https://launchpad.net/ubuntu/+archive/test-rebuild-20191220-focal/+build/18342688 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-002 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:08 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Jan 10:47:51 ntpdate[1870]: adjust time server 10.211.37.1 offset 0.003531 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18342688 --image-type chroot /home/buildd/filecache-default/dc614fa4772464ee6d43f8f857199c7f024663c7 Creating target for build PACKAGEBUILD-18342688 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18342688 Starting target for build PACKAGEBUILD-18342688 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18342688 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-18342688 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18342688 Updating target for build PACKAGEBUILD-18342688 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el Packages [934 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:4 http://ftpmaster.internal/ubuntu focal/restricted ppc64el Packages [1288 B] Get:5 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [5768 B] Get:6 http://ftpmaster.internal/ubuntu focal/universe ppc64el Packages [8446 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5195 kB] Get:8 http://ftpmaster.internal/ubuntu focal/multiverse ppc64el Packages [127 kB] Get:9 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [110 kB] Fetched 15.6 MB in 3s (4743 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 94 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 71.4 MB of archives. After this operation, 53.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main ppc64el libc6-dev ppc64el 2.30-0ubuntu3 [2556 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el libc-dev-bin ppc64el 2.30-0ubuntu3 [72.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el linux-libc-dev ppc64el 5.3.0-24.26 [1091 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el libisl22 ppc64el 0.22-2 [691 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el libcc1-0 ppc64el 9.2.1-21ubuntu1 [52.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.33.1-6ubuntu3 [1789 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el libbinutils ppc64el 2.33.1-6ubuntu3 [510 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-common ppc64el 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils ppc64el 2.33.1-6ubuntu3 [3404 B] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9-base ppc64el 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc1 ppc64el 1:9.2.1-21ubuntu1 [29.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el libgomp1 ppc64el 9.2.1-21ubuntu1 [92.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el libitm1 ppc64el 9.2.1-21ubuntu1 [29.5 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el libatomic1 ppc64el 9.2.1-21ubuntu1 [9940 B] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el libasan5 ppc64el 9.2.1-21ubuntu1 [408 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el liblsan0 ppc64el 9.2.1-21ubuntu1 [148 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el libtsan0 ppc64el 9.2.1-21ubuntu1 [305 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el libubsan1 ppc64el 9.2.1-21ubuntu1 [140 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el libquadmath0 ppc64el 9.2.1-21ubuntu1 [149 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main ppc64el g++-9 ppc64el 9.2.1-21ubuntu1 [11.2 MB] Get:21 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++-9-dev ppc64el 9.2.1-21ubuntu1 [1746 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc-9-dev ppc64el 9.2.1-21ubuntu1 [1264 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9 ppc64el 9.2.1-21ubuntu1 [10.4 MB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el cpp-9 ppc64el 9.2.1-21ubuntu1 [9806 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++6 ppc64el 9.2.1-21ubuntu1 [543 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libc6 ppc64el 2.30-0ubuntu3 [2700 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el base-files ppc64el 11ubuntu2 [60.3 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el debianutils ppc64el 4.9.1 [86.6 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el bash ppc64el 5.0-5ubuntu1 [716 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdutils ppc64el 1:2.34-0.1ubuntu4 [67.9 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el gzip ppc64el 1.10-0ubuntu4 [104 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el hostname ppc64el 3.23 [11.8 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-bin ppc64el 6.1+20191019-1ubuntu1 [179 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el libperl5.30 ppc64el 5.30.0-9 [3914 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el perl ppc64el 5.30.0-9 [224 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-base ppc64el 5.30.0-9 [1494 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el bzip2 ppc64el 1.0.8-2 [36.9 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el libbz2-1.0 ppc64el 1.0.8-2 [43.3 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el libblkid1 ppc64el 2.34-0.1ubuntu4 [158 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el libuuid1 ppc64el 2.34-0.1ubuntu4 [21.8 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libfdisk1 ppc64el 2.34-0.1ubuntu4 [193 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-8-0 ppc64el 10.34-7 [203 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el libselinux1 ppc64el 3.0-1 [81.1 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el libmount1 ppc64el 2.34-0.1ubuntu4 [170 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses6 ppc64el 6.1+20191019-1ubuntu1 [120 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el libtinfo6 ppc64el 6.1+20191019-1ubuntu1 [101 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el libncursesw6 ppc64el 6.1+20191019-1ubuntu1 [152 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el libsmartcols1 ppc64el 2.34-0.1ubuntu4 [113 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el fdisk ppc64el 2.34-0.1ubuntu4 [128 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el util-linux ppc64el 2.34-0.1ubuntu4 [1066 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebconfclient0 ppc64el 0.250ubuntu2 [6260 B] Get:53 http://ftpmaster.internal/ubuntu focal/main ppc64el base-passwd ppc64el 3.5.47 [50.2 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main ppc64el libc-bin ppc64el 2.30-0ubuntu3 [626 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el sysvinit-utils ppc64el 2.96-1ubuntu1 [23.0 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el liblz4-1 ppc64el 1.9.2-2 [62.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd-sysv ppc64el 244-3ubuntu1 [9368 B] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el libacl1 ppc64el 2.2.53-5ubuntu1 [20.3 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el libapparmor1 ppc64el 2.13.3-7ubuntu1 [38.0 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap-ng0 ppc64el 0.7.9-2.1 [11.7 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit1 ppc64el 1:2.8.5-2ubuntu5 [42.7 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap2 ppc64el 1:2.27-1 [15.2 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main ppc64el libudev1 ppc64el 244-3ubuntu1 [88.9 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.155-2ubuntu7 [153 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-6 [33.