https://launchpad.net/ubuntu/+archive/test-rebuild-20200728-groovy/+build/19694711 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-018 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:15:38 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Aug 13:57:00 ntpdate[1854]: adjust time server 10.211.37.1 offset -0.000056 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19694711 --image-type chroot /home/buildd/filecache-default/c742ba36b312cb05af21d0da5b96b5d4203afb06 Creating target for build PACKAGEBUILD-19694711 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19694711 Starting target for build PACKAGEBUILD-19694711 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19694711 'deb http://ftpmaster.internal/ubuntu groovy main universe' Overriding sources.list in build-PACKAGEBUILD-19694711 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19694711 Updating target for build PACKAGEBUILD-19694711 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x Packages [926 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main Translation-en [510 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/universe s390x Packages [8429 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5251 kB] Fetched 15.4 MB in 4s (4049 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files bsdutils build-essential ca-certificates libblkid1 liblzma5 libmount1 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libuuid1 mount util-linux xz-utils 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2115 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main s390x base-files s390x 11ubuntu10 [60.2 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x bsdutils s390x 1:2.35.2-9ubuntu1 [82.5 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x libselinux1 s390x 3.1-2 [65.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main s390x util-linux s390x 2.35.2-9ubuntu1 [1010 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x mount s390x 2.35.2-9ubuntu1 [113 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main s390x libblkid1 s390x 2.35.2-9ubuntu1 [124 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main s390x liblzma5 s390x 5.2.4-1ubuntu1 [90.5 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x libmount1 s390x 2.35.2-9ubuntu1 [135 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x libsemanage-common all 3.1-1 [10.2 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x libsemanage1 s390x 3.1-1 [80.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x libsmartcols1 s390x 2.35.2-9ubuntu1 [89.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x libuuid1 s390x 2.35.2-9ubuntu1 [22.0 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x ca-certificates all 20200601 [147 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x xz-utils s390x 5.2.4-1ubuntu1 [80.5 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x build-essential s390x 12.8ubuntu3 [4636 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 2115 kB in 0s (8299 kB/s) (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu10_s390x.deb ... Unpacking base-files (11ubuntu10) over (11ubuntu9) ... Setting up base-files (11ubuntu10) ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.35.2-9ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.35.2-9ubuntu1) over (1:2.35.2-7ubuntu3) ... Setting up bsdutils (1:2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-2_s390x.deb ... Unpacking libselinux1:s390x (3.1-2) over (3.0-1build2) ... Setting up libselinux1:s390x (3.1-2) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../util-linux_2.35.2-9ubuntu1_s390x.deb ... Unpacking util-linux (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Setting up util-linux (2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../mount_2.35.2-9ubuntu1_s390x.deb ... Unpacking mount (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Preparing to unpack .../libblkid1_2.35.2-9ubuntu1_s390x.deb ... Unpacking libblkid1:s390x (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Setting up libblkid1:s390x (2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1ubuntu1_s390x.deb ... Unpacking liblzma5:s390x (5.2.4-1ubuntu1) over (5.2.4-1) ... Setting up liblzma5:s390x (5.2.4-1ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libmount1_2.35.2-9ubuntu1_s390x.deb ... Unpacking libmount1:s390x (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Setting up libmount1:s390x (2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1_all.deb ... Unpacking libsemanage-common (3.1-1) over (3.0-1build2) ... Setting up libsemanage-common (3.1-1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1_s390x.deb ... Unpacking libsemanage1:s390x (3.1-1) over (3.0-1build2) ... Setting up libsemanage1:s390x (3.1-1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.35.2-9ubuntu1_s390x.deb ... Unpacking libsmartcols1:s390x (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Setting up libsmartcols1:s390x (2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libuuid1_2.35.2-9ubuntu1_s390x.deb ... Unpacking libuuid1:s390x (2.35.2-9ubuntu1) over (2.35.2-7ubuntu3) ... Setting up libuuid1:s390x (2.35.2-9ubuntu1) ... (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../ca-certificates_20200601_all.deb ... Unpacking ca-certificates (20200601) over (20190110ubuntu2) ... Preparing to unpack .../xz-utils_5.2.4-1ubuntu1_s390x.deb ... Unpacking xz-utils (5.2.4-1ubuntu1) over (5.2.4-1) ... Preparing to unpack .../build-essential_12.8ubuntu3_s390x.deb ... Unpacking build-essential (12.8ubuntu3) over (12.8ubuntu1) ... Setting up ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 13 added, 14 removed; done. Setting up xz-utils (5.2.4-1ubuntu1) ... Setting up mount (2.35.2-9ubuntu1) ... Setting up build-essential (12.8ubuntu3) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19694711 s390x groovy -c chroot:build-PACKAGEBUILD-19694711 --arch=s390x --dist=groovy --nolog libsmithwaterman_0.0+git20160702.2610e25-8.dsc Initiating build PACKAGEBUILD-19694711 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:15:38 UTC 2020 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-018.buildd +==============================================================================+ | libsmithwaterman 0.0+git20160702.2610e25-8 (s390x) 03 Aug 2020 13:57 | +==============================================================================+ Package: libsmithwaterman Version: 0.0+git20160702.2610e25-8 Source Version: 0.0+git20160702.2610e25-8 Distribution: groovy Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/libsmithwaterman-49m_DT/libsmithwaterman-0.0+git20160702.2610e25' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-49m_DT' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19694711/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libsmithwaterman_0.0+git20160702.2610e25-8.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sN88HG/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-sN88HG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sN88HG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sN88HG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sN88HG/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-sN88HG/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sN88HG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12572 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), d-shlibs, libdisorder-dev Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, libdisorder-dev dpkg-deb: building package 'sbuild-build-depends-libsmithwaterman-dummy' in '/<>/resolver-hwDJH3/apt_archive/sbuild-build-depends-libsmithwaterman-dummy.deb'. Ign:1 copy:/<>/resolver-hwDJH3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hwDJH3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hwDJH3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hwDJH3/apt_archive ./ Sources [236 B] Get:5 copy:/<>/resolver-hwDJH3/apt_archive ./ Packages [552 B] Fetched 2907 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libsmithwaterman build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libdisorder-dev libdisorder0 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-libsmithwaterman-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 16.7 MB of archives. After this operation, 68.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hwDJH3/apt_archive ./ sbuild-build-depends-libsmithwaterman-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x bsdextrautils s390x 2.35.2-9ubuntu1 [75.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x libpipeline1 s390x 1.5.2-2build1 [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic-mgc s390x 1:5.38-5 [219 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic1 s390x 1:5.38-5 [72.9 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x file s390x 1:5.38-5 [23.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x libelf1 s390x 0.180-0ubuntu1 [47.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x libglib2.0-0 s390x 2.64.4-1 [1181 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x libicu66 s390x 66.1-2ubuntu3 [8260 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x libxml2 s390x 2.9.10+dfsg-5 [659 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x m4 s390x 1.4.18-4 [196 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x autoconf all 2.69-11.1 [321 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main s390x automake all 1:1.16.2-3ubuntu1 [548 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/universe s390x d-shlibs all 0.93 [9712 B] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x libdebhelper-perl all 13.2ubuntu1 [64.2 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x dwz s390x 0.13-5 [146 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main s390x po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x debhelper all 13.2ubuntu1 [878 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/universe s390x libdisorder0 s390x 0.0.2+git20130809.8062ee1-1 [4364 B] Get:36 http://ftpmaster.internal/ubuntu groovy/universe s390x libdisorder-dev s390x 0.0.2+git20130809.8062ee1-1 [3848 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.7 MB in 2s (9869 kB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12572 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.35.2-9ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.35.2-9ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.2-2build1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_s390x.