https://launchpad.net/ubuntu/+archive/test-rebuild-20200925-groovy/+build/20003029 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-008 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:18:21 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 30 Sep 10:25:05 ntpdate[1677]: step time server 10.211.37.1 offset 1.042197 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-20003029 --image-type chroot /home/buildd/filecache-default/c742ba36b312cb05af21d0da5b96b5d4203afb06 Creating target for build PACKAGEBUILD-20003029 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-20003029 Starting target for build PACKAGEBUILD-20003029 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-20003029 'deb http://ftpmaster.internal/ubuntu groovy main universe' Overriding sources.list in build-PACKAGEBUILD-20003029 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-20003029 Updating target for build PACKAGEBUILD-20003029 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x Packages [1314 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/universe s390x Packages [12.0 MB] Get:5 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5260 kB] Fetched 19.3 MB in 3s (6321 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libffi8ubuntu1 libgssapi-krb5-2 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl-dev libnsl2 libnss-nis libnss-nisplus libtirpc-common libtirpc-dev libtirpc3 rpcsvc-proto The following packages will be upgraded: apt base-files binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-10 debianutils dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libgcc-10-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libip4tc2 libitm1 liblzma5 libmount1 libmpc3 libmpfr6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev mount openssl sensible-utils systemd systemd-sysv systemd-timesyncd util-linux xz-utils zlib1g 80 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After this operation, 9257 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main s390x libkrb5support0 s390x 1.17-10 [30.1 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x libk5crypto3 s390x 1.17-10 [78.2 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x libkeyutils1 s390x 1.6.1-2ubuntu1 [9796 B] Get:4 http://ftpmaster.internal/ubuntu groovy/main s390x libssl1.1 s390x 1.1.1f-1ubuntu4 [1043 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x libkrb5-3 s390x 1.17-10 [310 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main s390x libgssapi-krb5-2 s390x 1.17-10 [111 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main s390x libtirpc-common all 1.2.6-1build1 [7472 B] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x libtirpc3 s390x 1.2.6-1build1 [75.3 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x libnsl2 s390x 1.3.0-0ubuntu3 [38.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x libnss-nis s390x 3.1-0ubuntu4 [24.4 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x libnss-nisplus s390x 1.3-0ubuntu4 [24.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x libc6 s390x 2.32-0ubuntu3 [2333 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x libc-dev-bin s390x 2.32-0ubuntu3 [29.8 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x libc6-dev s390x 2.32-0ubuntu3 [1745 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu3 [60.6 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x libtirpc-dev s390x 1.2.6-1build1 [190 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x libnsl-dev s390x 1.3.0-0ubuntu3 [67.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x libc-bin s390x 2.32-0ubuntu3 [603 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main s390x linux-libc-dev s390x 5.8.0-20.21 [1154 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main s390x libcc1-0 s390x 10.2.0-11ubuntu1 [39.3 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main s390x libctf0 s390x 2.35.1-1ubuntu1 [49.5 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x libctf-nobfd0 s390x 2.35.1-1ubuntu1 [50.2 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x binutils-s390x-linux-gnu s390x 2.35.1-1ubuntu1 [1691 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x libbinutils s390x 2.35.1-1ubuntu1 [338 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x binutils-common s390x 2.35.1-1ubuntu1 [212 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x binutils s390x 2.35.1-1ubuntu1 [3344 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x gcc-10-base s390x 10.2.0-11ubuntu1 [19.5 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x libgcc-s1 s390x 10.2.0-11ubuntu1 [30.3 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x libgomp1 s390x 10.2.0-11ubuntu1 [115 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main s390x libitm1 s390x 10.2.0-11ubuntu1 [28.6 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main s390x libatomic1 s390x 10.2.0-11ubuntu1 [8388 B] Get:32 http://ftpmaster.internal/ubuntu groovy/main s390x libasan6 s390x 10.2.0-11ubuntu1 [351 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main s390x libubsan1 s390x 10.2.0-11ubuntu1 [155 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x