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main ppc64el libcryptsetup12 ppc64el 2:2.2.2-1ubuntu1 [213 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main ppc64el libnettle7 ppc64el 3.5.1+really3.5.1-2 [145 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main ppc64el libhogweed5 ppc64el 3.5.1+really3.5.1-2 [140 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main ppc64el libp11-kit0 ppc64el 0.23.18.1-2 [199 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main ppc64el libtasn1-6 ppc64el 4.15.0-2 [44.7 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main ppc64el libgnutls30 ppc64el 3.6.11.1-2 [774 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main ppc64el libkmod2 ppc64el 26-3ubuntu1 [50.1 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu4 [60.8 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main ppc64el libseccomp2 ppc64el 2.4.2-2ubuntu1 [50.0 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main ppc64el mount ppc64el 2.34-0.1ubuntu4 [122 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd ppc64el 244-3ubuntu1 [4405 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main ppc64el libsystemd0 ppc64el 244-3ubuntu1 [300 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main ppc64el libzstd1 ppc64el 1.4.4+dfsg-1 [298 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main ppc64el libapt-pkg5.90 ppc64el 1.9.5 [916 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcrypt20 ppc64el 1.8.5-3ubuntu1 [439 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main ppc64el gpgv ppc64el 2.2.17-3ubuntu1 [232 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main ppc64el apt ppc64el 1.9.5 [1310 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu4 [42.5 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu4 [282 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main ppc64el libattr1 ppc64el 1:2.4.48-5 [13.6 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main ppc64el libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main ppc64el libsepol1 ppc64el 3.0-1 [284 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage-common all 3.0-1 [9880 B] Get:92 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage1 ppc64el 3.0-1 [95.5 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main ppc64el sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main ppc64el libsqlite3-0 ppc64el 3.30.1-1ubuntu1 [568 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main ppc64el gpg ppc64el 2.2.17-3ubuntu1 [532 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main ppc64el gpgconf ppc64el 2.2.17-3ubuntu1 [144 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main ppc64el gpg-agent ppc64el 2.2.17-3ubuntu1 [267 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile-bin ppc64el 1.16-1.1 [12.1 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile1 ppc64el 1.16-1.1 [7236 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.4 MB in 1s (61.8 MB/s) (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.30-0ubuntu3_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.30-0ubuntu3_ppc64el.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../2-linux-libc-dev_5.3.0-24.26_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.3.0-24.26) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:ppc64el. Preparing to unpack .../3-libisl22_0.22-2_ppc64el.deb ... Unpacking libisl22:ppc64el (0.22-2) ... Preparing to unpack .../4-libcc1-0_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../5-binutils-powerpc64le-linux-gnu_2.33.1-6ubuntu3_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.33.1-6ubuntu3) over (2.33-2ubuntu1) ... Preparing to unpack .../6-libbinutils_2.33.1-6ubuntu3_ppc64el.deb ... 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Unpacking libquadmath0:ppc64el (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../08-g++-9_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking g++-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../09-libstdc++-9-dev_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking libstdc++-9-dev:ppc64el (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../10-libgcc-9-dev_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking libgcc-9-dev:ppc64el (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../11-gcc-9_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking gcc-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../12-cpp-9_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking cpp-9 (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../13-libstdc++6_9.2.1-21ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (9.2.1-21ubuntu1) over (9.2.1-9ubuntu2) ... Setting up libstdc++6:ppc64el (9.2.1-21ubuntu1) ... 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Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18342688 ppc64el focal -c chroot:build-PACKAGEBUILD-18342688 --arch=ppc64el --dist=focal --nolog python-biom-format_2.1.7+dfsg-3ubuntu2.dsc Initiating build PACKAGEBUILD-18342688 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:45:08 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-002.buildd +==============================================================================+ | python-biom-format 2.1.7+dfsg-3ubuntu2 (ppc64el) 05 Jan 2020 10:48 | +==============================================================================+ Package: python-biom-format Version: 2.1.7+dfsg-3ubuntu2 Source Version: 2.1.7+dfsg-3ubuntu2 Distribution: focal Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/python-biom-format-Xs87M9/python-biom-format-2.1.7+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biom-format-Xs87M9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18342688/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biom-format_2.1.7+dfsg-3ubuntu2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-5xbhTx/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-5xbhTx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-5xbhTx/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-5xbhTx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-5xbhTx/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-5xbhTx/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (218 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-5xbhTx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14596 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, cython, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<>/resolver-t5jpTw/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'. Ign:1 copy:/<>/resolver-t5jpTw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-t5jpTw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-t5jpTw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-t5jpTw/apt_archive ./ Sources [298 B] Get:5 copy:/<>/resolver-t5jpTw/apt_archive ./ Packages [621 B] Fetched 3038 B in 0s (251 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-biom-format build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-openmpi-103 libhwloc-plugins libhwloc15 libibverbs1 libicu63 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf python-babel-localedata python2 python2-minimal python2.7 python2.7-minimal python3 python3-alabaster python3-all python3-all-dev python3-attr python3-babel python3-certifi python3-chardet python3-click python3-colorama python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-future python3-h5py python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mpi4py python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal sgml-base sphinx-common xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user pciutils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python2-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python-attr-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-future-doc python-h5py-doc python-jinja2-doc python-nose-doc gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pandas-doc python3-statsmodels python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-scipy-doc python-setuptools-doc dvipng imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc texlive-fonts-recommended texlive-latex-extra texlive-plain-generic python3.7-venv python3.7-doc python3.8-venv python3.8-doc sgml-base-doc Recommended packages: python-dev curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers javascript-common krb5-locales libltdl-dev libopenmpi-dev xauth libmail-sendmail-perl libpaper-utils python3-pil python3-matplotlib python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-openmpi-103 libhwloc-plugins libhwloc15 libibverbs1 libicu63 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf python-babel-localedata python2 python2-minimal python2.7 python2.7-minimal python3 python3-alabaster python3-all python3-all-dev python3-attr python3-babel python3-certifi python3-chardet python3-click python3-colorama python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-future python3-h5py python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mpi4py python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-python-biom-format-dummy sgml-base sphinx-common xml-core zlib1g-dev 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 96.5 MB of archives. After this operation, 527 MB of additional disk space will be used. Get:1 copy:/<>/resolver-t5jpTw/apt_archive ./ sbuild-build-depends-python-biom-format-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el liblocale-gettext-perl ppc64el 1.07-4 [17.5 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.7-minimal ppc64el 3.7.5-2 [549 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el libexpat1 ppc64el 2.2.9-1 [77.4 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.7-minimal ppc64el 3.7.5-2 [2026 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-minimal ppc64el 3.7.5-1ubuntu1 [23.3 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el mime-support all 3.64ubuntu1 [30.