https://launchpad.net/ubuntu/+archive/test-rebuild-20200327-focal-gcc10/+build/19010207 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-060 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 Apr 04:00:41 ntpdate[1877]: adjust time server 10.211.37.1 offset 0.020702 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 --image-type chroot /home/buildd/filecache-default/dd8fbbe4a386f61f7a7bfaa5a4cddb80aba54f91 Creating target for build PACKAGEBUILD-19010207 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 Starting target for build PACKAGEBUILD-19010207 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal main' 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19010207 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 Adding trusted keys to build-PACKAGEBUILD-19010207 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 Updating target for build PACKAGEBUILD-19010207 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf Packages [3784 B] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main Translation-en [7416 B] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [937 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [503 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8322 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5131 kB] Fetched 15.2 MB in 5s (2777 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-9 libstdc++-9-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-10 g++-10 gcc-10 libasan6 libgcc-10-dev libstdc++-10-dev systemd-timesyncd The following packages will be upgraded: apt binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp fdisk g++ gcc gcc-10-base libapparmor1 libapt-pkg6.0 libatomic1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libfdisk1 libgcc-s1 libgomp1 libmount1 libsmartcols1 libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 login mount passwd pinentry-curses systemd systemd-sysv util-linux 35 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 41.5 MB of archives. After this operation, 93.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu9 [57.9 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf g++ armhf 4:10.0-3ubuntu2 [1584 B] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf gcc armhf 4:10.0-3ubuntu2 [5204 B] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8.1-1ubuntu4 [218 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf cpp armhf 4:10.0-3ubuntu2 [42.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu9 [124 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu9 [19.4 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu9 [163 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu9 [135 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu9 [88.5 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu9 [109 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu9 [957 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200411-0ubuntu1 [7216 B] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200411-0ubuntu1 [121 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200411-0ubuntu1 [86.8 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200411-0ubuntu1 [19.0 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200411-0ubuntu1 [36.2 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200411-0ubuntu1 [34.6 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200411-0ubuntu1 [440 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 245.4-2ubuntu1 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 245.4-2ubuntu1 [3642 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf systemd-timesyncd armhf 245.4-2ubuntu1 [27.9 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu4 [29.0 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu9 [108 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 245.4-2ubuntu1 [249 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 245.4-2ubuntu1 [70.3 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg6.0 armhf 2.0.1ubuntu1 [752 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 2.0.1ubuntu1 [1245 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8.1-1ubuntu4 [750 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libctf0 armhf 2.34-6ubuntu1 [37.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-6ubuntu1 [2093 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-6ubuntu1 [317 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.34-6ubuntu1 [3360 B] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.34-6ubuntu1 [207 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libctf-nobfd0 armhf 2.34-6ubuntu1 [37.9 kB] Get:36 http://ftpmaster.internal/ubuntu focal/universe armhf cpp-10 armhf 10-20200411-0ubuntu1 [6360 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libasan6 armhf 10-20200411-0ubuntu1 [328 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-10-dev armhf 10-20200411-0ubuntu1 [717 kB] Get:39 http://ftpmaster.internal/ubuntu focal/universe armhf gcc-10 armhf 10-20200411-0ubuntu1 [12.8 MB] Get:40 http://ftpmaster.internal/ubuntu focal/universe armhf libstdc++-10-dev armhf 10-20200411-0ubuntu1 [1767 kB] Get:41 http://ftpmaster.internal/ubuntu focal/universe armhf g++-10 armhf 10-20200411-0ubuntu1 [7222 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf pinentry-curses armhf 1.1.0-3build1 [31.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.5 MB in 1s (32.2 MB/s) (Reading database ... 12561 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu9_armhf.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu9) over (1:2.34-0.1ubuntu8) ... Setting up bsdutils (1:2.34-0.1ubuntu9) ... (Reading database ... 12561 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu4_armhf.deb ... Unpacking login (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up login (1:4.8.1-1ubuntu4) ... (Reading database ... 12561 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1ubuntu9_armhf.deb ... Unpacking libblkid1:armhf (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libblkid1:armhf (2.34-0.1ubuntu9) ... (Reading database ... 12561 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu9_armhf.deb ... Unpacking libuuid1:armhf (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libuuid1:armhf (2.34-0.1ubuntu9) ... (Reading database ... 12561 files and directories currently installed.) 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(Reading database ... 12561 files and directories currently installed.) Preparing to unpack .../libatomic1_10-20200411-0ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (10-20200411-0ubuntu1) over (10-20200324-1ubuntu1) ... Preparing to unpack .../libubsan1_10-20200411-0ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (10-20200411-0ubuntu1) over (10-20200324-1ubuntu1) ... Preparing to unpack .../libgomp1_10-20200411-0ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (10-20200411-0ubuntu1) over (10-20200324-1ubuntu1) ... Preparing to unpack .../gcc-10-base_10-20200411-0ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200411-0ubuntu1) over (10-20200324-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200411-0ubuntu1) ... (Reading database ... 