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../06-libmagic1_1%3a5.38-5_s390x.deb ... Unpacking libmagic1:s390x (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.38-5_s390x.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../08-libelf1_0.180-0ubuntu1_s390x.deb ... Unpacking libelf1:s390x (0.180-0ubuntu1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../09-libglib2.0-0_2.64.4-1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.64.4-1) ... Selecting previously unselected package libicu66:s390x. Preparing to unpack .../10-libicu66_66.1-2ubuntu3_s390x.deb ... Unpacking libicu66:s390x (66.1-2ubuntu3) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../11-libxml2_2.9.10+dfsg-5_s390x.deb ... Unpacking libxml2:s390x (2.9.10+dfsg-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.19.8.1-10build1_s390x.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../13-libsigsegv2_2.12-2build1_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2build1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-4_s390x.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.2-3ubuntu1_all.deb ... Unpacking automake (1:1.16.2-3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../19-d-shlibs_0.93_all.deb ... Unpacking d-shlibs (0.93) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../22-libdebhelper-perl_13.2ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.2ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.9.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.9.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.13-5_s390x.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../28-libcroco3_0.6.13-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-10build1_s390x.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. 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Preparing to unpack .../35-sbuild-build-depends-libsmithwaterman-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-libsmithwaterman-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.2-2build1) ... Setting up libdisorder0:s390x (0.0.2+git20130809.8062ee1-1) ... Setting up bsdextrautils (2.35.2-9ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.64.4-1) ... No schema files found: doing nothing. Setting up libicu66:s390x (66.1-2ubuntu3) ... Setting up libdebhelper-perl (13.2ubuntu1) ... Setting up libmagic1:s390x (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up d-shlibs (0.93) ... Setting up libdisorder-dev:s390x (0.0.2+git20130809.8062ee1-1) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:s390x (0.180-0ubuntu1) ... Setting up libxml2:s390x (2.9.10+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (13.2ubuntu1) ... Setting up sbuild-build-depends-libsmithwaterman-dummy (0.invalid.0) ... Setting up dh-autoreconf (19) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic s390x (s390x) Toolchain package versions: binutils_2.35-1ubuntu1 dpkg-dev_1.19.7ubuntu4 g++-10_10.2.0-3ubuntu1 gcc-10_10.2.0-3ubuntu1 libc6-dev_2.31-0ubuntu10 libstdc++-10-dev_10.2.0-3ubuntu1 libstdc++6_10.2.0-3ubuntu1 linux-libc-dev_5.4.0-42.46 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.7 autoconf_2.69-11.1 automake_1:1.16.2-3ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu10 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35-1ubuntu1 binutils-common_2.35-1ubuntu1 binutils-s390x-linux-gnu_2.35-1ubuntu1 bsdextrautils_2.35.2-9ubuntu1 bsdutils_1:2.35.2-9ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.30-3ubuntu3 cpp_4:10.1.0-1ubuntu1 cpp-10_10.2.0-3ubuntu1 d-shlibs_0.93 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3build1 dpkg_1.19.7ubuntu4 dpkg-dev_1.19.7ubuntu4 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:10.1.0-1ubuntu1 g++-10_10.2.0-3ubuntu1 gcc_4:10.1.0-1ubuntu1 gcc-10_10.2.0-3ubuntu1 gcc-10-base_10.2.0-3ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu6 libapt-pkg6.0_2.1.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-3ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-3ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.35-1ubuntu1 libblkid1_2.35.2-9ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.31-0ubuntu10 libc-dev-bin_2.31-0ubuntu10 libc6_2.31-0ubuntu10 libc6-dev_2.31-0ubuntu10 libcap-ng0_0.7.9-2.2 libcap2_1:2.36-1 libcc1-0_10.2.0-3ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu3 libctf-nobfd0_2.35-1ubuntu1 libctf0_2.35-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.2ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.7ubuntu4 libelf1_0.180-0ubuntu1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-3ubuntu1 libgcc-s1_10.2.0-3ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.13-4ubuntu4 