster.internal/ubuntu focal/main s390x libglx-mesa0 s390x 19.2.4-1ubuntu1 [140 kB] Get:279 http://ftpmaster.internal/ubuntu focal/main s390x libglx0 s390x 1.1.1-0ubuntu1 [25.1 kB] Get:280 http://ftpmaster.internal/ubuntu focal/main s390x libgl1 s390x 1.1.1-0ubuntu1 [125 kB] Get:281 http://ftpmaster.internal/ubuntu focal/universe s390x libfltk-gl1.3 s390x 1.3.4-10 [35.3 kB] Get:282 http://ftpmaster.internal/ubuntu focal/main s390x libfribidi-dev s390x 1.0.7-1.1 [63.4 kB] Get:283 http://ftpmaster.internal/ubuntu focal/main s390x libgdk-pixbuf2.0-bin s390x 2.40.0+dfsg-2 [13.4 kB] Get:284 http://ftpmaster.internal/ubuntu focal/main s390x libgdk-pixbuf2.0-dev s390x 2.40.0+dfsg-2 [43.6 kB] Get:285 http://ftpmaster.internal/ubuntu focal/universe s390x libgl2ps1.4 s390x 1.4.0+dfsg1-2 [34.6 kB] Get:286 http://ftpmaster.internal/ubuntu focal/main s390x libgles1 s390x 1.1.1-0ubuntu1 [13.6 kB] Get:287 http://ftpmaster.internal/ubuntu focal/universe s390x libglpk40 s390x 4.65-2 [331 kB] Get:288 http://ftpmaster.internal/ubuntu focal/main s390x libglu1-mesa s390x 9.0.1-1 [155 kB] Get:289 http://ftpmaster.internal/ubuntu focal/main s390x mesa-common-dev s390x 19.2.4-1ubuntu1 [649 kB] Get:290 http://ftpmaster.internal/ubuntu focal/main s390x libglvnd-core-dev s390x 1.1.1-0ubuntu1 [12.6 kB] Get:291 http://ftpmaster.internal/ubuntu focal/main s390x libegl1 s390x 1.1.1-0ubuntu1 [29.7 kB] Get:292 http://ftpmaster.internal/ubuntu focal/main s390x libgles2 s390x 1.1.1-0ubuntu1 [22.2 kB] Get:293 http://ftpmaster.internal/ubuntu focal/main s390x libopengl0 s390x 1.1.1-0ubuntu1 [44.5 kB] Get:294 http://ftpmaster.internal/ubuntu focal/main s390x libglvnd-dev s390x 1.1.1-0ubuntu1 [3408 B] Get:295 http://ftpmaster.internal/ubuntu focal/main s390x libx11-xcb-dev s390x 2:1.6.8-1 [9760 B] Get:296 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-dri3-dev s390x 1.13.1-2 [7404 B] Get:297 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-randr0 s390x 1.13.1-2 [16.5 kB] Get:298 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-randr0-dev s390x 1.13.1-2 [20.6 kB] Get:299 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-shape0 s390x 1.13.1-2 [5808 B] Get:300 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-shape0-dev s390x 1.13.1-2 [7108 B] Get:301 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-xfixes0-dev s390x 1.13.1-2 [11.6 kB] Get:302 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-sync-dev s390x 1.13.1-2 [10.6 kB] Get:303 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-present-dev s390x 1.13.1-2 [6916 B] Get:304 http://ftpmaster.internal/ubuntu focal/main s390x libxshmfence-dev s390x 1.3-1 [3704 B] Get:305 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-dri2-0-dev s390x 1.13.1-2 [8544 B] Get:306 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-glx0-dev s390x 1.13.1-2 [28.1 kB] Get:307 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:308 http://ftpmaster.internal/ubuntu focal/main s390x libxfixes-dev s390x 1:5.0.3-1 [10.7 kB] Get:309 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:310 http://ftpmaster.internal/ubuntu focal/main s390x libxdamage-dev s390x 1:1.1.5-1 [4960 B] Get:311 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:312 http://ftpmaster.internal/ubuntu focal/main s390x libxxf86vm-dev s390x 1:1.1.4-1build1 [12.7 kB] Get:313 http://ftpmaster.internal/ubuntu focal/main s390x libgl1-mesa-dev s390x 19.2.4-1ubuntu1 [6176 B] Get:314 http://ftpmaster.internal/ubuntu focal/main s390x libglu1-mesa-dev s390x 9.0.1-1 [191 kB] Get:315 http://ftpmaster.internal/ubuntu focal/main s390x libwmf0.2-7 s390x 0.2.8.4-15ubuntu1 [138 kB] Get:316 http://ftpmaster.internal/ubuntu focal/universe s390x libgraphicsmagick-q16-3 s390x 1.4+really1.3.34+hg16181-1 [1002 kB] Get:317 http://ftpmaster.internal/ubuntu focal/universe s390x libgraphicsmagick++-q16-12 s390x 1.4+really1.3.34+hg16181-1 [96.2 kB] Get:318 http://ftpmaster.internal/ubuntu focal/main s390x libgraphite2-dev s390x 1.3.13-11 [14.7 kB] Get:319 http://ftpmaster.internal/ubuntu focal/universe s390x libgslcblas0 s390x 2.5+dfsg-6 [72.7 kB] Get:320 http://ftpmaster.internal/ubuntu focal/universe s390x libgsl23 s390x 2.5+dfsg-6 [747 kB] Get:321 http://ftpmaster.internal/ubuntu focal/universe s390x libgsl-dev s390x 2.5+dfsg-6 [934 kB] Get:322 http://ftpmaster.internal/ubuntu focal/main s390x libharfbuzz-icu0 s390x 2.6.4-1ubuntu1 [5420 B] Get:323 http://ftpmaster.internal/ubuntu focal/main s390x libharfbuzz-gobject0 s390x 2.6.4-1ubuntu1 [20.4 kB] Get:324 http://ftpmaster.internal/ubuntu focal/main s390x libicu-dev s390x 63.2-2 [8890 kB] Get:325 http://ftpmaster.internal/ubuntu focal/main s390x libharfbuzz-dev s390x 2.6.4-1ubuntu1 [505 kB] Get:326 http://ftpmaster.internal/ubuntu focal/main s390x libthai-dev s390x 0.1.28-3 [24.5 kB] Get:327 http://ftpmaster.internal/ubuntu focal/main s390x libxft-dev s390x 2.3.3-0ubuntu1 [47.2 kB] Get:328 http://ftpmaster.internal/ubuntu focal/main s390x pango1.0-tools s390x 1.44.7-1 [25.9 kB] Get:329 http://ftpmaster.internal/ubuntu focal/main s390x libpango1.0-dev s390x 1.44.7-1 [132 kB] Get:330 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-xinerama-dev all 2018.4-4 [2628 B] Get:331 http://ftpmaster.internal/ubuntu focal/main s390x libxinerama-dev s390x 2:1.1.4-2 [7720 B] Get:332 http://ftpmaster.internal/ubuntu focal/main s390x libxi-dev s390x 2:1.7.10-0ubuntu1 [184 kB] Get:333 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-randr-dev all 2018.4-4 [2620 B] Get:334 http://ftpmaster.internal/ubuntu focal/main s390x libxrandr-dev s390x 2:1.5.2-0ubuntu1 [23.5 kB] Get:335 http://ftpmaster.internal/ubuntu focal/main s390x libxcursor-dev s390x 1:1.2.0-2 [26.7 kB] Get:336 http://ftpmaster.internal/ubuntu focal/main s390x x11proto-composite-dev all 1:2018.4-4 [2620 B] Get:337 http://ftpmaster.internal/ubuntu focal/main s390x libxcomposite-dev s390x 1:0.4.5-0ubuntu1 [9008 B] Get:338 http://ftpmaster.internal/ubuntu focal/main s390x libxml2-utils s390x 2.9.4+dfsg1-8ubuntu1 [34.4 kB] Get:339 http://ftpmaster.internal/ubuntu focal/universe s390x libgtk2.0-dev s390x 2.24.32-4ubuntu4 [782 kB] Get:340 http://ftpmaster.internal/ubuntu focal/universe s390x libpangox-1.0-0 s390x 0.0.2-5build1 [41.0 kB] Get:341 http://ftpmaster.internal/ubuntu focal/main s390x libxmu6 s390x 2:1.1.3-0ubuntu1 [42.7 kB] Get:342 http://ftpmaster.internal/ubuntu focal/universe s390x libgtkglext1 s390x 1.2.0-9 [74.0 kB] Get:343 http://ftpmaster.internal/ubuntu focal/universe s390x libpangox-1.0-dev s390x 0.0.2-5build1 [41.6 kB] Get:344 http://ftpmaster.internal/ubuntu focal/main s390x libxt-dev s390x 1:1.1.5-1 [386 kB] Get:345 http://ftpmaster.internal/ubuntu focal/main s390x libxmu-headers all 2:1.1.3-0ubuntu1 [54.2 kB] Get:346 http://ftpmaster.internal/ubuntu focal/main s390x libxmu-dev s390x 2:1.1.3-0ubuntu1 [47.1 kB] Get:347 http://ftpmaster.internal/ubuntu focal/universe s390x libgtkglext1-dev s390x 1.2.0-9 [360 kB] Get:348 http://ftpmaster.internal/ubuntu focal/main s390x libpangomm-1.4-1v5 s390x 2.42.0-2 [42.7 kB] Get:349 http://ftpmaster.internal/ubuntu focal/main s390x libgtkmm-2.4-1v5 s390x 1:2.24.5-4ubuntu1 [664 kB] Get:350 http://ftpmaster.internal/ubuntu focal/main s390x libpangomm-1.4-dev s390x 2.42.0-2 [49.7 kB] Get:351 http://ftpmaster.internal/ubuntu focal/universe s390x libgtkmm-2.4-dev s390x 1:2.24.5-4ubuntu1 [499 kB] Get:352 http://ftpmaster.internal/ubuntu focal/main s390x libgudev-1.0-0 s390x 1:233-1 [13.1 kB] Get:353 http://ftpmaster.internal/ubuntu focal/universe s390x libsz2 s390x 1.0.4-1 [5056 B] Get:354 http://ftpmaster.internal/ubuntu focal/universe s390x libhdf5-103 s390x 1.10.4+repack-10 [1127 kB] Get:355 http://ftpmaster.internal/ubuntu focal/universe s390x libhdf5-cpp-103 s390x 1.10.4+repack-10 [106 kB] Get:356 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-turbo8-dev s390x 2.0.3-0ubuntu1 [214 kB] Get:357 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:358 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:359 http://ftpmaster.internal/ubuntu focal/universe s390x libaec-dev s390x 1.0.4-1 [17.5 kB] Get:360 http://ftpmaster.internal/ubuntu focal/universe s390x libhdf5-dev s390x 1.10.4+repack-10 [2374 kB] Get:361 http://ftpmaster.internal/ubuntu focal/main s390x libevdev2 s390x 1.8.0+dfsg-2 [29.6 kB] Get:362 http://ftpmaster.internal/ubuntu focal/main s390x libwacom-common all 1.1-2build3 [41.2 kB] Get:363 http://ftpmaster.internal/ubuntu focal/main s390x libwacom2 s390x 1.1-2build3 [18.3 kB] Get:364 http://ftpmaster.internal/ubuntu focal/main s390x libinput-bin s390x 1.14.3-1build1 [14.2 kB] Get:365 http://ftpmaster.internal/ubuntu focal/main s390x libmtdev1 s390x 1.1.5-1ubuntu3 [13.7 kB] Get:366 http://ftpmaster.internal/ubuntu focal/main s390x libinput10 s390x 1.14.3-1build1 [97.9 kB] Get:367 http://ftpmaster.internal/ubuntu focal/main s390x libsamplerate0 s390x 0.1.9-2 [886 kB] Get:368 http://ftpmaster.internal/ubuntu focal/main s390x libjack-jackd2-0 s390x 1.9.12~dfsg-2build2 [244 kB] Get:369 http://ftpmaster.internal/ubuntu focal/main s390x liblapack-dev s390x 3.9.0-1 [3338 kB] Get:370 http://ftpmaster.internal/ubuntu focal/universe s390x libmng2 s390x 2.0.3+dfsg-3 [149 kB] Get:371 http://ftpmaster.internal/ubuntu focal/main s390x libncurses-dev s390x 6.1+20191019-1ubuntu1 [318 kB] Get:372 http://ftpmaster.internal/ubuntu focal/universe s390x libqrupdate1 s390x 1.1.2-3 [30.4 kB] Get:373 http://ftpmaster.internal/ubuntu focal/main s390x libumfpack5 s390x 1:5.6.0+dfsg-2 [200 kB] Get:374 http://ftpmaster.internal/ubuntu focal/universe s390x liboctave7 s390x 5.1.0-4build1 [6648 kB] Get:375 http://ftpmaster.internal/ubuntu focal/universe s390x libportaudio2 s390x 19.6.0-1 [58.9 kB] Get:376 http://ftpmaster.internal/ubuntu focal/universe s390x libqhull7 s390x 2015.2-4 [134 kB] Get:377 http://ftpmaster.internal/ubuntu focal/universe s390x libqscintilla2-qt5-l10n all 2.11.2+dfsg-5 [41.3 kB] Get:378 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5core5a s390x 5.12.5+dfsg-2 [2061 kB] Get:379 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5dbus5 s390x 5.12.5+dfsg-2 [191 kB] Get:380 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5network5 s390x 5.12.5+dfsg-2 [610 kB] Get:381 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-icccm4 s390x 0.4.1-1.1 [10.7 kB] Get:382 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-util1 s390x 0.4.0-0ubuntu3 [11.2 kB] Get:383 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-image0 s390x 0.4.0-1build1 [12.3 kB] Get:384 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-keysyms1 s390x 0.4.0-1build1 [8400 B] Get:385 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-render-util0 s390x 0.3.9-1build1 [9560 B] Get:386 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-xinerama0 