12560 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200411-0ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200411-0ubuntu1) over (10-20200324-1ubuntu1) ... 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Setting up binutils-arm-linux-gnueabihf (2.34-6ubuntu1) ... Setting up libstdc++-10-dev:armhf (10-20200411-0ubuntu1) ... Setting up binutils (2.34-6ubuntu1) ... Setting up gcc-10 (10-20200411-0ubuntu1) ... Setting up g++-10 (10-20200411-0ubuntu1) ... Setting up gcc (4:10.0-3ubuntu2) ... Setting up g++ (4:10.0-3ubuntu2) ... Setting up systemd-timesyncd (245.4-2ubuntu1) ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service -> /lib/systemd/system/systemd-timesyncd.service. Setting up systemd (245.4-2ubuntu1) ... Created symlink /etc/systemd/system/systemd-remount-fs.service.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service. Initializing machine ID from KVM UUID. Removing obsolete conffile /etc/dhcp/dhclient-exit-hooks.d/timesyncd ... Removing obsolete conffile /etc/systemd/timesyncd.conf ... Setting up systemd-sysv (245.4-2ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19010207 armhf focal -c chroot:build-PACKAGEBUILD-19010207 --arch=armhf --dist=focal --nolog gpp4_1.3.1-0ubuntu10.dsc Initiating build PACKAGEBUILD-19010207 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-060.buildd +==============================================================================+ | gpp4 1.3.1-0ubuntu10 (armhf) 13 Apr 2020 04:01 | +==============================================================================+ Package: gpp4 Version: 1.3.1-0ubuntu10 Source Version: 1.3.1-0ubuntu10 Distribution: focal Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/gpp4-0bRWAD/gpp4-1.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/gpp4-0bRWAD' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19010207/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gpp4_1.3.1-0ubuntu10.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lbZ203/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lbZ203/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lbZ203/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lbZ203/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lbZ203/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lbZ203/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (81.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libstdc++-9-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lbZ203/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (72.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13518 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-autoreconf, pkg-config, libmmdb2-dev, gfortran, m4 Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, pkg-config, libmmdb2-dev, gfortran, m4 dpkg-deb: building package 'sbuild-build-depends-gpp4-dummy' in '/<>/resolver-MIumwD/apt_archive/sbuild-build-depends-gpp4-dummy.deb'. Ign:1 copy:/<>/resolver-MIumwD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-MIumwD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-MIumwD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-MIumwD/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-MIumwD/apt_archive ./ Packages [563 B] Fetched 2928 B in 0s (92.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gpp4 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-9 libstdc++-9-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-10 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran-10-dev libgfortran5 libglib2.0-0 libicu66 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev groff libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-10 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran-10-dev libgfortran5 libglib2.0-0 libicu66 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-gpp4-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 24.2 MB of archives. After this operation, 82.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-MIumwD/apt_archive ./ sbuild-build-depends-gpp4-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu focal/main armhf gfortran armhf 4:10.0-3ubuntu2 [1352 B] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4build1 [759 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.1-1 [1077 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.64.1-1 [1124 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf libxml2 armhf 2.9.10+dfsg-4build1 [546 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-14 [161 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-2 [90.5 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.10ubuntu1 [877 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran5 armhf 10-20200411-0ubuntu1 [250 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe armhf libgfortran-10-dev armhf 10-20200411-0ubuntu1 [303 kB] Get:38 http://ftpmaster.internal/ubuntu focal/universe armhf gfortran-10 armhf 10-20200411-0ubuntu1 [6725 kB] Get:39 http://ftpmaster.internal/ubuntu focal/universe armhf libmmdb2-0 armhf 2.0.5-1build1 [270 kB] Get:40 http://ftpmaster.internal/ubuntu focal/universe armhf libmmdb2-dev armhf 2.0.5-1build1 [91.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu4 [42.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.2 MB in 1s (31.3 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 13518 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_armhf.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_armhf.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libmmdb2-0:armhf (2.0.5-1build1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:armhf (2.64.1-1) ... No schema files found: doing nothing. Setting up libicu66:armhf (66.1-2ubuntu2) ... Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libmmdb2-dev (2.0.5-1build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up pkg-config (0.29.1-0ubuntu4) ... Setting up libgfortran5:armhf (10-20200411-0ubuntu1) ... Setting up libuchardet0:armhf (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:armhf (10-20200411-0ubuntu1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.10+dfsg-4build1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up gfortran-10 (10-20200411-0ubuntu1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:10.0-3ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-gpp4-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-10_10-20200411-0ubuntu1 g++-9_9.3.0-10ubuntu1 gcc-10_10-20200411-0ubuntu1 gcc-9_9.3.0-10ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-10-dev_10-20200411-0ubuntu1 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200411-0ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1ubuntu1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-arm-linux-gnueabihf_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:10.0-3ubuntu2 cpp-10_10-20200411-0ubuntu1 cpp-9_9.3.0-10ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:10.0-3ubuntu2 g++-10_10-20200411-0ubuntu1 g++-9_9.3.0-10ubuntu1 gcc_4:10.0-3ubuntu2 gcc-10_10-20200411-0ubuntu1 gcc-10-base_10-20200411-0ubuntu1 gcc-9_9.3.0-10ubuntu1 gcc-9-base_9.3.0-10ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gfortran_4:10.0-3ubuntu2 gfortran-10_10-20200411-0ubuntu1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu4 libapt-pkg6.0_2.0.1ubuntu1 libarchive-zip-perl_1.67-2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-10ubuntu1 libasan6_10-20200411-0ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200411-0ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu7 libc-dev-bin_2.31-0ubuntu7 libc6_2.31-0ubuntu7 libc6-dev_2.31-0ubuntu7 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200411-0ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-10-dev_10-20200411-0ubuntu1 libgcc-9-dev_9.3.0-10ubuntu1 libgcc-s1_10-20200411-0ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-10-dev_10-20200411-0ubuntu1 libgfortran5_10-20200411-0ubuntu1 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200411-0ubuntu1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmmdb2-0_2.0.5-1build1 libmmdb2-dev_2.0.5-1build1 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-1ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu1 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-10-dev_10-20200411-0ubuntu1 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200411-0ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.4-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-14 libubsan1_10-20200411-0ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.4-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-21.25 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu4 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu4 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkg-config_0.29.1-0ubuntu4 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gpp4-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.4-2ubuntu1 systemd-sysv_245.4-2ubuntu1 systemd-timesyncd_245.4-2ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Mar 24 14:26:50 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gpp4_1.3.1-0ubuntu10.dsc dpkg-source: info: extracting gpp4 in gpp4-1.3.1 dpkg-source: info: unpacking gpp4_1.3.1.orig.tar.gz dpkg-source: info: unpacking gpp4_1.3.1-0ubuntu10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libtool_ppc64el.patch dpkg-source: info: applying mmdb2.diff Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19010207 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19010207 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19010207 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gpp4 dpkg-buildpackage: info: source version 1.3.1-0ubuntu10 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh_testdir dh_testroot rm -f *-stamp config.log config.cache # Clean up after the build process. [ ! -f Makefile ] || /usr/bin/make distclean # remove the doxygen-generated tree rm -rf doc/ dh_autoreconf_clean dh_clean debian/rules build-arch dh_testdir dh_autoreconf configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:18: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... config/libtool.m4:4176: _LT_LINKER_SHLIBS is expanded from... config/libtool.m4:5259: _LT_LANG_C_CONFIG is expanded from... config/libtool.m4:138: _LT_SETUP is expanded from... config/libtool.m4:67: LT_INIT is expanded from... config/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:12: installing 'config/compile' configure.ac:9: installing 'config/missing' src/Makefile.am: installing 'config/depcomp' CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong" FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong" GCJFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" OBJCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" OBJCXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" ./configure --prefix=/usr checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... armv7l-unknown-linux-gnueabihf checking host system type... armv7l-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert armv7l-unknown-linux-gnueabihf file names to armv7l-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert armv7l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -lgfortran -lm checking for cos in -lm... yes checking for sin in -lm... yes checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking for sys/stat.h... (cached) yes checking for unistd.h... (cached) yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking for an ANSI C-conforming const... yes checking for mode_t... yes checking for off_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for working strtod... yes checking for vprintf... yes checking for _doprnt... no checking for strnlen... yes checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for pow... yes checking for putenv... yes checking for rint... yes checking for setenv... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strrchr... yes checking for strstr... yes checking for strlcpy... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for MMDB... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating gpp4.pc config.status: creating gpp4f.pc config.status: creating gpp4.spec config.status: creating gpp4.info config.status: creating Doxyfile config.status: creating src/Makefile config.status: creating src_f/Makefile config.status: creating data/Makefile config.status: creating test/Makefile config.status: creating src/ccp4_program.h config.status: executing depfiles commands config.status: executing libtool commands touch configure-stamp dh_testdir # Build the libary /usr/bin/make make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_array.lo -MD -MP -MF .deps/ccp4_array.Tpo -c -o ccp4_array.lo ccp4_array.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_array.lo -MD -MP -MF .deps/ccp4_array.Tpo -c ccp4_array.c -fPIC -DPIC -o .libs/ccp4_array.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_array.lo -MD -MP -MF .deps/ccp4_array.Tpo -c ccp4_array.c -o ccp4_array.o >/dev/null 2>&1 mv -f .deps/ccp4_array.Tpo .deps/ccp4_array.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_data.lo -MD -MP -MF .deps/cmap_data.Tpo -c -o cmap_data.lo cmap_data.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_data.lo -MD -MP -MF .deps/cmap_data.Tpo -c cmap_data.c -fPIC -DPIC -o .libs/cmap_data.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_data.lo -MD -MP -MF .deps/cmap_data.Tpo -c cmap_data.c -o cmap_data.o >/dev/null 2>&1 mv -f .deps/cmap_data.Tpo .deps/cmap_data.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmtzlib.lo -MD -MP -MF .deps/cmtzlib.Tpo -c -o cmtzlib.lo cmtzlib.