g++-10 s390x 10.2.0-11ubuntu1 [8396 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main s390x libstdc++-10-dev s390x 10.2.0-11ubuntu1 [1732 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main s390x libgcc-10-dev s390x 10.2.0-11ubuntu1 [778 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main s390x gcc-10 s390x 10.2.0-11ubuntu1 [14.8 MB] Get:38 http://ftpmaster.internal/ubuntu groovy/main s390x cpp-10 s390x 10.2.0-11ubuntu1 [7295 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main s390x libstdc++6 s390x 10.2.0-11ubuntu1 [518 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main s390x zlib1g s390x 1:1.2.11.dfsg-2ubuntu2 [61.6 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main s390x libgmp10 s390x 2:6.2.0+dfsg-6ubuntu1 [252 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main s390x libmpfr6 s390x 4.1.0-3 [254 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main s390x libmpc3 s390x 1.2.0~rc1-1 [43.4 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main s390x libzstd1 s390x 1.4.5+dfsg-4 [335 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main s390x base-files s390x 11ubuntu13 [60.4 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main s390x bsdutils s390x 1:2.36-3ubuntu1 [85.8 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main s390x libselinux1 s390x 3.1-2 [65.7 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main s390x coreutils s390x 8.32-3ubuntu1 [1460 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main s390x debianutils s390x 4.11.1 [85.5 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main s390x dpkg s390x 1.20.5ubuntu2 [1177 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main s390x util-linux s390x 2.36-3ubuntu1 [1068 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main s390x liblzma5 s390x 5.2.4-1ubuntu1 [90.5 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main s390x libffi8ubuntu1 s390x 3.4~20200819gead65ca871-0ubuntu3 [17.9 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main s390x libp11-kit0 s390x 0.23.21-2build1 [215 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main s390x libgnutls30 s390x 3.6.15-4ubuntu2 [678 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main s390x systemd-sysv s390x 246.6-1ubuntu1 [10.3 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main s390x systemd-timesyncd s390x 246.6-1ubuntu1 [27.2 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main s390x libapparmor1 s390x 3.0.0~beta1-0ubuntu6 [36.8 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main s390x libaudit-common all 1:2.8.5-3ubuntu1 [4076 B] Get:60 http://ftpmaster.internal/ubuntu groovy/main s390x libaudit1 s390x 1:2.8.5-3ubuntu1 [38.1 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main s390x libcap2 s390x 1:2.43-1 [18.7 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main s390x libjson-c5 s390x 0.15-1 [33.0 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main s390x libblkid1 s390x 2.36-3ubuntu1 [130 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main s390x libuuid1 s390x 2.36-3ubuntu1 [21.7 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main s390x libcryptsetup12 s390x 2:2.3.3-1ubuntu6 [183 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main s390x libip4tc2 s390x 1.8.5-3ubuntu1 [20.4 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main s390x libmount1 s390x 2.36-3ubuntu1 [143 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main s390x libpam0g s390x 1.3.1-5ubuntu6 [54.9 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main s390x mount s390x 2.36-3ubuntu1 [119 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main s390x systemd s390x 246.6-1ubuntu1 [4293 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main s390x libsystemd0 s390x 246.6-1ubuntu1 [293 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main s390x libudev1 s390x 246.6-1ubuntu1 [73.4 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main s390x libapt-pkg6.0 s390x 2.1.10 [847 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main s390x apt s390x 2.1.10 [1285 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu6 [43.4 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main s390x libpam-modules s390x 1.3.1-5ubuntu6 [250 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6ubuntu3 [613 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main s390x libpam-runtime all 1.3.1-5ubuntu6 [37.3 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main s390x libsemanage-common all 3.1-1 [10.2 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main s390x libsemanage1 s390x 3.1-1 [80.7 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main s390x libsmartcols1 s390x 2.36-3ubuntu1 [95.9 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main s390x sensible-utils all 0.0.13 [15.1 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main s390x openssl s390x 1.1.1f-1ubuntu4 [614 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main s390x ca-certificates all 20200601 [147 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main s390x libsqlite3-0 s390x 3.33.0-1 [646 