libgomp1_10.2.0-3ubuntu1 libgpg-error0_1.38-2 libhogweed6_3.6-2 libicu66_66.1-2ubuntu3 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10.2.0-3ubuntu1 libjson-c4_0.13.1+dfsg-9 libkmod2_27+20200310-2ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-9ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1build1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu5 libpam-modules-bin_1.3.1-5ubuntu5 libpam-runtime_1.3.1-5ubuntu5 libpam0g_1.3.1-5ubuntu5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-5ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.35.2-9ubuntu1 libsqlite3-0_3.32.3-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu3 libstdc++-10-dev_10.2.0-3ubuntu1 libstdc++6_10.2.0-3ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.6-3ubuntu3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-3ubuntu1 libuchardet0_0.0.7-1 libudev1_245.6-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.35.2-9ubuntu1 libxml2_2.9.10+dfsg-5 libzstd1_1.4.5+dfsg-3 linux-libc-dev_5.4.0-42.46 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-9ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libsmithwaterman-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.12+nmu1 systemd_245.6-3ubuntu3 systemd-sysv_245.6-3ubuntu3 systemd-timesyncd_245.6-3ubuntu3 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.35.2-9ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri May 22 18:10:27 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libsmithwaterman_0.0+git20160702.2610e25-8.dsc dpkg-source: info: extracting libsmithwaterman in libsmithwaterman-0.0+git20160702.2610e25 dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19694711 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19694711 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19694711 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libsmithwaterman dpkg-buildpackage: info: source version 0.0+git20160702.2610e25-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure -a -O--no-parallel ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 11515: AX_CXXFLAGS: command not found checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libsmithwaterman.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a -O--no-parallel make -j1 make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make all-am make[2]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o smithwaterman.o smithwaterman.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-BandedSmithWaterman.lo `test -f 'BandedSmithWaterman.cpp' || echo './'`BandedSmithWaterman.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-BandedSmithWaterman.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -o libsmithwaterman_la-BandedSmithWaterman.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-IndelAllele.lo `test -f 'IndelAllele.cpp' || echo './'`IndelAllele.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-IndelAllele.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -o libsmithwaterman_la-IndelAllele.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-LeftAlign.lo `test -f 'LeftAlign.cpp' || echo './'`LeftAlign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-LeftAlign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -o libsmithwaterman_la-LeftAlign.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-Repeats.lo `test -f 'Repeats.cpp' || echo './'`Repeats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-Repeats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -o libsmithwaterman_la-Repeats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-SmithWatermanGotoh.lo `test -f 'SmithWatermanGotoh.cpp' || echo './'`SmithWatermanGotoh.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-SmithWatermanGotoh.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -o libsmithwaterman_la-SmithWatermanGotoh.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libsmithwaterman.la -rpath /usr/lib/s390x-linux-gnu libsmithwaterman_la-BandedSmithWaterman.lo libsmithwaterman_la-IndelAllele.lo libsmithwaterman_la-LeftAlign.lo libsmithwaterman_la-Repeats.lo libsmithwaterman_la-SmithWatermanGotoh.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/10/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/10/crtbeginS.o .libs/libsmithwaterman_la-BandedSmithWaterman.o .libs/libsmithwaterman_la-IndelAllele.o .libs/libsmithwaterman_la-LeftAlign.o .libs/libsmithwaterman_la-Repeats.o .libs/libsmithwaterman_la-SmithWatermanGotoh.o -L/usr/lib/gcc/s390x-linux-gnu/10 -L/usr/lib/gcc/s390x-linux-gnu/10/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/10/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/10/crtendS.o /usr/lib/gcc/s390x-linux-gnu/10/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsmithwaterman.so.0 -o .libs/libsmithwaterman.