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmtzlib.lo -MD -MP -MF .deps/cmtzlib.Tpo -c cmtzlib.c -fPIC -DPIC -o .libs/cmtzlib.o cmtzlib.c: In function ‘MtzPut’: cmtzlib.c:2949:27: warning: comparison between pointer and zero character constant [-Wpointer-compare] 2949 | if (batch->gonlab[0] != '\0') { | ^~ cmtzlib.c:2949:10: note: did you mean to dereference the pointer? 2949 | if (batch->gonlab[0] != '\0') { | ^ cmtzlib.c:2730:27: warning: ‘%74s’ directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] 2730 | sprintf(hdrrec,"SYMM %74s",symline); | ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from cmtzlib.c:24: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 80 and 86 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmtzlib.c:2824:45: warning: ‘%1X’ directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2824 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ cmtzlib.c:2824:20: note: directive argument in the range [0, 2147483647] 2824 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from cmtzlib.c:24: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 81 and 95 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmtzlib.c:2826:45: warning: ‘%1X’ directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2826 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ cmtzlib.c:2826:20: note: directive argument in the range [0, 2147483647] 2826 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from cmtzlib.c:24: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 81 and 95 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmtzlib.lo -MD -MP -MF .deps/cmtzlib.Tpo -c cmtzlib.c -o cmtzlib.o >/dev/null 2>&1 mv -f .deps/cmtzlib.Tpo .deps/cmtzlib.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_general.lo -MD -MP -MF .deps/ccp4_general.Tpo -c -o ccp4_general.lo ccp4_general.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_general.lo -MD -MP -MF .deps/ccp4_general.Tpo -c ccp4_general.c -fPIC -DPIC -o .libs/ccp4_general.o ccp4_general.c: In function ‘ccp4_banner’: ccp4_general.c:1407:81: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1407 | sprintf(l2, "\\//\\| gpp4 library version: %s, compiled: %s", GPP4_VERSION_NO,__DATE__); | ^~~~~~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_general.lo -MD -MP -MF .deps/ccp4_general.Tpo -c ccp4_general.c -o ccp4_general.o >/dev/null 2>&1 mv -f .deps/ccp4_general.Tpo .deps/ccp4_general.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_header.lo -MD -MP -MF .deps/cmap_header.Tpo -c -o cmap_header.lo cmap_header.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_header.lo -MD -MP -MF .deps/cmap_header.Tpo -c cmap_header.c -fPIC -DPIC -o .libs/cmap_header.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_header.lo -MD -MP -MF .deps/cmap_header.Tpo -c cmap_header.c -o cmap_header.o >/dev/null 2>&1 mv -f .deps/cmap_header.Tpo .deps/cmap_header.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT csymlib.lo -MD -MP -MF .deps/csymlib.Tpo -c -o csymlib.lo csymlib.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT csymlib.lo -MD -MP -MF .deps/csymlib.Tpo -c csymlib.c -fPIC -DPIC -o .libs/csymlib.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT csymlib.lo -MD -MP -MF .deps/csymlib.Tpo -c csymlib.c -o csymlib.o >/dev/null 2>&1 mv -f .deps/csymlib.Tpo .deps/csymlib.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_parser.lo -MD -MP -MF .deps/ccp4_parser.Tpo -c -o ccp4_parser.lo ccp4_parser.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_parser.lo -MD -MP -MF .deps/ccp4_parser.Tpo -c ccp4_parser.c -fPIC -DPIC -o .libs/ccp4_parser.o In file included from /usr/include/string.h:495, from ccp4_parser.c:33: In function ‘strncpy’, inlined from ‘ccp4_parse_delimiters’ at ccp4_parser.c:260:2: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4_parser.c: In function ‘ccp4_parse_delimiters’: ccp4_parser.c:252:16: note: length computed here 252 | ldelim = strlen(defdelim) + 1; | ^~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from ccp4_parser.c:33: In function ‘strncpy’, inlined from ‘ccp4_parse_delimiters’ at ccp4_parser.c:277:2: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4_parser.c: In function ‘ccp4_parse_delimiters’: ccp4_parser.c:269:20: note: length computed here 269 | lnulldelim = strlen(defnulldelim) + 1; | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from ccp4_parser.c:33: In function ‘strncpy’, inlined from ‘ccp4_parse_comments’ at ccp4_parser.c:332:2: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4_parser.c: In function ‘ccp4_parse_comments’: ccp4_parser.c:325:18: note: length computed here 325 | lcomment = strlen(def_comment_chars) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from ccp4_parser.c:33: In function ‘strncpy’, inlined from ‘ccp4_keymatch’ at ccp4_parser.c:1032:3: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4_parser.c: In function ‘ccp4_keymatch’: ccp4_parser.c:1021:10: note: length computed here 1021 | len1 = strlen(keyin1); | ^~~~~~~~~~~~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_parser.lo -MD -MP -MF .deps/ccp4_parser.Tpo -c ccp4_parser.c -o ccp4_parser.o >/dev/null 2>&1 mv -f .deps/ccp4_parser.Tpo .deps/ccp4_parser.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_labels.lo -MD -MP -MF .deps/cmap_labels.Tpo -c -o cmap_labels.lo cmap_labels.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_labels.lo -MD -MP -MF .deps/cmap_labels.Tpo -c cmap_labels.c -fPIC -DPIC -o .libs/cmap_labels.o In file included from /usr/include/string.h:495, from cmap_labels.c:20: In function ‘strncpy’, inlined from ‘write_maplabels’ at cmap_labels.c:64:5: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmap_labels.c: In function ‘write_maplabels’: cmap_labels.c:64:5: note: length computed here 64 | strncpy(buffer,mfile->labels.labels[i],strlen(mfile->labels.labels[i])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_labels.lo -MD -MP -MF .deps/cmap_labels.Tpo -c cmap_labels.c -o cmap_labels.o >/dev/null 2>&1 mv -f .deps/cmap_labels.Tpo .deps/cmap_labels.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cvecmat.lo -MD -MP -MF .deps/cvecmat.Tpo -c -o cvecmat.lo cvecmat.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cvecmat.lo -MD -MP -MF .deps/cvecmat.Tpo -c cvecmat.c -fPIC -DPIC -o .libs/cvecmat.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cvecmat.lo -MD -MP -MF .deps/cvecmat.Tpo -c cvecmat.c -o cvecmat.o >/dev/null 2>&1 mv -f .deps/cvecmat.Tpo .deps/cvecmat.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_program.lo -MD -MP -MF .deps/ccp4_program.Tpo -c -o ccp4_program.lo ccp4_program.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_program.lo -MD -MP -MF .deps/ccp4_program.Tpo -c ccp4_program.c -fPIC -DPIC -o .libs/ccp4_program.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_program.lo -MD -MP -MF .deps/ccp4_program.Tpo -c ccp4_program.c -o ccp4_program.o >/dev/null 2>&1 mv -f .deps/ccp4_program.Tpo .deps/ccp4_program.