s390x 1.13.1-2 [5192 B] Get:387 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-xinput0 s390x 1.13.1-2 [28.8 kB] Get:388 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-xkb1 s390x 1.13.1-2 [27.8 kB] Get:389 http://ftpmaster.internal/ubuntu focal/main s390x libxkbcommon0 s390x 0.9.1-1 [91.0 kB] Get:390 http://ftpmaster.internal/ubuntu focal/main s390x libxkbcommon-x11-0 s390x 0.9.1-1 [13.3 kB] Get:391 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5gui5 s390x 5.12.5+dfsg-2 [3028 kB] Get:392 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5widgets5 s390x 5.12.5+dfsg-2 [2135 kB] Get:393 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5printsupport5 s390x 5.12.5+dfsg-2 [184 kB] Get:394 http://ftpmaster.internal/ubuntu focal/universe s390x libqscintilla2-qt5-15 s390x 2.11.2+dfsg-5 [1210 kB] Get:395 http://ftpmaster.internal/ubuntu focal/universe s390x qtcore4-l10n all 4:4.8.7+dfsg-7ubuntu3 [617 kB] Get:396 http://ftpmaster.internal/ubuntu focal/universe s390x libqtcore4 s390x 4:4.8.7+dfsg-7ubuntu3 [1470 kB] Get:397 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-xml s390x 4:4.8.7+dfsg-7ubuntu3 [96.8 kB] Get:398 http://ftpmaster.internal/ubuntu focal/universe s390x libqtdbus4 s390x 4:4.8.7+dfsg-7ubuntu3 [176 kB] Get:399 http://ftpmaster.internal/ubuntu focal/universe s390x qtchooser s390x 66-2 [23.2 kB] Get:400 http://ftpmaster.internal/ubuntu focal/universe s390x qdbus s390x 4:4.8.7+dfsg-7ubuntu3 [29.4 kB] Get:401 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-dbus s390x 4:4.8.7+dfsg-7ubuntu3 [6528 B] Get:402 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-network s390x 4:4.8.7+dfsg-7ubuntu3 [522 kB] Get:403 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-script s390x 4:4.8.7+dfsg-7ubuntu3 [664 kB] Get:404 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-sql s390x 4:4.8.7+dfsg-7ubuntu3 [96.4 kB] Get:405 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-xmlpatterns s390x 4:4.8.7+dfsg-7ubuntu3 [1023 kB] Get:406 http://ftpmaster.internal/ubuntu focal/universe s390x libqtgui4 s390x 4:4.8.7+dfsg-7ubuntu3 [3829 kB] Get:407 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-declarative s390x 4:4.8.7+dfsg-7ubuntu3 [1035 kB] Get:408 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-designer s390x 4:4.8.7+dfsg-7ubuntu3 [3551 kB] Get:409 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-qt3support s390x 4:4.8.7+dfsg-7ubuntu3 [993 kB] Get:410 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-dev-bin s390x 4:4.8.7+dfsg-7ubuntu3 [1604 kB] Get:411 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-help s390x 4:4.8.7+dfsg-7ubuntu3 [196 kB] Get:412 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-scripttools s390x 4:4.8.7+dfsg-7ubuntu3 [218 kB] Get:413 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-svg s390x 4:4.8.7+dfsg-7ubuntu3 [131 kB] Get:414 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-test s390x 4:4.8.7+dfsg-7ubuntu3 [57.0 kB] Get:415 http://ftpmaster.internal/ubuntu focal/universe s390x qt4-linguist-tools s390x 4:4.8.7+dfsg-7ubuntu3 [817 kB] Get:416 http://ftpmaster.internal/ubuntu focal/universe s390x qt4-qmake s390x 4:4.8.7+dfsg-7ubuntu3 [1201 kB] Get:417 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-dev s390x 4:4.8.7+dfsg-7ubuntu3 [825 kB] Get:418 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-opengl s390x 4:4.8.7+dfsg-7ubuntu3 [278 kB] Get:419 http://ftpmaster.internal/ubuntu focal/universe s390x libqt4-opengl-dev s390x 4:4.8.7+dfsg-7ubuntu3 [22.8 kB] Get:420 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5sql5 s390x 5.12.5+dfsg-2 [112 kB] Get:421 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5help5 s390x 5.12.5-2 [121 kB] Get:422 http://ftpmaster.internal/ubuntu focal/universe s390x libqt5xml5 s390x 5.12.5+dfsg-2 [99.1 kB] Get:423 http://ftpmaster.internal/ubuntu focal/main s390x libreadline-dev s390x 8.0-3 [136 kB] Get:424 http://ftpmaster.internal/ubuntu focal/main s390x libvorbis0a s390x 1.3.6-2ubuntu1 [85.2 kB] Get:425 http://ftpmaster.internal/ubuntu focal/main s390x libvorbisenc2 s390x 1.3.6-2ubuntu1 [70.7 kB] Get:426 http://ftpmaster.internal/ubuntu focal/main s390x libsndfile1 s390x 1.0.28-6 [158 kB] Get:427 http://ftpmaster.internal/ubuntu focal/universe s390x libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:428 http://ftpmaster.internal/ubuntu focal/main s390x libxml-namespacesupport-perl all 1.12-1 [13.2 kB] Get:429 http://ftpmaster.internal/ubuntu focal/main s390x libxml-sax-base-perl all 1.09-1 [18.8 kB] Get:430 http://ftpmaster.internal/ubuntu focal/main s390x libxml-sax-perl all 1.02+dfsg-1 [56.2 kB] Get:431 http://ftpmaster.internal/ubuntu focal/main s390x libxml-libxml-perl s390x 2.0134+dfsg-1build1 [306 kB] Get:432 http://ftpmaster.internal/ubuntu focal/universe s390x matlab-support-dev all 0.0.21.1 [6400 B] Get:433 http://ftpmaster.internal/ubuntu focal/universe s390x texinfo s390x 6.6.0.dfsg.1-2ubuntu3 [785 kB] Get:434 http://ftpmaster.internal/ubuntu focal/universe s390x libeigen3-dev all 3.3.7-1 [814 kB] Get:435 http://ftpmaster.internal/ubuntu focal/universe s390x octave-common all 5.1.0-4build1 [5076 kB] Get:436 http://ftpmaster.internal/ubuntu focal/universe s390x octave s390x 5.1.0-4build1 [1822 kB] Get:437 http://ftpmaster.internal/ubuntu focal/universe s390x liboctave-dev s390x 5.1.0-4build1 [465 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 165 MB in 7s (23.3 MB/s) Selecting previously unselected package libpython3.7-minimal:s390x. (Reading database ... 14440 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.5-2_s390x.deb ... Unpacking libpython3.7-minimal:s390x (3.7.5-2) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.2.9-1_s390x.deb ... Unpacking libexpat1:s390x (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.5-2_s390x.deb ... Unpacking python3.7-minimal (3.7.5-2) ... Setting up libpython3.7-minimal:s390x (3.7.5-2) ... Setting up libexpat1:s390x (2.2.9-1) ... Setting up python3.7-minimal (3.7.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14689 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_s390x.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-2ubuntu1) ... Setting up libnghttp2-14:s390x (1.40.0-1) ... Setting up libmagic1:s390x (1:5.37-6) ... Setting up libsepol1-dev:s390x (3.0-1) ... Setting up bc (1.07.1-2build1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libfftw3-long3:s390x (3.3.8-2ubuntu1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up xkb-data (2.26-2ubuntu2) ... Setting up liblzo2-2:s390x (2.10-0.1) ... Setting up libqhull7:s390x (2015.2-4) ... Setting up libmetis5:s390x (5.1.0.dfsg-5) ... Setting up file (1:5.37-6) ... Setting up libreadline-dev:s390x (8.0-3) ... Setting up libffi-dev:s390x (3.2.1-9) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libpthread-stubs0-dev:s390x (0.4-1) ... Setting up libjbig0:s390x (2.1-3.1build1) ... Setting up octave-common (5.1.0-4build1) ... Setting up libpcre2-16-0:s390x (10.34-7) ... Setting up libaec0:s390x (1.0.4-1) ... Setting up libicu63:s390x (63.2-2) ... Setting up libopengl0:s390x (1.1.1-0ubuntu1) ... Setting up libflac8:s390x (1.3.3-1) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2) ... Setting up libpython2.7-stdlib:s390x (2.7.17-1) ... Setting up libasound2-data (1.1.9-0ubuntu1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up xtrans-dev (1.3.5-1build1) ... Setting up libgraphite2-dev:s390x (1.3.13-11) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:s390x (10.34-7) ... Setting up libblas3:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libglib2.0-data (2.63.3-1) ... Setting up libgles2:s390x (1.1.1-0ubuntu1) ... Setting up libexpat1-dev:s390x (2.2.9-1) ... Setting up libfreetype6:s390x (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libgsl23:s390x (2.5+dfsg-6) ... Setting up libsigc++-2.0-0v5:s390x (2.10.2-1) ... Setting up uuid-dev:s390x (2.34-0.1ubuntu4) ... Setting up libavahi-common-data:s390x (0.7-4ubuntu6) ... Setting up libgles1:s390x (1.1.1-0ubuntu1) ... Setting up libdbus-1-3:s390x (1.12.16-2ubuntu2) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libfribidi0:s390x (1.0.7-1.1) ... Setting up libpcre32-3:s390x (2:8.39-12) ... Setting up libvorbis0a:s390x (1.3.6-2ubuntu1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libpcre2-posix2:s390x (10.34-7) ... Setting up libsensors5:s390x (1:3.6.0-2ubuntu1) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libjpeg-turbo8:s390x (2.0.3-0ubuntu1) ... Setting up libqt5core5a:s390x (5.12.5+dfsg-2) ... Setting up libltdl7:s390x (2.4.6-11) ... Setting up libfftw3-double3:s390x (3.3.8-2ubuntu1) ... Setting up libglapi-mesa:s390x (19.2.4-1ubuntu1) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2) ... Setting up libgfortran5:s390x (9.2.1-21ubuntu1) ... Setting up libmtdev1:s390x (1.1.5-1ubuntu3) ... Setting up libroken18-heimdal:s390x (7.7.0+dfsg-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Setting up libatk1.0-data (2.34.1-1ubuntu1) ... Setting up libdatrie-dev:s390x (0.2.12-3) ... Setting up liblqr-1-0:s390x (0.4.2-2.1) ... Setting up libxshmfence1:s390x (1.3-1) ... Setting up libqt5dbus5:s390x (5.12.5+dfsg-2) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libasound2:s390x (1.1.9-0ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:s390x (2.6.4-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up libgirepository-1.0-1:s390x (1.62.0-2) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libgtk2.0-common (2.24.32-4ubuntu4) ... Setting up libcxsparse3:s390x (1:5.6.0+dfsg-2) ... Setting up libatk1.0-0:s390x (2.34.1-1ubuntu1) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libmpdec2:s390x (2.4.2-2) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libsamplerate0:s390x (0.1.9-2) ... Setting up libwebpmux3:s390x (0.6.1-2) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libdrm-common (2.4.100-4) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libevdev2:s390x (1.8.0+dfsg-2) ... Setting up libicu-dev:s390x (63.2-2) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu1) ... Setting up libsuitesparseconfig5:s390x (1:5.6.0+dfsg-2) ... Setting up libgudev-1.0-0:s390x (1:233-1) ... Setting up qtchooser (66-2) ... Setting up libblas-dev:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up libsz2:s390x (1.0.4-1) ... Setting up libvorbisenc2:s390x (1.3.6-2ubuntu1) ... Setting up libheimbase1-heimdal:s390x (7.7.0+dfsg-1) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-7ubuntu3) ... Setting up libwacom-common (1.1-2build3) ... Setting up libxkbcommon0:s390x (0.9.1-1) ... Setting up matlab-support-dev (0.0.21.1) ... Setting up libwayland-client0:s390x (1.17.0-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libglibmm-2.4-1v5:s390x (2.62.0-1) ... Setting up