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el libmpdec2 ppc64el 2.4.2-2 [86.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.7-stdlib ppc64el 3.7.5-2 [1788 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.7 ppc64el 3.7.5-2 [301 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3-stdlib ppc64el 3.7.5-1ubuntu1 [6844 B] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el python3 ppc64el 3.7.5-1ubuntu1 [47.2 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el groff-base ppc64el 1.22.4-4 [941 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el libpipeline1 ppc64el 1.5.1-3 [28.5 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el man-db ppc64el 2.9.0-2 [1145 kB] Get:19 http://ftpmaster.internal/ubuntu focal/universe ppc64el libpython2.7-minimal ppc64el 2.7.17-1 [335 kB] Get:20 http://ftpmaster.internal/ubuntu focal/universe ppc64el python2.7-minimal ppc64el 2.7.17-1 [1448 kB] Get:21 http://ftpmaster.internal/ubuntu focal/universe ppc64el python2-minimal ppc64el 2.7.17-1 [27.8 kB] Get:22 http://ftpmaster.internal/ubuntu focal/universe ppc64el libpython2.7-stdlib ppc64el 2.7.17-1 [1948 kB] Get:23 http://ftpmaster.internal/ubuntu focal/universe ppc64el python2.7 ppc64el 2.7.17-1 [248 kB] Get:24 http://ftpmaster.internal/ubuntu focal/universe ppc64el libpython2-stdlib ppc64el 2.7.17-1 [7400 B] Get:25 http://ftpmaster.internal/ubuntu focal/universe ppc64el python2 ppc64el 2.7.17-1 [26.5 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.8-minimal ppc64el 3.8.0-5 [707 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.8-minimal ppc64el 3.8.0-5 [2142 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el sgml-base all 1.29.1 [12.4 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic-mgc ppc64el 1:5.37-6 [209 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic1 ppc64el 1:5.37-6 [91.9 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el file ppc64el 1:5.37-6 [24.0 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el libelf1 ppc64el 0.176-1.1 [51.6 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el libglib2.0-0 ppc64el 2.63.3-1 [1375 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el libicu63 ppc64el 63.2-2 [8505 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-8ubuntu1 [680 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-pkg-resources all 41.4.0-1 [100 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-six all 1.12.0-2build1 [11.7 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el bash-completion all 1:2.9-1ubuntu1 [177 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext-base ppc64el 0.19.8.1-10 [52.7 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el libedit2 ppc64el 3.1-20191211-1 [107 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el libevent-2.1-7 ppc64el 2.1.11-stable-1 [152 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libkrb5support0 ppc64el 1.17-6 [35.4 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libk5crypto3 ppc64el 1.17-6 [102 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el libkeyutils1 ppc64el 1.6-6ubuntu1 [11.3 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el libkrb5-3 ppc64el 1.17-6 [371 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el libgssapi-krb5-2 ppc64el 1.17-6 [135 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el openssh-client ppc64el 1:8.1p1-1 [721 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el autoconf all 2.69-11ubuntu1 [321 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main ppc64el autopoint all 0.19.8.1-10 [412 kB] Get:54 http://ftpmaster.internal/ubuntu focal/universe ppc64el cython ppc64el 0.29.14-0.1 [1303 kB] Get:55 http://ftpmaster.internal/ubuntu focal/universe ppc64el cython3 ppc64el 0.29.14-0.1 [1873 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el libtool all 2.4.6-11 [194 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main ppc64el libarchive-zip-perl all 1.67-1 [90.4 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el dwz ppc64el 0.13-5 [136 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext ppc64el 0.19.8.1-10 [959 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main ppc64el po-debconf all 1.0.21 [233 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main ppc64el debhelper all 12.7.1ubuntu1 [875 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-distutils all 3.8.0-1 [142 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-python all 4.20191017ubuntu1 [88.5 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main ppc64el xml-core all 0.18+nmu1 [21.6 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main ppc64el docutils-common all 0.15.2+dfsg-1 [156 kB] Get:74 http://ftpmaster.internal/ubuntu focal/universe ppc64el help2man ppc64el 1.47.12 [173 kB] Get:75 http://ftpmaster.internal/ubuntu focal/universe ppc64el libaec0 ppc64el 1.0.4-1 [24.4 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main ppc64el libblas3 ppc64el 3.9.0-1 [211 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main ppc64el libevent-core-2.1-7 ppc64el 2.1.11-stable-1 [96.6 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.11-stable-1 [7620 B] Get:79 http://ftpmaster.internal/ubuntu focal/main ppc64el libexpat1-dev ppc64el 2.2.9-1 [121 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main ppc64el libgfortran5 ppc64el 9.2.1-21ubuntu1 [398 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main ppc64el libltdl7 ppc64el 2.4.6-11 [44.1 kB] Get:82 http://ftpmaster.internal/ubuntu focal/universe ppc64el libhwloc15 ppc64el 2.1.0+dfsg-2 [150 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main ppc64el libnl-3-200 ppc64el 3.4.0-1 [60.0 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main ppc64el libnl-route-3-200 ppc64el 3.4.0-1 [157 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main ppc64el libibverbs1 ppc64el 27.0-1 [56.5 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main ppc64el libpciaccess0 ppc64el 0.16-0ubuntu1 [19.9 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main ppc64el ocl-icd-libopencl1 ppc64el 2.2.11-1ubuntu1 [30.1 kB] Get:88 http://ftpmaster.internal/ubuntu focal/universe ppc64el libhwloc-plugins ppc64el 2.1.0+dfsg-2 [14.3 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe ppc64el libpmix2 ppc64el 3.1.4-1build1 [464 kB] Get:90 http://ftpmaster.internal/ubuntu focal/universe ppc64el libopenmpi3 ppc64el 4.0.2-5 [2021 kB] Get:91 http://ftpmaster.internal/ubuntu focal/universe ppc64el libsz2 ppc64el 1.0.4-1 [5416 B] Get:92 http://ftpmaster.internal/ubuntu focal/universe ppc64el libhdf5-openmpi-103 ppc64el 1.10.4+repack-10 [1302 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main ppc64el libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main ppc64el libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main ppc64el libjs-sphinxdoc all 1.8.5-4 [96.7 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main ppc64el liblapack3 ppc64el 3.9.0-1 [2114 kB] Get:97 http://ftpmaster.internal/ubuntu focal/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.3-7 [30.3 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.7 ppc64el 3.7.5-2 [1562 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.7-dev ppc64el 3.7.5-2 [4055 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3-dev ppc64el 3.7.5-1ubuntu1 [6944 B] Get:101 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.8-stdlib