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_open.lo -MD -MP -MF .deps/cmap_open.Tpo -c -o cmap_open.lo cmap_open.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_open.lo -MD -MP -MF .deps/cmap_open.Tpo -c cmap_open.c -fPIC -DPIC -o .libs/cmap_open.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_open.lo -MD -MP -MF .deps/cmap_open.Tpo -c cmap_open.c -o cmap_open.o >/dev/null 2>&1 mv -f .deps/cmap_open.Tpo .deps/cmap_open.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_err.lo -MD -MP -MF .deps/library_err.Tpo -c -o library_err.lo library_err.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_err.lo -MD -MP -MF .deps/library_err.Tpo -c library_err.c -fPIC -DPIC -o .libs/library_err.o library_err.c: In function ‘CFile_Perror’: library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] 247 | if (msg == NULL || msg == '\0') colon = ""; | ^~ library_err.c:247:22: note: did you mean to dereference the pointer? 247 | if (msg == NULL || msg == '\0') colon = ""; | ^ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_err.lo -MD -MP -MF .deps/library_err.Tpo -c library_err.c -o library_err.o >/dev/null 2>&1 mv -f .deps/library_err.Tpo .deps/library_err.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_unitcell.lo -MD -MP -MF .deps/ccp4_unitcell.Tpo -c -o ccp4_unitcell.lo ccp4_unitcell.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_unitcell.lo -MD -MP -MF .deps/ccp4_unitcell.Tpo -c ccp4_unitcell.c -fPIC -DPIC -o .libs/ccp4_unitcell.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT ccp4_unitcell.lo -MD -MP -MF .deps/ccp4_unitcell.Tpo -c ccp4_unitcell.c -o ccp4_unitcell.o >/dev/null 2>&1 mv -f .deps/ccp4_unitcell.Tpo .deps/ccp4_unitcell.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_skew.lo -MD -MP -MF .deps/cmap_skew.Tpo -c -o cmap_skew.lo cmap_skew.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_skew.lo -MD -MP -MF .deps/cmap_skew.Tpo -c cmap_skew.c -fPIC -DPIC -o .libs/cmap_skew.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_skew.lo -MD -MP -MF .deps/cmap_skew.Tpo -c cmap_skew.c -o cmap_skew.o >/dev/null 2>&1 mv -f .deps/cmap_skew.Tpo .deps/cmap_skew.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_file.lo -MD -MP -MF .deps/library_file.Tpo -c -o library_file.lo library_file.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_file.lo -MD -MP -MF .deps/library_file.Tpo -c library_file.c -fPIC -DPIC -o .libs/library_file.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_file.lo -MD -MP -MF .deps/library_file.Tpo -c library_file.c -o library_file.o >/dev/null 2>&1 mv -f .deps/library_file.Tpo .deps/library_file.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_accessor.lo -MD -MP -MF .deps/cmap_accessor.Tpo -c -o cmap_accessor.lo cmap_accessor.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_accessor.lo -MD -MP -MF .deps/cmap_accessor.Tpo -c cmap_accessor.c -fPIC -DPIC -o .libs/cmap_accessor.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_accessor.lo -MD -MP -MF .deps/cmap_accessor.Tpo -c cmap_accessor.c -o cmap_accessor.o >/dev/null 2>&1 mv -f .deps/cmap_accessor.Tpo .deps/cmap_accessor.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_stats.lo -MD -MP -MF .deps/cmap_stats.Tpo -c -o cmap_stats.lo cmap_stats.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_stats.lo -MD -MP -MF .deps/cmap_stats.Tpo -c cmap_stats.c -fPIC -DPIC -o .libs/cmap_stats.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_stats.lo -MD -MP -MF .deps/cmap_stats.Tpo -c cmap_stats.c -o cmap_stats.o >/dev/null 2>&1 mv -f .deps/cmap_stats.Tpo .deps/cmap_stats.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_utils.lo -MD -MP -MF .deps/library_utils.Tpo -c -o library_utils.lo library_utils.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_utils.lo -MD -MP -MF .deps/library_utils.Tpo -c library_utils.c -fPIC -DPIC -o .libs/library_utils.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT library_utils.lo -MD -MP -MF .deps/library_utils.Tpo -c library_utils.c -o library_utils.o >/dev/null 2>&1 mv -f .deps/library_utils.Tpo .deps/library_utils.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_close.lo -MD -MP -MF .deps/cmap_close.Tpo -c -o cmap_close.lo cmap_close.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_close.lo -MD -MP -MF .deps/cmap_close.Tpo -c cmap_close.c -fPIC -DPIC -o .libs/cmap_close.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_close.lo -MD -MP -MF .deps/cmap_close.Tpo -c cmap_close.c -o cmap_close.o >/dev/null 2>&1 mv -f .deps/cmap_close.Tpo .deps/cmap_close.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_symop.lo -MD -MP -MF .deps/cmap_symop.Tpo -c -o cmap_symop.lo cmap_symop.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_symop.lo -MD -MP -MF .deps/cmap_symop.Tpo -c cmap_symop.c -fPIC -DPIC -o .libs/cmap_symop.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT cmap_symop.lo -MD -MP -MF .deps/cmap_symop.Tpo -c cmap_symop.c -o cmap_symop.o >/dev/null 2>&1 mv -f .deps/cmap_symop.Tpo .deps/cmap_symop.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT pack_c.lo -MD -MP -MF .deps/pack_c.Tpo -c -o pack_c.lo pack_c.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT pack_c.lo -MD -MP -MF .deps/pack_c.Tpo -c pack_c.c -fPIC -DPIC -o .libs/pack_c.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT pack_c.lo -MD -MP -MF .deps/pack_c.Tpo -c pack_c.c -o pack_c.o >/dev/null 2>&1 mv -f .deps/pack_c.Tpo .deps/pack_c.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT gpp4_open_symop_file.lo -MD -MP -MF .deps/gpp4_open_symop_file.Tpo -c -o gpp4_open_symop_file.lo gpp4_open_symop_file.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT gpp4_open_symop_file.lo -MD -MP -MF .deps/gpp4_open_symop_file.Tpo -c gpp4_open_symop_file.c -fPIC -DPIC -o .libs/gpp4_open_symop_file.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT gpp4_open_symop_file.lo -MD -MP -MF .deps/gpp4_open_symop_file.Tpo -c gpp4_open_symop_file.c -o gpp4_open_symop_file.o >/dev/null 2>&1 mv -f .deps/gpp4_open_symop_file.Tpo .deps/gpp4_open_symop_file.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libgpp4.la -rpath /usr/lib ccp4_array.lo cmap_data.lo cmtzlib.lo ccp4_general.lo cmap_header.lo csymlib.lo ccp4_parser.lo cmap_labels.lo cvecmat.lo ccp4_program.lo cmap_open.lo library_err.lo ccp4_unitcell.lo cmap_skew.lo library_file.lo cmap_accessor.lo cmap_stats.lo library_utils.lo cmap_close.lo cmap_symop.lo pack_c.lo gpp4_open_symop_file.lo -lm libtool: link: gcc -shared -fPIC -DPIC .libs/ccp4_array.o .libs/cmap_data.o .libs/cmtzlib.o .libs/ccp4_general.o .libs/cmap_header.o .libs/csymlib.o .libs/ccp4_parser.o .libs/cmap_labels.o .libs/cvecmat.o .libs/ccp4_program.o .libs/cmap_open.o .libs/library_err.o .libs/ccp4_unitcell.o .libs/cmap_skew.o .libs/library_file.o .libs/cmap_accessor.o .libs/cmap_stats.o .libs/library_utils.o .libs/cmap_close.o .libs/cmap_symop.o .libs/pack_c.o .libs/gpp4_open_symop_file.o -lm -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libgpp4.so.0 -o .libs/libgpp4.