libblkid-dev:s390x (2.34-0.1ubuntu4) ... Setting up libamd2:s390x (1:5.6.0+dfsg-2) ... Setting up libice6:s390x (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:s390x (2.0.3-0ubuntu1) ... Setting up libmng2:s390x (2.0.3+dfsg-3) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu1) ... Setting up libpython3.7-stdlib:s390x (3.7.5-2) ... Setting up liblapack3:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.13.1-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libharfbuzz-icu0:s390x (2.6.4-1ubuntu1) ... Setting up libxcb-xfixes0:s390x (1.13.1-2) ... Setting up libxau-dev:s390x (1:1.0.9-0ubuntu1) ... Setting up libcolamd2:s390x (1:5.6.0+dfsg-2) ... Setting up libpcre2-dev:s390x (10.34-7) ... Setting up python2.7 (2.7.17-1) ... Setting up libxcb-xinput0:s390x (1.13.1-2) ... Setting up libice-dev:s390x (2:1.0.10-0ubuntu1) ... Setting up libtool (2.4.6-11) ... Setting up libpython2-stdlib:s390x (2.7.17-1) ... Setting up libxcb-render0:s390x (1.13.1-2) ... Setting up libxshmfence-dev:s390x (1.3-1) ... Setting up libfftw3-bin (3.3.8-2ubuntu1) ... Setting up libselinux1-dev:s390x (3.0-1) ... Setting up libpcre3-dev:s390x (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up x11proto-randr-dev (2018.4-4) ... Setting up libfribidi-dev:s390x (1.0.7-1.1) ... Setting up libxcb-glx0:s390x (1.13.1-2) ... Setting up libasn1-8-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libedit2:s390x (3.1-20191211-1) ... Setting up libpng-dev:s390x (1.6.37-1) ... Setting up libxcb-keysyms1:s390x (0.4.0-1build1) ... Setting up libaec-dev:s390x (1.0.4-1) ... Setting up libarpack2:s390x (3.7.0-3) ... Setting up libxcb-shape0:s390x (1.13.1-2) ... Setting up libavahi-common3:s390x (0.7-4ubuntu6) ... Setting up libgfortran-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up libglib2.0-bin (2.63.3-1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-render-util0:s390x (0.3.9-1build1) ... Setting up libxcb-shm0:s390x (1.13.1-2) ... Setting up libxcb-icccm4:s390x (0.4.1-1.1) ... Setting up libharfbuzz-gobject0:s390x (2.6.4-1ubuntu1) ... Setting up libqrupdate1:s390x (1.1.2-3) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:s390x (7.7.0+dfsg-1) ... Setting up x11proto-xinerama-dev (2018.4-4) ... Setting up python2 (2.7.17-1) ... Setting up libqt5network5:s390x (5.12.5+dfsg-2) ... Setting up libxcb-util1:s390x (0.4.0-0ubuntu3) ... Setting up libxcb-xkb1:s390x (1.13.1-2) ... Setting up libxcb-image0:s390x (0.4.0-1build1) ... Setting up libfreetype-dev:s390x (2.10.1-2) ... Setting up libxcb-present0:s390x (1.13.1-2) ... Setting up libqt5sql5:s390x (5.12.5+dfsg-2) ... Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libsigc++-2.0-dev:s390x (2.10.2-1) ... Setting up libthai0:s390x (0.1.28-3) ... Setting up libcamd2:s390x (1:5.6.0+dfsg-2) ... Setting up libpython-stdlib:s390x (2.7.17-1) ... Setting up libxdmcp-dev:s390x (1:1.1.3-0ubuntu1) ... Setting up libwind0-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libqt5xml5:s390x (5.12.5+dfsg-2) ... Setting up libxcb-xinerama0:s390x (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up x11proto-composite-dev (1:2018.4-4) ... Setting up libglpk40:s390x (4.65-2) ... Setting up libxcb-sync1:s390x (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libhdf5-103:s390x (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:s390x (0.9.1-1) ... Setting up liblapack-dev:s390x (3.9.0-1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up x11proto-input-dev (2018.4-4) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqtcore4:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up gir1.2-glib-2.0:s390x (1.62.0-2) ... Setting up libssh-4:s390x (0.9.0-1ubuntu5) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up libthai-dev:s390x (0.1.28-3) ... Setting up libxml-libxml-perl (2.0134+dfsg-1build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:s390x (1.13.1-2) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libjack-jackd2-0:s390x (1.9.12~dfsg-2build2) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:s390x (2.4.100-4) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libccolamd2:s390x (1:5.6.0+dfsg-2) ... Setting up libxcb-randr0:s390x (1.13.1-2) ... Setting up libx11-6:s390x (2:1.6.8-1) ... Setting up libtiff5:s390x (4.1.0+git191117-1) ... Setting up libfontconfig1:s390x (2.13.1-2ubuntu2) ... Setting up libsndfile1:s390x (1.0.28-6) ... Setting up libatkmm-1.6-1v5:s390x (2.28.0-2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libxml2-utils (2.9.4+dfsg1-8ubuntu1) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:s390x (1.1-2build3) ... Setting up libxcomposite1:s390x (1:0.4.5-0ubuntu1) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up python (2.7.17-1) ... Setting up libfftw3-dev:s390x (3.3.8-2ubuntu1) ... Setting up libavahi-client3:s390x (0.7-4ubuntu6) ... Setting up libmount-dev:s390x (2.34-0.1ubuntu4) ... Setting up libcholmod3:s390x (1:5.6.0+dfsg-2) ... Setting up libllvm9:s390x (1:9.0.1-2) ... Setting up libpython3-stdlib:s390x (3.7.5-1ubuntu1) ... Setting up libdrm-amdgpu1:s390x (2.4.100-4) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:s390x (1.13.1-2) ... Setting up python3.7 (3.7.5-2) ... Setting up libportaudio2:s390x (19.6.0-1) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:s390x (2.4.100-4) ... Setting up gettext (0.19.8.1-10) ... Setting up gir1.2-freedesktop:s390x (1.62.0-2) ... Setting up libxdamage1:s390x (1:1.1.5-1) ... Setting up libxcb1-dev:s390x (1.13.1-2) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-21ubuntu1) ... Setting up libgbm1:s390x (19.2.4-1ubuntu1) ... Setting up libwmf0.2-7:s390x (0.2.8.4-15ubuntu1) ... Setting up gir1.2-atk-1.0:s390x (2.34.1-1ubuntu1) ... Setting up libsm-dev:s390x (2:1.2.3-1) ... Setting up libdrm-radeon1:s390x (2.4.100-4) ... Setting up libhx509-5-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libpango-1.0-0:s390x (1.44.7-1) ... Setting up libgl1-mesa-dri:s390x (19.2.4-1ubuntu1) ... Setting up libhdf5-cpp-103:s390x (1.10.4+repack-10) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up libx11-dev:s390x (2:1.6.8-1) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu1) ... Setting up libxcb-dri3-dev:s390x (1.13.1-2) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gir1.2-harfbuzz-0.0:s390x (2.6.4-1ubuntu1) ... Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:s390x (1.16.0-4ubuntu1) ... Setting up libfreetype6-dev:s390x (2.10.1-2) ... Setting up libxxf86vm1:s390x (1:1.1.4-1build1) ... Setting up libinput-bin (1.14.3-1build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt4-sql:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libcairomm-1.0-1v5:s390x (1.12.2-4) ... Setting up libxcb-shm0-dev:s390x (1.13.1-2) ... Setting up libmagickcore-6.q16-6:s390x (8:6.9.10.23+dfsg-2.1ubuntu10) ... Setting up libqt4-xml:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libegl-mesa0:s390x (19.2.4-1ubuntu1) ... Setting up libxcb-dri2-0-dev:s390x (1.13.1-2) ... Setting up libumfpack5:s390x (1:5.6.0+dfsg-2) ... Setting up libqt4-test:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libxfixes3:s390x (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:s390x (2.40.0+dfsg-2) ... Setting up libxinerama1:s390x (2:1.1.4-2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libxrandr2:s390x (2:1.5.2-0ubuntu1) ... Setting up libgraphicsmagick-q16-3 (1.4+really1.3.34+hg16181-1) ... Setting up libxcb-render0-dev:s390x (1.13.1-2) ... Setting up libxcb-glx0-dev:s390x (1.13.1-2) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up libaudio2:s390x (1.9.4-6build1) ... Setting up texinfo (6.6.0.dfsg.1-2ubuntu3) ... Setting up libxcb-shape0-dev:s390x (1.13.1-2) ... Setting up libxext-dev:s390x (2:1.3.4-0ubuntu1) ... Setting up libcups2:s390x (2.3.0-7) ... Setting up libgdk-pixbuf2.0-bin (2.40.0+dfsg-2) ... Setting up libegl1:s390x (1.1.1-0ubuntu1) ... Setting up libmagickwand-6.q16-6:s390x (8:6.9.10.23+dfsg-2.1ubuntu10) ... Setting up libxcb-sync-dev:s390x (1.13.1-2) ... Setting up libgraphicsmagick++-q16-12 (1.4+really1.3.34+hg16181-1) ... Setting up libcairo-gobject2:s390x (1.16.0-4ubuntu1) ... Setting up libxcb-xfixes0-dev:s390x (1.13.1-2) ... Setting up libpangoft2-1.0-0:s390x (1.44.7-1) ... Setting up libqtdbus4:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up libxrender-dev:s390x (1:0.9.10-1) ... Setting up libpangocairo-1.0-0:s390x (1.44.7-1) ... Setting up libkrb5-26-heimdal:s390x (7.7.0+dfsg-1) ... Setting up python3-distutils (3.8.0-1) ... Setting up libcairo-script-interpreter2:s390x (1.16.0-4ubuntu1) ... Setting up libglib2.0-dev-bin (2.63.3-1) ... Setting up libinput10:s390x (1.14.3-1build1) ... Setting up gtk-update-icon-cache (3.24.13-1ubuntu1) ... Setting up libx11-xcb-dev:s390x (2:1.6.8-1) ... Setting up libdrm-dev:s390x (2.4.100-4) ... Setting up libxft2:s390x (2.3.3-0ubuntu1) ... Setting up libxmu-headers (2:1.1.3-0ubuntu1) ... Setting up libxmu6:s390x (2:1.1.3-0ubuntu1) ... Setting up libfontconfig1-dev:s390x (2.13.1-2ubuntu2) ... Setting up libglx-mesa0:s390x (19.2.4-1ubuntu1) ... Setting up libpangox-1.0-0:s390x (0.0.2-5build1) ... Setting up libpangoxft-1.0-0:s390x (1.44.7-1) ... Setting up libxi6:s390x (2:1.7.10-0ubuntu1) ... Setting up libqt4-network:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libglx0:s390x (1.1.1-0ubuntu1) ... Setting up gir1.2-gdkpixbuf-2.0:s390x (2.40.0+dfsg-2) ... Setting up qt4-linguist-tools (4:4.8.7+dfsg-7ubuntu3) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:s390x (1:1.1.4-1build1) ... Setting up libxcursor1:s390x (1:1.2.0-2) ... Setting up pango1.0-tools (1.44.7-1) ... Setting up libheimntlm0-heimdal:s390x (7.7.0+dfsg-1) ... Setting up librsvg2-2:s390x (2.46.4-1ubuntu1) ... Setting up libxfixes-dev:s390x (1:5.0.3-1) ... Setting up gir1.2-pango-1.0:s390x (1.44.7-1) ... Setting up libxrandr-dev:s390x (2:1.5.2-0ubuntu1) ... Setting up libgl1:s390x (1.1.1-0ubuntu1) ... Setting up libglib2.0-dev:s390x (2.63.3-1) ... Setting up libgssapi3-heimdal:s390x (7.7.0+dfsg-1) ... Setting up libxcb-randr0-dev:s390x (1.13.1-2) ... Setting up libxt-dev:s390x (1:1.1.5-1) ... Setting up libqt4-xmlpatterns:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libglibmm-2.4-dev:s390x (2.62.0-1) ... Setting up libxcb-present-dev:s390x (1.13.1-2) ... Setting up libxinerama-dev:s390x (2:1.1.4-2) ... Setting up librsvg2-common:s390x (2.46.4-1ubuntu1) ... Setting up libpangomm-1.4-1v5:s390x (2.42.0-2) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu3) ... Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1ubuntu10) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libqt4-script:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up mesa-common-dev:s390x (19.2.4-1ubuntu1) ... Setting up libcairo2-dev:s390x (1.16.0-4ubuntu1) ... Setting up libglu1-mesa:s390x (9.0.1-1) ... Setting up libxi-dev:s390x (2:1.7.10-0ubuntu1) ... Setting up libatk1.0-dev:s390x (2.34.1-1ubuntu1) ... Setting up libxft-dev:s390x (2.3.3-0ubuntu1) ... Setting up libxdamage-dev:s390x (1:1.1.5-1) ... Setting up libharfbuzz-dev:s390x (2.6.4-1ubuntu1) ... Setting up libxcomposite-dev:s390x (1:0.4.5-0ubuntu1) ... Setting up libxcursor-dev:s390x (1:1.2.0-2) ... Setting up libfltk1.3:s390x (1.3.4-10) ... Setting up libfltk-gl1.3:s390x (1.3.4-10) ... Setting up libqt5gui5:s390x (5.12.5+dfsg-2) ... Setting up libldap-2.4-2:s390x (2.4.48+dfsg-1ubuntu3) ... Setting up libglvnd-dev:s390x (1.1.1-0ubuntu1) ... Setting up libcurl3-gnutls:s390x (7.66.0-1ubuntu1) ... Setting up libqt5widgets5:s390x (5.12.5+dfsg-2) ... Setting up libxmu-dev:s390x (2:1.1.3-0ubuntu1) ... Setting up libqt5help5:s390x (5.12.5-2) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up libgdk-pixbuf2.0-dev:s390x (2.40.0+dfsg-2) ... Setting up libqt5printsupport5:s390x (5.12.5+dfsg-2) ... Setting up liboctave7:s390x (5.1.0-4build1) ... Setting up libcairomm-1.0-dev:s390x (1.12.2-4) ... Setting up libpango1.0-dev:s390x (1.44.7-1) ... Setting up libqt4-dbus:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up imagemagick (8:6.9.10.23+dfsg-2.1ubuntu10) ... Setting up libatkmm-1.6-dev:s390x (2.28.0-2) ... Setting up libgl1-mesa-dev:s390x (19.2.4-1ubuntu1) ... Setting up libpangomm-1.4-dev:s390x (2.42.0-2) ... Setting up libpangox-1.0-dev (0.0.2-5build1) ... Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-5) ... Setting up libglu1-mesa-dev:s390x (9.0.1-1) ... Setting up octave (5.1.0-4build1) ... Setting up liboctave-dev (5.1.0-4build1) ... Setting up adwaita-icon-theme (3.34.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libqt4-declarative:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libgtk2.0-0:s390x (2.24.32-4ubuntu4) ... Setting up libgtkglext1:s390x (1.2.0-9) ... Setting up dh-autoreconf (19) ... Setting up humanity-icon-theme (0.6.15) ... Setting up gir1.2-gtk-2.0:s390x (2.24.32-4ubuntu4) ... Setting up libgtkmm-2.4-1v5:s390x (1:2.24.5-4ubuntu1) ... Setting up libgtk2.0-dev:s390x (2.24.32-4ubuntu4) ... Setting up libgtkmm-2.4-dev:s390x (1:2.24.5-4ubuntu1) ... Setting up libqtgui4:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libgtkglext1-dev:s390x (1.2.0-9) ... Setting up ubuntu-mono (19.04-0ubuntu2) ... Setting up libqt4-help:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up libqt4-designer:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-qt3support:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-scripttools:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-svg:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-opengl:s390x (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu3) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu3) ... Setting up sbuild-build-depends-mrtrix3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244-3ubuntu1) ... Processing triggers for libgdk-pixbuf2.0-0:s390x (2.40.0+dfsg-2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 adwaita-icon-theme_3.34.0-1ubuntu1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 bc_1.07.1-2build1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-s390x-linux-gnu_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1ubuntu1 gfortran-9_9.2.1-21ubuntu1 gir1.2-atk-1.0_2.34.1-1ubuntu1 gir1.2-freedesktop_1.62.0-2 gir1.2-gdkpixbuf-2.0_2.40.0+dfsg-2 gir1.2-glib-2.0_1.62.0-2 gir1.2-gtk-2.0_2.24.32-4ubuntu4 gir1.2-harfbuzz-0.0_2.6.4-1ubuntu1 gir1.2-pango-1.0_1.44.7-1 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 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libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libavahi-client3_0.7-4ubuntu6 libavahi-common-data_0.7-4ubuntu6 libavahi-common3_0.7-4ubuntu6 libbinutils_2.33.1-6ubuntu3 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid-dev_2.34-0.1ubuntu4 libblkid1_2.34-0.1ubuntu4 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcairo-gobject2_1.16.0-4ubuntu1 libcairo-script-interpreter2_1.16.0-4ubuntu1 libcairo2_1.16.0-4ubuntu1 libcairo2-dev_1.16.0-4ubuntu1 libcairomm-1.0-1v5_1.12.2-4 libcairomm-1.0-dev_1.12.2-4 libcamd2_1:5.6.0+dfsg-2 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libccolamd2_1:5.6.0+dfsg-2 libcholmod3_1:5.6.0+dfsg-2 libcolamd2_1:5.6.0+dfsg-2 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libcups2_2.3.0-7 libcurl3-gnutls_7.66.0-1ubuntu1 libcxsparse3_1:5.6.0+dfsg-2 libdatrie-dev_0.2.12-3 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdbus-1-3_1.12.16-2ubuntu2 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdouble-conversion3_3.1.5-3 libdpkg-perl_1.19.7ubuntu2 libdrm-amdgpu1_2.4.100-4 libdrm-common_2.4.100-4 libdrm-dev_2.4.100-4 libdrm-nouveau2_2.4.100-4 libdrm-radeon1_2.4.100-4 libdrm2_2.4.100-4 libedit2_3.1-20191211-1 libegl-mesa0_19.2.4-1ubuntu1 libegl1_1.1.1-0ubuntu1 libeigen3-dev_3.3.7-1 libelf1_0.176-1.1 libevdev2_1.8.0+dfsg-2 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi-dev_3.2.1-9 libffi6_3.2.1-9 libfftw3-bin_3.3.8-2ubuntu1 libfftw3-dev_3.3.8-2ubuntu1 libfftw3-double3_3.3.8-2ubuntu1 libfftw3-long3_3.3.8-2ubuntu1 libfftw3-single3_3.3.8-2ubuntu1 libfile-stripnondeterminism-perl_1.6.3-1 libflac8_1.3.3-1 libfltk-gl1.3_1.3.4-10 libfltk1.3_1.3.4-10 libfontconfig1_2.13.1-2ubuntu2 libfontconfig1-dev_2.13.1-2ubuntu2 libfreetype-dev_2.10.1-2 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libqt4-network_4:4.8.7+dfsg-7ubuntu3 libqt4-opengl_4:4.8.7+dfsg-7ubuntu3 libqt4-opengl-dev_4:4.8.7+dfsg-7ubuntu3 libqt4-qt3support_4:4.8.7+dfsg-7ubuntu3 libqt4-script_4:4.8.7+dfsg-7ubuntu3 libqt4-scripttools_4:4.8.7+dfsg-7ubuntu3 libqt4-sql_4:4.8.7+dfsg-7ubuntu3 libqt4-svg_4:4.8.7+dfsg-7ubuntu3 libqt4-test_4:4.8.7+dfsg-7ubuntu3 libqt4-xml_4:4.8.7+dfsg-7ubuntu3 libqt4-xmlpatterns_4:4.8.7+dfsg-7ubuntu3 libqt5core5a_5.12.5+dfsg-2 libqt5dbus5_5.12.5+dfsg-2 libqt5gui5_5.12.5+dfsg-2 libqt5help5_5.12.5-2 libqt5network5_5.12.5+dfsg-2 libqt5printsupport5_5.12.5+dfsg-2 libqt5sql5_5.12.5+dfsg-2 libqt5widgets5_5.12.5+dfsg-2 libqt5xml5_5.12.5+dfsg-2 libqtcore4_4:4.8.7+dfsg-7ubuntu3 libqtdbus4_4:4.8.7+dfsg-7ubuntu3 libqtgui4_4:4.8.7+dfsg-7ubuntu3 libreadline-dev_8.0-3 libreadline8_8.0-3 libroken18-heimdal_7.7.0+dfsg-1 librsvg2-2_2.46.4-1ubuntu1 librsvg2-common_2.46.4-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsamplerate0_0.1.9-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 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libvorbisenc2_1.3.6-2ubuntu1 libwacom-common_1.1-2build3 libwacom2_1.1-2build3 libwayland-client0_1.17.0-1 libwayland-server0_1.17.0-1 libwebp6_0.6.1-2 libwebpmux3_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-1 libwmf0.2-7_0.2.8.4-15ubuntu1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libx11-dev_2:1.6.8-1 libx11-xcb-dev_2:1.6.8-1 libx11-xcb1_2:1.6.8-1 libxau-dev_1:1.0.9-0ubuntu1 libxau6_1:1.0.9-0ubuntu1 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1build1 libxcb-keysyms1_0.4.0-1build1 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1build1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-shm0-dev_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util1_0.4.0-0ubuntu3 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xinput0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxcomposite-dev_1:0.4.5-0ubuntu1 libxcomposite1_1:0.4.5-0ubuntu1 libxcursor-dev_1:1.2.0-2 libxcursor1_1:1.2.0-2 libxdamage-dev_1:1.1.5-1 libxdamage1_1:1.1.5-1 libxdmcp-dev_1:1.1.3-0ubuntu1 libxdmcp6_1:1.1.3-0ubuntu1 libxext-dev_2:1.3.4-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxft-dev_2.3.3-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxi-dev_2:1.7.10-0ubuntu1 libxi6_2:1.7.10-0ubuntu1 libxinerama-dev_2:1.1.4-2 libxinerama1_2:1.1.4-2 libxkbcommon-x11-0_0.9.1-1 libxkbcommon0_0.9.1-1 libxml-libxml-perl_2.0134+dfsg-1build1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml2_2.9.4+dfsg1-8ubuntu1 libxml2-utils_2.9.4+dfsg1-8ubuntu1 libxmu-dev_2:1.1.3-0ubuntu1 libxmu-headers_2:1.1.3-0ubuntu1 libxmu6_2:1.1.3-0ubuntu1 libxrandr-dev_2:1.5.2-0ubuntu1 libxrandr2_2:1.5.2-0ubuntu1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1build1 libxxf86vm1_1:1.1.4-1build1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 matlab-support-dev_0.0.21.1 mawk_1.3.3-17ubuntu3 mesa-common-dev_19.2.4-1ubuntu1 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 octave_5.1.0-4build1 octave-common_5.1.0-4build1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 pango1.0-tools_1.44.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python_2.7.17-1 python-minimal_2.7.17-1 python2_2.7.17-1 python2-minimal_2.7.17-1 python2.7_2.7.17-1 python2.7-minimal_2.7.17-1 python3_3.7.5-1ubuntu1 python3-distutils_3.8.0-1 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-1ubuntu1 python3.7_3.7.5-2 python3.7-minimal_3.7.5-2 qdbus_4:4.8.7+dfsg-7ubuntu3 qt4-linguist-tools_4:4.8.7+dfsg-7ubuntu3 qt4-qmake_4:4.8.7+dfsg-7ubuntu3 qtchooser_66-2 qtcore4-l10n_4:4.8.7+dfsg-7ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrtrix3-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shared-mime-info_1.10-1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tex-common_6.13 texinfo_6.6.0.dfsg.1-2ubuntu3 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ubuntu-mono_19.04-0ubuntu2 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu4 uuid-dev_2.34-0.1ubuntu4 x11-common_1:7.7+19ubuntu12 x11proto-composite-dev_1:2018.4-4 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-input-dev_2018.4-4 x11proto-randr-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 x11proto-xinerama-dev_2018.4-4 xkb-data_2.26-2ubuntu2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1build1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Nov 2 19:37:52 2019 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3build1.dsc dpkg-source: info: extracting mrtrix3 in mrtrix3-3.0~rc3+git135-g2b8e7d0c2 dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying up_blend_python dpkg-source: info: applying changeset_7fb509cf35d5862f073faaa7e136e987486960d9.diff dpkg-source: info: applying changeset_1c1d3304791bd029bca744ff6634bfa4824f6938.diff dpkg-source: info: applying deb_run_tests dpkg-source: info: applying debian_build_cfg Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18330605 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18330605 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18330605 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build clean find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory make[1]: [debian/rules:69: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Ubuntu 9.2.1-21ubuntu1) 9.2.1 20191130 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: big-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 8 bytes Checking for std::max_align_t: 8 bytes Checking for Eigen3 library: 3.3.7 Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: not found - TIFF support disabled Checking for FFTW library: fftw-3.3.8 Checking for OpenMP support: ok Checking for Qt moc: moc (version 4.8.7) Checking for Qt qmake: qmake (version 4.8.7) Checking for Qt rcc: rcc (version 4.8.7) Checking for Qt: 4.8.7 writing configuration to file './config': ok make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./build -verbose active config is default reading configuration from "config"... getting git version in folder "."