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main s390x xz-utils s390x 5.2.4-1ubuntu1 [80.5 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main s390x libgdbm6 s390x 1.18.1-5.1 [28.0 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main s390x libpng16-16 s390x 1.6.37-3 [180 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main s390x g++ s390x 4:10.2.0-1ubuntu1 [1604 B] Get:90 http://ftpmaster.internal/ubuntu groovy/main s390x gcc s390x 4:10.2.0-1ubuntu1 [5204 B] Get:91 http://ftpmaster.internal/ubuntu groovy/main s390x cpp s390x 4:10.2.0-1ubuntu1 [27.7 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main s390x dpkg-dev all 1.20.5ubuntu2 [758 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main s390x libdpkg-perl all 1.20.5ubuntu2 [232 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main s390x build-essential s390x 12.8ubuntu3 [4636 B] Get:95 http://ftpmaster.internal/ubuntu groovy/main s390x libgdbm-compat4 s390x 1.18.1-5.1 [6328 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.0 MB in 1s (56.3 MB/s) Selecting previously unselected package libkrb5support0:s390x. (Reading database ... 12573 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.17-10_s390x.deb ... Unpacking libkrb5support0:s390x (1.17-10) ... Setting up libkrb5support0:s390x (1.17-10) ... Selecting previously unselected package libk5crypto3:s390x. (Reading database ... 12578 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.17-10_s390x.deb ... Unpacking libk5crypto3:s390x (1.17-10) ... Setting up libk5crypto3:s390x (1.17-10) ... Selecting previously unselected package libkeyutils1:s390x. (Reading database ... 12583 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.6.1-2ubuntu1_s390x.deb ... Unpacking libkeyutils1:s390x (1.6.1-2ubuntu1) ... Setting up libkeyutils1:s390x (1.6.1-2ubuntu1) ... (Reading database ... 12588 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1f-1ubuntu4_s390x.deb ... Unpacking libssl1.1:s390x (1.1.1f-1ubuntu4) over (1.1.1f-1ubuntu3) ... Setting up libssl1.1:s390x (1.1.1f-1ubuntu4) ... Selecting previously unselected package libkrb5-3:s390x. (Reading database ... 12588 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.17-10_s390x.deb ... Unpacking libkrb5-3:s390x (1.17-10) ... Setting up libkrb5-3:s390x (1.17-10) ... Selecting previously unselected package libgssapi-krb5-2:s390x. (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.17-10_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.17-10) ... Setting up libgssapi-krb5-2:s390x (1.17-10) ... Selecting previously unselected package libtirpc-common. (Reading database ... 12609 files and directories currently installed.) Preparing to unpack .../libtirpc-common_1.2.6-1build1_all.deb ... Unpacking libtirpc-common (1.2.6-1build1) ... Setting up libtirpc-common (1.2.6-1build1) ... Selecting previously unselected package libtirpc3:s390x. (Reading database ... 12614 files and directories currently installed.) Preparing to unpack .../libtirpc3_1.2.6-1build1_s390x.deb ... Unpacking libtirpc3:s390x (1.2.6-1build1) ... Setting up libtirpc3:s390x (1.2.6-1build1) ... Selecting previously unselected package libnsl2:s390x. (Reading database ... 12619 files and directories currently installed.) Preparing to unpack .../libnsl2_1.3.0-0ubuntu3_s390x.deb ... Unpacking libnsl2:s390x (1.3.0-0ubuntu3) ... Setting up libnsl2:s390x (1.3.0-0ubuntu3) ... (Reading database ... 12624 files and directories currently installed.) Preparing to unpack .../libc6_2.32-0ubuntu3_s390x.deb ... Unpacking libc6:s390x (2.32-0ubuntu3) over (2.31-0ubuntu10) ... Selecting previously unselected package libnss-nis:s390x. Preparing to unpack .../libnss-nis_3.1-0ubuntu4_s390x.deb ... Unpacking libnss-nis:s390x (3.1-0ubuntu4) ... Selecting previously unselected package libnss-nisplus:s390x. 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Setting up xz-utils (5.2.4-1ubuntu1) ... Setting up libpng16-16:s390x (1.6.37-3) ... Setting up libmpc3:s390x (1.2.0~rc1-1) ... Setting up libatomic1:s390x (10.2.0-11ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu2) ... Setting up libubsan1:s390x (10.2.0-11ubuntu1) ... Setting up mount (2.36-3ubuntu1) ... Setting up libnsl-dev:s390x (1.3.0-0ubuntu3) ... Setting up sensible-utils (0.0.13) ... Setting up libbinutils:s390x (2.35.1-1ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu3) ... Setting up openssl (1.1.1f-1ubuntu4) ... Setting up libjson-c5:s390x (0.15-1) ... Setting up libcc1-0:s390x (10.2.0-11ubuntu1) ... Setting up cpp-10 (10.2.0-11ubuntu1) ... Setting up libitm1:s390x (10.2.0-11ubuntu1) ... Setting up libgdbm6:s390x (1.18.1-5.1) ... Setting up libctf0:s390x (2.35.1-1ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.35.1-1ubuntu1) ... Setting up libgcc-10-dev:s390x (10.2.0-11ubuntu1) ... Setting up binutils (2.35.1-1ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu2) ... Setting up ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 13 added, 14 removed; done. Setting up libgdbm-compat4:s390x (1.18.1-5.1) ... Setting up gcc-10 (10.2.0-11ubuntu1) ... Setting up cpp (4:10.2.0-1ubuntu1) ... Setting up libc6-dev:s390x (2.32-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.3.3-1ubuntu6) ... Setting up libstdc++-10-dev:s390x (10.2.0-11ubuntu1) ... Setting up g++-10 (10.2.0-11ubuntu1) ... Setting up gcc (4:10.2.0-1ubuntu1) ... Setting up g++ (4:10.2.0-1ubuntu1) ... Setting up build-essential (12.8ubuntu3) ... Setting up systemd (246.6-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Removing obsolete conffile /etc/dhcp/dhclient-enter-hooks.d/resolved ... Setting up systemd-timesyncd (246.6-1ubuntu1) ... Setting up systemd-sysv (246.6-1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20003029 s390x groovy -c chroot:build-PACKAGEBUILD-20003029 --arch=s390x --dist=groovy --nolog hmmer2_2.3.2+dfsg-6.dsc Initiating build PACKAGEBUILD-20003029 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:18:21 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-008.buildd +==============================================================================+ | hmmer2 2.3.2+dfsg-6 (s390x) Wed, 30 Sep 2020 10:25:26 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-6 Source Version: 2.3.2+dfsg-6 Distribution: groovy Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20003029/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hmmer2_2.3.2+dfsg-6.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/hmmer2-Y5rFre/hmmer2-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-Y5rFre' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-wNqeMd/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-wNqeMd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wNqeMd/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-wNqeMd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wNqeMd/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-wNqeMd/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-wNqeMd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12823 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), pvm-dev, libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename Filtered Build-Depends: debhelper (>= 10), pvm-dev, libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename dpkg-deb: building package 'sbuild-build-depends-hmmer2-dummy' in '/<>/resolver-wNqeMd/apt_archive/sbuild-build-depends-hmmer2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-hmmer2-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-wNqeMd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wNqeMd/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-wNqeMd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wNqeMd/apt_archive ./ Sources [532 B] Get:5 copy:/<>/resolver-wNqeMd/apt_archive ./ Packages [614 B] Fetched 2109 B in 0s (0 B/s) Reading package lists... Reading package lists... Install hmmer2 build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi7 libjson-c4 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libfido2-1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libncurses-dev libperl4-corelibs-perl libpipeline1 libpvm3 libreadline-dev libsigsegv2 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db openssh-client pkg-config po-debconf pvm pvm-dev rename Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff ncurses-doc readline-doc biosquid libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xauth libmail-sendmail-perl libio-stringy-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libfido2-1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libncurses-dev libperl4-corelibs-perl libpipeline1 libpvm3 libreadline-dev libsigsegv2 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db openssh-client pkg-config po-debconf pvm pvm-dev rename sbuild-build-depends-hmmer2-dummy 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 81.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wNqeMd/apt_archive ./ sbuild-build-depends-hmmer2-dummy 0.invalid.0 [912 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x bsdextrautils s390x 2.36-3ubuntu1 [77.4 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic-mgc s390x 1:5.38-5 [219 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic1 s390x 1:5.38-5 [72.9 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x file s390x 1:5.38-5 [23.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x libelf1 s390x 0.181-1 [48.0 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x libglib2.0-0 s390x 2.66.0-2 [1319 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x libicu67 s390x 67.1-4 [8473 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x libxml2 s390x 2.9.10+dfsg-5build1 [645 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x libcbor0.6 s390x 0.6.0-0ubuntu3 [22.5 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x libedit2 s390x 3.1-20191231-1 [82.5 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x libfido2-1 s390x 1.4.0-2 [44.1 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main s390x openssh-client s390x 1:8.3p1-1 [635 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main s390x m4 s390x 1.4.18-4 [196 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x autoconf all 2.69-11.1 [321 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x automake all 