ppc64el 3.8.0-5 [1711 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.8 ppc64el 3.8.0-5 [1686 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3.8-dev ppc64el 3.8.0-5 [4322 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main ppc64el libpython3-all-dev ppc64el 3.7.5-1ubuntu1 [1124 B] Get:105 http://ftpmaster.internal/ubuntu focal/universe ppc64el openmpi-common all 4.0.2-5 [150 kB] Get:106 http://ftpmaster.internal/ubuntu focal/universe ppc64el openmpi-bin ppc64el 4.0.2-5 [70.5 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main ppc64el python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.8 ppc64el 3.8.0-5 [355 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-all ppc64el 3.7.5-1ubuntu1 [1124 B] Get:110 http://ftpmaster.internal/ubuntu focal/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-1ubuntu3 [176 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.7-dev ppc64el 3.7.5-2 [513 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-dev ppc64el 3.7.5-1ubuntu1 [1316 B] Get:113 http://ftpmaster.internal/ubuntu focal/main ppc64el python3.8-dev ppc64el 3.8.0-5 [510 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-all-dev ppc64el 3.7.5-1ubuntu1 [1128 B] Get:115 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-attr all 18.2.0-1build1 [29.7 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-tz all 2019.3-1 [24.4 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-babel all 2.6.0+dfsg.1-1 [83.4 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-certifi all 2019.11.28-1 [149 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-chardet all 3.0.4-4 [80.6 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-colorama all 0.3.7-1 [14.9 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-click all 7.0-2 [64.8 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-dateutil all 2.7.3-3 [63.3 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-decorator all 4.3.0-1.1build1 [9652 B] Get:124 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-roman all 2.0.0-3build1 [8728 B] Get:125 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-docutils all 0.15.2+dfsg-1 [366 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-future all 0.16.0-1 [334 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-numpy ppc64el 1:1.17.4-3ubuntu2 [6384 kB] Get:128 http://ftpmaster.internal/ubuntu focal/universe ppc64el mpi-default-bin ppc64el 1.13 [2968 B] Get:129 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-mpi4py ppc64el 3.0.2-13build1 [663 kB] Get:130 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-h5py ppc64el 2.10.0-2build1 [1185 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-idna all 2.6-2build1 [32.8 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-imagesize all 1.2.0-1 [5808 B] Get:133 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-markupsafe ppc64el 1.1.0-1build1 [15.5 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-jinja2 all 2.10-2ubuntu2 [95.5 kB] Get:135 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-nose all 1.3.7-4 [116 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-pyparsing all 2.4.2-1 [58.8 kB] Get:137 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-packaging all 19.1-2 [21.7 kB] Get:138 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-pandas-lib ppc64el 0.25.3+dfsg-4 [6722 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-pandas all 0.25.3+dfsg-4 [1967 kB] Get:140 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-pygments all 2.3.1+dfsg-1ubuntu2 [579 kB] Get:141 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-urllib3 all 1.24.1-1ubuntu2 [83.9 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-requests all 2.21.0-1 [46.8 kB] Get:143 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-setuptools all 41.4.0-1 [255 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main ppc64el sphinx-common all 1.8.5-4 [492 kB] Get:145 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-alabaster all 0.7.8-1build1 [18.7 kB] Get:146 http://ftpmaster.internal/ubuntu focal/main ppc64el python3-sphinx all 1.8.5-4 [482 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe ppc64el python3-scipy ppc64el 1.3.2-0ubuntu1 [13.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.5 MB in 2s (48.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Unpacking python3-scipy (1.3.2-0ubuntu1) ... Selecting previously unselected package sbuild-build-depends-python-biom-format-dummy. Preparing to unpack .../123-sbuild-build-depends-python-biom-format-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.1-3) ... Setting up libpciaccess0:ppc64el (0.16-0ubuntu1) ... Setting up libkeyutils1:ppc64el (1.6-6ubuntu1) ... Setting up libpython3.8-minimal:ppc64el (3.8.0-5) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:ppc64el (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:ppc64el (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libaec0:ppc64el (1.0.4-1) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up libkrb5support0:ppc64el (1.17-6) ... Setting up libpython2.7-stdlib:ppc64el (2.7.17-1) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:ppc64el (3.9.0-1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libexpat1-dev:ppc64el (2.2.9-1) ... Setting up bash-completion (1:2.9-1ubuntu1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up libevent-core-2.1-7:ppc64el (2.1.11-stable-1) ... Setting up libevent-2.1-7:ppc64el (2.1.11-stable-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:ppc64el (1.17-6) ... Setting up libltdl7:ppc64el (2.4.6-11) ... Setting up libgfortran5:ppc64el (9.2.1-21ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-1ubuntu3) ... Setting up python3.8-minimal (3.8.0-5) ... Setting up ocl-icd-libopencl1:ppc64el (2.2.11-1ubuntu1) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libnl-3-200:ppc64el (3.4.0-1) ... Setting up openmpi-common (4.0.2-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.29.1) ... Setting up libkrb5-3:ppc64el (1.17-6) ... Setting up libmpdec2:ppc64el (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:ppc64el (3.8.0-5) ... Setting up python3.8 (3.8.0-5) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-8ubuntu1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libsz2:ppc64el (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libevent-pthreads-2.1-7:ppc64el (2.1.11-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpython3.7-stdlib:ppc64el (3.7.5-2) ... Setting up liblapack3:ppc64el (3.9.0-1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up python2.7 (2.7.17-1) ... Setting up libpython3.7:ppc64el (3.7.5-2) ... Setting up libtool (2.4.6-11) ... Setting up libpython2-stdlib:ppc64el (2.7.17-1) ... Setting up libpython3.7-dev:ppc64el (3.7.5-2) ... Setting up libedit2:ppc64el (3.1-20191211-1) ... Setting up m4 (1.4.18-4) ... Setting up python2 (2.7.17-1) ... Setting up libnl-route-3-200:ppc64el (3.4.0-1) ... Setting up help2man (1.47.12) ... Setting up libpython3.8:ppc64el (3.8.0-5) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libhwloc15:ppc64el (2.1.0+dfsg-2) ... Setting up libgssapi-krb5-2:ppc64el (1.17-6) ... Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-4) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython3-stdlib:ppc64el (3.7.5-1ubuntu1) ... Setting up liblbfgsb0:ppc64el (3.0+dfsg.3-7) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.5-2) ... Setting up cython (0.29.14-0.1) ... Setting up libibverbs1:ppc64el (27.0-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libpython3-dev:ppc64el (3.7.5-1ubuntu1) ... Setting up openssh-client (1:8.1p1-1) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up libhwloc-plugins:ppc64el (2.1.0+dfsg-2) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (1.1.0-1build1) ... Setting up python3.7-dev (3.7.5-2) ... Setting up python3-tz (2019.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-2build1) ... Setting up python3-roman (2.0.0-3build1) ... Setting up python3-decorator (4.3.0-1.1build1) ... Setting up python3-jinja2 (2.10-2ubuntu2) ... Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... Setting up python3-pyparsing (2.4.2-1) ... Setting up python3-certifi (2019.11.28-1) ... Setting up libpython3.8-dev:ppc64el (3.8.0-5) ... Setting up libpython3-all-dev:ppc64el (3.7.5-1ubuntu1) ... Setting up sphinx-common (1.8.5-4) ... Setting up python3-idna (2.6-2build1) ... Setting up cython3 (0.29.14-0.1) ... Setting up python3-urllib3 (1.24.1-1ubuntu2) ... Setting up python3.8-dev (3.8.0-5) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up python3-imagesize (1.2.0-1) ... Setting up python3-pkg-resources (41.4.0-1) ... Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu1) ... Setting up python3-attr (18.2.0-1build1) ... Setting up python3-setuptools (41.4.0-1) ... Setting up libpmix2:ppc64el (3.1.4-1build1) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.3.7-1) ... Setting up python3-alabaster (0.7.8-1build1) ... Setting up po-debconf (1.0.21) ... Setting up libopenmpi3:ppc64el (4.0.2-5) ... Setting up python3-all (3.7.5-1ubuntu1) ... Setting up python3-click (7.0-2) ... Setting up python3-nose (1.3.7-4) ... Setting up python3-packaging (19.1-2) ... Setting up libhdf5-openmpi-103:ppc64el (1.10.4+repack-10) ... Setting up python3-chardet (3.0.4-4) ... Setting up python3-dev (3.7.5-1ubuntu1) ... Setting up python3-requests (2.21.0-1) ... Setting up python3-numpy (1:1.17.4-3ubuntu2) ... Setting up python3-future (0.16.0-1) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up openmpi-bin (4.0.2-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-all-dev (3.7.5-1ubuntu1) ... Setting up python3-scipy (1.3.2-0ubuntu1) ... /usr/lib/python3/dist-packages/scipy/optimize/_shgo.py:495: SyntaxWarning: "is" with a literal. Did you mean "=="? if cons['type'] is 'ineq': /usr/lib/python3/dist-packages/scipy/optimize/_shgo.py:743: SyntaxWarning: "is not" with a literal. Did you mean "!="? if len(self.X_min) is not 0: Setting up python3-pandas-lib (0.25.3+dfsg-4) ... Setting up mpi-default-bin (1.13) ... Setting up python3-mpi4py (3.0.2-13build1) ... Setting up python3-pandas (0.25.3+dfsg-4) ... /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 /usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="? False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632 Setting up python3-h5py (2.10.0-2build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for sgml-base (1.29.1) ... Setting up docutils-common (0.15.2+dfsg-1) ... Processing triggers for sgml-base (1.29.1) ... Setting up python3-docutils (0.15.2+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.5-4) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 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libtsan0_9.2.1-21ubuntu1 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu4 mpi-default-bin_1.13 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_4.0.2-5 openmpi-common_4.0.2-5 openssh-client_1:8.1p1-1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python-babel-localedata_2.6.0+dfsg.1-1 python2_2.7.17-1 python2-minimal_2.7.17-1 python2.7_2.7.17-1 python2.7-minimal_2.7.17-1 python3_3.7.5-1ubuntu1 python3-alabaster_0.7.8-1build1 python3-all_3.7.5-1ubuntu1 python3-all-dev_3.7.5-1ubuntu1 python3-attr_18.2.0-1build1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4 python3-click_7.0-2 python3-colorama_0.3.7-1 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1build1 python3-dev_3.7.5-1ubuntu1 python3-distutils_3.8.0-1 python3-docutils_0.15.2+dfsg-1 python3-future_0.16.0-1 python3-h5py_2.10.0-2build1 python3-idna_2.6-2build1 python3-imagesize_1.2.0-1 python3-jinja2_2.10-2ubuntu2 python3-lib2to3_3.8.0-1 python3-markupsafe_1.1.0-1build1 python3-minimal_3.7.5-1ubuntu1 python3-mpi4py_3.0.2-13build1 python3-nose_1.3.7-4 python3-numpy_1:1.17.4-3ubuntu2 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_41.4.0-1 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pyparsing_2.4.2-1 python3-requests_2.21.0-1 python3-roman_2.0.0-3build1 python3-scipy_1.3.2-0ubuntu1 python3-setuptools_41.4.0-1 python3-six_1.12.0-2build1 python3-sphinx_1.8.5-4 python3-tz_2019.3-1 python3-urllib3_1.24.1-1ubuntu2 python3.7_3.7.5-2 python3.7-dev_3.7.5-2 python3.7-minimal_3.7.5-2 python3.8_3.8.0-5 python3.8-dev_3.8.0-5 python3.8-minimal_3.8.0-5 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 sphinx-common_1.8.5-4 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu4 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Aug 16 03:07:47 2019 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.7+dfsg-3ubuntu2.dsc dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.7+dfsg dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg-3ubuntu2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying enable_sloppy_sphinx_build.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying sphinx.ext.pngmath.patch dpkg-source: info: applying posix_shell.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18342688 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18342688 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18342688 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.7+dfsg-3ubuntu2 dpkg-buildpackage: info: source distribution eoan dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean --test-nose -i python{version} -p "3.8 3.7" I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p "3.8 3.7" I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>/python-biom-format-2.1.7+dfsg' # arch USE_CYTHON=true dh_auto_build pybuild --build --test-nose -i python{version} -p "3.8 3.7" I: pybuild base:217: /usr/bin/python3.8 setup.py build Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running build running build_py creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/err.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/exception.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/parse.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_head.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/test_err.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/test_util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests copying biom/tests/test_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/python-biom-format-2.1.7+dfsg/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/python-biom-format-2.1.7+dfsg/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/python-biom-format-2.1.7+dfsg/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/_filter.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/_subsample.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/_subsample.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/_transform.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom copying biom/_transform.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build creating build/temp.linux-ppc64el-3.8 creating build/temp.linux-ppc64el-3.8/biom powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_filter.c -o build/temp.linux-ppc64el-3.8/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.8/biom/_filter.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_filter.cpython-38-powerpc64le-linux-gnu.so building 'biom._transform' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_transform.c -o build/temp.linux-ppc64el-3.8/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.8/biom/_transform.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_transform.cpython-38-powerpc64le-linux-gnu.so building 'biom._subsample' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_subsample.c -o build/temp.linux-ppc64el-3.8/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.8/biom/_subsample.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_subsample.cpython-38-powerpc64le-linux-gnu.so I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/err.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/exception.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/parse.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_head.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_err.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_util.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_filter.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_subsample.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_subsample.