... not found getting git version in folder "."... not found version file "./core/version.cpp" is out of date - updating getting git version in folder "."... not found version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/tsfmult bin/tckstats bin/tsfinfo bin/sh2peaks bin/shconv bin/peaks2amp bin/mrregister bin/sh2power bin/5tt2vis bin/mesh2voxel bin/mrconvert bin/voxel2fixel bin/tckgen bin/mrcalc bin/transformcompose bin/amp2sh bin/tcksift bin/mrfilter bin/mrdegibbs bin/dirsplit bin/transformconvert bin/voxel2mesh bin/maskdump bin/fixelreorient bin/tckinfo bin/fixel2sh bin/fixelcorrespondence bin/label2colour bin/mraverageheader bin/labelconvert bin/dcmedit bin/5tt2gmwmi bin/dwidenoise bin/mrthreshold bin/warpinit bin/tckedit bin/dwiextract bin/afdconnectivity bin/tck2fixel bin/mrtransform bin/dcminfo bin/tckdfc bin/shbasis bin/tsfvalidate bin/mrclusterstats bin/connectomestats bin/transformcalc bin/fixel2voxel bin/tckglobal bin/dirgen bin/mrcrop bin/warp2metric bin/tckconvert bin/dirorder bin/dirflip bin/sh2response bin/mrview bin/tsfdivide bin/dwi2adc bin/fod2fixel bin/mrresize bin/maskfilter bin/tcksample bin/5ttedit bin/shview bin/mrcheckerboardmask bin/dwi2tensor bin/warpinvert bin/meshfilter bin/mrstats bin/mtnormalise bin/tck2connectome bin/mrcat bin/fixelcrop bin/mrhistogram bin/tcksift2 bin/tckmap bin/dwi2fod bin/connectome2tck bin/tsfthreshold bin/mrinfo bin/mrhistmatch bin/mrpad bin/5ttcheck bin/fod2dec bin/amp2response bin/sh2amp bin/dwi2mask bin/fixelconvert bin/vectorstats bin/warpconvert bin/dirmerge bin/dwinormalise bin/mredit bin/warpcorrect bin/mrmath bin/tsfsmooth bin/fixelcfestats bin/meshconvert bin/tckresample bin/label2mesh bin/tcktransform bin/mrmetric bin/mrdump bin/tensor2metric bin/fixel2tsf bin/dirstat TODO list contains 505 items launching 4 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o ( 1/505) [CC] tmp/cmd/labelconvert.o ( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 3/505) [CC] tmp/src/dwi/directions/file.o ( 4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp ( 5/505) [CC] tmp/cmd/mrcalc.o ( 6/505) [CC] tmp/core/version.o ( 7/505) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o: In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 8/505) [CC] tmp/cmd/mrdump.o ( 9/505) [CC] tmp/core/file/dicom/tree.o ( 10/505) [CC] tmp/src/registration/transform/rigid.o ( 11/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp ( 12/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o ( 13/505) [CC] tmp/cmd/dirstat.o ( 14/505) [CC] tmp/src/gui/shapes/cylinder.o ( 15/505) [CC] tmp/cmd/mrconvert.o ( 16/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o ( 17/505) [CC] tmp/cmd/dwiextract.o ( 18/505) [CC] tmp/src/dwi/directions/set.o ( 19/505) [CC] tmp/core/file/dicom/dict.o ( 20/505) [CC] tmp/core/app.o ( 21/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o ( 22/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o ( 23/505) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 24/505) [CC] tmp/cmd/warpinvert.o ( 25/505) [CC] tmp/core/formats/xds.o ( 26/505) [CC] tmp/src/surface/algo/mesh2image.o ( 27/505) [CC] tmp/src/connectome/lut.o ( 28/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp ( 29/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o ( 30/505) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/gui.cpp -o tmp/src/gui/gui.o ool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 31/505) [CC] tmp/src/gui/mrview/mode/volume.o ( 32/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp ( 33/505) [CC] tmp/src/gui/mrview/tool/odf/item.o ( 34/505) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecatedg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 35/505) [CC] tmp/cmd/mrcheckerboardmask.o ( 36/505) [CC] tmp/src/gui/mrview/tool/base.o ( 37/505) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/bag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o se.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 38/505) [CC] tmp/core/phase_encoding.o ( 39/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp ( 40/505) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 41/505) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 42/505) [CC] tmp/core/image_io/ram.o ( 43/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o ( 44/505) [CC] tmp/cmd/tckmap.o ( 45/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp ( 46/505) [CC] tmp/src/registration/transform/initialiser.o ( 47/505) [CC] tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/color_button.cpp -o tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o -Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 48/505) [CC] tmp/src/gui/mrview/adjust_button.o ( 49/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o ( 50/505) [CC] tmp/src/gui/color_button.o ( 51/505) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy]g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 52/505) [CC] tmp/src/dwi/tractography/roi.o ( 53/505) [CC] tmp/cmd/dirgen.o ( 54/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o ( 55/505) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::Gg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o L::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 56/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o ( 57/505) [CC] tmp/cmd/mrclusterstats.o ( 58/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp ( 59/505) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 60/505) [CC] tmp/src/surface/filter/vertex_transform.o ( 61/505) [CC] tmp/core/formats/nifti2_gz.o ( 62/505) [CC] tmp/src/stats/tfce.o ( 63/505) [CC] tmp/cmd/mrhistogram.o ( 64/505) [CC] tmp/cmd/mrview.o ( 65/505) [CC] tmp/cmd/sh2amp.o ( 66/505) [CC] tmp/core/file/nifti1_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/mrview/displayable.h:21, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o ithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/gui.h:19, from cmd/mrview.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 67/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o ( 68/505) [CC] tmp/cmd/warpconvert.o ( 69/505) [CC] tmp/core/formats/dicom.o ( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o ( 71/505) [CC] tmp/cmd/maskdump.o ( 72/505) [CC] tmp/cmd/meshfilter.o ( 73/505) [CC] tmp/src/gui/dialog/report_exception.o ( 74/505) [CC] tmp/src/dwi/tractography/editing/editing.o ( 75/505) [CC] tmp/cmd/5ttcheck.o ( 76/505) [RCC] tmp/src/gui/shview/icons.cpp ( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o ( 78/505) [CC] tmp/src/gui/dialog/dialog.o ( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o ( 80/505) [CC] tmp/cmd/mrdegibbs.o ( 81/505) [CC] tmp/src/surface/filter/smooth.o ( 82/505) [CC] tmp/src/dwi/tractography/rng.o ( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o ( 84/505) [CC] tmp/src/gui/mrview/displayable.o ( 85/505) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::matg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o 4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 86/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permstack.cpp -o tmp/src/stats/permstack.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ ( 87/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp ( 88/505) [CC] tmp/src/dwi/tractography/connectome/extract.o ( 89/505) [CC] tmp/src/gui/mrview/colourmap_button.o ( 90/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o ( 91/505) [CC] tmp/src/dwi/directions/predefined.o ( 92/505) [CC] tmp/cmd/mrstats.o ( 93/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o ( 94/505) [CC] tmp/src/dwi/tractography/editing/receiver.o ( 95/505) [CC] tmp/core/image_io/mosaic.o ( 96/505) [CC] tmp/src/dwi/tractography/seeding/basic.o ( 97/505) [CC] tmp/src/gui/opengl/lighting_moc.o ( 98/505) [CC] tmp/cmd/tckinfo.o ( 99/505) [CC] tmp/src/stats/permstack.o (100/505) [CC] tmp/cmd/dirsplit.o (101/505) [CC] tmp/src/gui/mrview/tool/odf/model.o (102/505) [CC] tmp/core/file/dicom/series.o (103/505) [CC] tmp/cmd/tckglobal.o (104/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (105/505) [CC] tmp/core/formats/nifti1.o (106/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (107/505) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GLg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (108/505) [CC] tmp/core/formats/mri.o (109/505) [CC] tmp/cmd/dwi2adc.o (110/505) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/toog++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o l/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (111/505) [CC] tmp/src/dwi/gradient.o (112/505) [CC] tmp/cmd/mrfilter.o (113/505) [CC] tmp/src/dwi/tractography/ACT/act.o (114/505) [CC] tmp/core/file/dicom/element.o (115/505) [CC] tmp/src/dwi/tractography/editing/worker.o (116/505) [CC] tmp/cmd/tsfthreshold.o (117/505) [CC] tmp/src/gui/mrview/combo_box_error.o (118/505) [CC] tmp/cmd/meshconvert.o (119/505) [CC] tmp/src/registration/nonlinear.o (120/505) [CC] tmp/cmd/amp2response.o (121/505) [CC] tmp/core/file/name_parser.o (122/505) [CC] tmp/cmd/tck2connectome.o (123/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (124/505) [CC] tmp/src/dwi/tractography/seeding/list.o (125/505) [CC] tmp/cmd/maskfilter.o (126/505) [CC] tmp/core/stats.o (127/505) [CC] tmp/src/surface/filter/base.o (128/505) [CC] tmp/src/gui/mrview/gui_image.o (129/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o (130/505) [CC] tmp/src/gui/mrview/window.o (131/505) [CC] tmp/cmd/mrresize.o (132/505) [CC] tmp/cmd/tsfvalidate.o (133/505) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(consg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o t MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (134/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operatg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o or=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (135/505) [CC] tmp/src/gui/cursor.o (136/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vecg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o tor<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/window.