1:1.16.2-4ubuntu1 [548 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x libtool all 2.4.6-14 [161 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x dh-autoreconf all 19 [16.1 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:31 http://ftpmaster.internal/ubuntu groovy/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:33 http://ftpmaster.internal/ubuntu groovy/main s390x dwz s390x 0.13-5 [146 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main s390x po-debconf all 1.0.21 [233 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main s390x debhelper all 13.2.1ubuntu1 [879 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main s390x libncurses-dev s390x 6.2-1 [318 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main s390x libperl4-corelibs-perl all 0.004-2 [37.4 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main s390x libreadline-dev s390x 8.0-4 [141 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/universe s390x libsquid1 s390x 1.9g+cvs20050121-12 [78.5 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/universe s390x libsquid-dev s390x 1.9g+cvs20050121-12 [151 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main s390x pkg-config s390x 0.29.2-1ubuntu1 [45.0 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/universe s390x rename all 1.13-1 [16.6 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main s390x dh-exec s390x 0.23.2 [24.5 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/universe s390x libpvm3 s390x 3.4.6-3 [80.0 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/universe s390x pvm s390x 3.4.6-3 [156 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/universe s390x pvm-dev s390x 3.4.6-3 [271 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 1s (29.7 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12823 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_s390x.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Preparing to unpack .../48-sbuild-build-depends-hmmer2-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-hmmer2-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.3-1) ... Setting up libpvm3:s390x (3.4.6-3) ... Setting up libncurses-dev:s390x (6.2-1) ... Setting up bsdextrautils (2.36-3ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:s390x (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.66.0-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libperl4-corelibs-perl (0.004-2) ... Setting up libmagic1:s390x (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.13-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-5) ... Setting up libreadline-dev:s390x (8.0-4) ... Setting up libcbor0.6:s390x (0.6.0-0ubuntu3) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up libsquid1 (1.9g+cvs20050121-12) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfido2-1:s390x (1.4.0-2) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.181-1) ... Setting up libxml2:s390x (2.9.10+dfsg-5build1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up libedit2:s390x (3.1-20191231-1) ... Setting up m4 (1.4.18-4) ... Setting up libsquid-dev (1.9g+cvs20050121-12) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up openssh-client (1:8.3p1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up pvm (3.4.6-3) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up po-debconf (1.0.21) ... Setting up pvm-dev (3.4.6-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-exec (0.23.2) ... Setting up sbuild-build-depends-hmmer2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-118-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-1ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-11ubuntu1 gcc-10_10.2.0-11ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-11ubuntu1 libstdc++6_10.2.0-11ubuntu1 linux-libc-dev_5.8.0-20.21 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu13 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35.1-1ubuntu1 binutils-common_2.35.1-1ubuntu1 binutils-s390x-linux-gnu_2.35.1-1ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-11ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.1 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3build1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-11ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-11ubuntu1 gcc-10-base_10.2.0-11ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0~beta1-0ubuntu6 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-11ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-11ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu1 libaudit1_1:2.8.5-3ubuntu1 libbinutils_2.35.1-1ubuntu1 libblkid1_2.36-3ubuntu1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcbor0.6_0.6.0-0ubuntu3 libcc1-0_10.2.0-11ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-1ubuntu1 libctf0_2.35.1-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libedit2_3.1-20191231-1 libelf1_0.181-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfido2-1_1.4.0-2 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-11ubuntu1 libgcc-s1_10.2.0-11ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-11ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libisl22_0.22.1-1 libitm1_10.2.0-11ubuntu1 libjson-c4_0.13.1+dfsg-9 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncurses-dev_6.