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_transform.c -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_transform.pyx -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data creating /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-ppc64el-3.7 creating build/temp.linux-ppc64el-3.7/biom powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-ppc64el-3.7/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.7/biom/_filter.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-powerpc64le-linux-gnu.so building 'biom._transform' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-ppc64el-3.7/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.7/biom/_transform.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-powerpc64le-linux-gnu.so building 'biom._subsample' extension powerpc64le-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-ppc64el-3.7/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O3 -fdebug-prefix-map=/<>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.7/biom/_subsample.o -o /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-powerpc64le-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v1.8.5 making output directory... [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import 'biom': no module named biom Failed to import 'biom.table': no module named biom.table building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] BIOM_LICENSE writing output... [ 16%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 41%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 66%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 91%] documentation/table_objects writing output... [100%] index /<>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /<>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated /<>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /<>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated generating indices... writing additional pages... search copying images... [100%] _static/biom-format.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 6 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v1.8.5 making output directory... [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import 'biom': no module named biom Failed to import 'biom.table': no module named biom.table building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } build succeeded, 2 warnings. The manual pages are in build/man. make[1]: Leaving directory '/<>/python-biom-format-2.1.7+dfsg' rm -f debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>/python-biom-format-2.1.7+dfsg' cp -a examples /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build cp -a examples /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build dh_auto_test pybuild --test --test-nose -i python{version} -p "3.8 3.7" I: pybuild base:217: cd /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build; python3.8 -m nose -v /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3255: SyntaxWarning: "is" with a literal. Did you mean "=="? if axis is 'both' and not (alignable_o and alignable_s): /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3257: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'sample' and not alignable_s: /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3259: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'observation' and not alignable_o: /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3261: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'detect' and not (alignable_o or alignable_s): /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3264: SyntaxWarning: "is" with a literal. Did you mean "=="? if axis is 'both': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3266: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'detect': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3272: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'sample': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3274: SyntaxWarning: "is" with a literal. Did you mean "=="? elif axis is 'observation': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3509: SyntaxWarning: "is" with a literal. Did you mean "=="? if sample is 'union': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3511: SyntaxWarning: "is" with a literal. Did you mean "=="? elif sample is 'intersection': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3517: SyntaxWarning: "is" with a literal. Did you mean "=="? if observation is 'union': /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3520: SyntaxWarning: "is" with a literal. Did you mean "=="? elif observation is 'intersection': Correctly adds observation metadata without casting it. ... ok Correctly adds observation metadata with casting. ... ok Correctly adds sample metadata without casting it. ... ok Correctly adds sample metadata with casting. ... ok test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok Correctly raises politically correct error upon invalid input. ... ok Correctly subsets observations in a table. ... ok Correctly subsets samples in a hdf5 table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3980: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. data = np.hstack(h5_data[start:end] /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3982: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. indices = np.hstack(h5_indices[start:end] ok Correctly subsets samples in a table. ... ok Correctly subsets samples in a hdf5 table ... ok TableSummarizer functions as expected ... ok TableSummarizer functions as expected with qualitative=True ... ok Correctly converts biom to classic. ... ok Correctly converts biom to classic with metadata renaming. ... ok Correctly converts classic to biom. ... ok Correctly converts classic to biom with metadata. ... ok Correctly converts json to HDF5 changing the observation metadata ... ok Correctly converts json to HDF5 changing the sample metadata ... ok test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok Correctly invalidates a table that is... invalid. ... ok Test an invalid HDF5 table ... ERROR test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok Correctly validates a table that is indeed... valid. ... ok validates table:columns: fields ... ok validates data: fields ... ok Make sure we have a datetime stamp ... ok Takes a dense matrix field and validates ... ok Should match format string ... ok validates format url ... ok Should have some string for generated by ... ok Test a valid HDF5 table ... ERROR test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ERROR Make sure we have a valid matrix type ... ok Make sure we have a valid matrix type ... ok Can be nullable or an object ... ok Should just work. ... ok validates rows: field ... ok validates shape information ... ok Takes a sparse matrix field and validates ... ok Should be valid table type ... ok test_test_empty (biom.tests.test_err.ErrModeTests) ... ok test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok test_contains (biom.tests.test_err.ErrorProfileTests) ... ok test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok test_state (biom.tests.test_err.ErrorProfileTests) ... ok test_test (biom.tests.test_err.ErrorProfileTests) ... ok test_errcheck (biom.tests.test_err.SupportTests) ... ok test_errstate (biom.tests.test_err.SupportTests) ... ok test_geterr (biom.tests.test_err.SupportTests) ... ok test_geterrcall (biom.tests.test_err.SupportTests) ... ok test_seterr (biom.tests.test_err.SupportTests) ... ok test_seterrcall (biom.tests.test_err.SupportTests) ... ok test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok get a generatedby string ... ok MetadataMap functions as expected ... ok MetadataMap functions as expected w user-provided header ... ok MetadataMap functions as expected w process_fns ... ok test the biom otu table parser ... ok tests for parse_biom_table when we do not have h5py ... ok Make sure we can parse a HDF5 table through the same loader ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_parse.py:237: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. Table.from_hdf5(h5py.File('test_data/test.biom')) ok test the biom table parser subsetting ... ok tests for parse_biom_table when we have h5py ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_parse.py:276: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = parse_biom_table(h5py.File('test_data/test.biom')) ok