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (137/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o (138/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:50:26: warng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o ing: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (139/505) [CC] tmp/src/gui/mrview/mode/slice.o (140/505) [CC] tmp/core/file/dicom/patient.o (141/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrviewg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o /mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (142/505) [CC] tmp/core/formats/mrtrix.o (143/505) [CC] tmp/cmd/tckdfc.o (144/505) [CC] tmp/cmd/5tt2gmwmi.o (145/505) [CC] tmp/cmd/warpinit.o (146/505) [CC] tmp/src/gui/dialog/image_properties.o (147/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (148/505) [CC] tmp/cmd/tckresample.o (149/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (150/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (151/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (152/505) [CC] tmp/core/file/dicom/select_cmdline.o (153/505) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o tion.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (154/505) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI:g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o :GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (155/505) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); }g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (156/505) [CC] tmp/src/connectome/enhance.o (157/505) [CC] tmp/src/surface/scalar.o (158/505) [CC] tmp/src/gui/dialog/progress.o (159/505) [CC] tmp/core/file/nifti2_utils.o (160/505) [CC] tmp/core/signal_handler.o (161/505) [CC] tmp/cmd/mrhistmatch.o (162/505) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o: In file included from /usr/include/string.h:494, from /usr/include/c++/9/cstring:42, from ./core/app.h:19, from ./core/header.h:22, from core/file/nifti2_utils.cpp:16: In function char* strncpy(char*, const char*, size_t), inlined from void MR::File::NIfTI2::write(nifti_2_header&, const MR::Header&, bool) at core/file/nifti2_utils.cpp:267:17: /usr/include/s390x-linux-gnu/bits/string_fortified.h:106:34: warning: char* __builtin_strncpy(char*, const char*, long unsigned int) output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (163/505) [CC] tmp/cmd/5tt2vis.o (164/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (165/505) [CC] tmp/cmd/fixelconvert.o (166/505) [CC] tmp/cmd/mrcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/bitset.cpp -o tmp/core/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (167/505) [CC] tmp/core/bitset.o (168/505) [CC] tmp/cmd/connectomestats.o (169/505) [CC] tmp/cmd/tsfdivide.o (170/505) [CC] tmp/src/gui/mrview/tool/overlay.o (171/505) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (172/505) [CC] tmp/src/dwi/directions/mask.o (173/505) [CC] tmp/src/gui/shview/icons.o (174/505) [CC] tmp/src/stats/permtest.o (175/505) [CC] tmp/cmd/dirflip.o (176/505) [CC] tmp/cmd/mrregister.o (177/505) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, frg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o om src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (178/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (179/505) [CC] tmp/src/dwi/tractography/GT/gt.o (180/505) [CC] tmp/src/dwi/tractography/SIFT2/lg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o ine_search.o (181/505) [CC] tmp/src/registration/transform/initialiser_helpers.o (182/505) [CC] tmp/cmd/tcktransform.o (183/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/openglg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o /transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (184/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (185/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (186/505) [CC] tmp/src/dwi/tractography/mapping/writer.o (187/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (188/505) [CC] tmp/cmd/mtnormalise.o (189/505) [CC] tmp/core/file/config.o (190/505) [CC] tmp/src/dwi/tractography/GT/particle.o (191/505) [CC] tmp/src/dwi/tractography/weights.o (192/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:5g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o 0:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (193/505) [CC] tmp/core/formats/list.o (194/505) [CC] tmp/src/dwi/tractography/file_base.o (195/505) [CC] tmp/cmd/sh2power.o (196/505) [CC] tmp/core/exception.o (197/505) [CC] tmp/core/formats/mgz.o (198/505) [CC] tmp/src/registration/transform/convergence_check.o (199/505) [CC] tmp/cmd/tckstats.o (200/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (201/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (202/505) [CC] tmp/src/dwi/tractography/tracking/shared.o (203/505) [CC] tmp/cmd/mrmetric.o (204/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (205/505) [CC] tmp/core/image_io/pipe.o (206/505) [CC] tmp/core/image_io/tiff.o (207/505) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (208/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (209/505) [CC] tmp/core/math/stats/glm.o (210/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (211/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o (212/505) [CC] tmp/cmd/shconv.o (213/505) [CC] tmp/src/gui/dwi/renderer.o (214/505) [CC] tmp/src/gui/opengl/shader.o (215/505) [CC] tmp/src/gui/opengl/lighting.o (216/505) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o: In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has usermoc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o -provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (217/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (218/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (219/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o (220/505) [CC] tmp/core/file/json_utils.o (221/505) [CC] tmp/core/file/mmap.o (222/505) [CC] tmp/cmd/tckconvert.o (223/505) [CC] tmp/src/registration/linear.o (224/505) [CC] tmp/cmd/transformcalc.o (225/505) [CC] tmp/cmd/fixelcrop.o (226/505) [CC] tmp/core/image_io/default.o (227/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (228/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (229/505) [CC] tmp/src/gui/opengl/gl.o (230/505) [RCC] tmp/src/gui/mrview/icons.cpp (231/505) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (232/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (233/505) [CC] tmp/cmd/dcminfo.o (234/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (235/505) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o ool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (236/505) [CC] tmp/src/gui/shapes/cube.o (237/505) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: In file included from /usr/include/string.h:494, from /usr/include/c++/9/cstring:42, from ./core/app.h:19, from ./core/header.h:22, from src/surface/mesh.h:23, from src/surface/mesh.cpp:16: In function char* strncpy(char*, const char*, size_t), inlined from void MR::Surface::Mesh::save_stl(const string&, bool) const at src/surface/mesh.cpp:660:17: /usr/include/s390x-linux-gnu/bits/string_fortified.h:106:34: warning: char* __builtin_strncpy(char*, const char*, long unsigned int) specified bound 80 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (238/505) [CC] tmp/src/gui/dialog/dicom.o (239/505) [CC] tmp/core/file/ofstream.o (240/505) [CC] tmp/src/exec_version.o (241/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (242/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (243/505) [CC] tmp/src/gui/dialog/list.o (244/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from srcmoc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o /gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (245/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (246/505) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o: In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (247/505) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/shells.cpp -o tmp/src/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o ui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (248/505) [CC] tmp/core/image_io/scratch.o (249/505) [CC] tmp/src/dwi/shells.o (250/505) [CC] tmp/cmd/dcmedit.o (251/505) [CC] tmp/core/file/dicom/mapper.o (252/505) [CC] tmp/core/formats/mgh.o (253/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (254/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (255/505) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueTg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/datatype.cpp -o tmp/core/datatype.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/header.cpp -o tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o ype = false] /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:19, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (256/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (257/505) [CC] tmp/core/axes.o (258/505) [CC] tmp/core/file/tiff.o (259/505) [CC] tmp/core/datatype.o (260/505) [CC] tmp/core/header.o (261/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (262/505) [CC] tmp/src/gui/shapes/halfsphere.o (263/505) [CC] tmp/cmd/label2colour.o (264/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (265/505) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o: In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (266/505) [CC] tmp/cmd/mrtransform.o (267/505) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o lightbox_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (268/505) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (269/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (270/505) [CC] tmp/core/math/stats/permutation.o (271/505) [CC] tmp/cmd/fixel2tsf.o (272/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (273/505) [CC] tmp/core/image_io/fetch_store.o (274/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (275/505) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (276/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (277/505) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (278/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (279/505) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (280/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In fg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/analyse.cpp -o tmp/core/formats/analyse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o ile included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (281/505) [CC] tmp/src/gui/dwi/render_frame.o (282/505) [CC] tmp/core/formats/analyse.o (283/505) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ src/gui/dwi/render_frame.cpp: In member function virtual void MR::GUI::DWI::RenderFrame::paintGL(): src/gui/dwi/render_frame.cpp:173:143: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 173 | P = GL::frustum (-horizontal+OS_x*incx, -horizontal+ (1+OS_x) *incx, -vertical+OS_y*incy, -vertical+ (1+OS_y) *incy, near_, dist+3.0); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ src/gui/dwi/render_frame.cpp:176:89: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 176 | P = GL::frustum (-horizontal, horizontal, -vertical, vertical, near_, dist+3.0); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (284/505) [CC] tmp/cmd/transformcompose.o (285/505) [CC] tmp/cmd/voxel2fixel.o (286/505) [CC] tmp/cmd/fixelcorrespondence.o (287/505) [CC] tmp/core/formats/tiff.o (288/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o (289/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provideg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o d MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (290/505) [CC] tmp/src/gui/mrview/icons.o (291/505) [CC] tmp/cmd/fixel2voxel.o (292/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/key_value.cpp -o tmp/core/file/key_value.