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl4-corelibs-perl_0.004-2 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu1 libpvm3_3.4.6-3 libreadline-dev_8.0-4 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-11ubuntu1 libstdc++6_10.2.0-11ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtirpc-common_1.2.6-1build1 libtirpc-dev_1.2.6-1build1 libtirpc3_1.2.6-1build1 libtool_2.4.6-14 libubsan1_10.2.0-11ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-5build1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-20.21 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssh-client_1:8.3p1-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu1 pvm_3.4.6-3 pvm-dev_3.4.6-3 readline-common_8.0-4 rename_1.13-1 rpcsvc-proto_1.4.2-0ubuntu3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hmmer2-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Sep 24 09:36:48 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hmmer2_2.3.2+dfsg-6.dsc dpkg-source: info: extracting hmmer2 in /<>/hmmer2-2.3.2+dfsg dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20003029 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20003029 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20003029 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/hmmer2-2.3.2+dfsg' dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-lfs --enable-pvm configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled optional PVM (Parallel Virtual Machine) support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... no checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/<>/hmmer2-2.3.2+dfsg' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/hmmer2-2.3.2+dfsg' make[2]: Entering directory '/<>/hmmer2-2.3.2+dfsg/src' gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmalign.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c alphabet.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c core_algorithms.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c debug.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c display.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c emit.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c emulation.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c fast_algorithms.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c histogram.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmio.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c mathsupport.c histogram.c: In function ‘ExtremeValueSetHistogram’: histogram.c:725:23: warning: implicit declaration of function ‘IncompleteGamma’ [-Wimplicit-function-declaration] 725 | h->chip = (float) IncompleteGamma((double)(nbins-1-ndegrees)/2., | ^~~~~~~~~~~~~~~ mathsupport.c: In function ‘Logp_cvec’: mathsupport.c:229:15: warning: implicit declaration of function ‘Gammln’ [-Wimplicit-function-declaration] 229 | lnp += Gammln(alpha[x] + cvec[x]); | ^~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c masks.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c misc.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c modelmakers.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c plan7.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c plan9.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c postprob.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c prior.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c pvm.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c threads.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c tophits.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c trace.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmbuild.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmcalibrate.c hmmcalibrate.c: In function ‘main_loop_pvm’: hmmcalibrate.c:949:7: warning: implicit declaration of function ‘StopwatchPVMUnpack’ [-Wimplicit-function-declaration] 949 | StopwatchPVMUnpack(&slavewatch); | ^~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmconvert.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmemit.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmfetch.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmindex.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmpfam.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmsearch.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmcalibrate-pvm.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmpfam-pvm.c hmmcalibrate-pvm.c: In function ‘main’: hmmcalibrate-pvm.c:185:3: warning: implicit declaration of function ‘StopwatchPVMPack’ [-Wimplicit-function-declaration] 185 | StopwatchPVMPack(&stopwatch); | ^~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread `pkg-config --cflags libsquid` -I/include -c hmmsearch-pvm.