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so.0" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so.0") libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so") libtool: link: ar cr .libs/libsmithwaterman.a libsmithwaterman_la-BandedSmithWaterman.o libsmithwaterman_la-IndelAllele.o libsmithwaterman_la-LeftAlign.o libsmithwaterman_la-Repeats.o libsmithwaterman_la-SmithWatermanGotoh.o libtool: link: ranlib .libs/libsmithwaterman.a libtool: link: ( cd ".libs" && rm -f "libsmithwaterman.la" && ln -s "../libsmithwaterman.la" "libsmithwaterman.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o smithwaterman smithwaterman.o libsmithwaterman.la -ldisorder libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/smithwaterman smithwaterman.o ./.libs/libsmithwaterman.so -ldisorder make[2]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_auto_test -a -O--no-parallel make -j1 check VERBOSE=1 make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel dh_auto_install -a -O--no-parallel make -j1 install DESTDIR=/<>/libsmithwaterman-0.0\+git20160702.2610e25/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[2]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsmithwaterman.la '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsmithwaterman.so.0.0.0 /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 libtool: install: (cd /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so.0 || { rm -f libsmithwaterman.so.0 && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so.0; }; }) libtool: install: (cd /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so || { rm -f libsmithwaterman.so && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so; }; }) libtool: install: /usr/bin/install -c .libs/libsmithwaterman.lai /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.la libtool: install: /usr/bin/install -c .libs/libsmithwaterman.a /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: install: chmod 644 /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: install: ranlib /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c smithwaterman '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' libtool: warning: 'libsmithwaterman.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/smithwaterman /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin/smithwaterman /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /usr/bin/install -c -m 644 BandedSmithWaterman.h IndelAllele.h LeftAlign.h Mosaik.h Repeats.h SmithWatermanGotoh.h convert.h '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsmithwaterman.pc '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' make[2]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' debian/rules override_dh_install make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/s390x-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu mv /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu mv /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu PKGDEV=libsmithwaterman-dev PKGSHL=libsmithwaterman0 install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu/pkgconfig make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installexamples -a -O--no-parallel dh_installman -a -O--no-parallel dh_installinit -a -O--no-parallel dh_installsystemduser -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_missing: warning: usr/lib/s390x-linux-gnu/libsmithwaterman.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libsmithwaterman-dev (0), libsmithwaterman0 (0), smithwaterman (1) * dh_installdocs: libsmithwaterman-dev (0), libsmithwaterman0 (0), smithwaterman (2) * dh_installexamples: libsmithwaterman-dev (0), libsmithwaterman0 (0), smithwaterman (1) * dh_installman: libsmithwaterman-dev (0), libsmithwaterman0 (1), smithwaterman (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "s390x-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libsmithwaterman0/DEBIAN/symbols doesn't match completely debian/libsmithwaterman0.symbols --- debian/libsmithwaterman0.symbols (libsmithwaterman0_0.0+git20160702.2610e25-8_s390x) +++ dpkg-gensymbols6HP6Hk 2020-08-03 13:57:38.464847053 +0000 @@ -48,33 +48,37 @@ _ZN20CBandedSmithWatermanD1Ev@Base 0.0+git20160702.2610e25 _ZN20CBandedSmithWatermanD2Ev@Base 0.0+git20160702.2610e25 (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25 + _ZNSt12_Vector_baseIfSaIfEED1Ev@Base 0.0+git20160702.2610e25-8 + _ZNSt12_Vector_baseIfSaIfEED2Ev@Base 0.0+git20160702.2610e25-8 + _ZNSt15_Rb_tree_headerC1EOS_@Base 0.0+git20160702.2610e25-8 + _ZNSt15_Rb_tree_headerC2EOS_@Base 0.0+git20160702.2610e25-8 (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 - (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-8# (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev@Base 0.0+git20160702.2610e25 - (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_@Base 0.0+git20160702.2610e25 - (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-8# (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-8# (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED1Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev@Base 0.0+git20160702.2610e25 (optional)_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 0.0+git20160702.2610e25 - 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