empty uc file returns empty Table ... ok invalid query sequence identifier detected ... ok single library seed observed ... ok single new seed observed ... ok new and library seeds observed ... ok multiple new seeds observed ... ok sample id with underscores is correctly processed ... ok Yield tables binned by observation metadata ... ok Yield tables binned by sample metadata ... ok test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok Collapse observations by arbitrary metadata ... ok Collapse observations by arbitary metadata ... ok Collapse observations by 1-M metadata using divide mode ... ok Collapse observations by arbitary metadata ... ok Collapse samples by arbitrary metadata ... ok Collapse samples by arbitary metadata ... ok Collapse samples by 1-M metadata using divide mode ... ok Collapse samples by arbitary metadata ... ok Should convert other to sparse type ... ok test_copy_data (biom.tests.test_table.SparseTableTests) ... ok test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok test_data (biom.tests.test_table.SparseTableTests) ... ok check equality between tables ... ok test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Print out self in a delimited form ... ok sparse equality ... ok Parses a classic table ... ok test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok Test correctly computes density of table. ... ok test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok Should iterate over samples ... ok test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Iterate over observations of sparse matrix ... ok Iterates data by observations ... ok Iterates data by observations from a single sample. ... ok Iterates observations ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Iterate over samples of sparse matrix ... ok Iterates data by samples ... ok Iterates data by samples with a single observation. ... ok Iterates samples ... ok Merge two tables ... ok Return a list of nonzero positions ... ok Returns nonzero counts over an axis ... ok Returns nonzero counts over an axis ... ok test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok normalize observations by sample ... ok normalize sample by observation ... ok test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok test_pa (biom.tests.test_table.SparseTableTests) ... ok test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok rank observations by sample ... ok rank observations by sample with alt method ... ok rank samples by observation ... ok Reduce method ... ok table sorted by a function and provided axis ... ok sorts tables by arbitrary order ... ok test_subsample (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok subsample would except when if metadata were present ... ok test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok Test of sum! ... ok Should convert a self styled vector to numpy type ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of integers ... ok Get a BIOM format string for a dense table of integers ... ok test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of integers ... ok Get a BIOM format string for a sparse table of integers ... ok Transform axis by arbitrary function ... ok test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok Should transpose a sparse table ... ok ids are updated as expected ... ok test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok ids are updated as expected ... ok test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_different_order (biom.tests.test_table.SupportTests) ... ok test_concat_empty (biom.tests.test_table.SupportTests) ... ok test_concat_multiple (biom.tests.test_table.SupportTests) ... ok test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok test_concat_observations (biom.tests.test_table.SupportTests) ... ok test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_samples (biom.tests.test_table.SupportTests) ... ok test_concat_table_type (biom.tests.test_table.SupportTests) ... ok test_head (biom.tests.test_table.SupportTests) ... ok test_head_bounded (biom.tests.test_table.SupportTests) ... ok test_head_overstep (biom.tests.test_table.SupportTests) ... ok test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok returns a dict for list lookups ... ok prefer x ... ok test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. self._set_arrayXarray(i, j, x) ok test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok Make sure a TableException can be raised ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok convert (values, (row, col)) to scipy ... ok Take a dict and convert to sparse ... ok Take a list of dicts and condense down to a single dict ... ok convert [[row,col,value], ...] to scipy ... ok lists of nparrays to sparse ... ok list of lil_matrix to sparse ... ok Convert nparray to sparse ... ok Convert to expected sparse types ... ok add group metadata works correctly ... ok add group metadata works with existing metadata ... ok add_sample_metadata functions with single md entry ... ok add_sample_metadata functions with existing metadata ... ok add_metadata functions with more than one md entry ... ok add_sample_metadata functions with more than one md entry ... ok test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok Cast metadata objects to defaultdict to support default values ... ok Properly converts ScipySparseMat vectors to dense numpy repr. ... ok test_data_property (biom.tests.test_table.TableTests) ... ok test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok test_del_metadata_full (biom.tests.test_table.TableTests) ... ok test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok What's your type? ... ok Test whether two matrices are equal. ... ok Verify ValueError raised! ... ok Parse a hdf5 formatted BIOM table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:629: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom')) ok test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:610: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom'), ok Parse a hdf5 formatted BIOM table w/o metadata ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:595: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/empty.biom')) ok HDF5 biom parse successfully loads an empty table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:914: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/empty.biom')) ok test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:619: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom')) ok test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok Parse a observation subset of a hdf5 formatted BIOM table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:835: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom'), /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3980: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. data = np.hstack(h5_data[start:end] /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:3982: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. indices = np.hstack(h5_indices[start:end] ok Parse a observation subset of a hdf5 formatted BIOM table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:807: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom'), ok Parse a sample subset of a hdf5 formatted BIOM table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:743: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom'), ids=samples) ok Parse a sample subset of a hdf5 formatted BIOM table ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:715: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. t = Table.from_hdf5(h5py.File('test_data/test.biom'), ids=samples, ok hdf5 biom table parse throws error with invalid parameters ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:898: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. Table.from_hdf5(h5py.File('test_data/test.biom'), /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:903: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details. Table.from_hdf5(h5py.File('test_data/test.biom'), ok test_from_tsv (biom.tests.test_table.TableTests) ... ok test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok Test grabbing a column from the matrix. ... ok Test grabbing a row from