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/lib/ -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/lib/ -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/lib/ -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 `pkg-config --libs libsquid` -lm /usr/bin/ld: hmmcalibrate.o: in function `main_loop_pvm': ./src/hmmcalibrate.c:949: undefined reference to `StopwatchPVMUnpack' gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/lib/ -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 `pkg-config --libs libsquid` -lm collect2: error: ld returned 1 exit status make[2]: *** [Makefile:97: hmmcalibrate] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/<>/hmmer2-2.3.2+dfsg/src' make[2]: Entering directory '/<>/hmmer2-2.3.2+dfsg/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory '/<>/hmmer2-2.3.2+dfsg/src' make[2]: Entering directory '/<>/hmmer2-2.3.2+dfsg/testsuite' gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c evd_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c masks_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c parsingviterbi_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c tophits_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c trace_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c viterbi_exercise.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c weeviterbi_test.c gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o alignalign_test -L../src alignalign_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o evd_test -L../src evd_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o masks_test -L../src masks_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o parsingviterbi_test -L../src parsingviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o tophits_test -L../src tophits_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o trace_test -L../src trace_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o viterbi_exercise -L../src viterbi_exercise.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -fdebug-prefix-map=/<>/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o weeviterbi_test -L../src weeviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/hmmer2-2.3.2+dfsg/testsuite' make[1]: Leaving directory '/<>/hmmer2-2.3.2+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/hmmer2-2.3.2+dfsg' (cd testsuite; make check) make[2]: Entering directory '/<>/hmmer2-2.3.2+dfsg/testsuite' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Running test suite exercises. Warning: some tests may take several minutes to complete. ./sqc 2 exercises.sqc . ../src exercise 1 [ hmmalign] ... ok. exercise 2 [ hmmalign/h] ... ok. exercise 3 [ hmmalign/m] ... ok. exercise 4 [ hmmalign/o] ... ok. exercise 5 [ hmmalign/q] ... ok. exercise 6 [ hmmalign/informat] ... ok. exercise 7 [ hmmalign/selex] ... ok. exercise 8 [ hmmalign/a2m] ... ok. exercise 9 [ hmmalign/clustal] ... ok. exercise 10 [ hmmalign/msf] ... ok. exercise 11 [ hmmalign/phylip] ... ok. exercise 12 [ hmmalign/oneline] ... ok. exercise 13 [ hmmalign/withali] ... ok. exercise 14 [ hmmalign/mapali] ... ok. exercise 15 [ hmmbuild] ... ok. exercise 16 [ hmmbuild/h] ... ok. exercise 17 [ hmmbuild/F] ... ok. exercise 18 [ hmmbuild/n] ... ok. exercise 19 [ hmmbuild/o] ... ok. exercise 20 [ hmmbuild/A] ... ok. exercise 21 [ hmmbuild/f] ... ok. exercise 22 [ hmmbuild/g] ... ok. exercise 23 [ hmmbuild/s] ... ok. exercise 24 [ hmmbuild/fast] ... ok. exercise 25 [ hmmbuild/hand] ... ok. exercise 26 [ hmmbuild/null] ... ok. exercise 27 [ hmmbuild/pam] ... ok. exercise 28 [ hmmbuild/prior] ... ok. exercise 29 [ hmmbuild/wblosum] ... ok. exercise 30 [ hmmbuild/wgsc] ... ok. exercise 31 [ hmmbuild/wme] ... ok. exercise 32 [ hmmbuild/wpb] ... ok. exercise 33 [ hmmbuild/wvoronoi] ... ok. exercise 34 [ hmmbuild/wnone] ... ok. exercise 35 [ hmmbuild/noeff] ... ok. exercise 36 [ hmmbuild/pbswitch] ... ok. exercise 37 [ hmmbuild/amino] ... ok. exercise 38 [ hmmbuild/nucleic] ... ok. exercise 39 [ hmmbuild/archpri] ... ok. exercise 40 [ hmmbuild/binary] ... ok. exercise 41 [ hmmbuild/cfile] ... ok. exercise 42 [ hmmbuild/gapmax] ... ok. exercise 43 [ hmmbuild/idlevel] ... ok. exercise 44 [ hmmbuild/informat] ... ok. exercise 45 [ hmmbuild/pamwgt] ... ok. exercise 46 [ hmmbuild/swentry] ... ok. exercise 47 [ hmmbuild/swexit] ... ok. exercise 48 [ hmmbuild/verbose] ... ok. exercise 49 [ hmmcalibrate] ... Didn't find executable for cmd at line 63 make[2]: *** [Makefile:59: check] Error 2 make[2]: Leaving directory '/<>/hmmer2-2.3.2+dfsg/testsuite' make[1]: *** [Makefile:98: check] Error 2 make[1]: Leaving directory '/<>/hmmer2-2.3.2+dfsg' dh_auto_test: error: make -j4 check VERBOSE=1 returned exit code 2 make: *** [debian/rules:13: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-09-30T10:25:37Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 4 Distribution: groovy Fail-Stage: build Host Architecture: s390x Install-Time: 6 Job: hmmer2_2.3.2+dfsg-6.dsc Machine Architecture: s390x Package: hmmer2 Package-Time: 11 Source-Version: 2.3.2+dfsg-6 Space: n/a Status: attempted Version: 2.3.2+dfsg-6 -------------------------------------------------------------------------------- Finished at 2020-09-30T10:25:37Z Build needed 00:00:11, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-20003029 Scanning for processes to kill in build PACKAGEBUILD-20003029