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libgpp4.so.0" && ln -s "libgpp4.so.0.0.0" "libgpp4.so.0") libtool: link: (cd ".libs" && rm -f "libgpp4.so" && ln -s "libgpp4.so.0.0.0" "libgpp4.so") libtool: link: ar cr .libs/libgpp4.a ccp4_array.o cmap_data.o cmtzlib.o ccp4_general.o cmap_header.o csymlib.o ccp4_parser.o cmap_labels.o cvecmat.o ccp4_program.o cmap_open.o library_err.o ccp4_unitcell.o cmap_skew.o library_file.o cmap_accessor.o cmap_stats.o library_utils.o cmap_close.o cmap_symop.o pack_c.o gpp4_open_symop_file.o libtool: link: ranlib .libs/libgpp4.a libtool: link: ( cd ".libs" && rm -f "libgpp4.la" && ln -s "../libgpp4.la" "libgpp4.la" ) make[2]: Leaving directory '/<>/src' Making all in test make[2]: Entering directory '/<>/test' gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT load_syminfo.o -MD -MP -MF .deps/load_syminfo.Tpo -c -o load_syminfo.o load_syminfo.c mv -f .deps/load_syminfo.Tpo .deps/load_syminfo.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ../src/libgpp4.la -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -o load_syminfo load_syminfo.o -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/load_syminfo load_syminfo.o ../src/.libs/libgpp4.so -lm gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT mtzhdr.o -MD -MP -MF .deps/mtzhdr.Tpo -c -o mtzhdr.o mtzhdr.c mtzhdr.c: In function ‘mtzhdrout’: mtzhdr.c:103:31: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 103 | sprintf (fmt, " %%-%ds", max); | ^~ mtzhdr.c:103:21: note: directive argument in the range [1, 2147483647] 103 | sprintf (fmt, " %%-%ds", max); | ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from ../src/ccp4_sysdep.h:136, from ../src/ccp4_types.h:30, from ../src/ccp4_utils.h:30, from ../src/cmtzlib.h:106, from mtzhdr.c:24: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 20 bytes into a destination of size 16 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv -f .deps/mtzhdr.Tpo .deps/mtzhdr.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ../src/libgpp4.la -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -o mtzhdr mtzhdr.o -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mtzhdr mtzhdr.o ../src/.libs/libgpp4.so -lm gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT checkarch.o -MD -MP -MF .deps/checkarch.Tpo -c -o checkarch.o checkarch.c mv -f .deps/checkarch.Tpo .deps/checkarch.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ../src/libgpp4.la -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -o checkarch checkarch.o -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/checkarch checkarch.o ../src/.libs/libgpp4.so -lm gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT maphdr.o -MD -MP -MF .deps/maphdr.Tpo -c -o maphdr.o maphdr.c mv -f .deps/maphdr.Tpo .deps/maphdr.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ../src/libgpp4.la -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -o maphdr maphdr.o -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/maphdr maphdr.o ../src/.libs/libgpp4.so -lm gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT mtzcols.o -MD -MP -MF .deps/mtzcols.Tpo -c -o mtzcols.o mtzcols.c mv -f .deps/mtzcols.Tpo .deps/mtzcols.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security ../src/libgpp4.la -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -o mtzcols mtzcols.o -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mtzcols mtzcols.o ../src/.libs/libgpp4.so -lm make[2]: Leaving directory '/<>/test' Making all in data make[2]: Entering directory '/<>/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/data' Making all in src_f make[2]: Entering directory '/<>/src_f' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_diskio_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_diskio_f.Tpo -c -o libgpp4f_la-ccp4_diskio_f.lo `test -f 'ccp4_diskio_f.c' || echo './'`ccp4_diskio_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_diskio_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_diskio_f.Tpo -c ccp4_diskio_f.c -fPIC -DPIC -o .libs/libgpp4f_la-ccp4_diskio_f.o In file included from /usr/include/string.h:495, from ccp4_diskio_f.c:59: In function ‘strncpy’, inlined from ‘qqinq_’ at ccp4_diskio_f.c:719:5: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../src/ccp4_utils.h:30, from ccp4_diskio_f.c:60: ccp4_diskio_f.c: In function ‘qqinq_’: ccp4_diskio_f.c:720:25: note: length computed here 720 | MIN(strlen(_ioChannels[*istrm]->iobj->name), ../src/ccp4_types.h:110:22: note: in definition of macro ‘MIN’ 110 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_diskio_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_diskio_f.Tpo -c ccp4_diskio_f.c -o libgpp4f_la-ccp4_diskio_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-ccp4_diskio_f.Tpo .deps/libgpp4f_la-ccp4_diskio_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_parser_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_parser_f.Tpo -c -o libgpp4f_la-ccp4_parser_f.lo `test -f 'ccp4_parser_f.c' || echo './'`ccp4_parser_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_parser_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_parser_f.Tpo -c ccp4_parser_f.c -fPIC -DPIC -o .libs/libgpp4f_la-ccp4_parser_f.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_parser_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_parser_f.Tpo -c ccp4_parser_f.c -o libgpp4f_la-ccp4_parser_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-ccp4_parser_f.Tpo .deps/libgpp4f_la-ccp4_parser_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmaplib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmaplib_f.Tpo -c -o libgpp4f_la-cmaplib_f.lo `test -f 'cmaplib_f.c' || echo './'`cmaplib_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmaplib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmaplib_f.Tpo -c cmaplib_f.c -fPIC -DPIC -o .libs/libgpp4f_la-cmaplib_f.o In file included from /usr/include/string.h:495, from cmaplib_f.c:44: In function ‘strncpy’, inlined from ‘mrdhds_’ at cmaplib_f.c:705:3: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../src/ccp4_utils.h:30, from ../src/cmaplib.h:53, from ../src/cmaplib_f.h:31, from cmaplib_f.c:47: cmaplib_f.c: In function ‘mrdhds_’: cmaplib_f.c:705:32: note: length computed here 705 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); ../src/ccp4_types.h:110:22: note: in definition of macro ‘MIN’ 110 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ In file included from /usr/include/string.h:495, from cmaplib_f.c:44: In function ‘strncpy’, inlined from ‘ccp4_map_read_open_header_’ at cmaplib_f.c:909:3: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../src/ccp4_utils.h:30, from ../src/cmaplib.h:53, from ../src/cmaplib_f.h:31, from cmaplib_f.c:47: cmaplib_f.c: In function ‘ccp4_map_read_open_header_’: cmaplib_f.c:909:32: note: length computed here 909 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); ../src/ccp4_types.h:110:22: note: in definition of macro ‘MIN’ 110 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ In file included from /usr/include/string.h:495, from cmaplib_f.c:44: In function ‘strncpy’, inlined from ‘mwfnam_’ at cmaplib_f.c:2106:3: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../src/ccp4_utils.h:30, from ../src/cmaplib.h:53, from ../src/cmaplib_f.h:31, from cmaplib_f.c:47: cmaplib_f.c: In function ‘mwfnam_’: cmaplib_f.c:2107:8: note: length computed here 2107 | MIN(strlen(ioArray[last_Write]->logname), ../src/ccp4_types.h:110:22: note: in definition of macro ‘MIN’ 110 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ In file included from /usr/include/string.h:495, from cmaplib_f.c:44: In function ‘strncpy’, inlined from ‘mrfnam_’ at cmaplib_f.c:2134:3: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../src/ccp4_utils.h:30, from ../src/cmaplib.h:53, from ../src/cmaplib_f.h:31, from cmaplib_f.c:47: cmaplib_f.c: In function ‘mrfnam_’: cmaplib_f.c:2135:8: note: length computed here 2135 | MIN(strlen(ioArray[last_Read]->logname), ../src/ccp4_types.h:110:22: note: in definition of macro ‘MIN’ 110 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmaplib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmaplib_f.Tpo -c cmaplib_f.c -o libgpp4f_la-cmaplib_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-cmaplib_f.Tpo .deps/libgpp4f_la-cmaplib_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-csymlib_f.lo -MD -MP -MF .deps/libgpp4f_la-csymlib_f.Tpo -c -o libgpp4f_la-csymlib_f.lo `test -f 'csymlib_f.c' || echo './'`csymlib_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-csymlib_f.lo -MD -MP -MF .deps/libgpp4f_la-csymlib_f.Tpo -c csymlib_f.c -fPIC -DPIC -o .libs/libgpp4f_la-csymlib_f.o csymlib_f.c: In function ‘ccp4spg_f_equal_ops_order_’: csymlib_f.c:950:9: warning: implicit declaration of function ‘ccp4_spgrp_equal_order’; did you mean ‘ccp4_spgrp_equal’? [-Wimplicit-function-declaration] 950 | ret = ccp4_spgrp_equal_order(*msym1, op1, *msym2, op2); | ^~~~~~~~~~~~~~~~~~~~~~ | ccp4_spgrp_equal libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-csymlib_f.lo -MD -MP -MF .deps/libgpp4f_la-csymlib_f.Tpo -c csymlib_f.c -o libgpp4f_la-csymlib_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-csymlib_f.Tpo .deps/libgpp4f_la-csymlib_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_general_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_general_f.Tpo -c -o libgpp4f_la-ccp4_general_f.lo `test -f 'ccp4_general_f.c' || echo './'`ccp4_general_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_general_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_general_f.Tpo -c ccp4_general_f.c -fPIC -DPIC -o .libs/libgpp4f_la-ccp4_general_f.o In file included from ccp4_general_f.c:31: ccp4_general_f.c: In function ‘ccpfyp_’: ccp4_general_f.c:85:23: warning: implicit declaration of function ‘outbuf_’ [-Wimplicit-function-declaration] 85 | FORTRAN_CALL(OUTBUF,outbuf,(),(),()); | ^~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ ccp4_general_f.c:111:5: warning: implicit declaration of function ‘_gfortran_getarg_i4’; did you mean ‘_gfortran_getarg’? [-Wimplicit-function-declaration] 111 | _gfortran_getarg_i4(&i,arg,arg_len); | ^~~~~~~~~~~~~~~~~~~ | _gfortran_getarg In file included from ccp4_general_f.c:31: ccp4_general_f.c:142:29: warning: implicit declaration of function ‘ccp4h_init_’ [-Wimplicit-function-declaration] 142 | FORTRAN_CALL (CCP4H_INIT, ccp4h_init, (), (), ()); | ^~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ ccp4_general_f.c: In function ‘ccperr_’: ccp4_general_f.c:215:37: warning: implicit declaration of function ‘ccp4_fflush_stdout_’ [-Wimplicit-function-declaration] 215 | FORTRAN_CALL (CCP4_FFLUSH_STDOUT, ccp4_fflush_stdout, (), (), ()); | ^~~~~~~~~~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ ccp4_general_f.c:219:38: warning: implicit declaration of function ‘ccp4h_summary_beg_’ [-Wimplicit-function-declaration] 219 | FORTRAN_CALL (CCP4H_SUMMARY_BEG, ccp4h_summary_beg, (), (), ()); | ^~~~~~~~~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ ccp4_general_f.c:227:38: warning: implicit declaration of function ‘ccp4h_summary_end_’ [-Wimplicit-function-declaration] 227 | FORTRAN_CALL (CCP4H_SUMMARY_END, ccp4h_summary_end, (), (), ()); | ^~~~~~~~~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ ccp4_general_f.c: In function ‘ccpvrs_’: ccp4_general_f.c:373:32: warning: implicit declaration of function ‘ccp4h_pre_beg_’ [-Wimplicit-function-declaration] 373 | FORTRAN_CALL (CCP4H_PRE_BEG, ccp4h_pre_beg, (), (), ()); | ^~~~~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_general_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_general_f.Tpo -c ccp4_general_f.c -o libgpp4f_la-ccp4_general_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-ccp4_general_f.Tpo .deps/libgpp4f_la-ccp4_general_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_unitcell_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_unitcell_f.Tpo -c -o libgpp4f_la-ccp4_unitcell_f.lo `test -f 'ccp4_unitcell_f.c' || echo './'`ccp4_unitcell_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_unitcell_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_unitcell_f.Tpo -c ccp4_unitcell_f.c -fPIC -DPIC -o .libs/libgpp4f_la-ccp4_unitcell_f.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-ccp4_unitcell_f.lo -MD -MP -MF .deps/libgpp4f_la-ccp4_unitcell_f.Tpo -c ccp4_unitcell_f.c -o libgpp4f_la-ccp4_unitcell_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-ccp4_unitcell_f.Tpo .deps/libgpp4f_la-ccp4_unitcell_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmtzlib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmtzlib_f.Tpo -c -o libgpp4f_la-cmtzlib_f.lo `test -f 'cmtzlib_f.c' || echo './'`cmtzlib_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmtzlib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmtzlib_f.Tpo -c cmtzlib_f.c -fPIC -DPIC -o .libs/libgpp4f_la-cmtzlib_f.o In file included from cmtzlib_f.c:70: cmtzlib_f.c: In function ‘mtzini_’: cmtzlib_f.c:151:33: warning: implicit declaration of function ‘ccp4h_init_lib_’ [-Wimplicit-function-declaration] 151 | FORTRAN_CALL (CCP4H_INIT_LIB, ccp4h_init_lib, (&ihtml,&isumm), (&ihtml,&isumm), (&ihtml,&isumm)); | ^~~~~~~~~~~~~~ ../src/ccp4_fortran.h:194:5: note: in definition of macro ‘FORTRAN_CALL’ 194 | name##_ p_sun | ^~~~ libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-cmtzlib_f.lo -MD -MP -MF .deps/libgpp4f_la-cmtzlib_f.Tpo -c cmtzlib_f.c -o libgpp4f_la-cmtzlib_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-cmtzlib_f.Tpo .deps/libgpp4f_la-cmtzlib_f.