the matrix. ... ok Return the value located in the matrix by the ids ... ok getitem should work as expeceted ... ok Test getting an element from the matrix. ... ok Handles invalid input ... ok Returns the observation group metadata ... ok Returns the sample group metadata ... ok Index all the ids!!! ... ok Correctly handles invalid input. ... ok returns the observation index ... ok returns the sample index ... ok to_sparse in constructor should be triggered ... ok Combine ids, intersection ... ok returns true if empty ... ok test_length (biom.tests.test_table.TableTests) ... ok test_max_observation (biom.tests.test_table.TableTests) ... ok test_max_sample (biom.tests.test_table.TableTests) ... ok test_max_whole (biom.tests.test_table.TableTests) ... ok Correctly handles invalid input. ... ok returns the observation metadata ... ok returns the observation metadata for a given id ... ok Return the sample metadata ... ok returns the sample metadata for a given id ... ok test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok test_min_observation (biom.tests.test_table.TableTests) ... ok test_min_sample (biom.tests.test_table.TableTests) ... ok test_min_whole (biom.tests.test_table.TableTests) ... ok Test whether two matrices are not equal. ... ok What is your NNZ? ... ok test_nnz_issue_727 (biom.tests.test_table.TableTests) ... /usr/lib/python3/dist-packages/scipy/sparse/_index.py:84: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. self._set_intXint(row, col, x.flat[0]) ok Verify observation exist! ... ok __repr__ method of biom.table.Table ... ok Verify samples exist! ... ok What kind of shape are you in? ... ok test_to_dataframe (biom.tests.test_table.TableTests) ... /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:1476: FutureWarning: SparseDataFrame is deprecated and will be removed in a future version. Use a regular DataFrame whose columns are SparseArrays instead. See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more. exp = pd.SparseDataFrame(np.array([[0.0, 1.0, 2.0], [3.0, 4.0, 5.0]]), /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:4048: FutureWarning: SparseSeries is deprecated and will be removed in a future version. Use a Series with sparse values instead. >>> series = pd.Series(pd.SparseArray(...)) See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more. mat = [pd.SparseSeries(r.toarray().squeeze()) /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:4052: FutureWarning: SparseDataFrame is deprecated and will be removed in a future version. Use a regular DataFrame whose columns are SparseArrays instead. See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more. return constructor(mat, index=index, columns=columns) /usr/lib/python3/dist-packages/pandas/core/frame.py:3471: FutureWarning: SparseSeries is deprecated and will be removed in a future version. Use a Series with sparse values instead. >>> series = pd.Series(pd.SparseArray(...)) See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more. return klass(values, index=self.index, name=items, fastpath=True) ok test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok Write a file ... ok test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok Successfully writes an empty OTU table in HDF5 format ... ok Successfully writes an empty OTU table in HDF5 format ... ok test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok Print out self in a delimited form ... ok Combine unique ids, union ... ok Make sure the metadata is sane (including obs/sample ids) ... ok test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY test_biom_open_json (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok flatten should remove one level of nesting from nested sequences ... ok flatten should not change non-nested sequences (except to list) ... ok test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok Getting the biom project directory functions as expected. ... ok test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok test_load_classic (biom.tests.test_util.UtilTests) ... ok test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok natsort should perform numeric comparisons on strings ... ok parse_biom_config_files functions as expected. ... ok Make sure we have the expected md5 with varied input types ... ok unzip(items) should be the inverse of zip(*items) ... ok ====================================================================== ERROR: Test an invalid HDF5 table ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/numpy/testing/_private/decorators.py", line 155, in skipper_func return f(*args, **kwargs) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_validate_table.py", line 88, in test_invalid_hdf5 copy(self.hdf5_file_valid, 'invalid.hdf5') File "/usr/lib/python3.8/shutil.py", line 409, in copy copyfile(src, dst, follow_symlinks=follow_symlinks) File "/usr/lib/python3.8/shutil.py", line 259, in copyfile with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst: FileNotFoundError: [Errno 2] No such file or directory: '/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/examples/min_sparse_otu_table_hdf5.biom' ====================================================================== ERROR: Test a valid HDF5 table ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/numpy/testing/_private/decorators.py", line 155, in skipper_func return f(*args, **kwargs) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_validate_table.py", line 79, in test_valid_hdf5 obs = self.cmd(table=self.hdf5_file_valid) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_validator.py", line 112, in __call__ return self.run(table=table, format_version=format_version, File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_validator.py", line 78, in run is_json = not is_hdf5_file(kwargs['table']) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/util.py", line 518, in is_hdf5_file with open(fp, 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: '/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/examples/min_sparse_otu_table_hdf5.biom' ====================================================================== ERROR: test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/numpy/testing/_private/decorators.py", line 155, in skipper_func return f(*args, **kwargs) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_validate_table.py", line 62, in test_valid_hdf5_metadata_v210 obs = self.cmd(table=self.hdf5_file_valid, File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_validator.py", line 112, in __call__ return self.run(table=table, format_version=format_version, File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_validator.py", line 78, in run is_json = not is_hdf5_file(kwargs['table']) File "/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/util.py", line 518, in is_hdf5_file with open(fp, 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: '/<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build/examples/min_sparse_otu_table_hdf5.biom' ---------------------------------------------------------------------- Ran 336 tests in 5.681s FAILED (SKIP=1, errors=3) E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd /<>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.8_biom-format/build; python3.8 -m nose -v dh_auto_test: pybuild --test --test-nose -i python{version} -p "3.8 3.7" returned exit code 13 make[1]: *** [debian/rules:36: override_dh_auto_test] Error 255 make[1]: Leaving directory '/<>/python-biom-format-2.1.7+dfsg' make: *** [debian/rules:18: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200105-1049 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 169444 Build-Time: 31 Distribution: focal Fail-Stage: build Host Architecture: ppc64el Install-Time: 54 Job: python-biom-format_2.1.7+dfsg-3ubuntu2.dsc Machine Architecture: ppc64el Package: python-biom-format Package-Time: 87 Source-Version: 2.1.7+dfsg-3ubuntu2 Space: 169444 Status: attempted Version: 2.1.7+dfsg-3ubuntu2 -------------------------------------------------------------------------------- Finished at 20200105-1049 Build needed 00:01:27, 169444k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18342688 Scanning for processes to kill in build PACKAGEBUILD-18342688