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (293/505) [CC] tmp/cmd/tckedit.o (294/505) [CC] tmp/core/image_io/sparse.o (295/505) [CC] tmp/core/file/key_value.o (296/505) [CC] tmp/src/dwi/tractography/seeding/seeding.o (297/505) [CC] tmp/cmd/tck2fixel.o (298/505) [CC] tmp/cmd/tcksift2.o (299/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o (300/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (301/505) [CC] tmp/core/stride.o (302/505) [g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap.cpp -o tmp/src/gui/mrview/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mgh.cpp -o tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o CC] tmp/core/formats/nifti1_gz.o (303/505) [CC] tmp/src/gui/mrview/colourmap.o (304/505) [CC] tmp/core/file/mgh.o (305/505) [CC] tmp/src/gui/lighting_dock.o (306/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap.cpp -o tmp/src/gui/mrview/colourmap.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (307/505) [CC] tmp/cmd/dwi2fod.o (308/505) [CC] tmp/cmd/tsfinfo.o (309/505) [CC] tmp/src/dwi/tractography/resampling/arc.o (310/505) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (311/505) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o moc src/gui/gui.h -o tmp/src/gui/gui_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/gui_moc.cpp -o tmp/src/gui/gui_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (312/505) [CC] tmp/core/formats/ram.o (313/505) [CC] tmp/core/thread.o (314/505) [CC] tmp/core/file/nifti_utils.o (315/505) [CC] tmp/src/gui/dialog/file.o (316/505) [CC] tmp/cmd/mrcat.o (317/505) [CC] tmp/cmd/voxel2mesh.o (318/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (319/505) [MOC] tmp/src/gui/gui_moc.cpp (320/505) [CC] tmp/src/gui/gui_moc.o (321/505) [CC] tmp/cmd/warp2metric.o (322/505) [CC] tmp/core/formats/pipe.o (323/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from srg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o c/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (324/505) [CC] tmp/cmd/sh2peaks.o (325/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (326/505) [CC] tmp/cmd/afdconnectivity.o (327/505) [CC] tmp/core/formats/mrtrix_utils.o (328/505) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrpad.cpp -o tmp/cmd/mrpad.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (329/505) [CC] tmp/cmd/mrpad.o (330/505) [CC] tmp/cmd/fod2dec.o (331/505) [CC] tmp/src/stats/cfe.o (332/505) [CC] tmp/cmd/mrinfo.o (333/505) [CC] tmp/src/gui/mrview/mode/ortho.o (334/505) [CC] tmp/cmd/tensor2metric.o (335/505) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h: In instantiation of void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false] /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from _ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection] /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from _ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:1593:33: required from void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection] /usr/include/c++/9/bits/stl_vector.h:522:9: required from std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::veg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o ctor<_Tp, _Alloc>::allocator_type = std::allocator] ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&) is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/shader.h:140:22: note: because MR::GUI::GL::Shader::Program has user-provided MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&) 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/mode/ortho.h:19, from src/gui/mrview/mode/ortho.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method MR::GUI::Projection::Projection(const MR::GUI::Projection&) first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (336/505) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (337/505) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (338/505) [CC] tmp/core/file/dicom/study.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o ector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o: src/dwi/tractography/GT/internalenergy.cpp: In member function MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour(): src/dwi/tractography/GT/internalenergy.cpp:103:18: warning: pe may be used uninitialized in this function [-Wmaybe-uninitialized] 103 | return pe; | ^~ (339/505) [CC] tmp/cmd/fixelreorient.o (340/505) [MOC] tmp/src/gui/color_button_moc.cpp (341/505) [CC] tmp/cmd/mraverageheader.o (342/505) [CC] tmp/src/dwi/tractography/connectome/connectome.o (343/505) [CC] tmp/cmd/fixel2sh.o (344/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp (345/505) [CC] tmp/src/gui/lighting_dock_moc.o (346/505) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (347/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwinormalise.cpp -o tmp/cmd/dwinormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (348/505) [CC] tmp/core/formats/nifti2.o (349/505) [CC] tmp/src/gui/opengl/font.o (350/505) [CC] tmp/cmd/dwinormalise.o (351/505) [CC] tmp/src/surface/polygon.o (352/505) [CC] tmp/cmd/shbasis.o (353/505) [CC] tmp/cmd/dwi2mask.o (354/505) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (355/505) [CC] tmp/core/math/bessel.o (356/505) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (357/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: bg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o ecause MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (358/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (359/505) [CC] tmp/src/dwi/sdeconv/csd.o (360/505) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GLg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o ::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (361/505) [CC] tmp/src/connectome/connectome.o (362/505) [CC] tmp/src/gui/dialog/opengl.o (363/505) [CC] tmp/core/formats/mrtrix_gz.o (364/505) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (365/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o (366/505) [CC] tmp/cmd/dwi2tensor.o (367/505) [CC] tmp/cmd/fixelcfestats.o (368/505) [CC] tmp/core/file/dicom/image.o (369/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (370/505) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (371/505) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o ode/lightbox.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (372/505) [CC] tmp/cmd/dwidenoise.o (373/505) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, fromg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (374/505) [CC] tmp/cmd/dirorder.o (375/505) [CC] tmp/src/gui/mrview/mode/base.o (376/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o (377/505) [CC] tmp/core/image_io/base.o (378/505) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (379/505) [CC] tmp/cmd/amp2sh.o (380/505) [CC] tmp/cmd/mredit.o (381/505) [CC] tmp/src/stats/cluster.o (382/505) [CC] tmp/src/gui/mrview/tool/view_moc.o (383/505) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (384/505) [CC] tmp/src/gui/mrview/adjust_button_moc.o (385/505) [CC] tmp/cmd/vectorstats.o (386/505) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (387/505) [CC] tmp/src/gui/mrview/spin_box_moc.o (388/505) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o g++ tmp/core/exception.o tmp/core/formats/mgz.o tmp/core/file/json_utils.o tmp/core/stride.o tmp/core/file/mmap.o tmp/core/formats/pipe.o tmp/core/formats/nifti1.o tmp/core/image_io/scratch.o tmp/core/math/stats/permutation.o tmp/core/formats/mri.o tmp/core/file/dicom/select_cmdline.o tmp/core/image_io/fetch_store.o tmp/core/file/dicom/mapper.o tmp/core/formats/nifti1_gz.o tmp/core/formats/mgh.o tmp/core/formats/nifti2.o tmp/core/math/average_space.o tmp/core/version.o tmp/core/math/stats/glm.o tmp/core/file/mgh.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/analyse.o tmp/core/algo/histogram.o tmp/core/formats/mrtrix_gz.o tmp/core/file/dicom/tree.o tmp/core/file/nifti2_utils.o tmp/core/formats/nifti2_gz.o tmp/core/axes.o tmp/core/signal_handler.o tmp/core/formats/ram.o tmp/core/math/bessel.o tmp/core/file/tiff.o tmp/core/file/nifti1_utils.o tmp/core/datatype.o tmp/core/header.o tmp/core/formats/mrtrix.o tmp/core/image_io/mosaic.o tmp/core/adapter/reslice.o tmp/core/formats/list.o tmp/core/image_io/sparse.o tmp/core/phase_encoding.o tmp/core/mrtrix.o tmp/core/file/name_parser.o tmp/core/file/dicom/dict.o tmp/core/file/dicom/study.o tmp/core/file/key_value.o tmp/core/image_io/base.o tmp/core/app.o tmp/core/file/config.o tmp/core/thread.o tmp/core/image_io/pipe.o tmp/core/formats/dicom.o tmp/core/file/nifti_utils.o tmp/core/progressbar.o tmp/core/image_io/tiff.o tmp/core/image_io/gz.o tmp/core/bitset.o tmp/core/stats.o tmp/core/file/dicom/patient.o tmp/core/math/SH.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/xds.o tmp/core/image_io/default.o tmp/core/file/ofstream.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/dicom/series.o tmp/core/file/dicom/image.o tmp/core/image_io/ram.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -o lib/libmrtrix.so , from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (389/505) [CC] tmp/cmd/peaks2amp.o (390/505) [CC] tmp/core/image_io/gz.o (391/505) [CC] tmp/core/progressbar.o (392/505) [MOC] tmp/src/gui/mrview/window_moc.cpp (393/505) [CC] tmp/src/gui/mrview/window_moc.o (394/505) [CC] tmp/core/file/dicom/quick_scan.o (395/505) [LD] lib/libmrtrix.so g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/guig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose g++ tmp/src/dwi/directions/file.o tmp/cmd/dirorder.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp g++ tmp/src/connectome/lut.o tmp/cmd/meshconvert.