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" -DPACKAGE_STRING=\"gpp4\ 1.3.1\" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-library_f.lo -MD -MP -MF .deps/libgpp4f_la-library_f.Tpo -c -o libgpp4f_la-library_f.lo `test -f 'library_f.c' || echo './'`library_f.c libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-library_f.lo -MD -MP -MF .deps/libgpp4f_la-library_f.Tpo -c library_f.c -fPIC -DPIC -o .libs/libgpp4f_la-library_f.o libtool: compile: gcc -DPACKAGE_NAME=\"gpp4\" -DPACKAGE_TARNAME=\"gpp4\" -DPACKAGE_VERSION=\"1.3.1\" "-DPACKAGE_STRING=\"gpp4 1.3.1\"" -DPACKAGE_BUGREPORT=\"mok@bioxray.dk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"gpp4\" -DVERSION=\"1.3.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_WCHAR_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_VPRINTF=1 -DHAVE_STRNLEN=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_PUTENV=1 -DHAVE_RINT=1 -DHAVE_SETENV=1 -DHAVE_SQRT=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DGPP4_PREFIX=\"/usr\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../src -DGFORTRAN -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -MT libgpp4f_la-library_f.lo -MD -MP -MF .deps/libgpp4f_la-library_f.Tpo -c library_f.c -o libgpp4f_la-library_f.o >/dev/null 2>&1 mv -f .deps/libgpp4f_la-library_f.Tpo .deps/libgpp4f_la-library_f.Plo /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o ccplib.lo ccplib.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ccplib.f -fPIC -o .libs/ccplib.o ccplib.f:1040:72: 1040 | 10 IARR1(J)=IARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) ccplib.f:1065:72: 1065 | 10 ARR1(J)=ARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) ccplib.f:1835:72: 1835 | 10 ARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) ccplib.f:1857:72: 1857 | 10 IARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) ccplib.f:1880:72: 1880 | 10 ARR1(J)=0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ccplib.f -o ccplib.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o fftlib.lo fftlib.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c fftlib.f -fPIC -o .libs/fftlib.o fftlib.f:1253:72: 1253 | IF (K-I) 90,130,100 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c fftlib.f -o fftlib.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o modlib.lo modlib.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c modlib.f -fPIC -o .libs/modlib.o modlib.f:256:72: 256 | DO 100 I = 1, P | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) modlib.f:258:72: 258 | DO 100 K = 1, R | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) modlib.f:259:72: 259 | DO 100 J = 1, Q | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) modlib.f:263:72: 263 | 100 D(I,L) = D(I,L) + A(I,J) * B(J,K) * C(K,L) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) modlib.f:913:18: 910 | DO 20 J = 2,M | 2 ...... 913 | A(I,J) = A(J,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:915:16: 910 | DO 20 J = 2,M | 2 ...... 915 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:915:25: 910 | DO 20 J = 2,M | 2 ...... 915 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:968:20: 967 | DO 120 I = 2,M | 2 968 | H = ALPHA(I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:969:16: 967 | DO 120 I = 2,M | 2 968 | H = ALPHA(I) 969 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:969:25: 967 | DO 120 I = 2,M | 2 968 | H = ALPHA(I) 969 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) modlib.f:970:14: 967 | DO 120 I = 2,M | 2 ...... 970 | A(I,I) = H | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c modlib.f -o modlib.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o parser.lo parser.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c parser.f -fPIC -o .libs/parser.o libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c parser.f -o parser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o rwbrook.lo rwbrook.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c rwbrook.f -fPIC -o .libs/rwbrook.o rwbrook.f:1628:72: 1628 | DO 10 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) rwbrook.f:1646:72: 1646 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) rwbrook.f:2309:72: 2309 | DO 10 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) rwbrook.f:2315:72: 2315 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) rwbrook.f:2369:72: 2369 | 1 CELLD(I) = CELL(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) rwbrook.f:2405:72: 2405 | 1 RCEL(I) = CELLAS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) rwbrook.f:2812:72: 2812 | DO 40 J = 1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c rwbrook.f -o rwbrook.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o libhtml.lo libhtml.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c libhtml.f -fPIC -o .libs/libhtml.o libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c libhtml.f -o libhtml.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o keyparse.lo keyparse.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c keyparse.f -fPIC -o .libs/keyparse.o libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c keyparse.f -o keyparse.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o unix.lo unix.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c unix.f -fPIC -o .libs/unix.o libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c unix.f -o unix.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o dna_output.lo dna_output.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dna_output.f -fPIC -o .libs/dna_output.o libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dna_output.f -o dna_output.o >/dev/null 2>&1 /bin/bash ../libtool --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o pack_f.lo pack_f.f libtool: compile: f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c pack_f.f -fPIC -o .libs/pack_f.o pack_f.f:108:28: 44 | call pack_wordimage_f(data, x, y, filnarray) | 2 ...... 108 | call pack_wordimage_f(data, x, y, filnarray) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/INTEGER(2)). pack_f.f:140:30: 76 | call v2pack_wordimage_f(data, x, y, filnarray) | 2 ...... 140 | call v2pack_wordimage_f(data, x, y, filnarray) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/INTEGER(2)). make[2]: *** [Makefile:561: pack_f.lo] Error 1 make[2]: Leaving directory '/<>/src_f' make[1]: *** [Makefile:471: all-recursive] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:25: build-arch-stamp] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200413-0403 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 13872 Build-Time: 136 Distribution: focal Fail-Stage: build Host Architecture: armhf Install-Time: 19 Job: gpp4_1.3.1-0ubuntu10.dsc Machine Architecture: arm64 Package: gpp4 Package-Time: 157 Source-Version: 1.3.1-0ubuntu10 Space: 13872 Status: attempted Version: 1.3.1-0ubuntu10 -------------------------------------------------------------------------------- Finished at 20200413-0403 Build needed 00:02:37, 13872k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-19010207 Scanning for processes to kill in build PACKAGEBUILD-19010207