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats _image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (396/505) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (397/505) [LB] bin/transformcompose (398/505) [LB] bin/dirorder (399/505) [LB] bin/dirgen (400/505) [LB] bin/peaks2amp (401/505) [LB] bin/meshconvert (402/505) [LB] bin/mrpad (403/505) [LB] bin/tck2fixel (404/505) [LB] bin/warpcorrect (405/505) [LB] bin/afdconnectivity (406/505) [LB] bin/mrstats (407/505) [LB] bing++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold g++ tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ tmp/cmd/mrcat.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert g++ tmp/cmd/mrcalc.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/smooth.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/meshfilter.o tmp/src/surface/mesh_multi.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/endpoints.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf g++ tmp/src/dwi/directions/file.o tmp/cmd/dirmerge.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge g++ tmp/src/stats/permtest.o tmp/cmd/vectorstats.o tmp/src/stats/permstack.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit g++ tmp/src/exec_version.o tmp/cmd/voxel2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2fixel.o tmp/src/exec_version.o tmp/src/dwi/directions/mask.o tmp/src/dwi/directions/set.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel g++ tmp/src/dwi/gradient.o tmp/cmd/mrconvert.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc /warpconvert (408/505) [LB] bin/sh2power (409/505) [LB] bin/mrhistmatch (410/505) [LB] bin/mrthreshold (411/505) [LB] bin/fod2dec (412/505) [LB] bin/mrdump (413/505) [LB] bin/shbasis (414/505) [LB] bin/warp2metric (415/505) [LB] bin/fixel2sh (416/505) [LB] bin/tsfthreshold (417/505) [LB] bin/labelconvert (418/505) [LB] bin/mrmath (419/505) [LB] bin/dwi2adc (420/505) [LB] bin/mrcat (421/505) [LB] bin/tckconvert (422/505) [LB] bin/fixel2voxel (423/505) [LB] bin/transformcalc (424/505) [LB] bin/maskfilter (425/505) [LB] bin/warpinvert (426/505) [LB] bin/mrcalc (427/505) [LB] bin/meshfilter (428/505) [LB] bin/5tt2vis (429/505) [LB] bin/mrfilter (430/505) [LB] bin/tckresample (431/505) [LB] bin/maskdump (432/505) [LB] bin/fixel2tsf (433/505) [LB] bin/dirmerge (434/505) [LB] bin/vectorstats (435/505) [LB] bin/warpinit (436/505) [LB] bin/voxel2fixel (437/505) [LB] bin/mredit (438/505) [LB] bin/tsfsmooth (439/505) [LB] bin/fod2fixel (440/505) [LB] bin/mrconvert (441/505) [LB] bin/tckdfc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h: In member function MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&): src/gui/opengl/transformation.h:127:31: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h: In member function void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&): src/gui/projection.h:45:16: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared MR::GUI::GL::mat4&g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirflip.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats g++ tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/stats/cfe.o tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixelcfestats.o tmp/src/stats/permstack.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/cmd/label2mesh.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh g++ tmp/src/exec_version.o tmp/cmd/dcmedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/cmd/tsfvalidate.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/cmd/mesh2voxel.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/surface/algo/mesh2image.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert g++ tmp/cmd/label2colour.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwiextract.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tcksift.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/connectome/matrix.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit g++ tmp/src/dwi/gradient.o tmp/cmd/sh2response.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckglobal.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult g++ tmp/cmd/dwinormalise.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwinormalise g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck g++ tmp/cmd/mrresize.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrresize g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat g++ tmp/cmd/mrcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcrop g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo g++ tmp/cmd/dwi2tensor.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tcksift2.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/SIFT/track_index_range.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 g++ tmp/src/dwi/directions/predefined.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2fod.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap g++ tmp/cmd/amp2sh.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/cmd/connectomestats.o tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/permstack.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfdivide.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide g++ tmp/cmd/tensor2metric.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck g++ tmp/src/registration/linear.o tmp/src/exec_version.o tmp/src/registration/transform/affine.o tmp/src/registration/transform/initialiser.o tmp/src/registration/nonlinear.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrregister.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks g++ tmp/cmd/sh2amp.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksample.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/editing/receiver.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrclusterstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -DMRTRIX_WORD64 -DMRTRIX_BYTE_ORDER_IS_BIG_ENDIAN -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -m64 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++-64 -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -m64 -Wl,-O1 -L/usr/lib/s390x-linux-gnu -L/usr/X11R6/lib64 -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview g++ tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dialog/list.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/shview/render_window.o tmp/src/gui/shview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/lighting.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/color_button.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/gui_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/progress.o tmp/src/gui/projection.o tmp/cmd/shview.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/opengl/font.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dialog/file.o tmp/src/gui/color_button_moc.o tmp/src/gui/shview/render_window_moc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -m64 -Wl,-O1 -L/usr/lib/s390x-linux-gnu -L/usr/X11R6/lib64 -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/shview MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&) is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because MR::GUI::GL::mat4 has user-provided MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&) 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (442/505) [LB] bin/dirflip (443/505) [LB] bin/tckstats (444/505) [LB] bin/mrtransform (445/505) [LB] bin/fixelcfestats (446/505) [LB] bin/mraverageheader (447/505) [LB] bin/fixelcorrespondence (448/505) [LB] bin/5ttedit (449/505) [LB] bin/label2mesh (450/505) [LB] bin/dcmedit (451/505) [LB] bin/tckgen (452/505) [LB] bin/mrdegibbs (453/505) [LB] bin/tsfvalidate (454/505) [LB] bin/amp2response (455/505) [LB] bin/mesh2voxel (456/505) [LB] bin/voxel2mesh (457/505) [LB] bin/tckinfo (458/505) [LB] bin/fixelconvert (459/505) [LB] bin/label2colour (460/505) [LB] bin/mtnormalise (461/505) [LB] bin/dwiextract (462/505) [LB] bin/tcksift (463/505) [LB] bin/tck2connectome (464/505) [LB] bin/dirsplit (465/505) [LB] bin/sh2response (466/505) [LB] bin/tckglobal (467/505) [LB] bin/fixelcrop (468/505) [LB] bin/transformconvert (469/505) [LB] bin/mrhistogram (470/505) [LB] bin/tsfmult (471/505) [LB] bin/dwinormalise (472/505) [LB] bin/5ttcheck (473/505) [LB] bin/mrresize (474/505) [LB] bin/dirstat (475/505) [LB] bin/mrcrop (476/505) [LB] bin/mrinfo (477/505) [LB] bin/dwi2tensor (478/505) [LB] bin/dwidenoise (479/505) [LB] bin/tcksift2 (480/505) [LB] bin/dwi2fod (481/505) [LB] bin/tckmap (482/505) [LB] bin/amp2sh (483/505) [LB] bin/tsfinfo (484/505) [LB] bin/mrcheckerboardmask (485/505) [LB] bin/connectomestats (486/505) [LB] bin/tsfdivide (487/505) [LB] bin/tensor2metric (488/505) [LB] bin/connectome2tck (489/505) [LB] bin/mrregister (490/505) [LB] bin/5tt2gmwmi (491/505) [LB] bin/shconv (492/505) [LB] bin/sh2peaks (493/505) [LB] bin/sh2amp (494/505) [LB] bin/dwi2mask (495/505) [LB] bin/dcminfo (496/505) [LB] bin/tcktransform (497/505) [LB] bin/tcksample (498/505) [LB] bin/tckedit (499/505) [LB] bin/mrmetric (500/505) [LB] bin/mrclusterstats (501/505) [CC] tmp/src/gui/opengl/gl_core_3_3.o (502/505) [CC] tmp/src/gui/color_button_moc.o (503/505) [LB] bin/fixelreorient (504/505) [LB] bin/mrview (505/505) [LB] bin/shview make[1]: Leaving directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' ./run_tests || { cat testing.log; exit 1; } logging to "testing.log" OK building testing commands... OK running "5tt2gmwmi"... 1 of 1 passed running "5tt2vis"... 1 of 1 passed running "5ttedit"... 0 of 1 passed <-------- ERROR running "amp2sh"... 0 of 1 passed <-------- ERROR running "dirgen"... 4 of 4 passed running "dwi2adc"... 0 of 1 passed <-------- ERROR running "dwi2fod"... 0 of 5 passed <-------- ERROR running "dwi2mask"... 0 of 1 passed <-------- ERROR running "dwi2tensor"... 0 of 8 passed <-------- ERROR running "dwidenoise"... 0 of 6 passed <-------- ERROR running "dwiextract"... 0 of 2 passed <-------- ERROR running "fixel2sh"... 0 of 2 passed <-------- ERROR running "fixel2tsf"... make[1]: *** wait: No child processes. Stop. make[1]: *** Waiting for unfinished jobs.... make[1]: *** wait: No child processes. Stop. make: *** [debian/rules:33: build-arch] Terminated E: Caught signal ‘Terminated’: terminating immediately Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 20200105-1411 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 7882968 Build-Time: 10043 Distribution: focal Fail-Stage: build Host Architecture: s390x Install-Time: 41 Job: mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3build1.dsc Machine Architecture: s390x Package: mrtrix3 Package-Time: 10085 Source-Version: 3.0~rc3+git135-g2b8e7d0c2-3build1 Space: 7882968 Status: attempted Version: 3.0~rc3+git135-g2b8e7d0c2-3build1 -------------------------------------------------------------------------------- Finished at 20200105-1411 Build needed 02:48:05, 7882968k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18330605 Scanning for processes to kill in build PACKAGEBUILD-18330605